AlfalfaGEDB | Msa0903300

M. sativa cultivar zhongmu-4 / Msa0903300

KEGG: -
GO: -
PFAM: PF13456.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903300	XP_024641758.1	66.242	157	5	1	1	109	1	157	2.45e-60	192

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0243100	Msa0903300	0.804745	1.864209e-49	-8.615850e-47
Msa0287650	Msa0903300	0.802018	6.845358e-49	-8.615850e-47
Msa0869980	Msa0903300	0.851515	8.438037e-61	-8.615850e-47
Msa0903300	Msa0935710	0.892609	1.355589e-74	-8.615850e-47
Msa0903300	Msa0972670	0.879791	9.334832e-70	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903300	MtrunA17_Chr6g0451421	45.390	141	29	1	14	106	5	145	2.26e-29	103
Msa0903300	MtrunA17_Chr6g0451411	41.429	140	34	1	16	107	175	314	2.98e-27	101
Msa0903300	MtrunA17_Chr2g0325301	38.971	136	35	1	17	104	10	145	3.79e-25	92.4
Msa0903300	MtrunA17_Chr2g0329701	38.406	138	37	1	17	106	234	371	1.31e-23	92.8
Msa0903300	MtrunA17_Chr6g0451451	66.667	63	21	0	47	109	25	87	4.74e-23	85.1
Msa0903300	MtrunA17_Chr7g0264421	37.681	138	38	1	17	106	204	341	6.97e-23	90.5
Msa0903300	MtrunA17_Chr6g0451441	38.000	150	37	2	16	109	319	468	5.75e-19	80.5

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903300	AT3G01410.2	36.029	136	39	1	17	104	154	289	3.25e-21	85.9
Msa0903300	AT3G01410.1	36.029	136	39	1	17	104	154	289	3.25e-21	85.9

Showing 1 to 2 of 2 entries

Previous1Next

Find 42 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATTAGAGCTGGAAT+TGG	0.422193	6_2:+403675	Msa0903300:five_prime_UTR
AAGCTGATGCTCAAGCAAAT+TGG	0.259153	6_2:+407328	Msa0903300:CDS
AATCCCGGACCAGCTGGTGC+CGG	0.539704	6_2:+406354	Msa0903300:CDS
AATTGGGCCATCTTTCTTGG+AGG	0.525253	6_2:+407345	Msa0903300:CDS
ACATCAACAATGCTTATTTA+AGG	0.208439	6_2:+406950	Msa0903300:CDS
ACTTCAGTTTAGCAAATTGG+TGG	0.529105	6_2:+407808	Msa0903300:three_prime_UTR
AGCTCCGGCACCAGCTGGTC+CGG	0.304765	6_2:-406358	None:intergenic
AGCTGATGCTCAAGCAAATT+GGG	0.360173	6_2:+407329	Msa0903300:CDS
AGCTGGTCCGGGATTCCCGC+TGG	0.458523	6_2:-406346	None:intergenic
AGTACTTCAGTTTAGCAAAT+TGG	0.284439	6_2:+407805	Msa0903300:three_prime_UTR

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGCATTACAACATTTCTCT+AGG	+	chr6_2:404168-404187	Msa0903300:intron	30.0%
TGCATTACAACATTTCTCTA+GGG	+	chr6_2:404169-404188	Msa0903300:intron	30.0%
GGATGTTAATTCTATACGTA+GGG	+	chr6_2:404744-404763	Msa0903300:intron	30.0%
GGAATTATAATCCAGTAAGT+CGG	+	chr6_2:404852-404871	Msa0903300:intron	30.0%
GAATAGAGTTGAAGGTAAAA+TGG	+	chr6_2:405037-405056	Msa0903300:intron	30.0%
TTCATAATATATGCAAGGTC+CGG	+	chr6_2:405261-405280	Msa0903300:intron	30.0%
TTGTAGTTTCTGCAAAATCA+TGG	-	chr6_2:405315-405334	None:intergenic	30.0%
AGTATGTATAGCCATATGTT+AGG	+	chr6_2:405449-405468	Msa0903300:intron	30.0%
AAAGCTTCATATCAATTGCT+TGG	+	chr6_2:405701-405720	Msa0903300:intron	30.0%
TAGTAATCAAGCAATTCATG+TGG	-	chr6_2:406143-406162	None:intergenic	30.0%

Showing 1 to 10 of 238 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	403668	407988	403668	ID=Msa0903300;Name=Msa0903300
chr6_2	mRNA	403668	407988	403668	ID=Msa0903300-mRNA-1;Parent=Msa0903300;Name=Msa0903300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=79\|0.8\|1\|1\|0.8\|0.83\|6\|248\|109
chr6_2	exon	403668	403746	403668	ID=Msa0903300-mRNA-1:exon:212;Parent=Msa0903300-mRNA-1
chr6_2	exon	404821	404865	404821	ID=Msa0903300-mRNA-1:exon:213;Parent=Msa0903300-mRNA-1
chr6_2	exon	406315	406407	406315	ID=Msa0903300-mRNA-1:exon:214;Parent=Msa0903300-mRNA-1
chr6_2	exon	406934	407041	406934	ID=Msa0903300-mRNA-1:exon:215;Parent=Msa0903300-mRNA-1
chr6_2	exon	407315	407366	407315	ID=Msa0903300-mRNA-1:exon:216;Parent=Msa0903300-mRNA-1
chr6_2	exon	407709	407988	407709	ID=Msa0903300-mRNA-1:exon:217;Parent=Msa0903300-mRNA-1
chr6_2	five_prime_UTR	403668	403746	403668	ID=Msa0903300-mRNA-1:five_prime_utr;Parent=Msa0903300-mRNA-1
chr6_2	CDS	404821	404865	404821	ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1
chr6_2	CDS	406315	406407	406315	ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1
chr6_2	CDS	406934	407041	406934	ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1
chr6_2	CDS	407315	407366	407315	ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1
chr6_2	CDS	407709	407740	407709	ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1
chr6_2	three_prime_UTR	407741	407988	407741	ID=Msa0903300-mRNA-1:three_prime_utr;Parent=Msa0903300-mRNA-1

Gene Sequence	>Msa0903300 ATGCATCGTTGTGGTATTGCAATCGTAGAGAGGAATTATAATCCACTTTCTTGTATCCTTGAGTTTGATGGTGCAGCCAGCGGGAATCCCGGACCAGCTGGTGCCGGAGCTATACTGCGTACTGAAAATGGGAGTCTGTTGAAAGGTTTATGGAACATCAACAATGCTTATTTAAGGAACTTATGCAATGAGGCTTTGGAGCTAAGGGATAACTTTCACTCATTCAGCATCTTTTACATTCCTAGGGAATATAACGCTGAAGCTGATGCTCAAGCAAATTGGGCCATCTTTCTTGGAGACGGTCAAGTTCAAGAAGATTGCATGAATTAA
Protein sequence	>Msa0903300 MHRCGIAIVERNYNPLSCILEFDGAASGNPGPAGAGAILRTENGSLLKGLWNINNAYLRNLCNEALELRDNFHSFSIFYIPREYNAEADAQANWAIFLGDGQVQEDCMN*