Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933940 | sp|Q0JKZ0|SNL6_ORYSJ | 49.038 | 312 | 151 | 5 | 55 | 358 | 62 | 373 | 3.04e-101 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933940 | A0A072U6Q4 | 96.078 | 357 | 14 | 0 | 1 | 357 | 1 | 357 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa0933940 | 0.813295 | 2.751634e-51 | -8.615850e-47 |
| Msa0698280 | Msa0933940 | 0.814150 | 1.783473e-51 | -8.615850e-47 |
| Msa0826380 | Msa0933940 | 0.809370 | 1.956727e-50 | -8.615850e-47 |
| Msa0826450 | Msa0933940 | 0.813090 | 3.051364e-51 | -8.615850e-47 |
| Msa0525930 | Msa0933940 | 0.803328 | 3.674579e-49 | -8.615850e-47 |
| Msa0868640 | Msa0933940 | 0.806725 | 7.156304e-50 | -8.615850e-47 |
| Msa0933940 | Msa0971060 | 0.811342 | 7.344378e-51 | -8.615850e-47 |
| Msa0933940 | Msa1090110 | 0.816083 | 6.639337e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933940 | MtrunA17_Chr6g0450211 | 96.078 | 357 | 14 | 0 | 1 | 357 | 1 | 357 | 0.0 | 709 |
| Msa0933940 | MtrunA17_Chr5g0411071 | 31.699 | 306 | 185 | 8 | 49 | 348 | 6 | 293 | 2.69e-48 | 165 |
| Msa0933940 | MtrunA17_Chr4g0001321 | 33.221 | 298 | 184 | 6 | 51 | 344 | 13 | 299 | 3.61e-35 | 131 |
| Msa0933940 | MtrunA17_Chr2g0333781 | 32.673 | 303 | 189 | 6 | 46 | 344 | 11 | 302 | 9.90e-35 | 130 |
| Msa0933940 | MtrunA17_Chr3g0077231 | 30.435 | 299 | 178 | 11 | 54 | 337 | 5 | 288 | 2.61e-34 | 128 |
| Msa0933940 | MtrunA17_Chr5g0423551 | 31.900 | 279 | 173 | 9 | 56 | 326 | 5 | 274 | 9.68e-33 | 124 |
| Msa0933940 | MtrunA17_Chr3g0077221 | 29.348 | 276 | 170 | 9 | 54 | 318 | 9 | 270 | 1.10e-31 | 121 |
| Msa0933940 | MtrunA17_Chr2g0331211 | 30.303 | 297 | 191 | 8 | 55 | 344 | 5 | 292 | 6.44e-31 | 119 |
| Msa0933940 | MtrunA17_Chr5g0431311 | 31.159 | 276 | 177 | 7 | 54 | 322 | 4 | 273 | 1.24e-29 | 116 |
| Msa0933940 | MtrunA17_Chr4g0002661 | 31.559 | 263 | 171 | 4 | 55 | 314 | 13 | 269 | 1.32e-29 | 116 |
| Msa0933940 | MtrunA17_Chr7g0245741 | 30.000 | 260 | 162 | 7 | 51 | 300 | 4 | 253 | 1.42e-29 | 115 |
| Msa0933940 | MtrunA17_Chr8g0363831 | 28.571 | 273 | 175 | 8 | 54 | 318 | 8 | 268 | 7.40e-29 | 114 |
| Msa0933940 | MtrunA17_Chr4g0039321 | 28.808 | 302 | 189 | 13 | 54 | 343 | 8 | 295 | 5.13e-28 | 111 |
| Msa0933940 | MtrunA17_Chr4g0039311 | 27.815 | 302 | 192 | 11 | 54 | 343 | 10 | 297 | 6.12e-28 | 111 |
| Msa0933940 | MtrunA17_Chr7g0245731 | 30.337 | 267 | 152 | 9 | 51 | 300 | 54 | 303 | 2.43e-26 | 108 |
| Msa0933940 | MtrunA17_Chr8g0364051 | 27.778 | 288 | 180 | 10 | 54 | 328 | 7 | 279 | 2.60e-25 | 104 |
| Msa0933940 | MtrunA17_Chr1g0155431 | 29.297 | 256 | 161 | 10 | 55 | 300 | 8 | 253 | 1.02e-24 | 102 |
| Msa0933940 | MtrunA17_Chr1g0155411 | 29.688 | 256 | 160 | 9 | 55 | 300 | 8 | 253 | 2.67e-24 | 101 |
| Msa0933940 | MtrunA17_Chr3g0106111 | 29.961 | 257 | 164 | 7 | 55 | 304 | 5 | 252 | 1.10e-23 | 99.8 |
| Msa0933940 | MtrunA17_Chr7g0245671 | 30.112 | 269 | 153 | 12 | 51 | 300 | 4 | 256 | 1.72e-23 | 99.4 |
| Msa0933940 | MtrunA17_Chr4g0002961 | 30.798 | 263 | 173 | 4 | 55 | 314 | 13 | 269 | 2.30e-23 | 99.0 |
| Msa0933940 | MtrunA17_Chr7g0245641 | 29.811 | 265 | 159 | 10 | 51 | 300 | 41 | 293 | 2.75e-23 | 99.4 |
| Msa0933940 | MtrunA17_Chr2g0291541 | 29.259 | 270 | 169 | 9 | 54 | 312 | 9 | 267 | 1.34e-22 | 97.1 |
| Msa0933940 | MtrunA17_Chr7g0245691 | 28.788 | 264 | 164 | 10 | 51 | 300 | 4 | 257 | 4.18e-21 | 92.8 |
| Msa0933940 | MtrunA17_Chr4g0048961 | 26.882 | 279 | 170 | 8 | 43 | 300 | 2 | 267 | 5.51e-21 | 92.4 |
| Msa0933940 | MtrunA17_Chr7g0245711 | 30.244 | 205 | 115 | 6 | 109 | 300 | 26 | 215 | 9.13e-21 | 90.9 |
| Msa0933940 | MtrunA17_Chr4g0042101 | 25.606 | 289 | 183 | 9 | 56 | 321 | 25 | 304 | 1.19e-19 | 89.0 |
| Msa0933940 | MtrunA17_Chr7g0245631 | 27.437 | 277 | 177 | 9 | 51 | 315 | 4 | 268 | 1.87e-18 | 85.1 |
| Msa0933940 | MtrunA17_Chr4g0010991 | 27.338 | 278 | 178 | 9 | 52 | 316 | 5 | 271 | 1.29e-15 | 77.0 |
| Msa0933940 | MtrunA17_Chr3g0080551 | 35.484 | 93 | 57 | 2 | 154 | 245 | 21 | 111 | 4.02e-12 | 63.2 |
| Msa0933940 | MtrunA17_Chr3g0133771 | 28.796 | 191 | 115 | 7 | 55 | 245 | 4 | 173 | 3.06e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0933940 | AT5G14700.1 | 53.351 | 373 | 152 | 8 | 1 | 357 | 1 | 367 | 1.64e-132 | 383 |
| Msa0933940 | AT5G14700.2 | 55.678 | 273 | 107 | 4 | 1 | 264 | 1 | 268 | 1.43e-100 | 299 |
| Msa0933940 | AT2G23910.1 | 34.853 | 307 | 179 | 8 | 56 | 354 | 11 | 304 | 1.89e-53 | 179 |
| Msa0933940 | AT2G23910.2 | 36.996 | 273 | 154 | 7 | 56 | 321 | 11 | 272 | 5.67e-53 | 176 |
| Msa0933940 | AT2G23910.3 | 36.996 | 273 | 154 | 7 | 56 | 321 | 11 | 272 | 6.79e-53 | 176 |
| Msa0933940 | AT4G30470.1 | 33.866 | 313 | 191 | 7 | 47 | 354 | 2 | 303 | 3.19e-50 | 170 |
| Msa0933940 | AT2G23910.4 | 35.556 | 270 | 156 | 7 | 90 | 354 | 14 | 270 | 7.67e-48 | 163 |
| Msa0933940 | AT4G35420.1 | 34.082 | 267 | 161 | 8 | 49 | 308 | 2 | 260 | 3.58e-39 | 142 |
| Msa0933940 | AT1G09510.1 | 35.019 | 257 | 149 | 7 | 51 | 299 | 4 | 250 | 2.82e-37 | 137 |
| Msa0933940 | AT5G19440.1 | 33.113 | 302 | 176 | 11 | 54 | 343 | 9 | 296 | 8.90e-37 | 135 |
| Msa0933940 | AT1G15950.2 | 34.868 | 304 | 170 | 11 | 51 | 344 | 10 | 295 | 2.94e-35 | 132 |
| Msa0933940 | AT1G51410.1 | 32.119 | 302 | 177 | 11 | 55 | 343 | 9 | 295 | 3.00e-35 | 131 |
| Msa0933940 | AT1G15950.3 | 34.853 | 307 | 172 | 11 | 51 | 347 | 10 | 298 | 3.72e-35 | 132 |
| Msa0933940 | AT1G15950.1 | 34.853 | 307 | 172 | 11 | 51 | 347 | 10 | 298 | 3.72e-35 | 132 |
| Msa0933940 | AT1G15950.5 | 35.870 | 276 | 148 | 10 | 51 | 316 | 10 | 266 | 2.36e-33 | 125 |
| Msa0933940 | AT1G15950.6 | 35.870 | 276 | 148 | 10 | 51 | 316 | 10 | 266 | 2.38e-33 | 125 |
| Msa0933940 | AT1G80820.1 | 33.546 | 313 | 185 | 11 | 50 | 353 | 3 | 301 | 3.62e-33 | 126 |
| Msa0933940 | AT1G15950.4 | 36.364 | 275 | 148 | 10 | 51 | 316 | 10 | 266 | 3.79e-33 | 125 |
| Msa0933940 | AT2G33590.1 | 32.075 | 318 | 185 | 11 | 49 | 352 | 3 | 303 | 3.58e-32 | 123 |
| Msa0933940 | AT1G80820.2 | 35.688 | 269 | 153 | 9 | 54 | 316 | 7 | 261 | 9.76e-32 | 120 |
| Msa0933940 | AT5G58490.1 | 31.359 | 287 | 177 | 8 | 45 | 322 | 2 | 277 | 5.05e-31 | 120 |
| Msa0933940 | AT1G68540.1 | 31.890 | 254 | 161 | 7 | 57 | 304 | 6 | 253 | 1.25e-30 | 119 |
| Msa0933940 | AT1G09500.3 | 31.783 | 258 | 157 | 7 | 51 | 299 | 4 | 251 | 2.17e-30 | 117 |
| Msa0933940 | AT1G09500.1 | 31.783 | 258 | 157 | 7 | 51 | 299 | 4 | 251 | 5.31e-30 | 117 |
| Msa0933940 | AT1G09480.2 | 32.061 | 262 | 150 | 10 | 51 | 299 | 4 | 250 | 1.04e-29 | 116 |
| Msa0933940 | AT1G09480.1 | 32.061 | 262 | 150 | 10 | 51 | 299 | 51 | 297 | 2.10e-29 | 117 |
| Msa0933940 | AT2G33600.1 | 30.915 | 317 | 188 | 10 | 50 | 352 | 4 | 303 | 3.09e-29 | 115 |
| Msa0933940 | AT1G66800.1 | 31.923 | 260 | 149 | 8 | 54 | 302 | 7 | 249 | 9.32e-29 | 114 |
| Msa0933940 | AT1G61720.1 | 31.734 | 271 | 151 | 8 | 51 | 300 | 9 | 266 | 9.71e-28 | 111 |
| Msa0933940 | AT2G02400.1 | 30.000 | 260 | 168 | 8 | 50 | 304 | 1 | 251 | 2.83e-27 | 110 |
| Msa0933940 | AT1G09490.1 | 29.389 | 262 | 157 | 9 | 51 | 299 | 4 | 250 | 7.59e-26 | 106 |
| Msa0933940 | AT1G09500.2 | 32.367 | 207 | 122 | 6 | 101 | 299 | 21 | 217 | 1.57e-23 | 99.4 |
| Msa0933940 | AT5G42800.1 | 29.344 | 259 | 163 | 9 | 52 | 300 | 5 | 253 | 2.90e-23 | 100 |
| Msa0933940 | AT4G27250.1 | 26.748 | 329 | 205 | 10 | 45 | 347 | 3 | 321 | 5.19e-23 | 99.0 |
| Msa0933940 | AT4G27250.2 | 27.273 | 319 | 206 | 9 | 45 | 347 | 3 | 311 | 1.19e-22 | 97.8 |
| Msa0933940 | AT1G25460.1 | 28.881 | 277 | 184 | 9 | 57 | 327 | 6 | 275 | 5.66e-22 | 95.5 |
| Msa0933940 | AT1G15950.7 | 33.971 | 209 | 122 | 6 | 146 | 347 | 1 | 200 | 8.24e-21 | 90.5 |
| Msa0933940 | AT2G45400.2 | 28.352 | 261 | 166 | 8 | 54 | 300 | 39 | 292 | 9.08e-20 | 89.4 |
| Msa0933940 | AT2G45400.1 | 28.352 | 261 | 166 | 8 | 54 | 300 | 39 | 292 | 1.02e-19 | 89.7 |
| Msa0933940 | AT1G09490.2 | 28.910 | 211 | 123 | 8 | 101 | 299 | 24 | 219 | 1.06e-18 | 85.5 |
| Msa0933940 | AT1G76470.1 | 29.044 | 272 | 175 | 6 | 52 | 314 | 4 | 266 | 1.09e-18 | 86.3 |
| Msa0933940 | AT1G68540.2 | 34.211 | 152 | 89 | 6 | 158 | 304 | 1 | 146 | 8.17e-17 | 79.0 |
| Msa0933940 | AT2G45400.3 | 26.230 | 244 | 162 | 8 | 66 | 300 | 1 | 235 | 1.34e-14 | 73.9 |
Find 91 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGTGGTGTTTCTTATT+TGG | 0.119503 | 6_3:+3137584 | Msa0933940:CDS |
| CAGGAGACATAGAGAAATTT+AGG | 0.158597 | 6_3:+3140839 | Msa0933940:intron |
| CATCACTAGCTGCTTGTATT+TGG | 0.218694 | 6_3:+3142215 | Msa0933940:CDS |
| TGAAGAGATGAGAAATAATT+TGG | 0.235206 | 6_3:+3140873 | Msa0933940:CDS |
| TGCTTTGGTCAACCATCTTT+TGG | 0.239008 | 6_3:+3137611 | Msa0933940:CDS |
| ACTAGTGGTGTTTCTTATTT+GGG | 0.255144 | 6_3:+3137585 | Msa0933940:CDS |
| AATAAAGATATAAAGATAAT+TGG | 0.261104 | 6_3:-3144061 | None:intergenic |
| GCTAAATGATGTTGATAGTT+TGG | 0.289039 | 6_3:+3140912 | Msa0933940:CDS |
| ATTTGGCATTTCTTTGTCTT+AGG | 0.298324 | 6_3:+3143937 | Msa0933940:three_prime_UTR |
| ATAGAGAAATTTAGGGAAAT+AGG | 0.304743 | 6_3:+3140847 | Msa0933940:CDS |
| TACTCACTAAAGCACCTAAT+TGG | 0.309558 | 6_3:-3143871 | None:intergenic |
| TGGTTTGTGTATGGTTTATA+TGG | 0.313534 | 6_3:-3137299 | None:intergenic |
| CATGAGCCATGGTTAATAAT+AGG | 0.320121 | 6_3:-3142268 | None:intergenic |
| GAGAAGCTAGCAAAGGATAT+TGG | 0.331332 | 6_3:+3143754 | Msa0933940:CDS |
| TTCTTATTTGGGTCTTGCTT+TGG | 0.336188 | 6_3:+3137596 | Msa0933940:CDS |
| GTGCTTTAGTGAGTATTAGA+TGG | 0.336507 | 6_3:+3143879 | Msa0933940:exon |
| GAGTTTCAAACCTCTTTCTT+TGG | 0.338234 | 6_3:-3143232 | None:intergenic |
| ATGATATGTAGTTAGGAATA+TGG | 0.338439 | 6_3:-3137355 | None:intergenic |
| ATGCCTTATGTCGTAAGATT+TGG | 0.353834 | 6_3:+3143920 | Msa0933940:three_prime_UTR |
| TTTGGTTATGATATGTAGTT+AGG | 0.354900 | 6_3:-3137362 | None:intergenic |
| ATCACTCTGCATAGACAAAA+AGG | 0.372903 | 6_3:+3142300 | Msa0933940:CDS |
| GTTAGGAATATGGAAAATAA+TGG | 0.373799 | 6_3:-3137345 | None:intergenic |
| TCTTGTACTTGGTTTGTGTA+TGG | 0.387946 | 6_3:-3137308 | None:intergenic |
| AATATGTAGTTTGTTTAGTA+AGG | 0.393784 | 6_3:+3144020 | Msa0933940:three_prime_UTR |
| AAAATAGATGAGGTATGCTT+AGG | 0.398195 | 6_3:+3143969 | Msa0933940:three_prime_UTR |
| AAATAGATGAGGTATGCTTA+GGG | 0.398846 | 6_3:+3143970 | Msa0933940:three_prime_UTR |
| CAAAGTTGAGAACAATGGTT+TGG | 0.404423 | 6_3:-3137380 | None:intergenic |
| AGTTGAAAGGGAGTTATAGA+AGG | 0.405084 | 6_3:-3137269 | None:intergenic |
| GACTCATGTCTAGGCCAATT+AGG | 0.409683 | 6_3:+3143857 | Msa0933940:CDS |
| ACCGACCCTGCTGGTCTCTC+TGG | 0.432331 | 6_3:+3140982 | Msa0933940:CDS |
| ATGCCAAATCTTACGACATA+AGG | 0.444610 | 6_3:-3143923 | None:intergenic |
| AGGAGACATAGAGAAATTTA+GGG | 0.446058 | 6_3:+3140840 | Msa0933940:intron |
| GAAATGAAAGAAAATGCTTA+TGG | 0.447338 | 6_3:+3143685 | Msa0933940:CDS |
| AGCTCATGCATGTGTGTTCA+AGG | 0.459174 | 6_3:+3143663 | Msa0933940:CDS |
| CGGCAGCAGCCACTAGATTC+CGG | 0.459501 | 6_3:-3137467 | None:intergenic |
| TATGGTTAAGAAAGTTGAAA+GGG | 0.463115 | 6_3:-3137281 | None:intergenic |
| TCTTTAGATGATGAAGATGT+TGG | 0.471639 | 6_3:+3137543 | Msa0933940:CDS |
| GGTAAGCAATTGTTGCTGTT+GGG | 0.473684 | 6_3:-3143305 | None:intergenic |
| TGGCAGCTATGGTATGCATT+AGG | 0.477270 | 6_3:+3143174 | Msa0933940:intron |
| TATGTTTATGAAAGTTGAAA+GGG | 0.478441 | 6_3:-3137244 | None:intergenic |
| TGAGGGCTGAAAAGGCTGCT+TGG | 0.484203 | 6_3:+3143202 | Msa0933940:CDS |
| AGGTAAGCAATTGTTGCTGT+TGG | 0.485134 | 6_3:-3143306 | None:intergenic |
| AGGCAAGATGAGGGCTGAAA+AGG | 0.486804 | 6_3:+3143194 | Msa0933940:CDS |
| AGATGGAAATCATGAAATCA+TGG | 0.486897 | 6_3:+3143896 | Msa0933940:exon |
| AACATCTTCATCATCTAAAG+AGG | 0.488950 | 6_3:-3137541 | None:intergenic |
| TAGTTTGGAGAAAGCATTTG+AGG | 0.492619 | 6_3:+3140927 | Msa0933940:CDS |
| GTGTATCCAGAGAGACCAGC+AGG | 0.497284 | 6_3:-3140988 | None:intergenic |
| AACAGTTGATGTAAAGAAAG+TGG | 0.500773 | 6_3:+3143636 | Msa0933940:CDS |
| TTGGTTACATAGTACCTTTG+AGG | 0.509131 | 6_3:-3143326 | None:intergenic |
| TGCCTAAAGAAAAGATATGT+GGG | 0.511259 | 6_3:+3143779 | Msa0933940:CDS |
| ATGCCTAAAGAAAAGATATG+TGG | 0.515158 | 6_3:+3143778 | Msa0933940:CDS |
| TGGCTGCTGCCGGCATACAC+CGG | 0.519967 | 6_3:+3137478 | Msa0933940:CDS |
| TGTGATAAGTGCTGGACAAA+TGG | 0.525063 | 6_3:-3143259 | None:intergenic |
| TCAGGACCTGTGATAAGTGC+TGG | 0.526022 | 6_3:-3143267 | None:intergenic |
| CTATTATTAACCATGGCTCA+TGG | 0.530599 | 6_3:+3142269 | Msa0933940:CDS |
| TGGAGAATAGCCAAAGAAAG+AGG | 0.536882 | 6_3:+3143222 | Msa0933940:CDS |
| ATATGTTTATGAAAGTTGAA+AGG | 0.538149 | 6_3:-3137245 | None:intergenic |
| TCTGCATTTACCGACCCTGC+TGG | 0.539280 | 6_3:+3140973 | Msa0933940:CDS |
| ATATGGTTAAGAAAGTTGAA+AGG | 0.539599 | 6_3:-3137282 | None:intergenic |
| GGTTAATAATAGGAGTAGTA+AGG | 0.539956 | 6_3:-3142258 | None:intergenic |
| AGTTTGGAGAAAGCATTTGA+GGG | 0.540148 | 6_3:+3140928 | Msa0933940:CDS |
| GCAACAATTGCTTACCTCAA+AGG | 0.544142 | 6_3:+3143312 | Msa0933940:CDS |
| GGGTTCCTATGACAAAAGTC+AGG | 0.551639 | 6_3:-3143285 | None:intergenic |
| CGAATAATTGTTGACAACCC+AGG | 0.553344 | 6_3:+3137651 | Msa0933940:CDS |
| GTATAATATATAGAAATCAA+TGG | 0.560125 | 6_3:+3142111 | Msa0933940:intron |
| CGGAATCTAGTGGCTGCTGC+CGG | 0.566719 | 6_3:+3137468 | Msa0933940:CDS |
| ATGAACAAAGTTGAGAACAA+TGG | 0.573120 | 6_3:-3137385 | None:intergenic |
| CAGAGCTTGATATCTTTCAC+CGG | 0.583324 | 6_3:+3137448 | Msa0933940:CDS |
| AAAGCATTTGAGGGCTGTCG+TGG | 0.583556 | 6_3:+3140937 | Msa0933940:CDS |
| TGAAGCAGAGAAGCTAGCAA+AGG | 0.583651 | 6_3:+3143747 | Msa0933940:CDS |
| AGTTATGCAGACTCATGTCT+AGG | 0.584860 | 6_3:+3143848 | Msa0933940:CDS |
| TGTTTATGAAAGTTGAAAGG+GGG | 0.595218 | 6_3:-3137242 | None:intergenic |
| TCCAGAGAGACCAGCAGGGT+CGG | 0.604189 | 6_3:-3140983 | None:intergenic |
| ATTTGTCCAGCACTTATCAC+AGG | 0.608102 | 6_3:+3143261 | Msa0933940:CDS |
| TATCTTTCACCGGAATCTAG+TGG | 0.614126 | 6_3:+3137458 | Msa0933940:CDS |
| ATGTTTATGAAAGTTGAAAG+GGG | 0.618438 | 6_3:-3137243 | None:intergenic |
| AGTAACCTAAGACCAAAAGA+TGG | 0.618500 | 6_3:-3137623 | None:intergenic |
| CACCGGAGAAAAGACGATGA+AGG | 0.622226 | 6_3:+3137495 | Msa0933940:CDS |
| CAATGTAACTGAGAATGTGA+TGG | 0.623543 | 6_3:+3142147 | Msa0933940:CDS |
| GGTATGCATTAGGCAAGATG+AGG | 0.624697 | 6_3:+3143184 | Msa0933940:CDS |
| GTATGCATTAGGCAAGATGA+GGG | 0.629882 | 6_3:+3143185 | Msa0933940:CDS |
| ACTACTCCTATTATTAACCA+TGG | 0.632241 | 6_3:+3142262 | Msa0933940:CDS |
| ATTCACTACTCCATGAGCCA+TGG | 0.641184 | 6_3:-3142279 | None:intergenic |
| AGCAGGGTCGGTAAATGCAG+AGG | 0.646459 | 6_3:-3140971 | None:intergenic |
| ATGCTTAGGGGTCTATGATG+TGG | 0.662252 | 6_3:+3143983 | Msa0933940:three_prime_UTR |
| GCCTAAAGAAAAGATATGTG+GGG | 0.665039 | 6_3:+3143780 | Msa0933940:CDS |
| ACCTTGGTTTGTGTCACTAG+TGG | 0.672627 | 6_3:+3137570 | Msa0933940:CDS |
| GAGTTGATAGAAAATAGATG+AGG | 0.674106 | 6_3:+3143959 | Msa0933940:three_prime_UTR |
| AATAGATGAGGTATGCTTAG+GGG | 0.689213 | 6_3:+3143971 | Msa0933940:three_prime_UTR |
| TGTATCCAGAGAGACCAGCA+GGG | 0.693157 | 6_3:-3140987 | None:intergenic |
| ACCACTAGTGACACAAACCA+AGG | 0.694749 | 6_3:-3137571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTTAATAAATTTATG+TGG | + | chr6_3:3138163-3138182 | Msa0933940:intron | 10.0% |
| !! | AAATGTTAATAAATTTATGT+GGG | + | chr6_3:3138164-3138183 | Msa0933940:intron | 10.0% |
| !!! | AATTTTTATTCTTTTTTGAT+TGG | + | chr6_3:3138614-3138633 | Msa0933940:intron | 10.0% |
| !!! | TATAATATTATGAATTTTTC+TGG | - | chr6_3:3138810-3138829 | None:intergenic | 10.0% |
| !!! | GTTAAAAAATTCTAATTTTT+TGG | + | chr6_3:3138932-3138951 | Msa0933940:intron | 10.0% |
| !!! | TAAAAAATTCTAATTTTTTG+GGG | + | chr6_3:3138934-3138953 | Msa0933940:intron | 10.0% |
| !!! | TAGTAATTGAAAATTTTATA+GGG | + | chr6_3:3139040-3139059 | Msa0933940:intron | 10.0% |
| !! | TGAATATATATAATATAAGT+CGG | - | chr6_3:3139636-3139655 | None:intergenic | 10.0% |
| !!! | TTTTAGTAATTTACAAATAT+TGG | - | chr6_3:3141247-3141266 | None:intergenic | 10.0% |
| !! | TTAAAATTACTAAAAATGAA+AGG | - | chr6_3:3141317-3141336 | None:intergenic | 10.0% |
| !! | ATTAAACACTTATTAAATTT+GGG | - | chr6_3:3141806-3141825 | None:intergenic | 10.0% |
| !! | AATTAAACACTTATTAAATT+TGG | - | chr6_3:3141807-3141826 | None:intergenic | 10.0% |
| !! | AATAAAGATATAAAGATAAT+TGG | - | chr6_3:3144064-3144083 | None:intergenic | 10.0% |
| !! | AATAAATAAGGATATGAATT+TGG | - | chr6_3:3137758-3137777 | None:intergenic | 15.0% |
| !!! | TTCATATCCTTATTTATTTA+AGG | + | chr6_3:3137760-3137779 | Msa0933940:intron | 15.0% |
| !! | CTATAAACCTTAAATAAATA+AGG | - | chr6_3:3137770-3137789 | None:intergenic | 15.0% |
| !! | TGAAAAATAATATGAAAACA+TGG | + | chr6_3:3138056-3138075 | Msa0933940:intron | 15.0% |
| !! | AATAAAACAAAATTGTAAGT+TGG | + | chr6_3:3138090-3138109 | Msa0933940:intron | 15.0% |
| !!! | AACTTTAGAATTAAAATTAG+TGG | + | chr6_3:3138269-3138288 | Msa0933940:intron | 15.0% |
| !!! | TATTAGTTTACTTTAAAAGA+GGG | - | chr6_3:3138757-3138776 | None:intergenic | 15.0% |
| !!! | ATATTAGTTTACTTTAAAAG+AGG | - | chr6_3:3138758-3138777 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTATATGTTTGA+TGG | + | chr6_3:3138881-3138900 | Msa0933940:intron | 15.0% |
| !!! | AAAAAATTCTAATTTTTTGG+GGG | + | chr6_3:3138935-3138954 | Msa0933940:intron | 15.0% |
| !!! | AAATTTTCAATTACTACTTT+TGG | - | chr6_3:3139036-3139055 | None:intergenic | 15.0% |
| !!! | GTAGTAATTGAAAATTTTAT+AGG | + | chr6_3:3139039-3139058 | Msa0933940:intron | 15.0% |
| !! | AAAATAACCTAAACATTATA+CGG | + | chr6_3:3139279-3139298 | Msa0933940:intron | 15.0% |
| !!! | TTTATTTTTTAAACATTGTG+TGG | + | chr6_3:3139830-3139849 | Msa0933940:intron | 15.0% |
| !!! | TTATTTTTTAAACATTGTGT+GGG | + | chr6_3:3139831-3139850 | Msa0933940:intron | 15.0% |
| !!! | TTAAGTTTTTTTTTTTGTTG+AGG | - | chr6_3:3140068-3140087 | None:intergenic | 15.0% |
| !!! | ATGTAACATAATTTTGAAAA+GGG | + | chr6_3:3140223-3140242 | Msa0933940:intron | 15.0% |
| !! | AATTAATAGTATATTGAGAT+AGG | + | chr6_3:3140450-3140469 | Msa0933940:intron | 15.0% |
| !! | TGATATTATCATATAATTTG+TGG | + | chr6_3:3140476-3140495 | Msa0933940:intron | 15.0% |
| !! | AATTGATATGATATATGATA+TGG | + | chr6_3:3140793-3140812 | Msa0933940:intron | 15.0% |
| !! | TTGTAATTAATTAATAATGC+AGG | + | chr6_3:3140820-3140839 | Msa0933940:intron | 15.0% |
| !! | TTCTATAAAATTGAGTTATA+TGG | + | chr6_3:3141210-3141229 | Msa0933940:intron | 15.0% |
| !! | TAATCTTAAATCTTACAATA+AGG | + | chr6_3:3141422-3141441 | Msa0933940:intron | 15.0% |
| !! | GTAATACTTCAAATATAATA+AGG | + | chr6_3:3141841-3141860 | Msa0933940:intron | 15.0% |
| !! | GTATAATATATAGAAATCAA+TGG | + | chr6_3:3142111-3142130 | Msa0933940:intron | 15.0% |
| !! | TTTATGACCTTAATAATTTA+AGG | + | chr6_3:3142398-3142417 | Msa0933940:intron | 15.0% |
| !! | TTATGACCTTAATAATTTAA+GGG | + | chr6_3:3142399-3142418 | Msa0933940:intron | 15.0% |
| !! | AATTAACCCTTAAATTATTA+AGG | - | chr6_3:3142408-3142427 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr6_3:3142885-3142904 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr6_3:3142884-3142903 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr6_3:3142663-3142682 | None:intergenic | 15.0% |
| !! | ATTCATATTTAATTCATTTC+AGG | + | chr6_3:3142705-3142724 | Msa0933940:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr6_3:3142794-3142813 | Msa0933940:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr6_3:3142884-3142903 | Msa0933940:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr6_3:3142885-3142904 | Msa0933940:intron | 15.0% |
| !! | AAAAAATTGATAGAAACTAT+TGG | + | chr6_3:3143492-3143511 | Msa0933940:intron | 15.0% |
| !! | TATGTTTATGAAAGTTGAAA+GGG | - | chr6_3:3137247-3137266 | None:intergenic | 20.0% |
| !! | ATATGTTTATGAAAGTTGAA+AGG | - | chr6_3:3137248-3137267 | None:intergenic | 20.0% |
| !! | AACTTTGTTCATCAAAAAAT+GGG | + | chr6_3:3137396-3137415 | Msa0933940:exon | 20.0% |
| !!! | AACATATGATTTTCTTTTCA+TGG | + | chr6_3:3138013-3138032 | Msa0933940:intron | 20.0% |
| !! | TAGTTTATCTTGATGAAATA+TGG | + | chr6_3:3138137-3138156 | Msa0933940:intron | 20.0% |
| !!! | GTTATCTTTTTGTTACATTA+AGG | + | chr6_3:3138376-3138395 | Msa0933940:intron | 20.0% |
| !! | GTAAATACATTCATTTAACT+AGG | + | chr6_3:3138496-3138515 | Msa0933940:intron | 20.0% |
| !! | TAAGACAATGAATTATGATA+TGG | + | chr6_3:3138547-3138566 | Msa0933940:intron | 20.0% |
| !! | AAGACAATGAATTATGATAT+GGG | + | chr6_3:3138548-3138567 | Msa0933940:intron | 20.0% |
| !!! | AGTTGAAGAAAAATTTTAGA+GGG | - | chr6_3:3138697-3138716 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGAAAAATTTTAG+AGG | - | chr6_3:3138698-3138717 | None:intergenic | 20.0% |
| !!! | TGGAAATGGAAAATTTTATA+GGG | - | chr6_3:3138726-3138745 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr6_3:3139100-3139119 | Msa0933940:intron | 20.0% |
| !!! | CTTTTCAAAATTATGTTACA+TGG | - | chr6_3:3140224-3140243 | None:intergenic | 20.0% |
| !!! | CATGTAACATAATTTTGAAA+AGG | + | chr6_3:3140222-3140241 | Msa0933940:intron | 20.0% |
| !! | AATTATAACACTATCTAATG+TGG | + | chr6_3:3140512-3140531 | Msa0933940:intron | 20.0% |
| !! | ATTATAACACTATCTAATGT+GGG | + | chr6_3:3140513-3140532 | Msa0933940:intron | 20.0% |
| !!! | CTTTTTACTCAATTCTATTT+TGG | - | chr6_3:3140611-3140630 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTGTATTCATTTA+TGG | + | chr6_3:3140652-3140671 | Msa0933940:intron | 20.0% |
| !! | TTTGTTTGTGTTTGTTTATT+TGG | + | chr6_3:3141025-3141044 | Msa0933940:intron | 20.0% |
| !!! | ATTGTAAGATTTAAGATTAG+AGG | - | chr6_3:3141421-3141440 | None:intergenic | 20.0% |
| !!! | ATGAAACTTTTTACGATAAT+TGG | - | chr6_3:3141481-3141500 | None:intergenic | 20.0% |
| !! | AAGCGATATATATACTTAAA+TGG | - | chr6_3:3142046-3142065 | None:intergenic | 20.0% |
| !! | AATGCAGAAAAACAAAATTA+GGG | - | chr6_3:3142502-3142521 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGA+GGG | - | chr6_3:3142535-3142554 | None:intergenic | 20.0% |
| !! | TTAAACAAATTTGAATTGAG+AGG | - | chr6_3:3142536-3142555 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr6_3:3142628-3142647 | None:intergenic | 20.0% |
| !!! | TTACAAGATCGTTATTTTAT+AGG | + | chr6_3:3142915-3142934 | Msa0933940:intron | 20.0% |
| !!! | TACAAGATCGTTATTTTATA+GGG | + | chr6_3:3142916-3142935 | Msa0933940:intron | 20.0% |
| !! | AATCAAACCAATCTATAAAT+TGG | - | chr6_3:3143029-3143048 | None:intergenic | 20.0% |
| !! | ATTGAATTAGACGAAAAATA+AGG | - | chr6_3:3143060-3143079 | None:intergenic | 20.0% |
| !!! | AAATATTGCTTTTGATGATA+TGG | + | chr6_3:3143154-3143173 | Msa0933940:intron | 20.0% |
| !! | AAAAAATTGGAACAAGAAAT+TGG | - | chr6_3:3143361-3143380 | None:intergenic | 20.0% |
| !!! | CTTCTTAAAGTTTGTTTATT+AGG | + | chr6_3:3143414-3143433 | Msa0933940:intron | 20.0% |
| !!! | ACAATTTAAAATGCAAATAC+AGG | + | chr6_3:3143580-3143599 | Msa0933940:intron | 20.0% |
| !!! | AATATGTAGTTTGTTTAGTA+AGG | + | chr6_3:3144020-3144039 | Msa0933940:three_prime_UTR | 20.0% |
| ! | TATGGTTAAGAAAGTTGAAA+GGG | - | chr6_3:3137284-3137303 | None:intergenic | 25.0% |
| ! | ATATGGTTAAGAAAGTTGAA+AGG | - | chr6_3:3137285-3137304 | None:intergenic | 25.0% |
| !!! | TCAACTATTTTTCTTGTACT+TGG | - | chr6_3:3137322-3137341 | None:intergenic | 25.0% |
| ! | GTTAGGAATATGGAAAATAA+TGG | - | chr6_3:3137348-3137367 | None:intergenic | 25.0% |
| ! | ATGATATGTAGTTAGGAATA+TGG | - | chr6_3:3137358-3137377 | None:intergenic | 25.0% |
| ! | TTTGGTTATGATATGTAGTT+AGG | - | chr6_3:3137365-3137384 | None:intergenic | 25.0% |
| ! | CAACTTTGTTCATCAAAAAA+TGG | + | chr6_3:3137395-3137414 | Msa0933940:exon | 25.0% |
| !!! | AAAAACAGTTTTGTTCATGA+GGG | + | chr6_3:3137967-3137986 | Msa0933940:intron | 25.0% |
| !! | TATGATTTTCTTTTCATGGT+AGG | + | chr6_3:3138017-3138036 | Msa0933940:intron | 25.0% |
| ! | ATAATATGAAAACATGGAAG+AGG | + | chr6_3:3138062-3138081 | Msa0933940:intron | 25.0% |
| !! | AAAACAAAATTGTAAGTTGG+TGG | + | chr6_3:3138093-3138112 | Msa0933940:intron | 25.0% |
| ! | GTTAATAAATTTATGTGGGT+AGG | + | chr6_3:3138168-3138187 | Msa0933940:intron | 25.0% |
| ! | TAGGTATATGATAGAAATAG+AGG | + | chr6_3:3138187-3138206 | Msa0933940:intron | 25.0% |
| ! | AGGTATATGATAGAAATAGA+GGG | + | chr6_3:3138188-3138207 | Msa0933940:intron | 25.0% |
| ! | TACTTTATAGATTGTAGATG+TGG | + | chr6_3:3138325-3138344 | Msa0933940:intron | 25.0% |
| ! | TGTTACATTAAGGTAGAATT+TGG | + | chr6_3:3138386-3138405 | Msa0933940:intron | 25.0% |
| !!! | TTCTTTTTTGATTGGTTGAA+AGG | + | chr6_3:3138622-3138641 | Msa0933940:intron | 25.0% |
| !!! | TCTTTTTTGATTGGTTGAAA+GGG | + | chr6_3:3138623-3138642 | Msa0933940:intron | 25.0% |
| !! | GAAAGGGTTAAATTTCTTTT+TGG | + | chr6_3:3138639-3138658 | Msa0933940:intron | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+AGG | - | chr6_3:3139099-3139118 | None:intergenic | 25.0% |
| !! | GTGGAAATGGAAAATTTTAT+AGG | - | chr6_3:3138727-3138746 | None:intergenic | 25.0% |
| !! | AAATTTTCCATTTCCACTTT+TGG | + | chr6_3:3138730-3138749 | Msa0933940:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr6_3:3139068-3139087 | Msa0933940:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr6_3:3139069-3139088 | Msa0933940:intron | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+AGG | + | chr6_3:3139099-3139118 | Msa0933940:intron | 25.0% |
| !!! | GAATGGGTTAAATATGTTTT+TGG | - | chr6_3:3139127-3139146 | None:intergenic | 25.0% |
| ! | ATGACAAAAAGAAGAAGAAT+GGG | - | chr6_3:3139143-3139162 | None:intergenic | 25.0% |
| ! | AATGACAAAAAGAAGAAGAA+TGG | - | chr6_3:3139144-3139163 | None:intergenic | 25.0% |
| ! | ACTTGAATAATCAATATGCA+TGG | - | chr6_3:3139527-3139546 | None:intergenic | 25.0% |
| !! | CTCCAATTTTGAATAAGAAT+TGG | + | chr6_3:3139547-3139566 | Msa0933940:intron | 25.0% |
| ! | GACCAATTCTTATTCAAAAT+TGG | - | chr6_3:3139552-3139571 | None:intergenic | 25.0% |
| !!! | TGTGAGTTTCTTATTTTTTC+TGG | - | chr6_3:3139958-3139977 | None:intergenic | 25.0% |
| ! | AAAAATAAGAAACTCACATG+TGG | + | chr6_3:3139960-3139979 | Msa0933940:intron | 25.0% |
| ! | AGAAATAAAGAAATCGACAT+AGG | - | chr6_3:3139997-3140016 | None:intergenic | 25.0% |
| !!! | AAAAGTCTGAACTTTTTTGA+AGG | + | chr6_3:3140303-3140322 | Msa0933940:intron | 25.0% |
| ! | AACTTATAATGTCTCATAGT+CGG | - | chr6_3:3140351-3140370 | None:intergenic | 25.0% |
| ! | AATTGAGTAAAAAGCTAGTT+AGG | + | chr6_3:3140617-3140636 | Msa0933940:intron | 25.0% |
| !!! | CCAAATTATAGTAGTTTGTT+TGG | - | chr6_3:3140699-3140718 | None:intergenic | 25.0% |
| ! | CCAAACAAACTACTATAATT+TGG | + | chr6_3:3140696-3140715 | Msa0933940:intron | 25.0% |
| ! | GATATGATATATGATATGGT+TGG | + | chr6_3:3140797-3140816 | Msa0933940:intron | 25.0% |
| ! | ATAGAGAAATTTAGGGAAAT+AGG | + | chr6_3:3140847-3140866 | Msa0933940:CDS | 25.0% |
| ! | TGAAGAGATGAGAAATAATT+TGG | + | chr6_3:3140873-3140892 | Msa0933940:CDS | 25.0% |
| ! | TGAACTAATAGTTTAGCTAA+TGG | - | chr6_3:3141142-3141161 | None:intergenic | 25.0% |
| ! | TAGCTAAACTATTAGTTCAT+TGG | + | chr6_3:3141143-3141162 | Msa0933940:intron | 25.0% |
| ! | AAATTGAGTTATATGGTCTA+AGG | + | chr6_3:3141217-3141236 | Msa0933940:intron | 25.0% |
| ! | ATTTGACGAAACAAATAAAC+AGG | - | chr6_3:3141393-3141412 | None:intergenic | 25.0% |
| !!! | TTTTTAAAGTGTTAGTCCAT+AGG | + | chr6_3:3141502-3141521 | Msa0933940:intron | 25.0% |
| !! | AGAAGATATTTTTCCTCAAA+GGG | - | chr6_3:3141596-3141615 | None:intergenic | 25.0% |
| !! | AAGAAGATATTTTTCCTCAA+AGG | - | chr6_3:3141597-3141616 | None:intergenic | 25.0% |
| !! | AAAGTGTCATTCATATTATG+TGG | - | chr6_3:3141643-3141662 | None:intergenic | 25.0% |
| !!! | ATGAATGACACTTTTTGTAT+TGG | + | chr6_3:3141649-3141668 | Msa0933940:intron | 25.0% |
| !!! | TGAATGACACTTTTTGTATT+GGG | + | chr6_3:3141650-3141669 | Msa0933940:intron | 25.0% |
| ! | AACACTTATTAAATTTGGGT+TGG | - | chr6_3:3141802-3141821 | None:intergenic | 25.0% |
| !!! | GCTTTTTTTTTTTTTCCACA+TGG | - | chr6_3:3141904-3141923 | None:intergenic | 25.0% |
| !! | GTCAAAAGTTTAAAATTGCA+AGG | - | chr6_3:3141938-3141957 | None:intergenic | 25.0% |
| ! | AAGGTAATATAAAGCTGTAA+AGG | - | chr6_3:3141969-3141988 | None:intergenic | 25.0% |
| ! | GCTTTATATTACCTTTAACT+TGG | + | chr6_3:3141974-3141993 | Msa0933940:intron | 25.0% |
| ! | CAATAATTACACCAAGTTAA+AGG | - | chr6_3:3141988-3142007 | None:intergenic | 25.0% |
| !!! | AACACACATCTTTTAATTGA+AGG | - | chr6_3:3142190-3142209 | None:intergenic | 25.0% |
| !!! | TCATTTAGAACCTTTTATGT+AGG | + | chr6_3:3142362-3142381 | Msa0933940:intron | 25.0% |
| ! | CAATGCAGAAAAACAAAATT+AGG | - | chr6_3:3142503-3142522 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr6_3:3142822-3142841 | Msa0933940:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr6_3:3142823-3142842 | Msa0933940:intron | 25.0% |
| ! | AAATCGACCAATTTATAGAT+TGG | + | chr6_3:3143019-3143038 | Msa0933940:intron | 25.0% |
| ! | TTTAAAAATCAGATCCACTA+CGG | - | chr6_3:3143136-3143155 | None:intergenic | 25.0% |
| ! | TCACAAAAAATGTACTCAAA+TGG | + | chr6_3:3143604-3143623 | Msa0933940:CDS | 25.0% |
| ! | GAAATGAAAGAAAATGCTTA+TGG | + | chr6_3:3143685-3143704 | Msa0933940:CDS | 25.0% |
| ! | TGGTTTGTGTATGGTTTATA+TGG | - | chr6_3:3137302-3137321 | None:intergenic | 30.0% |
| ATGAACAAAGTTGAGAACAA+TGG | - | chr6_3:3137388-3137407 | None:intergenic | 30.0% | |
| AACATCTTCATCATCTAAAG+AGG | - | chr6_3:3137544-3137563 | None:intergenic | 30.0% | |
| TCTTTAGATGATGAAGATGT+TGG | + | chr6_3:3137543-3137562 | Msa0933940:CDS | 30.0% | |
| ! | ACTAGTGGTGTTTCTTATTT+GGG | + | chr6_3:3137585-3137604 | Msa0933940:CDS | 30.0% |
| TTATCATCTGAGCTAAATTG+CGG | + | chr6_3:3137935-3137954 | Msa0933940:intron | 30.0% | |
| !!! | GAAAAACAGTTTTGTTCATG+AGG | + | chr6_3:3137966-3137985 | Msa0933940:intron | 30.0% |
| TACGAAGTTGTTGAAATTTG+TGG | - | chr6_3:3138233-3138252 | None:intergenic | 30.0% | |
| ACAAATTTCAACAACTTCGT+AGG | + | chr6_3:3138232-3138251 | Msa0933940:intron | 30.0% | |
| CAAATTTCAACAACTTCGTA+GGG | + | chr6_3:3138233-3138252 | Msa0933940:intron | 30.0% | |
| AATTAAAATTAGTGGTCCTC+AGG | + | chr6_3:3138277-3138296 | Msa0933940:intron | 30.0% | |
| GAAGAAAAAAAAATGTCCTG+AGG | - | chr6_3:3138296-3138315 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr6_3:3139055-3139074 | Msa0933940:intron | 30.0% | |
| ! | CAAGGTCAACTGAATATTTT+TGG | + | chr6_3:3139247-3139266 | Msa0933940:intron | 30.0% |
| ACCAAAAAAGTGGAGAAAAA+TGG | - | chr6_3:3139363-3139382 | None:intergenic | 30.0% | |
| TACGAAAAAGACCAAAAAAG+TGG | - | chr6_3:3139373-3139392 | None:intergenic | 30.0% | |
| TTTCTACGTGTTTGATCATA+TGG | + | chr6_3:3139661-3139680 | Msa0933940:intron | 30.0% | |
| !!! | CACATATGTGAGCTTTTTTT+GGG | - | chr6_3:3139931-3139950 | None:intergenic | 30.0% |
| ATAAAGAAATCGACATAGGT+GGG | - | chr6_3:3139993-3140012 | None:intergenic | 30.0% | |
| AATAAAGAAATCGACATAGG+TGG | - | chr6_3:3139994-3140013 | None:intergenic | 30.0% | |
| ! | TGATTAGTCACATACATTGA+GGG | - | chr6_3:3140144-3140163 | None:intergenic | 30.0% |
| ! | TTGATTAGTCACATACATTG+AGG | - | chr6_3:3140145-3140164 | None:intergenic | 30.0% |
| ! | TATAATGCTACTTAAGCAAG+TGG | - | chr6_3:3140168-3140187 | None:intergenic | 30.0% |
| GTAGCATTATATTGAGTTTG+TGG | + | chr6_3:3140177-3140196 | Msa0933940:intron | 30.0% | |
| AGGAGACATAGAGAAATTTA+GGG | + | chr6_3:3140840-3140859 | Msa0933940:intron | 30.0% | |
| !! | GCTAAATGATGTTGATAGTT+TGG | + | chr6_3:3140912-3140931 | Msa0933940:CDS | 30.0% |
| ! | TTTTATAGAAACGAGTCACA+TGG | - | chr6_3:3141200-3141219 | None:intergenic | 30.0% |
| CGATAATTGGCATTAATCTT+CGG | - | chr6_3:3141468-3141487 | None:intergenic | 30.0% | |
| GTCATTCATATTATGTGGTA+GGG | - | chr6_3:3141638-3141657 | None:intergenic | 30.0% | |
| TGTCATTCATATTATGTGGT+AGG | - | chr6_3:3141639-3141658 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCACATGGTGT+AGG | - | chr6_3:3141898-3141917 | None:intergenic | 30.0% |
| GGTTAATAATAGGAGTAGTA+AGG | - | chr6_3:3142261-3142280 | None:intergenic | 30.0% | |
| ACTACTCCTATTATTAACCA+TGG | + | chr6_3:3142262-3142281 | Msa0933940:CDS | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr6_3:3142442-3142461 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr6_3:3142443-3142462 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | chr6_3:3142760-3142779 | None:intergenic | 30.0% | |
| AAGAAATTGGACAATGACTT+TGG | - | chr6_3:3143348-3143367 | None:intergenic | 30.0% | |
| AGTATGTAGTTGTAAACTCT+AGG | + | chr6_3:3143521-3143540 | Msa0933940:intron | 30.0% | |
| ! | AACAGTTGATGTAAAGAAAG+TGG | + | chr6_3:3143636-3143655 | Msa0933940:CDS | 30.0% |
| ATGCCTAAAGAAAAGATATG+TGG | + | chr6_3:3143778-3143797 | Msa0933940:CDS | 30.0% | |
| TGCCTAAAGAAAAGATATGT+GGG | + | chr6_3:3143779-3143798 | Msa0933940:CDS | 30.0% | |
| AGATGGAAATCATGAAATCA+TGG | + | chr6_3:3143896-3143915 | Msa0933940:exon | 30.0% | |
| ATTTGGCATTTCTTTGTCTT+AGG | + | chr6_3:3143937-3143956 | Msa0933940:three_prime_UTR | 30.0% | |
| !! | GAGTTGATAGAAAATAGATG+AGG | + | chr6_3:3143959-3143978 | Msa0933940:three_prime_UTR | 30.0% |
| AAAATAGATGAGGTATGCTT+AGG | + | chr6_3:3143969-3143988 | Msa0933940:three_prime_UTR | 30.0% | |
| AAATAGATGAGGTATGCTTA+GGG | + | chr6_3:3143970-3143989 | Msa0933940:three_prime_UTR | 30.0% | |
| AGTTGAAAGGGAGTTATAGA+AGG | - | chr6_3:3137272-3137291 | None:intergenic | 35.0% | |
| !! | TCTTGTACTTGGTTTGTGTA+TGG | - | chr6_3:3137311-3137330 | None:intergenic | 35.0% |
| CAAAGTTGAGAACAATGGTT+TGG | - | chr6_3:3137383-3137402 | None:intergenic | 35.0% | |
| TGAAGATGTTGGAAAAACCT+TGG | + | chr6_3:3137554-3137573 | Msa0933940:CDS | 35.0% | |
| CACTAGTGGTGTTTCTTATT+TGG | + | chr6_3:3137584-3137603 | Msa0933940:CDS | 35.0% | |
| ! | TTCTTATTTGGGTCTTGCTT+TGG | + | chr6_3:3137596-3137615 | Msa0933940:CDS | 35.0% |
| AGTAACCTAAGACCAAAAGA+TGG | - | chr6_3:3137626-3137645 | None:intergenic | 35.0% | |
| TAAGAAAGAGAAACCAACCT+GGG | - | chr6_3:3137671-3137690 | None:intergenic | 35.0% | |
| TTAAGAAAGAGAAACCAACC+TGG | - | chr6_3:3137672-3137691 | None:intergenic | 35.0% | |
| !! | TGTGAAGAAGAAAGTATTGC+AGG | + | chr6_3:3137880-3137899 | Msa0933940:intron | 35.0% |
| !! | AATTGTAAGTTGGTGGCAAT+TGG | + | chr6_3:3138100-3138119 | Msa0933940:intron | 35.0% |
| TTTAAAAGAGGGACCAAAAG+TGG | - | chr6_3:3138746-3138765 | None:intergenic | 35.0% | |
| !!! | GCCATTTTTCTCCACTTTTT+TGG | + | chr6_3:3139359-3139378 | Msa0933940:intron | 35.0% |
| ! | TTTTCGTAGCAACACTCTTT+GGG | - | chr6_3:3139747-3139766 | None:intergenic | 35.0% |
| GTTGCTACGAAAACTATGAT+CGG | + | chr6_3:3139754-3139773 | Msa0933940:intron | 35.0% | |
| !!! | CCACATATGTGAGCTTTTTT+TGG | - | chr6_3:3139932-3139951 | None:intergenic | 35.0% |
| CCAAAAAAAGCTCACATATG+TGG | + | chr6_3:3139929-3139948 | Msa0933940:intron | 35.0% | |
| TAAAGAAATCGACATAGGTG+GGG | - | chr6_3:3139992-3140011 | None:intergenic | 35.0% | |
| !! | GTTGAGATTAGTCTCATAGT+CGG | + | chr6_3:3140277-3140296 | Msa0933940:intron | 35.0% |
| TTATCTTCTCCTTTACAAGC+TGG | - | chr6_3:3140423-3140442 | None:intergenic | 35.0% | |
| CAGGAGACATAGAGAAATTT+AGG | + | chr6_3:3140839-3140858 | Msa0933940:intron | 35.0% | |
| !! | TAGTTTGGAGAAAGCATTTG+AGG | + | chr6_3:3140927-3140946 | Msa0933940:CDS | 35.0% |
| !! | AGTTTGGAGAAAGCATTTGA+GGG | + | chr6_3:3140928-3140947 | Msa0933940:CDS | 35.0% |
| !!! | TGTTTTAAAAATCGACTCCG+TGG | + | chr6_3:3141093-3141112 | Msa0933940:intron | 35.0% |
| TTGAGTTATATGGTCTAAGG+TGG | + | chr6_3:3141220-3141239 | Msa0933940:intron | 35.0% | |
| TAGCAGATCACCTATAAAGA+TGG | + | chr6_3:3141526-3141545 | Msa0933940:intron | 35.0% | |
| TGTATTGGGAGACAAGAATT+TGG | + | chr6_3:3141664-3141683 | Msa0933940:intron | 35.0% | |
| !! | GATTCTAGTCTTGTAGACTT+TGG | + | chr6_3:3141701-3141720 | Msa0933940:intron | 35.0% |
| ATCTATTGAACTACATGTCG+TGG | - | chr6_3:3141727-3141746 | None:intergenic | 35.0% | |
| ! | TAATTGATTCCTACACCATG+TGG | + | chr6_3:3141886-3141905 | Msa0933940:intron | 35.0% |
| CAATGTAACTGAGAATGTGA+TGG | + | chr6_3:3142147-3142166 | Msa0933940:CDS | 35.0% | |
| CATGAGCCATGGTTAATAAT+AGG | - | chr6_3:3142271-3142290 | None:intergenic | 35.0% | |
| CTATTATTAACCATGGCTCA+TGG | + | chr6_3:3142269-3142288 | Msa0933940:CDS | 35.0% | |
| ATCACTCTGCATAGACAAAA+AGG | + | chr6_3:3142300-3142319 | Msa0933940:CDS | 35.0% | |
| TGTCATCTCACCTACATAAA+AGG | - | chr6_3:3142375-3142394 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr6_3:3142900-3142919 | None:intergenic | 35.0% | |
| GCTTCAAATCACGCTTTAAT+TGG | - | chr6_3:3143102-3143121 | None:intergenic | 35.0% | |
| !! | TTTTGATGATATGGCAGCTA+TGG | + | chr6_3:3143163-3143182 | Msa0933940:intron | 35.0% |
| GAGTTTCAAACCTCTTTCTT+TGG | - | chr6_3:3143235-3143254 | None:intergenic | 35.0% | |
| TTGGTTACATAGTACCTTTG+AGG | - | chr6_3:3143329-3143348 | None:intergenic | 35.0% | |
| CTCTAGGTGAAAGTTTACAT+TGG | + | chr6_3:3143537-3143556 | Msa0933940:intron | 35.0% | |
| GCCTAAAGAAAAGATATGTG+GGG | + | chr6_3:3143780-3143799 | Msa0933940:CDS | 35.0% | |
| ! | TCCCCACATATCTTTTCTTT+AGG | - | chr6_3:3143784-3143803 | None:intergenic | 35.0% |
| ! | TACTCACTAAAGCACCTAAT+TGG | - | chr6_3:3143874-3143893 | None:intergenic | 35.0% |
| GTGCTTTAGTGAGTATTAGA+TGG | + | chr6_3:3143879-3143898 | Msa0933940:exon | 35.0% | |
| ATGCCTTATGTCGTAAGATT+TGG | + | chr6_3:3143920-3143939 | Msa0933940:three_prime_UTR | 35.0% | |
| ATGCCAAATCTTACGACATA+AGG | - | chr6_3:3143926-3143945 | None:intergenic | 35.0% | |
| AATAGATGAGGTATGCTTAG+GGG | + | chr6_3:3143971-3143990 | Msa0933940:three_prime_UTR | 35.0% | |
| CAGAGCTTGATATCTTTCAC+CGG | + | chr6_3:3137448-3137467 | Msa0933940:CDS | 40.0% | |
| TATCTTTCACCGGAATCTAG+TGG | + | chr6_3:3137458-3137477 | Msa0933940:CDS | 40.0% | |
| ! | ATCCTTCATCGTCTTTTCTC+CGG | - | chr6_3:3137500-3137519 | None:intergenic | 40.0% |
| ! | TGCTTTGGTCAACCATCTTT+TGG | + | chr6_3:3137611-3137630 | Msa0933940:CDS | 40.0% |
| !! | GTCAACCATCTTTTGGTCTT+AGG | + | chr6_3:3137618-3137637 | Msa0933940:CDS | 40.0% |
| CGAATAATTGTTGACAACCC+AGG | + | chr6_3:3137651-3137670 | Msa0933940:CDS | 40.0% | |
| TAATTGTTGACAACCCAGGT+TGG | + | chr6_3:3137655-3137674 | Msa0933940:intron | 40.0% | |
| GAGGGACTAAAACGAAAAGT+TGG | - | chr6_3:3139087-3139106 | None:intergenic | 40.0% | |
| GAGGGACTAAAACGAAAAGT+TGG | + | chr6_3:3139087-3139106 | Msa0933940:intron | 40.0% | |
| CGTTGTGCCGTATAATGTTT+AGG | - | chr6_3:3139289-3139308 | None:intergenic | 40.0% | |
| ! | GTTTTCGTAGCAACACTCTT+TGG | - | chr6_3:3139748-3139767 | None:intergenic | 40.0% |
| !! | ACATACATTGAGGGCATCTA+GGG | - | chr6_3:3140135-3140154 | None:intergenic | 40.0% |
| ! | AGTCATTTGGCTCAATAACG+TGG | - | chr6_3:3141174-3141193 | None:intergenic | 40.0% |
| AGTCACATGGTTGAGTCATT+TGG | - | chr6_3:3141187-3141206 | None:intergenic | 40.0% | |
| TCTTCGGAAGTAGAAGTTTG+TGG | - | chr6_3:3141452-3141471 | None:intergenic | 40.0% | |
| ATAGGTGATCTGCTATCCTA+TGG | - | chr6_3:3141521-3141540 | None:intergenic | 40.0% | |
| ! | TTTTTCCTCAAAGGGTCTTC+AGG | - | chr6_3:3141588-3141607 | None:intergenic | 40.0% |
| !!! | TGGGTTGGTTTTTAGTCACT+TGG | - | chr6_3:3141787-3141806 | None:intergenic | 40.0% |
| CATCACTAGCTGCTTGTATT+TGG | + | chr6_3:3142215-3142234 | Msa0933940:CDS | 40.0% | |
| AAAAACTAGACCGAACCAGT+CGG | + | chr6_3:3142978-3142997 | Msa0933940:intron | 40.0% | |
| AATCAGATCCACTACGGAAT+TGG | - | chr6_3:3143130-3143149 | None:intergenic | 40.0% | |
| GTATGCATTAGGCAAGATGA+GGG | + | chr6_3:3143185-3143204 | Msa0933940:CDS | 40.0% | |
| TGGAGAATAGCCAAAGAAAG+AGG | + | chr6_3:3143222-3143241 | Msa0933940:CDS | 40.0% | |
| !! | TGTGATAAGTGCTGGACAAA+TGG | - | chr6_3:3143262-3143281 | None:intergenic | 40.0% |
| ATTTGTCCAGCACTTATCAC+AGG | + | chr6_3:3143261-3143280 | Msa0933940:CDS | 40.0% | |
| ! | GGTAAGCAATTGTTGCTGTT+GGG | - | chr6_3:3143308-3143327 | None:intergenic | 40.0% |
| AGGTAAGCAATTGTTGCTGT+TGG | - | chr6_3:3143309-3143328 | None:intergenic | 40.0% | |
| GCAACAATTGCTTACCTCAA+AGG | + | chr6_3:3143312-3143331 | Msa0933940:CDS | 40.0% | |
| GAGAAGCTAGCAAAGGATAT+TGG | + | chr6_3:3143754-3143773 | Msa0933940:CDS | 40.0% | |
| AGTTATGCAGACTCATGTCT+AGG | + | chr6_3:3143848-3143867 | Msa0933940:CDS | 40.0% | |
| !! | ACCTTGGTTTGTGTCACTAG+TGG | + | chr6_3:3137570-3137589 | Msa0933940:CDS | 45.0% |
| ACCACTAGTGACACAAACCA+AGG | - | chr6_3:3137574-3137593 | None:intergenic | 45.0% | |
| AGAGGGACCAAAAGTGGAAA+TGG | - | chr6_3:3138740-3138759 | None:intergenic | 45.0% | |
| GACATGTGACTATGTGAGTG+TGG | + | chr6_3:3139319-3139338 | Msa0933940:intron | 45.0% | |
| TGACTATGTGAGTGTGGTGT+AGG | + | chr6_3:3139325-3139344 | Msa0933940:intron | 45.0% | |
| GACTATGTGAGTGTGGTGTA+GGG | + | chr6_3:3139326-3139345 | Msa0933940:intron | 45.0% | |
| !! | TTGAGGGCATCTAGGGTTTA+GGG | - | chr6_3:3140128-3140147 | None:intergenic | 45.0% |
| !! | ATTGAGGGCATCTAGGGTTT+AGG | - | chr6_3:3140129-3140148 | None:intergenic | 45.0% |
| !! | CACATACATTGAGGGCATCT+AGG | - | chr6_3:3140136-3140155 | None:intergenic | 45.0% |
| ! | AACACTAATGTCGACTGACG+CGG | + | chr6_3:3141266-3141285 | Msa0933940:intron | 45.0% |
| CACCTATAAAGATGGTCCAC+CGG | + | chr6_3:3141534-3141553 | Msa0933940:intron | 45.0% | |
| TGTACACATTGCCAAAAGGC+CGG | - | chr6_3:3141556-3141575 | None:intergenic | 45.0% | |
| AGGGTGTACACATTGCCAAA+AGG | - | chr6_3:3141560-3141579 | None:intergenic | 45.0% | |
| !! | AAAGGGTCTTCAGGTTGGTA+GGG | - | chr6_3:3141579-3141598 | None:intergenic | 45.0% |
| ATTCACTACTCCATGAGCCA+TGG | - | chr6_3:3142282-3142301 | None:intergenic | 45.0% | |
| TGGCAGCTATGGTATGCATT+AGG | + | chr6_3:3143174-3143193 | Msa0933940:intron | 45.0% | |
| GGTATGCATTAGGCAAGATG+AGG | + | chr6_3:3143184-3143203 | Msa0933940:CDS | 45.0% | |
| ! | CAGGTCCTGACTTTTGTCAT+AGG | + | chr6_3:3143280-3143299 | Msa0933940:CDS | 45.0% |
| GGGTTCCTATGACAAAAGTC+AGG | - | chr6_3:3143288-3143307 | None:intergenic | 45.0% | |
| AGCTCATGCATGTGTGTTCA+AGG | + | chr6_3:3143663-3143682 | Msa0933940:CDS | 45.0% | |
| TGAAGCAGAGAAGCTAGCAA+AGG | + | chr6_3:3143747-3143766 | Msa0933940:CDS | 45.0% | |
| GACTCATGTCTAGGCCAATT+AGG | + | chr6_3:3143857-3143876 | Msa0933940:CDS | 45.0% | |
| ATGCTTAGGGGTCTATGATG+TGG | + | chr6_3:3143983-3144002 | Msa0933940:three_prime_UTR | 45.0% | |
| !!! | AAAAAATTCTAATTTTTTTT+GGG | - | chr6_3:3138842-3138861 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | - | chr6_3:3138843-3138862 | None:intergenic | 5.0% |
| !!! | TTAAAAAATTCTAATTTTTT+GGG | + | chr6_3:3138933-3138952 | Msa0933940:intron | 5.0% |
| !! | AAAAAAATTAACTTAAAAAT+AGG | + | chr6_3:3139008-3139027 | Msa0933940:intron | 5.0% |
| !! | AAAAAATTAACTTAAAAATA+GGG | + | chr6_3:3139009-3139028 | Msa0933940:intron | 5.0% |
| !!! | TCAAATAAAATAATAATTTT+AGG | + | chr6_3:3139190-3139209 | Msa0933940:intron | 5.0% |
| !!! | TAAAATTTTATTTTTATTCA+AGG | + | chr6_3:3139229-3139248 | Msa0933940:intron | 5.0% |
| !!! | TATATATACTTTTTTTTTTT+TGG | - | chr6_3:3142071-3142090 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr6_3:3142855-3142874 | Msa0933940:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr6_3:3142856-3142875 | Msa0933940:intron | 5.0% |
| !!! | TAAAATATTGATTAAATTAT+GGG | - | chr6_3:3142959-3142978 | None:intergenic | 5.0% |
| !!! | TTAAAATATTGATTAAATTA+TGG | - | chr6_3:3142960-3142979 | None:intergenic | 5.0% |
| !! | TAAACAAAAAAAAAAAAAAT+TGG | - | chr6_3:3143374-3143393 | None:intergenic | 5.0% |
| ! | GTCTTTTCTCCGGTGTATGC+CGG | - | chr6_3:3137490-3137509 | None:intergenic | 50.0% |
| CACCGGAGAAAAGACGATGA+AGG | + | chr6_3:3137495-3137514 | Msa0933940:CDS | 50.0% | |
| TGTGGTGTAGGGTACACGTA+GGG | + | chr6_3:3139337-3139356 | Msa0933940:intron | 50.0% | |
| !! | TGAGGGCATCTAGGGTTTAG+GGG | - | chr6_3:3140127-3140146 | None:intergenic | 50.0% |
| TGCATGCTGCCAGCTTGTAA+AGG | + | chr6_3:3140411-3140430 | Msa0933940:intron | 50.0% | |
| ! | AAAGCATTTGAGGGCTGTCG+TGG | + | chr6_3:3140937-3140956 | Msa0933940:CDS | 50.0% |
| TGTATCCAGAGAGACCAGCA+GGG | - | chr6_3:3140990-3141009 | None:intergenic | 50.0% | |
| CCTAGTACCCTTGTCTGAGT+CGG | - | chr6_3:3141119-3141138 | None:intergenic | 50.0% | |
| !! | CAAAGGGTCTTCAGGTTGGT+AGG | - | chr6_3:3141580-3141599 | None:intergenic | 50.0% |
| ACCAACCTGAAGACCCTTTG+AGG | + | chr6_3:3141580-3141599 | Msa0933940:intron | 50.0% | |
| TCCTCAAAGGGTCTTCAGGT+TGG | - | chr6_3:3141584-3141603 | None:intergenic | 50.0% | |
| ! | ACCAGTTGAACCGACTGGTT+CGG | - | chr6_3:3142991-3143010 | None:intergenic | 50.0% |
| ACTCAACCAGTTGAACCGAC+TGG | - | chr6_3:3142996-3143015 | None:intergenic | 50.0% | |
| ! | GTCGGTTCAACTGGTTGAGT+TGG | + | chr6_3:3142996-3143015 | Msa0933940:intron | 50.0% |
| AGCTCTCACCAATTCCGTAG+TGG | + | chr6_3:3143119-3143138 | Msa0933940:intron | 50.0% | |
| AGGCAAGATGAGGGCTGAAA+AGG | + | chr6_3:3143194-3143213 | Msa0933940:CDS | 50.0% | |
| TCAGGACCTGTGATAAGTGC+TGG | - | chr6_3:3143270-3143289 | None:intergenic | 50.0% | |
| GTGTGGTGTAGGGTACACGT+AGG | + | chr6_3:3139336-3139355 | Msa0933940:intron | 55.0% | |
| AGCAGGGTCGGTAAATGCAG+AGG | - | chr6_3:3140974-3140993 | None:intergenic | 55.0% | |
| TCTGCATTTACCGACCCTGC+TGG | + | chr6_3:3140973-3140992 | Msa0933940:CDS | 55.0% | |
| GTGTATCCAGAGAGACCAGC+AGG | - | chr6_3:3140991-3141010 | None:intergenic | 55.0% | |
| !! | CCGACTCAGACAAGGGTACT+AGG | + | chr6_3:3141116-3141135 | Msa0933940:intron | 55.0% |
| GGCCGGTGGACCATCTTTAT+AGG | - | chr6_3:3141539-3141558 | None:intergenic | 55.0% | |
| ! | AAGATGGTCCACCGGCCTTT+TGG | + | chr6_3:3141542-3141561 | Msa0933940:intron | 55.0% |
| ACACATTGCCAAAAGGCCGG+TGG | - | chr6_3:3141553-3141572 | None:intergenic | 55.0% | |
| ! | ACCGAACCAGTCGGTTCAAC+TGG | + | chr6_3:3142987-3143006 | Msa0933940:intron | 55.0% |
| TGAGGGCTGAAAAGGCTGCT+TGG | + | chr6_3:3143202-3143221 | Msa0933940:CDS | 55.0% | |
| CGGCAGCAGCCACTAGATTC+CGG | - | chr6_3:3137470-3137489 | None:intergenic | 60.0% | |
| CGGAATCTAGTGGCTGCTGC+CGG | + | chr6_3:3137468-3137487 | Msa0933940:CDS | 60.0% | |
| TCCAGAGAGACCAGCAGGGT+CGG | - | chr6_3:3140986-3141005 | None:intergenic | 60.0% | |
| ! | TCCGTGGCCGACTCAGACAA+GGG | + | chr6_3:3141109-3141128 | Msa0933940:intron | 60.0% |
| ACCCTTGTCTGAGTCGGCCA+CGG | - | chr6_3:3141113-3141132 | None:intergenic | 60.0% | |
| TGGCTGCTGCCGGCATACAC+CGG | + | chr6_3:3137478-3137497 | Msa0933940:CDS | 65.0% | |
| ! | ACCGACCCTGCTGGTCTCTC+TGG | + | chr6_3:3140982-3141001 | Msa0933940:CDS | 65.0% |
| ! | CTCCGTGGCCGACTCAGACA+AGG | + | chr6_3:3141108-3141127 | Msa0933940:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 3137244 | 3144103 | 3137244 | ID=Msa0933940;Name=Msa0933940 |
| chr6_3 | mRNA | 3137244 | 3144103 | 3137244 | ID=Msa0933940-mRNA-1;Parent=Msa0933940;Name=Msa0933940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|1|1|5|206|358 |
| chr6_3 | exon | 3137244 | 3137672 | 3137244 | ID=Msa0933940-mRNA-1:exon:1061;Parent=Msa0933940-mRNA-1 |
| chr6_3 | exon | 3140842 | 3141011 | 3140842 | ID=Msa0933940-mRNA-1:exon:1062;Parent=Msa0933940-mRNA-1 |
| chr6_3 | exon | 3142124 | 3142321 | 3142124 | ID=Msa0933940-mRNA-1:exon:1063;Parent=Msa0933940-mRNA-1 |
| chr6_3 | exon | 3143180 | 3143333 | 3143180 | ID=Msa0933940-mRNA-1:exon:1064;Parent=Msa0933940-mRNA-1 |
| chr6_3 | exon | 3143602 | 3144103 | 3143602 | ID=Msa0933940-mRNA-1:exon:1065;Parent=Msa0933940-mRNA-1 |
| chr6_3 | five_prime_UTR | 3137244 | 3137413 | 3137244 | ID=Msa0933940-mRNA-1:five_prime_utr;Parent=Msa0933940-mRNA-1 |
| chr6_3 | CDS | 3137414 | 3137672 | 3137414 | ID=Msa0933940-mRNA-1:cds;Parent=Msa0933940-mRNA-1 |
| chr6_3 | CDS | 3140842 | 3141011 | 3140842 | ID=Msa0933940-mRNA-1:cds;Parent=Msa0933940-mRNA-1 |
| chr6_3 | CDS | 3142124 | 3142321 | 3142124 | ID=Msa0933940-mRNA-1:cds;Parent=Msa0933940-mRNA-1 |
| chr6_3 | CDS | 3143180 | 3143333 | 3143180 | ID=Msa0933940-mRNA-1:cds;Parent=Msa0933940-mRNA-1 |
| chr6_3 | CDS | 3143602 | 3143897 | 3143602 | ID=Msa0933940-mRNA-1:cds;Parent=Msa0933940-mRNA-1 |
| chr6_3 | three_prime_UTR | 3143898 | 3144103 | 3143898 | ID=Msa0933940-mRNA-1:three_prime_utr;Parent=Msa0933940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
