Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869980 | XP_024641758.1 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 1.15e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869980 | sp|P64956|Y2253_MYCBO | 38.583 | 127 | 77 | 1 | 16 | 141 | 1 | 127 | 2.33e-22 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869980 | A0A396HG70 | 73.723 | 137 | 36 | 0 | 18 | 154 | 9 | 145 | 1.66e-64 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0243100 | Msa0869980 | 0.804813 | 1.803631e-49 | -8.615850e-47 |
| Msa0869980 | Msa0903300 | 0.851515 | 8.438037e-61 | -8.615850e-47 |
| Msa0869980 | Msa0935710 | 0.859536 | 3.866187e-63 | -8.615850e-47 |
| Msa0869980 | Msa0972670 | 0.901588 | 2.301915e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869980 | MtrunA17_Chr6g0451421 | 73.723 | 137 | 36 | 0 | 18 | 154 | 9 | 145 | 3.19e-68 | 203 |
| Msa0869980 | MtrunA17_Chr6g0451411 | 65.000 | 140 | 49 | 0 | 16 | 155 | 175 | 314 | 3.00e-61 | 191 |
| Msa0869980 | MtrunA17_Chr2g0329701 | 57.971 | 138 | 58 | 0 | 17 | 154 | 234 | 371 | 3.01e-54 | 175 |
| Msa0869980 | MtrunA17_Chr7g0264421 | 57.971 | 138 | 58 | 0 | 17 | 154 | 204 | 341 | 9.52e-53 | 170 |
| Msa0869980 | MtrunA17_Chr2g0325301 | 56.618 | 136 | 59 | 0 | 17 | 152 | 10 | 145 | 1.04e-51 | 161 |
| Msa0869980 | MtrunA17_Chr6g0451441 | 55.414 | 157 | 62 | 1 | 9 | 157 | 312 | 468 | 3.50e-48 | 161 |
| Msa0869980 | MtrunA17_Chr6g0451451 | 65.517 | 87 | 30 | 0 | 71 | 157 | 1 | 87 | 5.29e-36 | 119 |
| Msa0869980 | MtrunA17_Chr1g0158081 | 37.190 | 121 | 74 | 1 | 20 | 140 | 1209 | 1327 | 3.87e-15 | 71.6 |
| Msa0869980 | MtrunA17_Chr3g0110591 | 34.532 | 139 | 88 | 2 | 4 | 141 | 8 | 144 | 1.39e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869980 | AT3G01410.2 | 55.882 | 136 | 60 | 0 | 17 | 152 | 154 | 289 | 1.19e-50 | 164 |
| Msa0869980 | AT3G01410.1 | 55.882 | 136 | 60 | 0 | 17 | 152 | 154 | 289 | 1.19e-50 | 164 |
| Msa0869980 | AT5G51080.3 | 51.471 | 136 | 66 | 0 | 17 | 152 | 122 | 257 | 6.60e-46 | 150 |
| Msa0869980 | AT5G51080.1 | 51.471 | 136 | 66 | 0 | 17 | 152 | 185 | 320 | 5.20e-45 | 150 |
| Msa0869980 | AT5G51080.2 | 51.471 | 136 | 66 | 0 | 17 | 152 | 185 | 320 | 5.20e-45 | 150 |
| Msa0869980 | AT1G24090.1 | 53.676 | 136 | 63 | 0 | 17 | 152 | 216 | 351 | 2.19e-44 | 149 |
Find 49 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACAGTTGAAAGGTTTA+TGG | 0.191806 | 6_1:+4246794 | Msa0869980:intron |
| GCTATACTGCGTACTGAAAA+TGG | 0.195325 | 6_1:+4246246 | Msa0869980:CDS |
| ACATCAACAATGCTTATTTA+AGG | 0.208439 | 6_1:+4246818 | Msa0869980:CDS |
| TCTTGTATCCTTGAGTTTGA+TGG | 0.246738 | 6_1:+4246186 | Msa0869980:CDS |
| ATGCCCACTATTAGCAGTTT+AGG | 0.253049 | 6_1:+4247775 | Msa0869980:three_prime_UTR |
| AAGCTGATGCTCAAGCAAAT+TGG | 0.259153 | 6_1:+4247196 | Msa0869980:CDS |
| GCAAATTGGGCCATCTTTCT+TGG | 0.273597 | 6_1:+4247210 | Msa0869980:CDS |
| AGTACTTCAGTTTAGCAAAT+TGG | 0.284439 | 6_1:+4247673 | Msa0869980:three_prime_UTR |
| TGCCCACTATTAGCAGTTTA+GGG | 0.295761 | 6_1:+4247776 | Msa0869980:three_prime_UTR |
| AGCTCCGGCACCAGCTGGTC+CGG | 0.304765 | 6_1:-4246226 | None:intergenic |
| AGCTGATGCTCAAGCAAATT+GGG | 0.360173 | 6_1:+4247197 | Msa0869980:CDS |
| GAACTTATGCAATGAGGCTT+TGG | 0.369368 | 6_1:+4246840 | Msa0869980:CDS |
| TAGGACTGAAACAAGTTGTA+AGG | 0.403477 | 6_1:+4246436 | Msa0869980:CDS |
| AAACACATTAGAGCTGGAAT+TGG | 0.422193 | 6_1:+4242664 | Msa0869980:five_prime_UTR |
| AGTCCCTAAACTGCTAATAG+TGG | 0.428944 | 6_1:-4247779 | None:intergenic |
| CTCCGAACTTGTTATCAATC+AGG | 0.438341 | 6_1:+4246491 | Msa0869980:CDS |
| AGCTGGTCCGGGATTCCCGC+TGG | 0.458523 | 6_1:-4246214 | None:intergenic |
| ATAGTGGGCATCTACACATT+AGG | 0.460561 | 6_1:-4247763 | None:intergenic |
| GCAATGAGGCTTTGGAGCTA+AGG | 0.469965 | 6_1:+4246848 | Msa0869980:CDS |
| CTATACTGCGTACTGAAAAT+GGG | 0.472624 | 6_1:+4246247 | Msa0869980:CDS |
| GGTGCAGCCAGCGGGAATCC+CGG | 0.474643 | 6_1:+4246207 | Msa0869980:CDS |
| GCGTACTGAAAATGGGAGTC+TGG | 0.474898 | 6_1:+4246254 | Msa0869980:CDS |
| AAGTTGTAAGGAAAGGATAT+AGG | 0.480422 | 6_1:+4246448 | Msa0869980:CDS |
| TTTGATAACCAAGTCCTTCG+CGG | 0.488713 | 6_1:-4246380 | None:intergenic |
| TTCAGTACGCAGTATAGCTC+CGG | 0.494280 | 6_1:-4246241 | None:intergenic |
| TGGTGGTTTCACATGTGAAC+TGG | 0.504020 | 6_1:+4247693 | Msa0869980:three_prime_UTR |
| GCTCCGGCACCAGCTGGTCC+GGG | 0.509262 | 6_1:-4246225 | None:intergenic |
| CAATGAGGCTTTGGAGCTAA+GGG | 0.513996 | 6_1:+4246849 | Msa0869980:CDS |
| GACCTGATTGATAACAAGTT+CGG | 0.519027 | 6_1:-4246493 | None:intergenic |
| AGTATAGCTCCGGCACCAGC+TGG | 0.523879 | 6_1:-4246231 | None:intergenic |
| AATTGGGCCATCTTTCTTGG+AGG | 0.525253 | 6_1:+4247213 | Msa0869980:CDS |
| ACTTCAGTTTAGCAAATTGG+TGG | 0.529105 | 6_1:+4247676 | Msa0869980:three_prime_UTR |
| AATCCCGGACCAGCTGGTGC+CGG | 0.539704 | 6_1:+4246222 | Msa0869980:CDS |
| AGTTTGATGGTGCAGCCAGC+GGG | 0.541634 | 6_1:+4246199 | Msa0869980:CDS |
| TCTAACAAACACATTAGAGC+TGG | 0.541796 | 6_1:+4242658 | Msa0869980:five_prime_UTR |
| TAGAGAGAAATCACGACTAG+TGG | 0.544154 | 6_1:+4242700 | Msa0869980:five_prime_UTR |
| TATAGGAACATCACTGTCTA+CGG | 0.555751 | 6_1:+4246465 | Msa0869980:CDS |
| GGTCTAACCTCCAAGAAAGA+TGG | 0.555833 | 6_1:-4247220 | None:intergenic |
| TTTAAGGAACTTATGCAATG+AGG | 0.557886 | 6_1:+4246834 | Msa0869980:CDS |
| GTCCCTAAACTGCTAATAGT+GGG | 0.566813 | 6_1:-4247778 | None:intergenic |
| CTGAAACAAGTTGTAAGGAA+AGG | 0.573489 | 6_1:+4246441 | Msa0869980:CDS |
| CATGTGAACTGGCATGTCAA+AGG | 0.585422 | 6_1:+4247704 | Msa0869980:three_prime_UTR |
| GACTAGTGGAAACGCGAGAG+AGG | 0.591060 | 6_1:+4242714 | Msa0869980:five_prime_UTR |
| TAGCTCTATCGATTCCGCGA+AGG | 0.598150 | 6_1:+4246366 | Msa0869980:intron |
| GAGTTTGATGGTGCAGCCAG+CGG | 0.600495 | 6_1:+4246198 | Msa0869980:CDS |
| TGGCTGCACCATCAAACTCA+AGG | 0.610487 | 6_1:-4246194 | None:intergenic |
| GTGGTATTGCAATCGTAGAG+AGG | 0.645749 | 6_1:+4243848 | Msa0869980:CDS |
| CTTGTCCAGATGCATCGTTG+TGG | 0.664152 | 6_1:+4243829 | Msa0869980:intron |
| ATGAATTAACGATCATCCGA+CGG | 0.680586 | 6_1:+4247600 | Msa0869980:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAATTATTCAATG+CGG | + | chr6_1:4243203-4243222 | Msa0869980:intron | 10.0% |
| !!! | ACTTATTAACATTTTTTTAA+TGG | - | chr6_1:4243670-4243689 | None:intergenic | 10.0% |
| !! | TAAAAATGTAATTGATTATA+AGG | + | chr6_1:4245514-4245533 | Msa0869980:intron | 10.0% |
| !! | AATTATGATATAAAAGTTTA+GGG | - | chr6_1:4245703-4245722 | None:intergenic | 10.0% |
| !! | AAATTATGATATAAAAGTTT+AGG | - | chr6_1:4245704-4245723 | None:intergenic | 10.0% |
| !!! | AAAAAATAATTTTCTGCATT+CGG | - | chr6_1:4242954-4242973 | None:intergenic | 15.0% |
| !!! | AATAAAAAACAGAAGTTTTT+TGG | - | chr6_1:4243186-4243205 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGCATTTTAGT+TGG | + | chr6_1:4243739-4243758 | Msa0869980:intron | 15.0% |
| !!! | TAATTTATTGCATTTTAGTT+GGG | + | chr6_1:4243740-4243759 | Msa0869980:intron | 15.0% |
| !! | TATAAATTGTTGAAAAATCT+TGG | + | chr6_1:4243916-4243935 | Msa0869980:intron | 15.0% |
| !!! | GTTGTGATAAAAATTAATTT+TGG | + | chr6_1:4244004-4244023 | Msa0869980:intron | 15.0% |
| !!! | ACAAATTATTTTTTTGCTTA+TGG | + | chr6_1:4244560-4244579 | Msa0869980:intron | 15.0% |
| !! | GAATTGAAATAAAAAAATGA+TGG | - | chr6_1:4245139-4245158 | None:intergenic | 15.0% |
| !! | ATTGATATCAATAATAATGA+TGG | - | chr6_1:4245164-4245183 | None:intergenic | 15.0% |
| !! | AAAGAAAACAAAAAAAAAAC+TGG | - | chr6_1:4245383-4245402 | None:intergenic | 15.0% |
| !! | TAATATAAAATAGTGTTGTA+TGG | + | chr6_1:4245554-4245573 | Msa0869980:intron | 15.0% |
| !! | AATATAAAATAGTGTTGTAT+GGG | + | chr6_1:4245555-4245574 | Msa0869980:intron | 15.0% |
| !! | ATTATGATATAAAAGTTTAG+GGG | - | chr6_1:4245702-4245721 | None:intergenic | 15.0% |
| !!! | TAAGAAAAAATTTCTACTTT+TGG | + | chr6_1:4245836-4245855 | Msa0869980:intron | 15.0% |
| !! | TACCTTATAGATAAATTAAA+GGG | - | chr6_1:4245900-4245919 | None:intergenic | 15.0% |
| !! | TTACCTTATAGATAAATTAA+AGG | - | chr6_1:4245901-4245920 | None:intergenic | 15.0% |
| !! | CTTCTTCTTTATATATTCTT+CGG | + | chr6_1:4242748-4242767 | Msa0869980:intron | 20.0% |
| !!! | GACCTTATTAGAATAATTTT+TGG | + | chr6_1:4244167-4244186 | Msa0869980:intron | 20.0% |
| !! | CTCCAAAAATTATTCTAATA+AGG | - | chr6_1:4244172-4244191 | None:intergenic | 20.0% |
| !!! | CTTATTAGAATAATTTTTGG+AGG | + | chr6_1:4244170-4244189 | Msa0869980:intron | 20.0% |
| !! | TTTATAGTGCAATATATAGT+TGG | + | chr6_1:4244688-4244707 | Msa0869980:intron | 20.0% |
| !! | ATCAAACAAAGAATTAAATC+AGG | - | chr6_1:4244897-4244916 | None:intergenic | 20.0% |
| !! | AATAGTTTATCATATCCTAT+TGG | - | chr6_1:4244923-4244942 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTATCAATCTGAT+AGG | - | chr6_1:4245015-4245034 | None:intergenic | 20.0% |
| !!! | GATATCAATTTACTTTTGTA+TGG | + | chr6_1:4245175-4245194 | Msa0869980:intron | 20.0% |
| !! | ATGGAATCTATAAAAAGAAA+AGG | - | chr6_1:4245234-4245253 | None:intergenic | 20.0% |
| !! | ATCTATAAAAAGAAGATAGA+TGG | - | chr6_1:4245253-4245272 | None:intergenic | 20.0% |
| !! | TTGTTCATAAAAAAGATACA+TGG | + | chr6_1:4246559-4246578 | Msa0869980:intron | 20.0% |
| !! | TTCTTTGTTAAAAACAACTA+TGG | + | chr6_1:4246612-4246631 | Msa0869980:intron | 20.0% |
| !! | ATGAAACTAAATGAATTCAA+AGG | - | chr6_1:4246669-4246688 | None:intergenic | 20.0% |
| !! | TTAACAATATCTAACCAATT+AGG | - | chr6_1:4246699-4246718 | None:intergenic | 20.0% |
| !! | AAAACAATTAGATTGGAATT+TGG | + | chr6_1:4246983-4247002 | Msa0869980:intron | 20.0% |
| !! | AAACAATTAGATTGGAATTT+GGG | + | chr6_1:4246984-4247003 | Msa0869980:intron | 20.0% |
| !!! | TTTTACTGTCAAAATACAAA+TGG | + | chr6_1:4247058-4247077 | Msa0869980:intron | 20.0% |
| !!! | TGTTCTTTTGAAAATGTTTA+AGG | + | chr6_1:4247161-4247180 | Msa0869980:intron | 20.0% |
| !!! | CAAACTAAAAGATTCATTTT+TGG | - | chr6_1:4247366-4247385 | None:intergenic | 20.0% |
| !! | GTTCAAAAGAATTATCTAAA+TGG | - | chr6_1:4247503-4247522 | None:intergenic | 20.0% |
| !!! | ATCTTAAACTTTTTTGTAGA+CGG | + | chr6_1:4247558-4247577 | Msa0869980:intron | 20.0% |
| ! | AAAACCAGTTAAATTAGGTT+TGG | - | chr6_1:4242817-4242836 | None:intergenic | 25.0% |
| ! | CAGAAAAAACCAGTTAAATT+AGG | - | chr6_1:4242822-4242841 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTCTGTTTTGATT+GGG | + | chr6_1:4242830-4242849 | Msa0869980:intron | 25.0% |
| ! | AAAGAAGCAACTAAATCAAT+CGG | + | chr6_1:4243055-4243074 | Msa0869980:intron | 25.0% |
| !!! | TGTTTTTTGAAGAAGCTAAA+CGG | + | chr6_1:4243087-4243106 | Msa0869980:intron | 25.0% |
| ! | GTTATGTAAAAAATAGCAGT+AGG | - | chr6_1:4243412-4243431 | None:intergenic | 25.0% |
| ! | TTTATCTTGCTAAGTAGAAT+CGG | - | chr6_1:4243460-4243479 | None:intergenic | 25.0% |
| ! | AATGCAATGCTATTAACATA+TGG | + | chr6_1:4243512-4243531 | Msa0869980:intron | 25.0% |
| !! | AGTTTAAAACTAGTTGAAAG+AGG | + | chr6_1:4243610-4243629 | Msa0869980:intron | 25.0% |
| ! | ATAGGTTGTTACATTCTTTA+CGG | + | chr6_1:4243778-4243797 | Msa0869980:intron | 25.0% |
| !! | TATAAAATAAACCGACTTAC+TGG | - | chr6_1:4243883-4243902 | None:intergenic | 25.0% |
| ! | AATTGATAGAATAGAGTTGA+AGG | + | chr6_1:4244046-4244065 | Msa0869980:intron | 25.0% |
| ! | TACGATTTAGAAAATCACAA+TGG | + | chr6_1:4244356-4244375 | Msa0869980:intron | 25.0% |
| ! | AAATTGTATAAGCTTATGTC+TGG | - | chr6_1:4244414-4244433 | None:intergenic | 25.0% |
| ! | AGAAAACTTATGTATAGTGT+AGG | + | chr6_1:4244756-4244775 | Msa0869980:intron | 25.0% |
| ! | CTTTATAGAGGATTTCAATT+TGG | - | chr6_1:4244796-4244815 | None:intergenic | 25.0% |
| ! | TGACTGTTAAAACTTTATAG+AGG | - | chr6_1:4244808-4244827 | None:intergenic | 25.0% |
| ! | GATAGGATAGGATAAATTAA+AGG | - | chr6_1:4244946-4244965 | None:intergenic | 25.0% |
| ! | TGAATTGAAATCGAAAATGA+TGG | - | chr6_1:4245083-4245102 | None:intergenic | 25.0% |
| ! | GAAGAAGATAATAATAGTGA+TGG | - | chr6_1:4245107-4245126 | None:intergenic | 25.0% |
| ! | ATAAAAATAAAAGGACGAAG+AGG | - | chr6_1:4245303-4245322 | None:intergenic | 25.0% |
| ! | GTGGAATGCATAAAAATAAA+AGG | - | chr6_1:4245312-4245331 | None:intergenic | 25.0% |
| ! | TGAAATCACAAAAAAAGAAG+TGG | - | chr6_1:4245331-4245350 | None:intergenic | 25.0% |
| ! | AGATAGGATATGATATAAAC+AGG | - | chr6_1:4245626-4245645 | None:intergenic | 25.0% |
| !! | GACCCTTTAATTTATCTATA+AGG | + | chr6_1:4245895-4245914 | Msa0869980:intron | 25.0% |
| ! | CAAAAACTGAATAGTTTCTT+TGG | + | chr6_1:4245971-4245990 | Msa0869980:intron | 25.0% |
| ! | TGAAATCTTCTGTATAGTTT+AGG | + | chr6_1:4246038-4246057 | Msa0869980:intron | 25.0% |
| ! | AATATCTAACCAATTAGGAA+AGG | - | chr6_1:4246694-4246713 | None:intergenic | 25.0% |
| ! | TGCAAAACAATAACATATGT+TGG | - | chr6_1:4246778-4246797 | None:intergenic | 25.0% |
| ! | ACATCAACAATGCTTATTTA+AGG | + | chr6_1:4246818-4246837 | Msa0869980:CDS | 25.0% |
| ! | AATTGCTAAATATATACCCT+AGG | - | chr6_1:4246907-4246926 | None:intergenic | 25.0% |
| ! | GAAGTTGAAAACAATTAGAT+TGG | + | chr6_1:4246976-4246995 | Msa0869980:intron | 25.0% |
| !! | CATTTTCAAAAGAACAAACA+CGG | - | chr6_1:4247157-4247176 | None:intergenic | 25.0% |
| !! | TTGAACATTTGAAACCTATA+GGG | - | chr6_1:4247263-4247282 | None:intergenic | 25.0% |
| !! | ATTGAACATTTGAAACCTAT+AGG | - | chr6_1:4247264-4247283 | None:intergenic | 25.0% |
| !!! | AGATTCATTTTTGGTTTCAA+AGG | - | chr6_1:4247357-4247376 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTAAAGCAACTT+TGG | - | chr6_1:4247434-4247453 | None:intergenic | 25.0% |
| CTTTATATATTCTTCGGCTT+AGG | + | chr6_1:4242754-4242773 | Msa0869980:intron | 30.0% | |
| ! | AGTTAAATTAGGTTTGGTTC+GGG | - | chr6_1:4242811-4242830 | None:intergenic | 30.0% |
| ! | CAGTTAAATTAGGTTTGGTT+CGG | - | chr6_1:4242812-4242831 | None:intergenic | 30.0% |
| !!! | CTGGTTTTTTCTGTTTTGAT+TGG | + | chr6_1:4242829-4242848 | Msa0869980:intron | 30.0% |
| !!! | TTTTCTGTTTTGATTGGGTT+TGG | + | chr6_1:4242835-4242854 | Msa0869980:intron | 30.0% |
| ! | AATAATTTTCTGCATTCGGA+CGG | - | chr6_1:4242950-4242969 | None:intergenic | 30.0% |
| ATGCATTACAACATTTCTCT+AGG | + | chr6_1:4243155-4243174 | Msa0869980:intron | 30.0% | |
| TGCATTACAACATTTCTCTA+GGG | + | chr6_1:4243156-4243175 | Msa0869980:intron | 30.0% | |
| ! | CTCAACTAATTTGAGTTAGT+TGG | + | chr6_1:4243580-4243599 | Msa0869980:intron | 30.0% |
| ! | AACTAATTTGAGTTAGTTGG+AGG | + | chr6_1:4243583-4243602 | Msa0869980:intron | 30.0% |
| GGGATGTTAATTCTATACAT+AGG | + | chr6_1:4243760-4243779 | Msa0869980:intron | 30.0% | |
| GGAATTATAATCCAGTAAGT+CGG | + | chr6_1:4243869-4243888 | Msa0869980:intron | 30.0% | |
| GAATAGAGTTGAAGGTAAAA+TGG | + | chr6_1:4244054-4244073 | Msa0869980:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr6_1:4244273-4244292 | Msa0869980:intron | 30.0% | |
| TTGTAGTTTCTGCAAAATCA+TGG | - | chr6_1:4244332-4244351 | None:intergenic | 30.0% | |
| AGTATGTATAGCCATATGTT+AGG | + | chr6_1:4244467-4244486 | Msa0869980:intron | 30.0% | |
| AAAGCTTCATATCAATTGCT+TGG | + | chr6_1:4244719-4244738 | Msa0869980:intron | 30.0% | |
| AACAGTCATAGTTAACTCTA+AGG | + | chr6_1:4244820-4244839 | Msa0869980:intron | 30.0% | |
| ACAGTCATAGTTAACTCTAA+GGG | + | chr6_1:4244821-4244840 | Msa0869980:intron | 30.0% | |
| ACAAAATACAAAGGAGTGAT+AGG | - | chr6_1:4244963-4244982 | None:intergenic | 30.0% | |
| ACTCAGGATACAAAATACAA+AGG | - | chr6_1:4244972-4244991 | None:intergenic | 30.0% | |
| AAGAAGATGAGGGTAAATTT+GGG | - | chr6_1:4245038-4245057 | None:intergenic | 30.0% | |
| ! | AAAAAAATGATGGAATGAGC+AGG | - | chr6_1:4245129-4245148 | None:intergenic | 30.0% |
| ATATGAAACAGGATAGAGAT+AGG | - | chr6_1:4245642-4245661 | None:intergenic | 30.0% | |
| TAGTAATCAAGCAATTCATG+TGG | - | chr6_1:4246011-4246030 | None:intergenic | 30.0% | |
| ! | CTTTACAGAGGATTTTCATT+TGG | - | chr6_1:4246078-4246097 | None:intergenic | 30.0% |
| TGATTGTCAAAACTTTACAG+AGG | - | chr6_1:4246090-4246109 | None:intergenic | 30.0% | |
| ACTTTGTGCAACAATTCATT+TGG | + | chr6_1:4246282-4246301 | Msa0869980:intron | 30.0% | |
| AAGTTGTAAGGAAAGGATAT+AGG | + | chr6_1:4246448-4246467 | Msa0869980:CDS | 30.0% | |
| GTTTCATATCCTTTCCTAAT+TGG | + | chr6_1:4246682-4246701 | Msa0869980:intron | 30.0% | |
| !! | ATTGTTTTGCAACAGTTGAA+AGG | + | chr6_1:4246787-4246806 | Msa0869980:intron | 30.0% |
| TTTAAGGAACTTATGCAATG+AGG | + | chr6_1:4246834-4246853 | Msa0869980:CDS | 30.0% | |
| AAACCAAACAAAAAGCAAAG+AGG | - | chr6_1:4247459-4247478 | None:intergenic | 30.0% | |
| AGTACTTCAGTTTAGCAAAT+TGG | + | chr6_1:4247673-4247692 | Msa0869980:three_prime_UTR | 30.0% | |
| TCTAACAAACACATTAGAGC+TGG | + | chr6_1:4242658-4242677 | Msa0869980:five_prime_UTR | 35.0% | |
| AAACACATTAGAGCTGGAAT+TGG | + | chr6_1:4242664-4242683 | Msa0869980:five_prime_UTR | 35.0% | |
| CGAACCAAACCTAATTTAAC+TGG | + | chr6_1:4242810-4242829 | Msa0869980:intron | 35.0% | |
| ATTGGGTTTGGATATGAGTT+TGG | + | chr6_1:4242847-4242866 | Msa0869980:intron | 35.0% | |
| ! | TTTTCCGCGATTTCAAAACA+CGG | + | chr6_1:4242871-4242890 | Msa0869980:intron | 35.0% |
| ! | ATAATTTTCTGCATTCGGAC+GGG | - | chr6_1:4242949-4242968 | None:intergenic | 35.0% |
| GCATTACAACATTTCTCTAG+GGG | + | chr6_1:4243157-4243176 | Msa0869980:intron | 35.0% | |
| AAATTATTCAATGCGGAGAC+AGG | + | chr6_1:4243210-4243229 | Msa0869980:intron | 35.0% | |
| AATTATTCAATGCGGAGACA+GGG | + | chr6_1:4243211-4243230 | Msa0869980:intron | 35.0% | |
| ! | ATGTGACATTTTGAGCATGA+AGG | - | chr6_1:4243961-4243980 | None:intergenic | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | + | chr6_1:4244278-4244297 | Msa0869980:intron | 35.0% | |
| TAGTTTCTGCAAAATCATGG+TGG | - | chr6_1:4244329-4244348 | None:intergenic | 35.0% | |
| TATAGCCATATGTTAGGTTC+TGG | + | chr6_1:4244473-4244492 | Msa0869980:intron | 35.0% | |
| ATAGAGGATTTCAATTTGGC+AGG | - | chr6_1:4244792-4244811 | None:intergenic | 35.0% | |
| ! | TCTTTGTTTGATGCACCAAT+AGG | + | chr6_1:4244905-4244924 | Msa0869980:intron | 35.0% |
| ATACAAAGGAGTGATAGGAT+AGG | - | chr6_1:4244958-4244977 | None:intergenic | 35.0% | |
| ! | TTTTAACCTAGCTCAAACTC+AGG | - | chr6_1:4244988-4245007 | None:intergenic | 35.0% |
| GAAGAAGATGAGGGTAAATT+TGG | - | chr6_1:4245039-4245058 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGATGA+GGG | - | chr6_1:4245048-4245067 | None:intergenic | 35.0% | |
| AAAGGACGAAGAAGAATTGA+AGG | - | chr6_1:4245216-4245235 | None:intergenic | 35.0% | |
| TGGAAATTTGTGTAACGAAG+AGG | - | chr6_1:4245363-4245382 | None:intergenic | 35.0% | |
| GACAGGATAGAATATGAAAC+AGG | - | chr6_1:4245653-4245672 | None:intergenic | 35.0% | |
| !! | CTTGTTAACTTGTTCCCTTA+GGG | - | chr6_1:4245876-4245895 | None:intergenic | 35.0% |
| !! | TCTTGTTAACTTGTTCCCTT+AGG | - | chr6_1:4245877-4245896 | None:intergenic | 35.0% |
| ! | ACAGAGGATTTTCATTTGGT+AGG | - | chr6_1:4246074-4246093 | None:intergenic | 35.0% |
| TCTTGTATCCTTGAGTTTGA+TGG | + | chr6_1:4246186-4246205 | Msa0869980:CDS | 35.0% | |
| CTATACTGCGTACTGAAAAT+GGG | + | chr6_1:4246247-4246266 | Msa0869980:CDS | 35.0% | |
| TAGGACTGAAACAAGTTGTA+AGG | + | chr6_1:4246436-4246455 | Msa0869980:CDS | 35.0% | |
| CTGAAACAAGTTGTAAGGAA+AGG | + | chr6_1:4246441-4246460 | Msa0869980:CDS | 35.0% | |
| TATAGGAACATCACTGTCTA+CGG | + | chr6_1:4246465-4246484 | Msa0869980:CDS | 35.0% | |
| ! | GACCTGATTGATAACAAGTT+CGG | - | chr6_1:4246496-4246515 | None:intergenic | 35.0% |
| ATGAATTCAAAGGAGCCTTT+CGG | - | chr6_1:4246659-4246678 | None:intergenic | 35.0% | |
| TGCAACAGTTGAAAGGTTTA+TGG | + | chr6_1:4246794-4246813 | Msa0869980:intron | 35.0% | |
| ! | TCAGCATCTTTTACATTCCT+AGG | + | chr6_1:4246887-4246906 | Msa0869980:CDS | 35.0% |
| ! | CAGCATCTTTTACATTCCTA+GGG | + | chr6_1:4246888-4246907 | Msa0869980:CDS | 35.0% |
| ! | ACGGTATTTGTTAACTGTTG+AGG | - | chr6_1:4247138-4247157 | None:intergenic | 35.0% |
| CATTGCAGTTCTTGTTCATT+AGG | - | chr6_1:4247297-4247316 | None:intergenic | 35.0% | |
| AAATGGTTTCAAAGCAGCTT+TGG | - | chr6_1:4247328-4247347 | None:intergenic | 35.0% | |
| GGTTTCAAAGGATGCTTAAA+TGG | - | chr6_1:4247345-4247364 | None:intergenic | 35.0% | |
| ! | GTGCAGAGTTCTGATATATT+AGG | - | chr6_1:4247401-4247420 | None:intergenic | 35.0% |
| ! | CAAAAAGCAAAGAGGCTTTT+TGG | - | chr6_1:4247451-4247470 | None:intergenic | 35.0% |
| !!! | AAGCCTCTTTGCTTTTTGTT+TGG | + | chr6_1:4247453-4247472 | Msa0869980:intron | 35.0% |
| ATGAATTAACGATCATCCGA+CGG | + | chr6_1:4247600-4247619 | Msa0869980:exon | 35.0% | |
| ATGCCACTGTCAAAAACTAT+TGG | + | chr6_1:4247624-4247643 | Msa0869980:three_prime_UTR | 35.0% | |
| ! | TTGCCAATAGTTTTTGACAG+TGG | - | chr6_1:4247630-4247649 | None:intergenic | 35.0% |
| ACTTCAGTTTAGCAAATTGG+TGG | + | chr6_1:4247676-4247695 | Msa0869980:three_prime_UTR | 35.0% | |
| TAGAGAGAAATCACGACTAG+TGG | + | chr6_1:4242700-4242719 | Msa0869980:five_prime_UTR | 40.0% | |
| !! | TAAATTAGGTTTGGTTCGGG+CGG | - | chr6_1:4242808-4242827 | None:intergenic | 40.0% |
| TTTCCGCGATTTCAAAACAC+GGG | + | chr6_1:4242872-4242891 | Msa0869980:intron | 40.0% | |
| !!! | ATACCCGTGTTTTGAAATCG+CGG | - | chr6_1:4242878-4242897 | None:intergenic | 40.0% |
| CGATTTCAAAACACGGGTAT+GGG | + | chr6_1:4242878-4242897 | Msa0869980:intron | 40.0% | |
| GTTCAATTTATCATCCCCGT+TGG | + | chr6_1:4243275-4243294 | Msa0869980:intron | 40.0% | |
| ! | TTTATCATCCCCGTTGGTTA+TGG | + | chr6_1:4243281-4243300 | Msa0869980:intron | 40.0% |
| ! | TTATCATCCCCGTTGGTTAT+GGG | + | chr6_1:4243282-4243301 | Msa0869980:intron | 40.0% |
| ACGGGTAAGTATACGAGAAT+CGG | + | chr6_1:4243312-4243331 | Msa0869980:intron | 40.0% | |
| AAGTATACGAGAATCGGGTA+TGG | + | chr6_1:4243318-4243337 | Msa0869980:intron | 40.0% | |
| AGTATACGAGAATCGGGTAT+GGG | + | chr6_1:4243319-4243338 | Msa0869980:intron | 40.0% | |
| ATAGCAGTAGGCATGACAAT+GGG | - | chr6_1:4243400-4243419 | None:intergenic | 40.0% | |
| AATAGCAGTAGGCATGACAA+TGG | - | chr6_1:4243401-4243420 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr6_1:4244279-4244298 | Msa0869980:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr6_1:4244280-4244299 | Msa0869980:intron | 40.0% | |
| CTAGTCCAGAACCTAACATA+TGG | - | chr6_1:4244481-4244500 | None:intergenic | 40.0% | |
| !! | CATATGTTAGGTTCTGGACT+AGG | + | chr6_1:4244479-4244498 | Msa0869980:intron | 40.0% |
| TTGTATCCTGAGTTTGAGCT+AGG | + | chr6_1:4244979-4244998 | Msa0869980:intron | 40.0% | |
| GGAAGAAGAAGAAGAAGATG+AGG | - | chr6_1:4245049-4245068 | None:intergenic | 40.0% | |
| AAAATGATGGCATGAGCAAC+AGG | - | chr6_1:4245070-4245089 | None:intergenic | 40.0% | |
| AAAGTTTAGGGGTCGTTTGA+TGG | - | chr6_1:4245691-4245710 | None:intergenic | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr6_1:4245734-4245753 | Msa0869980:intron | 40.0% |
| !! | CTCTTTAACTTGTGCCTTGA+GGG | - | chr6_1:4245751-4245770 | None:intergenic | 40.0% |
| !! | ACTCTTTAACTTGTGCCTTG+AGG | - | chr6_1:4245752-4245771 | None:intergenic | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr6_1:4245859-4245878 | Msa0869980:intron | 40.0% | |
| GCTATACTGCGTACTGAAAA+TGG | + | chr6_1:4246246-4246265 | Msa0869980:CDS | 40.0% | |
| ! | TTTGATAACCAAGTCCTTCG+CGG | - | chr6_1:4246383-4246402 | None:intergenic | 40.0% |
| !!! | GAGTATCGCGCATTGATTTT+AGG | + | chr6_1:4246417-4246436 | Msa0869980:CDS | 40.0% |
| !! | CTCCGAACTTGTTATCAATC+AGG | + | chr6_1:4246491-4246510 | Msa0869980:CDS | 40.0% |
| !!! | CCTTTCGGTTTTTTGGGAAA+GGG | - | chr6_1:4246644-4246663 | None:intergenic | 40.0% |
| !!! | AAGGAGCCTTTCGGTTTTTT+GGG | - | chr6_1:4246650-4246669 | None:intergenic | 40.0% |
| !!! | AAAGGAGCCTTTCGGTTTTT+TGG | - | chr6_1:4246651-4246670 | None:intergenic | 40.0% |
| GAACTTATGCAATGAGGCTT+TGG | + | chr6_1:4246840-4246859 | Msa0869980:CDS | 40.0% | |
| AAGCTGATGCTCAAGCAAAT+TGG | + | chr6_1:4247196-4247215 | Msa0869980:CDS | 40.0% | |
| AGCTGATGCTCAAGCAAATT+GGG | + | chr6_1:4247197-4247216 | Msa0869980:CDS | 40.0% | |
| AGGGACTACGAAAAGTCTTA+AGG | - | chr6_1:4247244-4247263 | None:intergenic | 40.0% | |
| ! | AGACTTTTCGTAGTCCCTAT+AGG | + | chr6_1:4247246-4247265 | Msa0869980:intron | 40.0% |
| !! | ATAGTGGGCATCTACACATT+AGG | - | chr6_1:4247766-4247785 | None:intergenic | 40.0% |
| ATGCCCACTATTAGCAGTTT+AGG | + | chr6_1:4247775-4247794 | Msa0869980:three_prime_UTR | 40.0% | |
| TGCCCACTATTAGCAGTTTA+GGG | + | chr6_1:4247776-4247795 | Msa0869980:three_prime_UTR | 40.0% | |
| GTCCCTAAACTGCTAATAGT+GGG | - | chr6_1:4247781-4247800 | None:intergenic | 40.0% | |
| AGTCCCTAAACTGCTAATAG+TGG | - | chr6_1:4247782-4247801 | None:intergenic | 40.0% | |
| GCGATTTCAAAACACGGGTA+TGG | + | chr6_1:4242877-4242896 | Msa0869980:intron | 45.0% | |
| TTCAAAACACGGGTATGGGA+CGG | + | chr6_1:4242882-4242901 | Msa0869980:intron | 45.0% | |
| TTACCCTACCCATAACCAAC+GGG | - | chr6_1:4243293-4243312 | None:intergenic | 45.0% | |
| GTTACCCTACCCATAACCAA+CGG | - | chr6_1:4243294-4243313 | None:intergenic | 45.0% | |
| GTTGGTTATGGGTAGGGTAA+CGG | + | chr6_1:4243293-4243312 | Msa0869980:intron | 45.0% | |
| TTGGTTATGGGTAGGGTAAC+GGG | + | chr6_1:4243294-4243313 | Msa0869980:intron | 45.0% | |
| CGGGTAAGTATACGAGAATC+GGG | + | chr6_1:4243313-4243332 | Msa0869980:intron | 45.0% | |
| GTATACGAGAATCGGGTATG+GGG | + | chr6_1:4243320-4243339 | Msa0869980:intron | 45.0% | |
| TAGCAGTAGGCATGACAATG+GGG | - | chr6_1:4243399-4243418 | None:intergenic | 45.0% | |
| CAATACCACAACGATGCATC+TGG | - | chr6_1:4243837-4243856 | None:intergenic | 45.0% | |
| GTGGTATTGCAATCGTAGAG+AGG | + | chr6_1:4243848-4243867 | Msa0869980:CDS | 45.0% | |
| CATCGTGAGCTTAACTCAGT+TGG | + | chr6_1:4244247-4244266 | Msa0869980:intron | 45.0% | |
| GTGATTCTGAGTTTGAACCC+CGG | - | chr6_1:4244300-4244319 | None:intergenic | 45.0% | |
| !! | TGTTAGGTTCTGGACTAGGT+AGG | + | chr6_1:4244483-4244502 | Msa0869980:intron | 45.0% |
| ! | AACTCTAAGGGTGCGTTTGA+TGG | + | chr6_1:4244833-4244852 | Msa0869980:intron | 45.0% |
| TCAGGATAGAGAGTCAGGAT+AGG | + | chr6_1:4244856-4244875 | Msa0869980:intron | 45.0% | |
| GGTCAGGATAGGATAAAGAC+AGG | - | chr6_1:4245670-4245689 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | + | chr6_1:4245858-4245877 | Msa0869980:intron | 45.0% | |
| CAAGCAATTCATGTGGAGCT+TGG | - | chr6_1:4246004-4246023 | None:intergenic | 45.0% | |
| TTCAGTACGCAGTATAGCTC+CGG | - | chr6_1:4246244-4246263 | None:intergenic | 45.0% | |
| CCCTTTCCCAAAAAACCGAA+AGG | + | chr6_1:4246641-4246660 | Msa0869980:intron | 45.0% | |
| !!! | GCCTTTCGGTTTTTTGGGAA+AGG | - | chr6_1:4246645-4246664 | None:intergenic | 45.0% |
| !! | CAATGAGGCTTTGGAGCTAA+GGG | + | chr6_1:4246849-4246868 | Msa0869980:CDS | 45.0% |
| GCAGTGCTCAATTGAGAAAG+AGG | - | chr6_1:4246951-4246970 | None:intergenic | 45.0% | |
| GCAAATTGGGCCATCTTTCT+TGG | + | chr6_1:4247210-4247229 | Msa0869980:CDS | 45.0% | |
| AATTGGGCCATCTTTCTTGG+AGG | + | chr6_1:4247213-4247232 | Msa0869980:CDS | 45.0% | |
| GGTCTAACCTCCAAGAAAGA+TGG | - | chr6_1:4247223-4247242 | None:intergenic | 45.0% | |
| TGGTGGTTTCACATGTGAAC+TGG | + | chr6_1:4247693-4247712 | Msa0869980:three_prime_UTR | 45.0% | |
| CATGTGAACTGGCATGTCAA+AGG | + | chr6_1:4247704-4247723 | Msa0869980:three_prime_UTR | 45.0% | |
| !!! | TTTATATCATAATTTAATTT+AGG | + | chr6_1:4245709-4245728 | Msa0869980:intron | 5.0% |
| !!! | TTATATCATAATTTAATTTA+GGG | + | chr6_1:4245710-4245729 | Msa0869980:intron | 5.0% |
| !! | TTGGTTCGGGCGGTAATCAA+GGG | - | chr6_1:4242798-4242817 | None:intergenic | 50.0% |
| !! | TTTGGTTCGGGCGGTAATCA+AGG | - | chr6_1:4242799-4242818 | None:intergenic | 50.0% |
| TCAAAACACGGGTATGGGAC+GGG | + | chr6_1:4242883-4242902 | Msa0869980:intron | 50.0% | |
| GTTTGGGTATGAGTTCAGGG+TGG | - | chr6_1:4242927-4242946 | None:intergenic | 50.0% | |
| CGGGTTTGGGTATGAGTTCA+GGG | - | chr6_1:4242930-4242949 | None:intergenic | 50.0% | |
| ACGGGTTTGGGTATGAGTTC+AGG | - | chr6_1:4242931-4242950 | None:intergenic | 50.0% | |
| ! | TTCTGCATTCGGACGGGTTT+GGG | - | chr6_1:4242943-4242962 | None:intergenic | 50.0% |
| ! | TTTCTGCATTCGGACGGGTT+TGG | - | chr6_1:4242944-4242963 | None:intergenic | 50.0% |
| ATTCAATGCGGAGACAGGGA+TGG | + | chr6_1:4243215-4243234 | Msa0869980:intron | 50.0% | |
| ! | ATCCCCGTTGGTTATGGGTA+GGG | + | chr6_1:4243287-4243306 | Msa0869980:intron | 50.0% |
| TACCCTACCCATAACCAACG+GGG | - | chr6_1:4243292-4243311 | None:intergenic | 50.0% | |
| TATGGGGACGGTACGAGAAT+CGG | + | chr6_1:4243336-4243355 | Msa0869980:intron | 50.0% | |
| ACGGTACGAGAATCGGGTAT+GGG | + | chr6_1:4243343-4243362 | Msa0869980:intron | 50.0% | |
| CTTGTCCAGATGCATCGTTG+TGG | + | chr6_1:4243829-4243848 | Msa0869980:intron | 50.0% | |
| ! | TAAGGGTGCGTTTGATGGTC+AGG | + | chr6_1:4244838-4244857 | Msa0869980:intron | 50.0% |
| GATGGTCAGGATAGAGAGTC+AGG | + | chr6_1:4244851-4244870 | Msa0869980:intron | 50.0% | |
| ! | GGTCGTTTGATGGTCAGGAT+AGG | - | chr6_1:4245681-4245700 | None:intergenic | 50.0% |
| ! | TTAGGGGTCGTTTGATGGTC+AGG | - | chr6_1:4245686-4245705 | None:intergenic | 50.0% |
| TGGCTGCACCATCAAACTCA+AGG | - | chr6_1:4246197-4246216 | None:intergenic | 50.0% | |
| GCGTACTGAAAATGGGAGTC+TGG | + | chr6_1:4246254-4246273 | Msa0869980:CDS | 50.0% | |
| !! | TAGCTCTATCGATTCCGCGA+AGG | + | chr6_1:4246366-4246385 | Msa0869980:intron | 50.0% |
| !! | TATCGATTCCGCGAAGGACT+TGG | + | chr6_1:4246372-4246391 | Msa0869980:CDS | 50.0% |
| !! | GCAATGAGGCTTTGGAGCTA+AGG | + | chr6_1:4246848-4246867 | Msa0869980:CDS | 50.0% |
| ! | TTTTGACAGTGGCATGCCGT+CGG | - | chr6_1:4247619-4247638 | None:intergenic | 50.0% |
| GACTAGTGGAAACGCGAGAG+AGG | + | chr6_1:4242714-4242733 | Msa0869980:five_prime_UTR | 55.0% | |
| ! | CATCCCCGTTGGTTATGGGT+AGG | + | chr6_1:4243286-4243305 | Msa0869980:intron | 55.0% |
| ACGAGAATCGGGTATGGGGA+CGG | + | chr6_1:4243324-4243343 | Msa0869980:intron | 55.0% | |
| ATGGGGACGGTACGAGAATC+GGG | + | chr6_1:4243337-4243356 | Msa0869980:intron | 55.0% | |
| GACGGTACGAGAATCGGGTA+TGG | + | chr6_1:4243342-4243361 | Msa0869980:intron | 55.0% | |
| CGGTACGAGAATCGGGTATG+GGG | + | chr6_1:4243344-4243363 | Msa0869980:intron | 55.0% | |
| ACGAGAATCGGGTATGGGGA+CGG | + | chr6_1:4243324-4243343 | Msa0869980:intron | 55.0% | |
| AGTAGGCATGACAATGGGGC+GGG | - | chr6_1:4243395-4243414 | None:intergenic | 55.0% | |
| CAGTAGGCATGACAATGGGG+CGG | - | chr6_1:4243396-4243415 | None:intergenic | 55.0% | |
| !! | GAGTTTGATGGTGCAGCCAG+CGG | + | chr6_1:4246198-4246217 | Msa0869980:CDS | 55.0% |
| !! | AGTTTGATGGTGCAGCCAGC+GGG | + | chr6_1:4246199-4246218 | Msa0869980:CDS | 55.0% |
| CACGGGTATGGGACGGGTAA+CGG | + | chr6_1:4242889-4242908 | Msa0869980:intron | 60.0% | |
| ACGGGTATGGGACGGGTAAC+GGG | + | chr6_1:4242890-4242909 | Msa0869980:intron | 60.0% | |
| !! | GGGACGGGTAACGGGCATAT+AGG | + | chr6_1:4242898-4242917 | Msa0869980:intron | 60.0% |
| ATGCGGAGACAGGGATGGAG+CGG | + | chr6_1:4243220-4243239 | Msa0869980:intron | 60.0% | |
| AACTCCATCCCCATCCCCGA+CGG | - | chr6_1:4243258-4243277 | None:intergenic | 60.0% | |
| CGAGAATCGGGTATGGGGAC+GGG | + | chr6_1:4243325-4243344 | Msa0869980:intron | 60.0% | |
| GAGAATCGGGTATGGGGACG+GGG | + | chr6_1:4243326-4243345 | Msa0869980:intron | 60.0% | |
| GTAGGCATGACAATGGGGCG+GGG | - | chr6_1:4243394-4243413 | None:intergenic | 60.0% | |
| AGTATAGCTCCGGCACCAGC+TGG | - | chr6_1:4246234-4246253 | None:intergenic | 60.0% | |
| TGCGGAGACAGGGATGGAGC+GGG | + | chr6_1:4243221-4243240 | Msa0869980:intron | 65.0% | |
| ATACCCGAACCCGTCGGGGA+TGG | + | chr6_1:4243245-4243264 | Msa0869980:intron | 65.0% | |
| TACCCGAACCCGTCGGGGAT+GGG | + | chr6_1:4243246-4243265 | Msa0869980:intron | 65.0% | |
| ! | ATCCCCATCCCCGACGGGTT+CGG | - | chr6_1:4243252-4243271 | None:intergenic | 65.0% |
| ACTCCATCCCCATCCCCGAC+GGG | - | chr6_1:4243257-4243276 | None:intergenic | 65.0% | |
| CATGACAATGGGGCGGGGTG+GGG | - | chr6_1:4243389-4243408 | None:intergenic | 65.0% | |
| GCATGACAATGGGGCGGGGT+GGG | - | chr6_1:4243390-4243409 | None:intergenic | 65.0% | |
| AATCCCGGACCAGCTGGTGC+CGG | + | chr6_1:4246222-4246241 | Msa0869980:CDS | 65.0% | |
| GCGGAGACAGGGATGGAGCG+GGG | + | chr6_1:4243222-4243241 | Msa0869980:intron | 70.0% | |
| GCGGGGATACCCGAACCCGT+CGG | + | chr6_1:4243239-4243258 | Msa0869980:intron | 70.0% | |
| CGGGGATACCCGAACCCGTC+GGG | + | chr6_1:4243240-4243259 | Msa0869980:intron | 70.0% | |
| GGGGATACCCGAACCCGTCG+GGG | + | chr6_1:4243241-4243260 | Msa0869980:intron | 70.0% | |
| ACCCGAACCCGTCGGGGATG+GGG | + | chr6_1:4243247-4243266 | Msa0869980:intron | 70.0% | |
| ! | TCCCCATCCCCGACGGGTTC+GGG | - | chr6_1:4243251-4243270 | None:intergenic | 70.0% |
| GAACCCGTCGGGGATGGGGA+TGG | + | chr6_1:4243251-4243270 | Msa0869980:intron | 70.0% | |
| ACAATGGGGCGGGGTGGGGA+CGG | - | chr6_1:4243385-4243404 | None:intergenic | 70.0% | |
| GGCATGACAATGGGGCGGGG+TGG | - | chr6_1:4243391-4243410 | None:intergenic | 70.0% | |
| GGTGCAGCCAGCGGGAATCC+CGG | + | chr6_1:4246207-4246226 | Msa0869980:CDS | 70.0% | |
| AGCTGGTCCGGGATTCCCGC+TGG | - | chr6_1:4246217-4246236 | None:intergenic | 70.0% | |
| AGCGGGAATCCCGGACCAGC+TGG | + | chr6_1:4246216-4246235 | Msa0869980:CDS | 70.0% | |
| AGCTCCGGCACCAGCTGGTC+CGG | - | chr6_1:4246229-4246248 | None:intergenic | 70.0% | |
| CAATGGGGCGGGGTGGGGAC+GGG | - | chr6_1:4243384-4243403 | None:intergenic | 75.0% | |
| GCTCCGGCACCAGCTGGTCC+GGG | - | chr6_1:4246228-4246247 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4242657 | 4247856 | 4242657 | ID=Msa0869980;Name=Msa0869980 |
| chr6_1 | mRNA | 4242657 | 4247856 | 4242657 | ID=Msa0869980-mRNA-1;Parent=Msa0869980;Name=Msa0869980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=79|1|1|1|0.66|0.71|7|248|157 |
| chr6_1 | exon | 4242657 | 4242735 | 4242657 | ID=Msa0869980-mRNA-1:exon:1328;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4243838 | 4243882 | 4243838 | ID=Msa0869980-mRNA-1:exon:1329;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4246183 | 4246275 | 4246183 | ID=Msa0869980-mRNA-1:exon:1330;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4246369 | 4246512 | 4246369 | ID=Msa0869980-mRNA-1:exon:1331;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4246802 | 4246909 | 4246802 | ID=Msa0869980-mRNA-1:exon:1332;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4247183 | 4247234 | 4247183 | ID=Msa0869980-mRNA-1:exon:1333;Parent=Msa0869980-mRNA-1 |
| chr6_1 | exon | 4247577 | 4247856 | 4247577 | ID=Msa0869980-mRNA-1:exon:1334;Parent=Msa0869980-mRNA-1 |
| chr6_1 | five_prime_UTR | 4242657 | 4242735 | 4242657 | ID=Msa0869980-mRNA-1:five_prime_utr;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4243838 | 4243882 | 4243838 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4246183 | 4246275 | 4246183 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4246369 | 4246512 | 4246369 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4246802 | 4246909 | 4246802 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4247183 | 4247234 | 4247183 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | CDS | 4247577 | 4247608 | 4247577 | ID=Msa0869980-mRNA-1:cds;Parent=Msa0869980-mRNA-1 |
| chr6_1 | three_prime_UTR | 4247609 | 4247856 | 4247609 | ID=Msa0869980-mRNA-1:three_prime_utr;Parent=Msa0869980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
