AlfalfaGEDB | Msa0685240

M. sativa cultivar zhongmu-4 / Msa0685240

KEGG: K01188|K01237
GO: GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685240	XP_013456264.1	96.367	523	15	2	1	523	1	519	0.0	1040

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685240	sp\|Q5Z9Z0\|BGL24_ORYSJ	62.526	475	178	0	37	511	28	502	0.0	658

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685240	A0A072UWR5	96.367	523	15	2	1	523	1	519	0.0	1040

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005260	Msa0685240	0.838018	3.688856e-57	-8.615850e-47
Msa0011050	Msa0685240	0.802059	6.713265e-49	-8.615850e-47
Msa0059900	Msa0685240	0.829809	4.182115e-55	-8.615850e-47
Msa0071470	Msa0685240	0.832511	9.068556e-56	-8.615850e-47
Msa0104810	Msa0685240	0.871342	7.352479e-67	-8.615850e-47
Msa0137560	Msa0685240	0.805964	1.035308e-49	-8.615850e-47
Msa0151170	Msa0685240	0.835429	1.686465e-56	-8.615850e-47
Msa0260530	Msa0685240	0.800651	1.304207e-48	-8.615850e-47
Msa0264680	Msa0685240	0.824895	6.298311e-54	-8.615850e-47
Msa0271540	Msa0685240	0.803284	3.750945e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0685240	MtrunA17_Chr4g0033321	96.367	523	15	2	1	523	1	519	1040
Msa0685240	MtrunA17_Chr4g0033401	95.985	523	18	1	1	523	1	520	1038
Msa0685240	MtrunA17_Chr4g0033331	88.528	523	57	2	1	523	5	524	940
Msa0685240	MtrunA17_Chr4g0033311	74.662	517	129	1	4	520	8	522	833
Msa0685240	MtrunA17_Chr3g0088441	73.025	519	136	2	6	520	3	521	816
Msa0685240	MtrunA17_Chr2g0329201	71.343	499	141	1	13	511	9	505	754
Msa0685240	MtrunA17_Chr6g0482131	72.479	476	131	0	36	511	35	510	738
Msa0685240	MtrunA17_Chr2g0329191	71.667	480	135	1	32	511	29	507	736
Msa0685240	MtrunA17_Chr4g0033191	68.267	479	152	0	33	511	39	517	719
Msa0685240	MtrunA17_Chr4g0033201	65.619	509	167	2	4	511	9	510	712

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0685240	AT5G44640.1	53.772	517	227	5	1	516	1	506	576
Msa0685240	AT2G44450.1	55.858	478	206	2	37	514	31	503	568
Msa0685240	AT5G42260.1	54.528	508	219	5	1	507	1	497	568
Msa0685240	AT2G44480.1	54.375	480	218	1	36	515	34	512	563
Msa0685240	AT2G44480.3	54.375	480	218	1	36	515	65	543	563
Msa0685240	AT3G60130.1	55.672	476	205	3	37	511	30	500	559
Msa0685240	AT2G25630.1	51.786	504	220	4	14	516	7	488	536
Msa0685240	AT5G24550.1	51.064	517	247	6	9	521	5	519	535
Msa0685240	AT5G24540.1	51.440	521	239	8	9	521	5	519	524
Msa0685240	AT3G60140.1	49.900	499	239	6	16	511	12	502	524

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Find 101 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATCAAAAGCTCTC+AGG	0.470702	4_4:+49343992	Msa0685240:CDS
AAAATCACTGATGGAAACAA+TGG	0.550597	4_4:+49342046	Msa0685240:CDS
AAACTGCAGAAAAGATTTCC+AGG	0.361097	4_4:+49342505	Msa0685240:intron
AAAGTATCAAATCTCTCAAA+AGG	0.385620	4_4:+49342760	Msa0685240:CDS
AACACTGCACCATTGCAAAT+AGG	0.356617	4_4:+49341887	Msa0685240:CDS
AACACTTACATTTAGACCAA+TGG	0.493905	4_4:-49343311	None:intergenic
AACCAAGAAGAGCATCGACC+TGG	0.592148	4_4:-49342638	None:intergenic
AACGAGAAAGAGAATCTGTT+AGG	0.499876	4_4:-49343165	None:intergenic
AAGGGTTATACTGTGAGATT+TGG	0.344341	4_4:+49343938	Msa0685240:CDS
AAGTATCAAATCTCTCAAAA+GGG	0.567104	4_4:+49342761	Msa0685240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATGAACCTATTTGCAA+TGG	-	chr4_4:49341899-49341918	None:intergenic	30.0%
TGCAAATAGGTTCATTGAAT+AGG	+	chr4_4:49341900-49341919	Msa0685240:CDS	30.0%
TATCCTCAAAAAATCACTGA+TGG	+	chr4_4:49342037-49342056	Msa0685240:CDS	30.0%
AAAATCACTGATGGAAACAA+TGG	+	chr4_4:49342046-49342065	Msa0685240:CDS	30.0%
AATCATGAAGGATATGAACT+TGG	+	chr4_4:49342114-49342133	Msa0685240:CDS	30.0%
CAACAACCTCATTAATGAAT+TGG	+	chr4_4:49342225-49342244	Msa0685240:CDS	30.0%
GAACTTTGCTTCAAAACATT+TGG	+	chr4_4:49342536-49342555	Msa0685240:CDS	30.0%
TTGGAGATAGAGTAAAACAT+TGG	+	chr4_4:49342555-49342574	Msa0685240:CDS	30.0%
ATGTGCAACTAAATAAGGTT+CGG	-	chr4_4:49342696-49342715	None:intergenic	30.0%
TTATAGGTTTATGGATCCTT+TGG	+	chr4_4:49342970-49342989	Msa0685240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	49341700	49344209	49341700	ID=Msa0685240;Name=Msa0685240
chr4_4	mRNA	49341700	49344209	49341700	ID=Msa0685240-mRNA-1;Parent=Msa0685240;Name=Msa0685240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=106\|1\|1\|1\|1\|1\|8\|134\|523
chr4_4	exon	49341700	49342256	49341700	ID=Msa0685240-mRNA-1:exon:12382;Parent=Msa0685240-mRNA-1
chr4_4	exon	49342333	49342420	49342333	ID=Msa0685240-mRNA-1:exon:12383;Parent=Msa0685240-mRNA-1
chr4_4	exon	49342514	49342885	49342514	ID=Msa0685240-mRNA-1:exon:12384;Parent=Msa0685240-mRNA-1
chr4_4	exon	49342976	49343193	49342976	ID=Msa0685240-mRNA-1:exon:12385;Parent=Msa0685240-mRNA-1
chr4_4	exon	49343293	49343324	49343293	ID=Msa0685240-mRNA-1:exon:12386;Parent=Msa0685240-mRNA-1
chr4_4	exon	49343418	49343520	49343418	ID=Msa0685240-mRNA-1:exon:12387;Parent=Msa0685240-mRNA-1
chr4_4	exon	49343673	49343781	49343673	ID=Msa0685240-mRNA-1:exon:12388;Parent=Msa0685240-mRNA-1
chr4_4	exon	49343877	49344209	49343877	ID=Msa0685240-mRNA-1:exon:12389;Parent=Msa0685240-mRNA-1
chr4_4	five_prime_UTR	49341700	49341805	49341700	ID=Msa0685240-mRNA-1:five_prime_utr;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49341806	49342256	49341806	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49342333	49342420	49342333	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49342514	49342885	49342514	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49342976	49343193	49342976	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49343293	49343324	49343293	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49343418	49343520	49343418	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49343673	49343781	49343673	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	CDS	49343877	49344075	49343877	ID=Msa0685240-mRNA-1:cds;Parent=Msa0685240-mRNA-1
chr4_4	three_prime_UTR	49344076	49344209	49344076	ID=Msa0685240-mRNA-1:three_prime_utr;Parent=Msa0685240-mRNA-1

Gene Sequence

>Msa0685240

ATGAGATATTTCCTATTCTCTCTCTTGTTGTCTATAGTTTCAACATTCATTATTACTTTAACAGACGGTAAAGAAATAATTAACACTGCACCATTGCAAATAGGTTCATTGAATAGGAATGATTTCCCAGAAGGCTTCATATTTGGCACAGCATCTTCTGCATACCAGTATGAAGGTGCAGCAAGTGAAGGTGGAAGAGGACCAAGTATATGGGATACTTTCACTCATAGATATCCTCAAAAAATCACTGATGGAAACAATGGAGACGTTGCAGTTGACTCGTATCATCGCTATAAGGAAGATGTTGGAATCATGAAGGATATGAACTTGGATGCATACAGATTTTCTATATCTTGGTCTAGAATACTCCCAGATGGGAAACTAAGTGGAGGAATTAATCAAGAAGGAATCGACTATTACAACAACCTCATTAATGAATTGGTGGCAAATGGTTTACAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAAACTCTAGAAGATGAATATGGCGGTTTCTTAAGCCCACTCATCATAAAAGATTTCCAGGACTATGCAGAACTTTGCTTCAAAACATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAGCCATGGACTTACAGTCAAGATGGGTATGCAAATGGTGAAATGGCACCAGGTCGATGCTCTTCTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGGAACCGAACCTTATTTAGTTGCACATTATCAACTTCTAGCTCATGCAGCAGTTGTTAATTTATACAAGACAAAGTATCAAATCTCTCAAAAGGGTGTGATAGGTATAACATTGGTCATAAACTATTTTGTGCCACGCTCAGATAACAAACTTGATATAAAGGCTGCTGAACGAGCTACAGACTTTATGTTTGGATGGTTTATGGATCCTTTGGCCAATGGAGATTATCCAAAAAACATGAGAGCCTTAGTCAGAACAAGGTTACCAAAGTTTACAAAAGAGCAATCTAGGCTAGTGAGTGGTTCATTTGATTTTATTGGCATAAATTACTACTCTTCATGTTATGCTTCTGATGCACCTCAATTGAGCAATGGCAAACCTAGCTACCTAACAGATTCTCTTTCTCGTTTTTCATTCGAACGTGATGGGAAAACCATTGGTCTAAATGTTGCTTCAAATTGGTTGTATGTTTATCCAAGAGCAATTCGAGACTTTCTCATACAAGTTAAAGAAAAATACAACAACCCTTTAATTTATATTACTGAAAATGGTATTAATGAGTACGATGATCCATCATTATCACTTGAGGAATCACTTATGGATACTTATAGAGTTGATTATCATTATCGTCATTTATTCTATCTTAATGAGGCAATCAAGGCTGGTGTAAATGTAAAGGGATACTTTGCATGGTCTTTGTTGGACAATTTTGAATGGCACAAGGGTTATACTGTGAGATTTGGAATGACCTTTGTGGATTACAAAAATGGTTTGAAAAGATATCAAAAGCTCTCAGGATTGTGGTTCAAGAATTTTCTCACATCAGAGAACAAAAAAGTTTACATAGATTCCATTTAA

Protein sequence

>Msa0685240

MRYFLFSLLLSIVSTFIITLTDGKEIINTAPLQIGSLNRNDFPEGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHRYPQKITDGNNGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPDGKLSGGINQEGIDYYNNLINELVANGLQPFVTLFHWDLPQTLEDEYGGFLSPLIIKDFQDYAELCFKTFGDRVKHWITLNEPWTYSQDGYANGEMAPGRCSSWLNPNCTGGDSGTEPYLVAHYQLLAHAAVVNLYKTKYQISQKGVIGITLVINYFVPRSDNKLDIKAAERATDFMFGWFMDPLANGDYPKNMRALVRTRLPKFTKEQSRLVSGSFDFIGINYYSSCYASDAPQLSNGKPSYLTDSLSRFSFERDGKTIGLNVASNWLYVYPRAIRDFLIQVKEKYNNPLIYITENGINEYDDPSLSLEESLMDTYRVDYHYRHLFYLNEAIKAGVNVKGYFAWSLLDNFEWHKGYTVRFGMTFVDYKNGLKRYQKLSGLWFKNFLTSENKKVYIDSI*