Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303550 | XP_013458471.1 | 91.614 | 477 | 31 | 5 | 1 | 472 | 1 | 473 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303550 | sp|O82645|IQM1_ARATH | 64.477 | 411 | 128 | 6 | 60 | 465 | 87 | 484 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303550 | A0A072US72 | 91.614 | 477 | 31 | 5 | 1 | 472 | 1 | 473 | 0.0 | 843 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa1303550 | 0.816035 | 6.805148e-52 | -8.615850e-47 |
| Msa0054610 | Msa1303550 | 0.813105 | 3.029007e-51 | -8.615850e-47 |
| Msa0062190 | Msa1303550 | 0.819213 | 1.307159e-52 | -8.615850e-47 |
| Msa0106540 | Msa1303550 | 0.800666 | 1.295209e-48 | -8.615850e-47 |
| Msa0604220 | Msa1303550 | 0.814017 | 1.908283e-51 | -8.615850e-47 |
| Msa0685060 | Msa1303550 | 0.806711 | 7.204982e-50 | -8.615850e-47 |
| Msa0698280 | Msa1303550 | 0.822554 | 2.226145e-53 | -8.615850e-47 |
| Msa0701660 | Msa1303550 | 0.802015 | 6.855195e-49 | -8.615850e-47 |
| Msa0772490 | Msa1303550 | 0.802386 | 5.750447e-49 | -8.615850e-47 |
| Msa0804860 | Msa1303550 | 0.808557 | 2.921274e-50 | -8.615850e-47 |
| Msa0840050 | Msa1303550 | 0.806374 | 8.486206e-50 | -8.615850e-47 |
| Msa0145640 | Msa1303550 | 0.814581 | 1.432406e-51 | -8.615850e-47 |
| Msa1266030 | Msa1303550 | 0.823450 | 1.376473e-53 | -8.615850e-47 |
| Msa1303550 | Msa1439930 | 0.801524 | 8.645676e-49 | -8.615850e-47 |
| Msa1303550 | Msa1453050 | 0.821029 | 5.015619e-53 | -8.615850e-47 |
| Msa0868640 | Msa1303550 | 0.805382 | 1.371658e-49 | -8.615850e-47 |
| Msa0971060 | Msa1303550 | 0.812287 | 4.574024e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303550 | MtrunA17_Chr4g0071041 | 91.614 | 477 | 31 | 5 | 1 | 472 | 1 | 473 | 0.0 | 843 |
| Msa1303550 | MtrunA17_Chr2g0299641 | 69.936 | 469 | 101 | 7 | 21 | 468 | 57 | 506 | 0.0 | 645 |
| Msa1303550 | MtrunA17_Chr8g0342561 | 59.719 | 427 | 160 | 6 | 52 | 472 | 84 | 504 | 1.40e-175 | 502 |
| Msa1303550 | MtrunA17_Chr2g0330061 | 52.206 | 408 | 161 | 8 | 65 | 461 | 80 | 464 | 3.06e-132 | 390 |
| Msa1303550 | MtrunA17_Chr8g0378761 | 58.438 | 320 | 114 | 7 | 37 | 342 | 84 | 398 | 5.86e-120 | 365 |
| Msa1303550 | MtrunA17_Chr8g0378761 | 44.706 | 85 | 34 | 3 | 355 | 429 | 513 | 594 | 1.35e-12 | 70.1 |
| Msa1303550 | MtrunA17_Chr3g0121261 | 61.649 | 279 | 94 | 6 | 86 | 352 | 6 | 283 | 1.70e-116 | 343 |
| Msa1303550 | MtrunA17_Chr1g0176231 | 63.636 | 275 | 92 | 3 | 75 | 343 | 67 | 339 | 8.41e-115 | 349 |
| Msa1303550 | MtrunA17_Chr1g0176231 | 47.059 | 85 | 36 | 3 | 379 | 463 | 488 | 563 | 6.68e-13 | 70.9 |
| Msa1303550 | MtrunA17_Chr1g0178991 | 45.249 | 442 | 180 | 9 | 65 | 447 | 46 | 484 | 4.54e-111 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1303550 | AT4G33050.3 | 64.477 | 411 | 128 | 6 | 60 | 465 | 87 | 484 | 0.0 | 518 |
| Msa1303550 | AT4G33050.5 | 64.477 | 411 | 128 | 6 | 60 | 465 | 159 | 556 | 1.38e-180 | 517 |
| Msa1303550 | AT4G33050.2 | 59.020 | 449 | 128 | 7 | 60 | 465 | 87 | 522 | 2.89e-174 | 500 |
| Msa1303550 | AT5G57010.1 | 56.114 | 458 | 160 | 7 | 22 | 466 | 66 | 495 | 8.87e-172 | 492 |
| Msa1303550 | AT2G26190.3 | 64.198 | 405 | 134 | 6 | 69 | 465 | 126 | 527 | 8.81e-169 | 486 |
| Msa1303550 | AT2G26190.1 | 64.198 | 405 | 134 | 6 | 69 | 465 | 126 | 527 | 8.81e-169 | 486 |
| Msa1303550 | AT4G33050.4 | 77.419 | 248 | 55 | 1 | 60 | 307 | 87 | 333 | 1.33e-137 | 399 |
| Msa1303550 | AT2G26190.2 | 73.455 | 275 | 63 | 4 | 69 | 336 | 126 | 397 | 6.16e-137 | 401 |
| Msa1303550 | AT4G33050.1 | 67.133 | 286 | 55 | 2 | 60 | 307 | 87 | 371 | 6.13e-130 | 381 |
| Msa1303550 | AT3G13600.1 | 63.542 | 288 | 94 | 5 | 70 | 347 | 96 | 382 | 2.59e-121 | 367 |
| Msa1303550 | AT3G13600.1 | 51.807 | 83 | 35 | 2 | 382 | 463 | 520 | 598 | 1.56e-15 | 79.7 |
| Msa1303550 | AT3G13600.2 | 63.542 | 288 | 94 | 5 | 70 | 347 | 96 | 382 | 2.59e-121 | 367 |
| Msa1303550 | AT3G13600.2 | 51.807 | 83 | 35 | 2 | 382 | 463 | 520 | 598 | 1.56e-15 | 79.7 |
| Msa1303550 | AT3G52870.1 | 45.700 | 407 | 173 | 6 | 82 | 441 | 49 | 454 | 1.67e-116 | 350 |
| Msa1303550 | AT3G58480.1 | 64.074 | 270 | 88 | 3 | 82 | 343 | 98 | 366 | 2.78e-115 | 351 |
| Msa1303550 | AT3G58480.1 | 38.889 | 90 | 40 | 2 | 367 | 441 | 467 | 556 | 1.22e-12 | 70.5 |
| Msa1303550 | AT4G33050.6 | 80.702 | 171 | 32 | 1 | 60 | 230 | 87 | 256 | 6.82e-97 | 293 |
Find 115 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACTTGCAGTTGAAAT+TGG | 0.107738 | 8_3:+66698212 | None:intergenic |
| TGAAGTACTCATCTTATTAT+TGG | 0.159172 | 8_3:+66700451 | None:intergenic |
| AAAGAATTTATAAGCTTTCT+TGG | 0.184873 | 8_3:-66698763 | Msa1303550:CDS |
| CTAGGTGACATTCTAACTTT+TGG | 0.235750 | 8_3:+66698269 | None:intergenic |
| TTCACATGTATTATGATATC+TGG | 0.237835 | 8_3:-66699693 | Msa1303550:CDS |
| CAATTTCAACTGCAAGTTAA+AGG | 0.240605 | 8_3:-66698211 | Msa1303550:exon |
| GAATGACCCTCTAAATTCTT+TGG | 0.243996 | 8_3:+66698055 | None:intergenic |
| CAACGTGACACAGCAGTTTC+AGG | 0.247868 | 8_3:+66700092 | None:intergenic |
| GCAGTTGAAATTGGGTTTCT+TGG | 0.258697 | 8_3:+66698221 | None:intergenic |
| CGTGACATCAACTCATAAAA+AGG | 0.267494 | 8_3:-66698486 | Msa1303550:CDS |
| TTTGTGGGGCATTATATTTA+TGG | 0.288333 | 8_3:-66700504 | Msa1303550:exon |
| CGTTGTAGAACAGTGCTTCT+TGG | 0.292853 | 8_3:+66699466 | None:intergenic |
| CAACATTCAAGCTTTCTTGC+TGG | 0.301504 | 8_3:-66699140 | Msa1303550:CDS |
| ATGTTTGAATTGATCACTTT+TGG | 0.305545 | 8_3:+66700340 | None:intergenic |
| GTTTAAAACTGACCAACTTT+TGG | 0.313670 | 8_3:+66698026 | None:intergenic |
| CTGCAAGTTAAAGGAAGCTT+TGG | 0.359706 | 8_3:-66698202 | Msa1303550:exon |
| GATGATACTTATTCAATTGT+TGG | 0.363001 | 8_3:-66698587 | Msa1303550:CDS |
| TGAATAAGTATCATCGTCTA+TGG | 0.363512 | 8_3:+66698595 | None:intergenic |
| GCAATTTCCAAAGAATTTAG+AGG | 0.365004 | 8_3:-66698062 | Msa1303550:three_prime_UTR |
| TCTGTTACTGATTTGTCAAA+TGG | 0.365989 | 8_3:-66700476 | Msa1303550:CDS |
| TTGAATGTTGCATGCTTTAG+TGG | 0.371011 | 8_3:-66697864 | Msa1303550:three_prime_UTR |
| GGTTGGAAAAGGTTTATCTA+AGG | 0.378650 | 8_3:-66699925 | Msa1303550:CDS |
| ATTGACCCGCGTCATCGATA+TGG | 0.379869 | 8_3:-66699724 | Msa1303550:CDS |
| AAAGGAAGCTTTGGAGGGAT+TGG | 0.387195 | 8_3:-66698193 | Msa1303550:three_prime_UTR |
| TTGTGGGGCATTATATTTAT+GGG | 0.391483 | 8_3:-66700503 | Msa1303550:exon |
| TTTAACTTGCAGTTGAAATT+GGG | 0.397772 | 8_3:+66698213 | None:intergenic |
| TTGTCTTGCAAGTGGTCAAC+TGG | 0.401784 | 8_3:-66698431 | Msa1303550:CDS |
| ATATGAAGTAATTGTTGAAA+AGG | 0.407093 | 8_3:-66699282 | Msa1303550:CDS |
| CGCCAATGCATTAAATATCT+AGG | 0.411900 | 8_3:-66699445 | Msa1303550:CDS |
| GCAGCATCAAGCTCAGAAAC+TGG | 0.423052 | 8_3:+66700263 | None:intergenic |
| CTTTATCTTGAACAAATGAA+TGG | 0.423444 | 8_3:+66700381 | None:intergenic |
| TGCAAGTGGTCAACTGGAGC+TGG | 0.427085 | 8_3:-66698425 | Msa1303550:CDS |
| GTCCTAGATATTTAATGCAT+TGG | 0.427708 | 8_3:+66699443 | None:intergenic |
| TCTTTGAAGTTCTCTTCTGT+TGG | 0.432145 | 8_3:+66698781 | None:intergenic |
| GTCACCTAGGCTTGTGTACA+TGG | 0.437362 | 8_3:-66698255 | Msa1303550:CDS |
| ATAATTTGTAGGTTGGATGT+TGG | 0.439407 | 8_3:-66699520 | Msa1303550:intron |
| CAAGTTAAAGGAAGCTTTGG+AGG | 0.449872 | 8_3:-66698199 | Msa1303550:exon |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 8_3:-66699281 | Msa1303550:CDS |
| TCAAGCTCAGAAACTGGTCT+TGG | 0.453433 | 8_3:+66700269 | None:intergenic |
| AGCAAGAACAAGAGCAGCTA+AGG | 0.455856 | 8_3:-66700063 | Msa1303550:intron |
| CATTCAAGCTTTCTTGCTGG+TGG | 0.460779 | 8_3:-66699137 | Msa1303550:CDS |
| AATGATTTACCGTTGTTGTA+TGG | 0.471270 | 8_3:+66700742 | None:intergenic |
| GTAGGAACCTTTGTTTGTTG+TGG | 0.471273 | 8_3:+66698536 | None:intergenic |
| TGAAGTTCTCTTCTGTTGGA+TGG | 0.474618 | 8_3:+66698785 | None:intergenic |
| CTAGGCCTAGGAGAAGGAAT+TGG | 0.478665 | 8_3:+66698293 | None:intergenic |
| AGAGTTATGGTGGAAAGCAT+TGG | 0.479204 | 8_3:-66700165 | Msa1303550:CDS |
| TCCGATAAAATCGATGGACT+TGG | 0.484424 | 8_3:-66698108 | Msa1303550:three_prime_UTR |
| AGGTTTATCTAAGGATGAAA+AGG | 0.485144 | 8_3:-66699916 | Msa1303550:CDS |
| TTATCATTGACATTGACCTT+AGG | 0.486850 | 8_3:+66698512 | None:intergenic |
| CTGCAAGGTTTCTTCTAGTA+CGG | 0.488174 | 8_3:+66700207 | None:intergenic |
| AATTGTTGAAAAGGGAAGGT+TGG | 0.496058 | 8_3:-66699273 | Msa1303550:CDS |
| CTAATGTTATGATTTACTAC+TGG | 0.496264 | 8_3:+66697970 | None:intergenic |
| CAGTTGTAGTGGAAGAGTTA+TGG | 0.497630 | 8_3:-66700178 | Msa1303550:CDS |
| ACTGGAGCTGGTCCACGTAT+TGG | 0.499952 | 8_3:-66698413 | Msa1303550:CDS |
| ATACTAGGTGTCTAGGTCCT+TGG | 0.502173 | 8_3:-66697834 | Msa1303550:three_prime_UTR |
| TGAAACTGCTGTGTCACGTT+GGG | 0.503731 | 8_3:-66700090 | Msa1303550:CDS |
| CTGTTACTGATTTGTCAAAT+GGG | 0.503989 | 8_3:-66700475 | Msa1303550:CDS |
| TTGGTCCAATTCCTTCTCCT+AGG | 0.504331 | 8_3:-66698298 | Msa1303550:CDS |
| AACAAGTTCATTTGTCTCCA+AGG | 0.506581 | 8_3:-66698346 | Msa1303550:CDS |
| GTACTGATGAGAAATCAAAA+TGG | 0.515735 | 8_3:-66699223 | Msa1303550:CDS |
| TCATTCTTCAAACCAAAAGT+TGG | 0.526454 | 8_3:-66698038 | Msa1303550:three_prime_UTR |
| GGTTGGTGTATAAACAAGAT+GGG | 0.536691 | 8_3:-66699256 | Msa1303550:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.537642 | 8_3:-66699514 | Msa1303550:intron |
| GAAATTGGGTTTCTTGGACT+AGG | 0.538092 | 8_3:+66698227 | None:intergenic |
| TGTGGGGCATTATATTTATG+GGG | 0.538198 | 8_3:-66700502 | Msa1303550:exon |
| ATTCTTTGGAAATTGCTCTA+CGG | 0.540770 | 8_3:+66698069 | None:intergenic |
| AGGTTGGTGTATAAACAAGA+TGG | 0.542312 | 8_3:-66699257 | Msa1303550:CDS |
| GGTGGTGCAACCACAGCAGC+TGG | 0.542342 | 8_3:-66699119 | Msa1303550:CDS |
| CACTGCAAGAGCCTTGTATG+TGG | 0.543226 | 8_3:-66699186 | Msa1303550:CDS |
| AAGTAATTGTTGAAAAGGGA+AGG | 0.544030 | 8_3:-66699277 | Msa1303550:CDS |
| AACAAAGGTTCCTACTCCTA+AGG | 0.545400 | 8_3:-66698528 | Msa1303550:CDS |
| TGTAGACCTCACAAATGTAA+AGG | 0.548021 | 8_3:-66698729 | Msa1303550:intron |
| CTTTCAAGAATCATGTGTTG+AGG | 0.549804 | 8_3:+66700407 | None:intergenic |
| TTGCAGCATTTAACGCCTCA+AGG | 0.550558 | 8_3:-66698457 | Msa1303550:CDS |
| CCGATAAAATCGATGGACTT+GGG | 0.551665 | 8_3:-66698107 | Msa1303550:three_prime_UTR |
| GGGGTTACATTAAGGGACGG+AGG | 0.553145 | 8_3:+66697760 | None:intergenic |
| TTTAGTGGTACATACATACT+AGG | 0.560086 | 8_3:-66697849 | Msa1303550:three_prime_UTR |
| ACACTTGCAGTCAAAAGCAT+TGG | 0.561007 | 8_3:-66698369 | Msa1303550:CDS |
| TATTTACCTTTACATTTGTG+AGG | 0.561561 | 8_3:+66698723 | None:intergenic |
| TGCAGATTGTGCAGTTGTAG+TGG | 0.569563 | 8_3:-66700189 | Msa1303550:CDS |
| CAATTTCCAAAGAATTTAGA+GGG | 0.574393 | 8_3:-66698061 | Msa1303550:three_prime_UTR |
| CTGCAAGAGCCTTGTATGTG+GGG | 0.574800 | 8_3:-66699184 | Msa1303550:CDS |
| AATCCCATGTACACAAGCCT+AGG | 0.574805 | 8_3:+66698251 | None:intergenic |
| GGTAGATTAGTAGCAAATCA+AGG | 0.575049 | 8_3:-66699098 | Msa1303550:CDS |
| TTTGGGCTAGGCCTAGGAGA+AGG | 0.580187 | 8_3:+66698287 | None:intergenic |
| ATACAATCCGATAAAATCGA+TGG | 0.580324 | 8_3:-66698114 | Msa1303550:three_prime_UTR |
| AAGAAAGCTTGAATGTTGAA+AGG | 0.583819 | 8_3:+66699145 | None:intergenic |
| GCTTCAGGCAGAGAAATCAC+TGG | 0.585648 | 8_3:+66700308 | None:intergenic |
| TACTAATCTACCAGCTGCTG+TGG | 0.585907 | 8_3:+66699109 | None:intergenic |
| ACTGCAAGAGCCTTGTATGT+GGG | 0.586114 | 8_3:-66699185 | Msa1303550:CDS |
| TACATACATACTAGGTGTCT+AGG | 0.589102 | 8_3:-66697841 | Msa1303550:three_prime_UTR |
| TTGTAGTGGAAGAGTTATGG+TGG | 0.592352 | 8_3:-66700175 | Msa1303550:CDS |
| AAGTTAAAGGAAGCTTTGGA+GGG | 0.593505 | 8_3:-66698198 | Msa1303550:exon |
| CAATGAACCACAACAAACAA+AGG | 0.595908 | 8_3:-66698543 | Msa1303550:CDS |
| CTGAAACTGCTGTGTCACGT+TGG | 0.601275 | 8_3:-66700091 | Msa1303550:CDS |
| AGTATCCTCTGTTGTGACCA+TGG | 0.604033 | 8_3:+66698004 | None:intergenic |
| TCAAGATAAAGAACAAAACA+TGG | 0.608091 | 8_3:-66700369 | Msa1303550:CDS |
| TTGACATTGACCTTAGGAGT+AGG | 0.608674 | 8_3:+66698518 | None:intergenic |
| ATAAGATGAGTACTTCAAGC+AGG | 0.611847 | 8_3:-66700445 | Msa1303550:CDS |
| CTACAACTGCACAATCTGCA+AGG | 0.616966 | 8_3:+66700192 | None:intergenic |
| GTGGGGCATTATATTTATGG+GGG | 0.622486 | 8_3:-66700501 | Msa1303550:exon |
| ATGGACTTGGGAGCAATCTG+AGG | 0.632608 | 8_3:-66698095 | Msa1303550:three_prime_UTR |
| CAAGGAGATTGTCTTGCAAG+TGG | 0.635633 | 8_3:-66698439 | Msa1303550:CDS |
| ACAGAGGATACTTCATGTGA+CGG | 0.638711 | 8_3:-66697993 | Msa1303550:three_prime_UTR |
| AGCAAATCAAGGTGTTCTTG+AGG | 0.643990 | 8_3:-66699087 | Msa1303550:intron |
| TCACCTAGGCTTGTGTACAT+GGG | 0.646732 | 8_3:-66698254 | Msa1303550:CDS |
| GGGTTACATTAAGGGACGGA+GGG | 0.647152 | 8_3:+66697761 | None:intergenic |
| TTAAACCATGGTCACAACAG+AGG | 0.650726 | 8_3:-66698009 | Msa1303550:three_prime_UTR |
| GACTTGGGAGCAATCTGAGG+AGG | 0.653305 | 8_3:-66698092 | Msa1303550:three_prime_UTR |
| CAAAAGTTAGAATGTCACCT+AGG | 0.655633 | 8_3:-66698268 | Msa1303550:CDS |
| TTGTGTCCATATCGATGACG+CGG | 0.659774 | 8_3:+66699718 | None:intergenic |
| TCACGAACACAACCAATACG+TGG | 0.684822 | 8_3:+66698401 | None:intergenic |
| CTTGCAAGACAATCTCCTTG+AGG | 0.686603 | 8_3:+66698442 | None:intergenic |
| TGTGTCCATATCGATGACGC+GGG | 0.693829 | 8_3:+66699719 | None:intergenic |
| ATTCATACACCATACAACAA+CGG | 0.701420 | 8_3:-66700751 | Msa1303550:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGATAAATAATTTGT+AGG | - | chr8_3:66699009-66699028 | Msa1303550:intron | 10.0% |
| !! | AACAAATTAATGCAATTATT+TGG | - | chr8_3:66697952-66697971 | Msa1303550:three_prime_UTR | 15.0% |
| !! | TTAATTAGATACTATAAGAT+AGG | + | chr8_3:66699181-66699200 | None:intergenic | 15.0% |
| !! | ATTTATAGAAAGAGTTTAAT+TGG | + | chr8_3:66699657-66699676 | None:intergenic | 15.0% |
| !!! | GTTTATTACTTCATTTTTTT+AGG | - | chr8_3:66700650-66700669 | Msa1303550:intron | 15.0% |
| !!! | TTCATGTTACTTTCTTTATA+TGG | - | chr8_3:66698541-66698560 | Msa1303550:CDS | 20.0% |
| !! | AAAAATTAGCATTACAACAT+TGG | - | chr8_3:66698650-66698669 | Msa1303550:intron | 20.0% |
| !!! | ATGATAAATAATTTGTAGGT+TGG | - | chr8_3:66699013-66699032 | Msa1303550:intron | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | - | chr8_3:66699258-66699277 | Msa1303550:CDS | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | - | chr8_3:66699259-66699278 | Msa1303550:CDS | 20.0% |
| !!! | TATTTTCAAAGTTATCTATG+TGG | - | chr8_3:66699600-66699619 | Msa1303550:intron | 20.0% |
| !! | AAAGAATTTATAAGCTTTCT+TGG | - | chr8_3:66699777-66699796 | Msa1303550:intron | 20.0% |
| !! | ATTTCATTAGTACTTTACAT+AGG | + | chr8_3:66699879-66699898 | None:intergenic | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+GGG | + | chr8_3:66700805-66700824 | None:intergenic | 20.0% |
| !! | AAGAAATGTGAAAAATACAA+AGG | + | chr8_3:66700806-66700825 | None:intergenic | 20.0% |
| ! | TTAATTGATCGTACAGTTAT+TGG | - | chr8_3:66697876-66697895 | Msa1303550:three_prime_UTR | 25.0% |
| !! | TATAATTTTGTGCAGATTTG+TGG | - | chr8_3:66698020-66698039 | Msa1303550:three_prime_UTR | 25.0% |
| !! | ATAATTTTGTGCAGATTTGT+GGG | - | chr8_3:66698021-66698040 | Msa1303550:three_prime_UTR | 25.0% |
| !! | TGAAGTACTCATCTTATTAT+TGG | + | chr8_3:66698092-66698111 | None:intergenic | 25.0% |
| ! | CTTTATCTTGAACAAATGAA+TGG | + | chr8_3:66698162-66698181 | None:intergenic | 25.0% |
| ! | TCAAGATAAAGAACAAAACA+TGG | - | chr8_3:66698171-66698190 | Msa1303550:three_prime_UTR | 25.0% |
| !! | ATGTTTGAATTGATCACTTT+TGG | + | chr8_3:66698203-66698222 | None:intergenic | 25.0% |
| !!! | AGTGTAACTCTTTTTTGTAA+AGG | - | chr8_3:66698594-66698613 | Msa1303550:CDS | 25.0% |
| !!! | TAACTCTTTTTTGTAAAGGT+TGG | - | chr8_3:66698598-66698617 | Msa1303550:CDS | 25.0% |
| !!! | TTTTTTGTAAAGGTTGGAAA+AGG | - | chr8_3:66698604-66698623 | Msa1303550:CDS | 25.0% |
| !! | ACTTCATATAGTTTTTGATC+TGG | - | chr8_3:66698758-66698777 | Msa1303550:CDS | 25.0% |
| ! | TTCACATGTATTATGATATC+TGG | - | chr8_3:66698847-66698866 | Msa1303550:intron | 25.0% |
| ! | TTCTCATATAGATAACTTAC+TGG | + | chr8_3:66699122-66699141 | None:intergenic | 25.0% |
| !! | ATCTATATGAGAATCACTTT+TGG | - | chr8_3:66699129-66699148 | Msa1303550:CDS | 25.0% |
| ! | ATTAAATCCTTATGAAAAGC+TGG | + | chr8_3:66699499-66699518 | None:intergenic | 25.0% |
| ! | TATTTACCTTTACATTTGTG+AGG | + | chr8_3:66699820-66699839 | None:intergenic | 25.0% |
| ! | TTGATCCTCAAAATAATTAC+TGG | - | chr8_3:66699841-66699860 | Msa1303550:intron | 25.0% |
| !!! | TACTACCAGTAATTATTTTG+AGG | + | chr8_3:66699849-66699868 | None:intergenic | 25.0% |
| ! | GATGATACTTATTCAATTGT+TGG | - | chr8_3:66699953-66699972 | Msa1303550:intron | 25.0% |
| !!! | TTTTCAAGACTCAACAAATT+TGG | - | chr8_3:66700223-66700242 | Msa1303550:CDS | 25.0% |
| !!! | TTTAACTTGCAGTTGAAATT+GGG | + | chr8_3:66700330-66700349 | None:intergenic | 25.0% |
| ! | CAATTTCCAAAGAATTTAGA+GGG | - | chr8_3:66700479-66700498 | Msa1303550:CDS | 25.0% |
| ! | CTAATGTTATGATTTACTAC+TGG | + | chr8_3:66700573-66700592 | None:intergenic | 25.0% |
| ! | ATTGTCCAAAAAAATGAGAA+GGG | + | chr8_3:66700613-66700632 | None:intergenic | 25.0% |
| ! | AATTGTCCAAAAAAATGAGA+AGG | + | chr8_3:66700614-66700633 | None:intergenic | 25.0% |
| ! | AAAAGAAAGAGGCAAAAATA+GGG | + | chr8_3:66700732-66700751 | None:intergenic | 25.0% |
| ! | AAAAAGAAAGAGGCAAAAAT+AGG | + | chr8_3:66700733-66700752 | None:intergenic | 25.0% |
| ! | AAATGTGAAAAATACAAAGG+GGG | + | chr8_3:66700803-66700822 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAATACAAAG+GGG | + | chr8_3:66700804-66700823 | None:intergenic | 25.0% |
| ATTCATACACCATACAACAA+CGG | - | chr8_3:66697789-66697808 | Msa1303550:three_prime_UTR | 30.0% | |
| AATGATTTACCGTTGTTGTA+TGG | + | chr8_3:66697801-66697820 | None:intergenic | 30.0% | |
| CAGTTATTGGAGGTTAATTA+TGG | - | chr8_3:66697889-66697908 | Msa1303550:three_prime_UTR | 30.0% | |
| !! | GGTTTTGACCCAAATATATA+TGG | - | chr8_3:66697973-66697992 | Msa1303550:three_prime_UTR | 30.0% |
| ! | TAATTTTGTGCAGATTTGTG+GGG | - | chr8_3:66698022-66698041 | Msa1303550:three_prime_UTR | 30.0% |
| ! | TTTGTGGGGCATTATATTTA+TGG | - | chr8_3:66698036-66698055 | Msa1303550:three_prime_UTR | 30.0% |
| ! | TTGTGGGGCATTATATTTAT+GGG | - | chr8_3:66698037-66698056 | Msa1303550:three_prime_UTR | 30.0% |
| !! | TCTGTTACTGATTTGTCAAA+TGG | - | chr8_3:66698064-66698083 | Msa1303550:three_prime_UTR | 30.0% |
| !! | CTGTTACTGATTTGTCAAAT+GGG | - | chr8_3:66698065-66698084 | Msa1303550:three_prime_UTR | 30.0% |
| AGGTTTATCTAAGGATGAAA+AGG | - | chr8_3:66698624-66698643 | Msa1303550:intron | 30.0% | |
| AGAGTTTACCAGTAGAAAAA+TGG | + | chr8_3:66698894-66698913 | None:intergenic | 30.0% | |
| ACTGATGAAGATTGTAAAAC+AGG | - | chr8_3:66698952-66698971 | Msa1303550:intron | 30.0% | |
| ! | ATAATTTGTAGGTTGGATGT+TGG | - | chr8_3:66699020-66699039 | Msa1303550:intron | 30.0% |
| GTCCTAGATATTTAATGCAT+TGG | + | chr8_3:66699100-66699119 | None:intergenic | 30.0% | |
| AAGTAATTGTTGAAAAGGGA+AGG | - | chr8_3:66699263-66699282 | Msa1303550:CDS | 30.0% | |
| ! | GTACTGATGAGAAATCAAAA+TGG | - | chr8_3:66699317-66699336 | Msa1303550:intron | 30.0% |
| AAGAAAGCTTGAATGTTGAA+AGG | + | chr8_3:66699398-66699417 | None:intergenic | 30.0% | |
| TATCCACTACATAAAAATGC+AGG | - | chr8_3:66699707-66699726 | Msa1303550:CDS | 30.0% | |
| ACATAAAAATGCAGGCTATT+TGG | - | chr8_3:66699715-66699734 | Msa1303550:CDS | 30.0% | |
| TGAATAAGTATCATCGTCTA+TGG | + | chr8_3:66699948-66699967 | None:intergenic | 30.0% | |
| TTATCATTGACATTGACCTT+AGG | + | chr8_3:66700031-66700050 | None:intergenic | 30.0% | |
| TTGTTGAGTCTTGAAAAACT+TGG | + | chr8_3:66700220-66700239 | None:intergenic | 30.0% | |
| ! | TAGGTGACATTCTAACTTTT+GGG | + | chr8_3:66700273-66700292 | None:intergenic | 30.0% |
| !! | CTTTAACTTGCAGTTGAAAT+TGG | + | chr8_3:66700331-66700350 | None:intergenic | 30.0% |
| CAATTTCAACTGCAAGTTAA+AGG | - | chr8_3:66700329-66700348 | Msa1303550:CDS | 30.0% | |
| ATACAATCCGATAAAATCGA+TGG | - | chr8_3:66700426-66700445 | Msa1303550:CDS | 30.0% | |
| ! | ATTCTTTGGAAATTGCTCTA+CGG | + | chr8_3:66700474-66700493 | None:intergenic | 30.0% |
| GCAATTTCCAAAGAATTTAG+AGG | - | chr8_3:66700478-66700497 | Msa1303550:CDS | 30.0% | |
| TCATTCTTCAAACCAAAAGT+TGG | - | chr8_3:66700502-66700521 | Msa1303550:exon | 30.0% | |
| !! | GTTTAAAACTGACCAACTTT+TGG | + | chr8_3:66700517-66700536 | None:intergenic | 30.0% |
| !!! | AATTCCCCTTCTCATTTTTT+TGG | - | chr8_3:66700605-66700624 | Msa1303550:intron | 30.0% |
| TTGTCCAAAAAAATGAGAAG+GGG | + | chr8_3:66700612-66700631 | None:intergenic | 30.0% | |
| TTTAGTGGTACATACATACT+AGG | - | chr8_3:66700691-66700710 | Msa1303550:intron | 30.0% | |
| ! | TTTTTGCCTCTTTCTTTTTC+TGG | - | chr8_3:66700734-66700753 | Msa1303550:intron | 30.0% |
| AATGTGAAAAATACAAAGGG+GGG | + | chr8_3:66700802-66700821 | None:intergenic | 30.0% | |
| ATTGATCGTACAGTTATTGG+AGG | - | chr8_3:66697879-66697898 | Msa1303550:three_prime_UTR | 35.0% | |
| TGACCCAAATATATATGGCA+TGG | - | chr8_3:66697978-66697997 | Msa1303550:three_prime_UTR | 35.0% | |
| CAGCCATGCCATATATATTT+GGG | + | chr8_3:66697984-66698003 | None:intergenic | 35.0% | |
| ! | TGTGGGGCATTATATTTATG+GGG | - | chr8_3:66698038-66698057 | Msa1303550:three_prime_UTR | 35.0% |
| ATAAGATGAGTACTTCAAGC+AGG | - | chr8_3:66698095-66698114 | Msa1303550:three_prime_UTR | 35.0% | |
| CTTTCAAGAATCATGTGTTG+AGG | + | chr8_3:66698136-66698155 | None:intergenic | 35.0% | |
| GAAGAAAAAACAACTGCTTC+AGG | + | chr8_3:66698250-66698269 | None:intergenic | 35.0% | |
| GGTTGGAAAAGGTTTATCTA+AGG | - | chr8_3:66698615-66698634 | Msa1303550:intron | 35.0% | |
| CGCCAATGCATTAAATATCT+AGG | - | chr8_3:66699095-66699114 | Msa1303550:CDS | 35.0% | |
| AATTGTTGAAAAGGGAAGGT+TGG | - | chr8_3:66699267-66699286 | Msa1303550:CDS | 35.0% | |
| !! | AGGTTGGTGTATAAACAAGA+TGG | - | chr8_3:66699283-66699302 | Msa1303550:CDS | 35.0% |
| ! | GGTTGGTGTATAAACAAGAT+GGG | - | chr8_3:66699284-66699303 | Msa1303550:CDS | 35.0% |
| TATGTGGGGAAAAAGCAAAA+GGG | - | chr8_3:66699370-66699389 | Msa1303550:intron | 35.0% | |
| GGTAGATTAGTAGCAAATCA+AGG | - | chr8_3:66699442-66699461 | Msa1303550:CDS | 35.0% | |
| ! | TAGCCTGCATTTTTATGTAG+TGG | + | chr8_3:66699713-66699732 | None:intergenic | 35.0% |
| !! | TCTTTGAAGTTCTCTTCTGT+TGG | + | chr8_3:66699762-66699781 | None:intergenic | 35.0% |
| TGTAGACCTCACAAATGTAA+AGG | - | chr8_3:66699811-66699830 | Msa1303550:intron | 35.0% | |
| CAATGAACCACAACAAACAA+AGG | - | chr8_3:66699997-66700016 | Msa1303550:intron | 35.0% | |
| CGTGACATCAACTCATAAAA+AGG | - | chr8_3:66700054-66700073 | Msa1303550:intron | 35.0% | |
| AACAAGTTCATTTGTCTCCA+AGG | - | chr8_3:66700194-66700213 | Msa1303550:CDS | 35.0% | |
| ! | CTAGGTGACATTCTAACTTT+TGG | + | chr8_3:66700274-66700293 | None:intergenic | 35.0% |
| CAAAAGTTAGAATGTCACCT+AGG | - | chr8_3:66700272-66700291 | Msa1303550:CDS | 35.0% | |
| !! | AAGTTAAAGGAAGCTTTGGA+GGG | - | chr8_3:66700342-66700361 | Msa1303550:CDS | 35.0% |
| GAATGACCCTCTAAATTCTT+TGG | + | chr8_3:66700488-66700507 | None:intergenic | 35.0% | |
| !!! | AGTTGGTCAGTTTTAAACCA+TGG | - | chr8_3:66700519-66700538 | Msa1303550:intron | 35.0% |
| TTGAATGTTGCATGCTTTAG+TGG | - | chr8_3:66700676-66700695 | Msa1303550:intron | 35.0% | |
| TACATACATACTAGGTGTCT+AGG | - | chr8_3:66700699-66700718 | Msa1303550:intron | 35.0% | |
| GCAGCCATGCCATATATATT+TGG | + | chr8_3:66697985-66698004 | None:intergenic | 40.0% | |
| ! | GTGGGGCATTATATTTATGG+GGG | - | chr8_3:66698039-66698058 | Msa1303550:three_prime_UTR | 40.0% |
| CTGCAAGGTTTCTTCTAGTA+CGG | + | chr8_3:66698336-66698355 | None:intergenic | 40.0% | |
| ! | CAGTTGTAGTGGAAGAGTTA+TGG | - | chr8_3:66698362-66698381 | Msa1303550:CDS | 40.0% |
| ! | TTGTAGTGGAAGAGTTATGG+TGG | - | chr8_3:66698365-66698384 | Msa1303550:CDS | 40.0% |
| ! | AGAGTTATGGTGGAAAGCAT+TGG | - | chr8_3:66698375-66698394 | Msa1303550:CDS | 40.0% |
| ! | AGGAGCTGAAGTGTTCTATA+TGG | - | chr8_3:66698972-66698991 | Msa1303550:intron | 40.0% |
| !!! | TTGCTTTTTCCCCACATACA+AGG | + | chr8_3:66699368-66699387 | None:intergenic | 40.0% |
| GTATGTGGGGAAAAAGCAAA+AGG | - | chr8_3:66699369-66699388 | Msa1303550:intron | 40.0% | |
| CAACATTCAAGCTTTCTTGC+TGG | - | chr8_3:66699400-66699419 | Msa1303550:intron | 40.0% | |
| ! | AGCAAATCAAGGTGTTCTTG+AGG | - | chr8_3:66699453-66699472 | Msa1303550:CDS | 40.0% |
| TGAAAAGCTGGAGTGGAATT+TGG | + | chr8_3:66699487-66699506 | None:intergenic | 40.0% | |
| ! | TTCCACTCCAGCTTTTCATA+AGG | - | chr8_3:66699489-66699508 | Msa1303550:CDS | 40.0% |
| ATCCTTATGAAAAGCTGGAG+TGG | + | chr8_3:66699494-66699513 | None:intergenic | 40.0% | |
| TGAAGTTCTCTTCTGTTGGA+TGG | + | chr8_3:66699758-66699777 | None:intergenic | 40.0% | |
| ! | GTAGGAACCTTTGTTTGTTG+TGG | + | chr8_3:66700007-66700026 | None:intergenic | 40.0% |
| AACAAAGGTTCCTACTCCTA+AGG | - | chr8_3:66700012-66700031 | Msa1303550:intron | 40.0% | |
| TTGACATTGACCTTAGGAGT+AGG | + | chr8_3:66700025-66700044 | None:intergenic | 40.0% | |
| ! | ACACTTGCAGTCAAAAGCAT+TGG | - | chr8_3:66700171-66700190 | Msa1303550:CDS | 40.0% |
| AGTCTTGAAAAACTTGGCCT+TGG | + | chr8_3:66700214-66700233 | None:intergenic | 40.0% | |
| ! | GACATTCTAACTTTTGGGCT+AGG | + | chr8_3:66700268-66700287 | None:intergenic | 40.0% |
| GAAATTGGGTTTCTTGGACT+AGG | + | chr8_3:66700316-66700335 | None:intergenic | 40.0% | |
| GCAGTTGAAATTGGGTTTCT+TGG | + | chr8_3:66700322-66700341 | None:intergenic | 40.0% | |
| CTGCAAGTTAAAGGAAGCTT+TGG | - | chr8_3:66700338-66700357 | Msa1303550:CDS | 40.0% | |
| ! | CAAGTTAAAGGAAGCTTTGG+AGG | - | chr8_3:66700341-66700360 | Msa1303550:CDS | 40.0% |
| ! | TCCGATAAAATCGATGGACT+TGG | - | chr8_3:66700432-66700451 | Msa1303550:CDS | 40.0% |
| !!! | CCCAAGTCCATCGATTTTAT+CGG | + | chr8_3:66700436-66700455 | None:intergenic | 40.0% |
| ! | CCGATAAAATCGATGGACTT+GGG | - | chr8_3:66700433-66700452 | Msa1303550:CDS | 40.0% |
| TTAAACCATGGTCACAACAG+AGG | - | chr8_3:66700531-66700550 | Msa1303550:intron | 40.0% | |
| ACAGAGGATACTTCATGTGA+CGG | - | chr8_3:66700547-66700566 | Msa1303550:intron | 40.0% | |
| ! | TGCCTCTTTCTTTTTCTGGA+AGG | - | chr8_3:66700738-66700757 | Msa1303550:intron | 40.0% |
| TGCCTTCCAGAAAAAGAAAG+AGG | + | chr8_3:66700743-66700762 | None:intergenic | 40.0% | |
| ACAAAGGGGGGTTACATTAA+GGG | + | chr8_3:66700790-66700809 | None:intergenic | 40.0% | |
| TACAAAGGGGGGTTACATTA+AGG | + | chr8_3:66700791-66700810 | None:intergenic | 40.0% | |
| ! | TCAAGCTCAGAAACTGGTCT+TGG | + | chr8_3:66698274-66698293 | None:intergenic | 45.0% |
| CTACAACTGCACAATCTGCA+AGG | + | chr8_3:66698351-66698370 | None:intergenic | 45.0% | |
| TGCAGATTGTGCAGTTGTAG+TGG | - | chr8_3:66698351-66698370 | Msa1303550:CDS | 45.0% | |
| TGAAACTGCTGTGTCACGTT+GGG | - | chr8_3:66698450-66698469 | Msa1303550:CDS | 45.0% | |
| AGCAAGAACAAGAGCAGCTA+AGG | - | chr8_3:66698477-66698496 | Msa1303550:CDS | 45.0% | |
| TTGTGTCCATATCGATGACG+CGG | + | chr8_3:66698825-66698844 | None:intergenic | 45.0% | |
| !!! | GTGCACAGCCATTTTTCTAC+TGG | - | chr8_3:66698883-66698902 | Msa1303550:intron | 45.0% |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | - | chr8_3:66699026-66699045 | Msa1303550:intron | 45.0% |
| CGTTGTAGAACAGTGCTTCT+TGG | + | chr8_3:66699077-66699096 | None:intergenic | 45.0% | |
| ! | ACTGCAAGAGCCTTGTATGT+GGG | - | chr8_3:66699355-66699374 | Msa1303550:intron | 45.0% |
| CATTCAAGCTTTCTTGCTGG+TGG | - | chr8_3:66699403-66699422 | Msa1303550:intron | 45.0% | |
| TACTAATCTACCAGCTGCTG+TGG | + | chr8_3:66699434-66699453 | None:intergenic | 45.0% | |
| TTGCAGCATTTAACGCCTCA+AGG | - | chr8_3:66700083-66700102 | Msa1303550:CDS | 45.0% | |
| CTTGCAAGACAATCTCCTTG+AGG | + | chr8_3:66700101-66700120 | None:intergenic | 45.0% | |
| CAAGGAGATTGTCTTGCAAG+TGG | - | chr8_3:66700101-66700120 | Msa1303550:CDS | 45.0% | |
| TTGTCTTGCAAGTGGTCAAC+TGG | - | chr8_3:66700109-66700128 | Msa1303550:CDS | 45.0% | |
| TCACGAACACAACCAATACG+TGG | + | chr8_3:66700142-66700161 | None:intergenic | 45.0% | |
| !! | GCTTTTGACTGCAAGTGTTC+AGG | + | chr8_3:66700169-66700188 | None:intergenic | 45.0% |
| TTGGTCCAATTCCTTCTCCT+AGG | - | chr8_3:66700242-66700261 | Msa1303550:CDS | 45.0% | |
| TCACCTAGGCTTGTGTACAT+GGG | - | chr8_3:66700286-66700305 | Msa1303550:CDS | 45.0% | |
| AATCCCATGTACACAAGCCT+AGG | + | chr8_3:66700292-66700311 | None:intergenic | 45.0% | |
| !! | AAAGGAAGCTTTGGAGGGAT+TGG | - | chr8_3:66700347-66700366 | Msa1303550:CDS | 45.0% |
| !!! | GAGGGATTGGTTTTTGCTCA+GGG | - | chr8_3:66700360-66700379 | Msa1303550:CDS | 45.0% |
| AGTATCCTCTGTTGTGACCA+TGG | + | chr8_3:66700539-66700558 | None:intergenic | 45.0% | |
| ATACTAGGTGTCTAGGTCCT+TGG | - | chr8_3:66700706-66700725 | Msa1303550:intron | 45.0% | |
| AAGAGGCAAAAATAGGGCCA+AGG | + | chr8_3:66700726-66700745 | None:intergenic | 45.0% | |
| GCTTCAGGCAGAGAAATCAC+TGG | + | chr8_3:66698235-66698254 | None:intergenic | 50.0% | |
| GCAGCATCAAGCTCAGAAAC+TGG | + | chr8_3:66698280-66698299 | None:intergenic | 50.0% | |
| CAACGTGACACAGCAGTTTC+AGG | + | chr8_3:66698451-66698470 | None:intergenic | 50.0% | |
| CTGAAACTGCTGTGTCACGT+TGG | - | chr8_3:66698449-66698468 | Msa1303550:CDS | 50.0% | |
| ATTGACCCGCGTCATCGATA+TGG | - | chr8_3:66698816-66698835 | Msa1303550:intron | 50.0% | |
| TGTGTCCATATCGATGACGC+GGG | + | chr8_3:66698824-66698843 | None:intergenic | 50.0% | |
| ! | CACTGCAAGAGCCTTGTATG+TGG | - | chr8_3:66699354-66699373 | Msa1303550:intron | 50.0% |
| ! | CTGCAAGAGCCTTGTATGTG+GGG | - | chr8_3:66699356-66699375 | Msa1303550:intron | 50.0% |
| CAGGCTATTTGGCCATACAG+TGG | - | chr8_3:66699726-66699745 | Msa1303550:CDS | 50.0% | |
| ! | GGATGGTAGTGTCCACTGTA+TGG | + | chr8_3:66699741-66699760 | None:intergenic | 50.0% |
| CATCGTCTATGGCACATCTC+TGG | + | chr8_3:66699937-66699956 | None:intergenic | 50.0% | |
| CTAGGCCTAGGAGAAGGAAT+TGG | + | chr8_3:66700250-66700269 | None:intergenic | 50.0% | |
| !! | CTAACTTTTGGGCTAGGCCT+AGG | + | chr8_3:66700262-66700281 | None:intergenic | 50.0% |
| GTCACCTAGGCTTGTGTACA+TGG | - | chr8_3:66700285-66700304 | Msa1303550:CDS | 50.0% | |
| !!! | GGAGGGATTGGTTTTTGCTC+AGG | - | chr8_3:66700359-66700378 | Msa1303550:CDS | 50.0% |
| ATGGACTTGGGAGCAATCTG+AGG | - | chr8_3:66700445-66700464 | Msa1303550:CDS | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | + | chr8_3:66700782-66700801 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | + | chr8_3:66700786-66700805 | None:intergenic | 50.0% | |
| TGCAAGTGGTCAACTGGAGC+TGG | - | chr8_3:66700115-66700134 | Msa1303550:CDS | 55.0% | |
| ACTGGAGCTGGTCCACGTAT+TGG | - | chr8_3:66700127-66700146 | Msa1303550:CDS | 55.0% | |
| ! | TTTGGGCTAGGCCTAGGAGA+AGG | + | chr8_3:66700256-66700275 | None:intergenic | 55.0% |
| GACTTGGGAGCAATCTGAGG+AGG | - | chr8_3:66700448-66700467 | Msa1303550:CDS | 55.0% | |
| GGGGTTACATTAAGGGACGG+AGG | + | chr8_3:66700783-66700802 | None:intergenic | 55.0% | |
| GGTGGTGCAACCACAGCAGC+TGG | - | chr8_3:66699421-66699440 | Msa1303550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 66697698 | 66700864 | 66697698 | ID=Msa1303550;Name=Msa1303550 |
| chr8_3 | mRNA | 66697698 | 66700864 | 66697698 | ID=Msa1303550-mRNA-1;Parent=Msa1303550;Name=Msa1303550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=133|0.85|0.87|1|0.85|0.75|8|516|472 |
| chr8_3 | exon | 66697698 | 66698624 | 66697698 | ID=Msa1303550-mRNA-1:exon:20309;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66698730 | 66698816 | 66698730 | ID=Msa1303550-mRNA-1:exon:20308;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66699088 | 66699318 | 66699088 | ID=Msa1303550-mRNA-1:exon:20307;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66699441 | 66699531 | 66699441 | ID=Msa1303550-mRNA-1:exon:20306;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66699658 | 66699746 | 66699658 | ID=Msa1303550-mRNA-1:exon:20305;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66699881 | 66699946 | 66699881 | ID=Msa1303550-mRNA-1:exon:20304;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66700064 | 66700527 | 66700064 | ID=Msa1303550-mRNA-1:exon:20303;Parent=Msa1303550-mRNA-1 |
| chr8_3 | exon | 66700752 | 66700864 | 66700752 | ID=Msa1303550-mRNA-1:exon:20302;Parent=Msa1303550-mRNA-1 |
| chr8_3 | five_prime_UTR | 66700752 | 66700864 | 66700752 | ID=Msa1303550-mRNA-1:five_prime_utr;Parent=Msa1303550-mRNA-1 |
| chr8_3 | five_prime_UTR | 66700508 | 66700527 | 66700508 | ID=Msa1303550-mRNA-1:five_prime_utr;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66700064 | 66700507 | 66700064 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66699881 | 66699946 | 66699881 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66699658 | 66699746 | 66699658 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66699441 | 66699531 | 66699441 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66699088 | 66699318 | 66699088 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66698730 | 66698816 | 66698730 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | CDS | 66698214 | 66698624 | 66698214 | ID=Msa1303550-mRNA-1:cds;Parent=Msa1303550-mRNA-1 |
| chr8_3 | three_prime_UTR | 66697698 | 66698213 | 66697698 | ID=Msa1303550-mRNA-1:three_prime_utr;Parent=Msa1303550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
