Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903300 | XP_024641758.1 | 66.242 | 157 | 5 | 1 | 1 | 109 | 1 | 157 | 2.45e-60 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0243100 | Msa0903300 | 0.804745 | 1.864209e-49 | -8.615850e-47 |
| Msa0287650 | Msa0903300 | 0.802018 | 6.845358e-49 | -8.615850e-47 |
| Msa0869980 | Msa0903300 | 0.851515 | 8.438037e-61 | -8.615850e-47 |
| Msa0903300 | Msa0935710 | 0.892609 | 1.355589e-74 | -8.615850e-47 |
| Msa0903300 | Msa0972670 | 0.879791 | 9.334832e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903300 | MtrunA17_Chr6g0451421 | 45.390 | 141 | 29 | 1 | 14 | 106 | 5 | 145 | 2.26e-29 | 103 |
| Msa0903300 | MtrunA17_Chr6g0451411 | 41.429 | 140 | 34 | 1 | 16 | 107 | 175 | 314 | 2.98e-27 | 101 |
| Msa0903300 | MtrunA17_Chr2g0325301 | 38.971 | 136 | 35 | 1 | 17 | 104 | 10 | 145 | 3.79e-25 | 92.4 |
| Msa0903300 | MtrunA17_Chr2g0329701 | 38.406 | 138 | 37 | 1 | 17 | 106 | 234 | 371 | 1.31e-23 | 92.8 |
| Msa0903300 | MtrunA17_Chr6g0451451 | 66.667 | 63 | 21 | 0 | 47 | 109 | 25 | 87 | 4.74e-23 | 85.1 |
| Msa0903300 | MtrunA17_Chr7g0264421 | 37.681 | 138 | 38 | 1 | 17 | 106 | 204 | 341 | 6.97e-23 | 90.5 |
| Msa0903300 | MtrunA17_Chr6g0451441 | 38.000 | 150 | 37 | 2 | 16 | 109 | 319 | 468 | 5.75e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903300 | AT3G01410.2 | 36.029 | 136 | 39 | 1 | 17 | 104 | 154 | 289 | 3.25e-21 | 85.9 |
| Msa0903300 | AT3G01410.1 | 36.029 | 136 | 39 | 1 | 17 | 104 | 154 | 289 | 3.25e-21 | 85.9 |
Find 42 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACAGTTGAAAGGTTTA+TGG | 0.191806 | 6_2:+406926 | Msa0903300:intron |
| GCTATACTGCGTACTGAAAA+TGG | 0.195325 | 6_2:+406378 | Msa0903300:CDS |
| ACATCAACAATGCTTATTTA+AGG | 0.208439 | 6_2:+406950 | Msa0903300:CDS |
| TCTTGTATCCTTGAGTTTGA+TGG | 0.246738 | 6_2:+406318 | Msa0903300:CDS |
| ATGCCCACTATTAGCAGTTT+AGG | 0.253049 | 6_2:+407907 | Msa0903300:three_prime_UTR |
| AAGCTGATGCTCAAGCAAAT+TGG | 0.259153 | 6_2:+407328 | Msa0903300:CDS |
| GCAAATTGGGCCATCTTTCT+TGG | 0.273597 | 6_2:+407342 | Msa0903300:CDS |
| AGTACTTCAGTTTAGCAAAT+TGG | 0.284439 | 6_2:+407805 | Msa0903300:three_prime_UTR |
| TGCCCACTATTAGCAGTTTA+GGG | 0.295761 | 6_2:+407908 | Msa0903300:three_prime_UTR |
| AGCTCCGGCACCAGCTGGTC+CGG | 0.304765 | 6_2:-406358 | None:intergenic |
| AGCTGATGCTCAAGCAAATT+GGG | 0.360173 | 6_2:+407329 | Msa0903300:CDS |
| GAACTTATGCAATGAGGCTT+TGG | 0.369368 | 6_2:+406972 | Msa0903300:CDS |
| CACCTCTCTCGCGTTTCCAC+TGG | 0.407321 | 6_2:-403727 | None:intergenic |
| AAACACATTAGAGCTGGAAT+TGG | 0.422193 | 6_2:+403675 | Msa0903300:five_prime_UTR |
| AGTCCCTAAACTGCTAATAG+TGG | 0.428944 | 6_2:-407911 | None:intergenic |
| AGCTGGTCCGGGATTCCCGC+TGG | 0.458523 | 6_2:-406346 | None:intergenic |
| ATAGTGGGCATCTACACATT+AGG | 0.460561 | 6_2:-407895 | None:intergenic |
| GCAATGAGGCTTTGGAGCTA+AGG | 0.469965 | 6_2:+406980 | Msa0903300:CDS |
| CTATACTGCGTACTGAAAAT+GGG | 0.472624 | 6_2:+406379 | Msa0903300:CDS |
| GGTGCAGCCAGCGGGAATCC+CGG | 0.474643 | 6_2:+406339 | Msa0903300:CDS |
| GCGTACTGAAAATGGGAGTC+TGG | 0.474898 | 6_2:+406386 | Msa0903300:CDS |
| TTCAGTACGCAGTATAGCTC+CGG | 0.494280 | 6_2:-406373 | None:intergenic |
| TGGTGGTTTCACATGTGAAC+TGG | 0.504020 | 6_2:+407825 | Msa0903300:three_prime_UTR |
| GCTCCGGCACCAGCTGGTCC+GGG | 0.509262 | 6_2:-406357 | None:intergenic |
| CAATGAGGCTTTGGAGCTAA+GGG | 0.513996 | 6_2:+406981 | Msa0903300:CDS |
| AGTATAGCTCCGGCACCAGC+TGG | 0.523879 | 6_2:-406363 | None:intergenic |
| AATTGGGCCATCTTTCTTGG+AGG | 0.525253 | 6_2:+407345 | Msa0903300:CDS |
| ACTTCAGTTTAGCAAATTGG+TGG | 0.529105 | 6_2:+407808 | Msa0903300:three_prime_UTR |
| AATCCCGGACCAGCTGGTGC+CGG | 0.539704 | 6_2:+406354 | Msa0903300:CDS |
| AGTTTGATGGTGCAGCCAGC+GGG | 0.541634 | 6_2:+406331 | Msa0903300:CDS |
| TCTAACAAACACATTAGAGC+TGG | 0.541796 | 6_2:+403669 | Msa0903300:five_prime_UTR |
| GGTCTAACCTCCAAGAAAGA+TGG | 0.555833 | 6_2:-407352 | None:intergenic |
| TTTAAGGAACTTATGCAATG+AGG | 0.557886 | 6_2:+406966 | Msa0903300:CDS |
| GTCCCTAAACTGCTAATAGT+GGG | 0.566813 | 6_2:-407910 | None:intergenic |
| CATGTGAACTGGCATGTCAA+AGG | 0.585422 | 6_2:+407836 | Msa0903300:three_prime_UTR |
| GAGTTTGATGGTGCAGCCAG+CGG | 0.600495 | 6_2:+406330 | Msa0903300:CDS |
| TAGAGAGAAATCACGACCAG+TGG | 0.608615 | 6_2:+403711 | Msa0903300:five_prime_UTR |
| TGGCTGCACCATCAAACTCA+AGG | 0.610487 | 6_2:-406326 | None:intergenic |
| GACCAGTGGAAACGCGAGAG+AGG | 0.612317 | 6_2:+403725 | Msa0903300:five_prime_UTR |
| GTGGTATTGCAATCGTAGAG+AGG | 0.645749 | 6_2:+404831 | Msa0903300:CDS |
| CTTGTCCAGATGCATCGTTG+TGG | 0.664152 | 6_2:+404812 | Msa0903300:intron |
| ATGAATTAACGATCATCCGA+CGG | 0.680586 | 6_2:+407732 | Msa0903300:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATAATTTTCTGCATT+CGG | - | chr6_2:403966-403985 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGCATTTTAGT+TGG | + | chr6_2:404722-404741 | Msa0903300:intron | 15.0% |
| !!! | TAATTTATTGCATTTTAGTT+GGG | + | chr6_2:404723-404742 | Msa0903300:intron | 15.0% |
| !! | TATAAATTGTTGAAAAATCT+TGG | + | chr6_2:404899-404918 | Msa0903300:intron | 15.0% |
| !!! | ACAAATTATTTTTTTGCTTA+TGG | + | chr6_2:405542-405561 | Msa0903300:intron | 15.0% |
| !! | TTACCTTATAGATAAATTAA+AGG | - | chr6_2:406033-406052 | None:intergenic | 15.0% |
| !! | CTTCTTCTTTATATATTCTT+CGG | + | chr6_2:403759-403778 | Msa0903300:intron | 20.0% |
| !!! | AAAAATAATTTTCTGCATTC+GGG | - | chr6_2:403965-403984 | None:intergenic | 20.0% |
| !! | TAAAAAAATTATTCAATGCG+CGG | + | chr6_2:404218-404237 | Msa0903300:intron | 20.0% |
| !!! | TAATTTTTTCTCTTTCATCT+AGG | - | chr6_2:404604-404623 | None:intergenic | 20.0% |
| !!! | GTTGTGATAAAATGTAATTT+TGG | + | chr6_2:404987-405006 | Msa0903300:intron | 20.0% |
| !! | CCTCAAAAATTATTCTAATA+AGG | - | chr6_2:405155-405174 | None:intergenic | 20.0% |
| !!! | CCTTATTAGAATAATTTTTG+AGG | + | chr6_2:405152-405171 | Msa0903300:intron | 20.0% |
| !! | TTTATAGTGCAATATATAGT+TGG | + | chr6_2:405670-405689 | Msa0903300:intron | 20.0% |
| !!! | TAAGAAAAAACTTCTACTTT+TGG | + | chr6_2:405968-405987 | Msa0903300:intron | 20.0% |
| !!! | GAACCTTTAATTTATCTATA+AGG | + | chr6_2:406027-406046 | Msa0903300:intron | 20.0% |
| !! | TTGTTCATAAAAAAGATACA+TGG | + | chr6_2:406691-406710 | Msa0903300:intron | 20.0% |
| !! | TTCTTTGTTAAAAACAACTA+TGG | + | chr6_2:406744-406763 | Msa0903300:intron | 20.0% |
| !! | ATGAAACTAAATGAATTCAA+AGG | - | chr6_2:406801-406820 | None:intergenic | 20.0% |
| !! | TTAACAATATCTAACCAATT+AGG | - | chr6_2:406831-406850 | None:intergenic | 20.0% |
| !! | AAAACAATTAGATTGGAATT+TGG | + | chr6_2:407115-407134 | Msa0903300:intron | 20.0% |
| !! | AAACAATTAGATTGGAATTT+GGG | + | chr6_2:407116-407135 | Msa0903300:intron | 20.0% |
| !!! | TTTTACTGTCAAAATACAAA+TGG | + | chr6_2:407190-407209 | Msa0903300:intron | 20.0% |
| !!! | TGTTCTTTTGAAAATGTTTA+AGG | + | chr6_2:407293-407312 | Msa0903300:intron | 20.0% |
| !! | GTTCAAAAGAATTATCTAAA+TGG | - | chr6_2:407635-407654 | None:intergenic | 20.0% |
| ! | CTTTATATATTCTTCGGATT+AGG | + | chr6_2:403765-403784 | Msa0903300:intron | 25.0% |
| ! | AAAACCAGTTAAATTAGGTT+TGG | - | chr6_2:403828-403847 | None:intergenic | 25.0% |
| ! | CAGAAAAAACCAGTTAAATT+AGG | - | chr6_2:403833-403852 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTCTGTTTTGATT+GGG | + | chr6_2:403841-403860 | Msa0903300:intron | 25.0% |
| ! | AAAGAAGCAACTAAATCAAT+CGG | + | chr6_2:404067-404086 | Msa0903300:intron | 25.0% |
| !!! | GTTTTTTTGAAGAAGCTAAA+CGG | + | chr6_2:404100-404119 | Msa0903300:intron | 25.0% |
| ! | ATGTAAAAAATAGCAGAAGT+AGG | - | chr6_2:404399-404418 | None:intergenic | 25.0% |
| ! | TTTATCTTGCTAAGTAGAAT+CGG | - | chr6_2:404450-404469 | None:intergenic | 25.0% |
| ! | AATGCAATGCTATTAACATA+TGG | + | chr6_2:404495-404514 | Msa0903300:intron | 25.0% |
| !! | TATAAAATAAACCGACTTAC+TGG | - | chr6_2:404866-404885 | None:intergenic | 25.0% |
| ! | AATTGATAGAATAGAGTTGA+AGG | + | chr6_2:405029-405048 | Msa0903300:intron | 25.0% |
| ! | GACAATTCATAATATATGCA+AGG | + | chr6_2:405256-405275 | Msa0903300:intron | 25.0% |
| ! | TACGATTTAGAAAATCACAA+TGG | + | chr6_2:405339-405358 | Msa0903300:intron | 25.0% |
| ! | AAATTGTATAAGCTTATGTC+TGG | - | chr6_2:405397-405416 | None:intergenic | 25.0% |
| ! | AGAAAACTTATGTATAGTGT+AGG | + | chr6_2:405738-405757 | Msa0903300:intron | 25.0% |
| ! | CTTTATAGAGGATTTCAATT+TGG | - | chr6_2:405778-405797 | None:intergenic | 25.0% |
| ! | TGACTGTTAAAACTTTATAG+AGG | - | chr6_2:405790-405809 | None:intergenic | 25.0% |
| ! | CAAAAACTGAATAGTTTCTT+TGG | + | chr6_2:406103-406122 | Msa0903300:intron | 25.0% |
| ! | TGAAATCTTCTGTATAGTTT+AGG | + | chr6_2:406170-406189 | Msa0903300:intron | 25.0% |
| ! | AATATCTAACCAATTAGGAA+AGG | - | chr6_2:406826-406845 | None:intergenic | 25.0% |
| ! | TGCAAAACAATAACATATGT+TGG | - | chr6_2:406910-406929 | None:intergenic | 25.0% |
| ! | ACATCAACAATGCTTATTTA+AGG | + | chr6_2:406950-406969 | Msa0903300:CDS | 25.0% |
| ! | AATTGCTAAATATATACCCT+AGG | - | chr6_2:407039-407058 | None:intergenic | 25.0% |
| ! | GAAGTTGAAAACAATTAGAT+TGG | + | chr6_2:407108-407127 | Msa0903300:intron | 25.0% |
| !! | CATTTTCAAAAGAACAAACA+CGG | - | chr6_2:407289-407308 | None:intergenic | 25.0% |
| !! | ATTGAACATTTGAAACCTAT+AGG | - | chr6_2:407396-407415 | None:intergenic | 25.0% |
| !!! | AGATTCATTTTTCGTTTCAA+AGG | - | chr6_2:407489-407508 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTAAAGCAACTT+TGG | - | chr6_2:407566-407585 | None:intergenic | 25.0% |
| !!! | ATCTTACACTTTTTTGTAGA+CGG | + | chr6_2:407690-407709 | Msa0903300:intron | 25.0% |
| ! | AGTTAAATTAGGTTTGGTTC+GGG | - | chr6_2:403822-403841 | None:intergenic | 30.0% |
| ! | CAGTTAAATTAGGTTTGGTT+CGG | - | chr6_2:403823-403842 | None:intergenic | 30.0% |
| !!! | CTGGTTTTTTCTGTTTTGAT+TGG | + | chr6_2:403840-403859 | Msa0903300:intron | 30.0% |
| !!! | TTTTCTGTTTTGATTGGGTT+TGG | + | chr6_2:403846-403865 | Msa0903300:intron | 30.0% |
| !!! | TTTCTGTTTTGATTGGGTTT+GGG | + | chr6_2:403847-403866 | Msa0903300:intron | 30.0% |
| ATGCATTACAACATTTCTCT+AGG | + | chr6_2:404168-404187 | Msa0903300:intron | 30.0% | |
| TGCATTACAACATTTCTCTA+GGG | + | chr6_2:404169-404188 | Msa0903300:intron | 30.0% | |
| ! | CTCAACTAATTTGAGTTAGT+TGG | + | chr6_2:404563-404582 | Msa0903300:intron | 30.0% |
| ! | AACTAATTTGAGTTAGTTGG+AGG | + | chr6_2:404566-404585 | Msa0903300:intron | 30.0% |
| GGATGTTAATTCTATACGTA+GGG | + | chr6_2:404744-404763 | Msa0903300:intron | 30.0% | |
| GGAATTATAATCCAGTAAGT+CGG | + | chr6_2:404852-404871 | Msa0903300:intron | 30.0% | |
| GAATAGAGTTGAAGGTAAAA+TGG | + | chr6_2:405037-405056 | Msa0903300:intron | 30.0% | |
| TTCATAATATATGCAAGGTC+CGG | + | chr6_2:405261-405280 | Msa0903300:intron | 30.0% | |
| TTGTAGTTTCTGCAAAATCA+TGG | - | chr6_2:405315-405334 | None:intergenic | 30.0% | |
| AGTATGTATAGCCATATGTT+AGG | + | chr6_2:405449-405468 | Msa0903300:intron | 30.0% | |
| AAAGCTTCATATCAATTGCT+TGG | + | chr6_2:405701-405720 | Msa0903300:intron | 30.0% | |
| TAGTAATCAAGCAATTCATG+TGG | - | chr6_2:406143-406162 | None:intergenic | 30.0% | |
| ! | CTTTACAGAGGATTTTCATT+TGG | - | chr6_2:406210-406229 | None:intergenic | 30.0% |
| TGATTGTCAAAACTTTACAG+AGG | - | chr6_2:406222-406241 | None:intergenic | 30.0% | |
| ACTTTGTGCAACAATTCATT+TGG | + | chr6_2:406414-406433 | Msa0903300:intron | 30.0% | |
| GTTTCATATCCTTTCCTAAT+TGG | + | chr6_2:406814-406833 | Msa0903300:intron | 30.0% | |
| !! | ATTGTTTTGCAACAGTTGAA+AGG | + | chr6_2:406919-406938 | Msa0903300:intron | 30.0% |
| TTTAAGGAACTTATGCAATG+AGG | + | chr6_2:406966-406985 | Msa0903300:CDS | 30.0% | |
| AAACCAAACAAAAAGCAAAG+AGG | - | chr6_2:407591-407610 | None:intergenic | 30.0% | |
| AGTACTTCAGTTTAGCAAAT+TGG | + | chr6_2:407805-407824 | Msa0903300:three_prime_UTR | 30.0% | |
| TCTAACAAACACATTAGAGC+TGG | + | chr6_2:403669-403688 | Msa0903300:five_prime_UTR | 35.0% | |
| AAACACATTAGAGCTGGAAT+TGG | + | chr6_2:403675-403694 | Msa0903300:five_prime_UTR | 35.0% | |
| CGAACCAAACCTAATTTAAC+TGG | + | chr6_2:403821-403840 | Msa0903300:intron | 35.0% | |
| ! | TTTTCCGCGATTTCAAAACA+CGG | + | chr6_2:403882-403901 | Msa0903300:intron | 35.0% |
| ! | ATAATTTTCTGCATTCGGGA+CGG | - | chr6_2:403961-403980 | None:intergenic | 35.0% |
| GCATTACAACATTTCTCTAG+GGG | + | chr6_2:404170-404189 | Msa0903300:intron | 35.0% | |
| GGGATGTTAATTCTATACGT+AGG | + | chr6_2:404743-404762 | Msa0903300:intron | 35.0% | |
| ! | GTAGGGTGTTACATTCTTTA+CGG | + | chr6_2:404761-404780 | Msa0903300:intron | 35.0% |
| ! | ATGTGACATTTTGAGCATGA+AGG | - | chr6_2:404944-404963 | None:intergenic | 35.0% |
| TCATAATATATGCAAGGTCC+GGG | + | chr6_2:405262-405281 | Msa0903300:intron | 35.0% | |
| TAGTTTCTGCAAAATCATGG+TGG | - | chr6_2:405312-405331 | None:intergenic | 35.0% | |
| TATAGCCATATGTTAGGTTC+TGG | + | chr6_2:405455-405474 | Msa0903300:intron | 35.0% | |
| CTAATCCAGAACCTAACATA+TGG | - | chr6_2:405463-405482 | None:intergenic | 35.0% | |
| !! | CATATGTTAGGTTCTGGATT+AGG | + | chr6_2:405461-405480 | Msa0903300:intron | 35.0% |
| ATAGAGGATTTCAATTTGGC+AGG | - | chr6_2:405774-405793 | None:intergenic | 35.0% | |
| ! | ACAGAGGATTTTCATTTGGT+AGG | - | chr6_2:406206-406225 | None:intergenic | 35.0% |
| TCTTGTATCCTTGAGTTTGA+TGG | + | chr6_2:406318-406337 | Msa0903300:CDS | 35.0% | |
| CTATACTGCGTACTGAAAAT+GGG | + | chr6_2:406379-406398 | Msa0903300:CDS | 35.0% | |
| AAGCTGTAAGGAAAGGATAT+AGG | + | chr6_2:406580-406599 | Msa0903300:intron | 35.0% | |
| TATAGGAACATCACTGTCTA+CGG | + | chr6_2:406597-406616 | Msa0903300:intron | 35.0% | |
| ! | GACCTGATTGATAACAAGTT+CGG | - | chr6_2:406628-406647 | None:intergenic | 35.0% |
| ATGAATTCAAAGGAGCCTTT+CGG | - | chr6_2:406791-406810 | None:intergenic | 35.0% | |
| TGCAACAGTTGAAAGGTTTA+TGG | + | chr6_2:406926-406945 | Msa0903300:intron | 35.0% | |
| ! | TCAGCATCTTTTACATTCCT+AGG | + | chr6_2:407019-407038 | Msa0903300:CDS | 35.0% |
| ! | CAGCATCTTTTACATTCCTA+GGG | + | chr6_2:407020-407039 | Msa0903300:CDS | 35.0% |
| ! | ACGGTATTTGTTAACTGTTG+AGG | - | chr6_2:407270-407289 | None:intergenic | 35.0% |
| AGGTACTACGAAAAGTCTTA+AGG | - | chr6_2:407376-407395 | None:intergenic | 35.0% | |
| ! | AGACTTTTCGTAGTACCTAT+AGG | + | chr6_2:407378-407397 | Msa0903300:intron | 35.0% |
| CATTGCAGTTCTTGTTCATT+AGG | - | chr6_2:407429-407448 | None:intergenic | 35.0% | |
| AAATGGTTTCAAAGCAGCTT+TGG | - | chr6_2:407460-407479 | None:intergenic | 35.0% | |
| CGTTTCAAAGGATGCTTAAA+TGG | - | chr6_2:407477-407496 | None:intergenic | 35.0% | |
| ! | GTGCAGAGTTCTGATATATT+AGG | - | chr6_2:407533-407552 | None:intergenic | 35.0% |
| ! | CAAAAAGCAAAGAGGCTTTT+TGG | - | chr6_2:407583-407602 | None:intergenic | 35.0% |
| !!! | AAGCCTCTTTGCTTTTTGTT+TGG | + | chr6_2:407585-407604 | Msa0903300:intron | 35.0% |
| ATGAATTAACGATCATCCGA+CGG | + | chr6_2:407732-407751 | Msa0903300:exon | 35.0% | |
| ATGCCACTGTCAAAAACTAT+TGG | + | chr6_2:407756-407775 | Msa0903300:three_prime_UTR | 35.0% | |
| ! | TTGCCAATAGTTTTTGACAG+TGG | - | chr6_2:407762-407781 | None:intergenic | 35.0% |
| ACTTCAGTTTAGCAAATTGG+TGG | + | chr6_2:407808-407827 | Msa0903300:three_prime_UTR | 35.0% | |
| !! | TAAATTAGGTTTGGTTCGGG+CGG | - | chr6_2:403819-403838 | None:intergenic | 40.0% |
| ATTGGGTTTGGGTATGAGTT+TGG | + | chr6_2:403858-403877 | Msa0903300:intron | 40.0% | |
| TTTCCGCGATTTCAAAACAC+GGG | + | chr6_2:403883-403902 | Msa0903300:intron | 40.0% | |
| !!! | ATACCCGTGTTTTGAAATCG+CGG | - | chr6_2:403889-403908 | None:intergenic | 40.0% |
| CGATTTCAAAACACGGGTAT+GGG | + | chr6_2:403889-403908 | Msa0903300:intron | 40.0% | |
| ! | TAATTTTCTGCATTCGGGAC+GGG | - | chr6_2:403960-403979 | None:intergenic | 40.0% |
| AAATTATTCAATGCGCGGAC+AGG | + | chr6_2:404223-404242 | Msa0903300:intron | 40.0% | |
| AATTATTCAATGCGCGGACA+GGG | + | chr6_2:404224-404243 | Msa0903300:intron | 40.0% | |
| GTTCAATTTATCATCCCCGT+TGG | + | chr6_2:404288-404307 | Msa0903300:intron | 40.0% | |
| ! | TTTATCATCCCCGTTGGTTA+TGG | + | chr6_2:404294-404313 | Msa0903300:intron | 40.0% |
| TTACCCTATCCATAACCAAC+GGG | - | chr6_2:404306-404325 | None:intergenic | 40.0% | |
| GTTACCCTATCCATAACCAA+CGG | - | chr6_2:404307-404326 | None:intergenic | 40.0% | |
| GTTGGTTATGGATAGGGTAA+CGG | + | chr6_2:404306-404325 | Msa0903300:intron | 40.0% | |
| TTGGTTATGGATAGGGTAAC+GGG | + | chr6_2:404307-404326 | Msa0903300:intron | 40.0% | |
| ACGGGTAAGTATACGAGAAT+CGG | + | chr6_2:404325-404344 | Msa0903300:intron | 40.0% | |
| GTGATTCTGAGTTTGAATCC+CGG | - | chr6_2:405283-405302 | None:intergenic | 40.0% | |
| !! | TGTTAGGTTCTGGATTAGGT+AGG | + | chr6_2:405465-405484 | Msa0903300:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr6_2:405851-405870 | Msa0903300:intron | 40.0% |
| !! | CTCTTTAACTTGTGCCTTGA+GGG | - | chr6_2:405868-405887 | None:intergenic | 40.0% |
| !! | ACTCTTTAACTTGTGCCTTG+AGG | - | chr6_2:405869-405888 | None:intergenic | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr6_2:405991-406010 | Msa0903300:intron | 40.0% | |
| !! | CTTGTTAACTTGTGCCCTTA+GGG | - | chr6_2:406008-406027 | None:intergenic | 40.0% |
| !! | TCTTGTTAACTTGTGCCCTT+AGG | - | chr6_2:406009-406028 | None:intergenic | 40.0% |
| GCTATACTGCGTACTGAAAA+TGG | + | chr6_2:406378-406397 | Msa0903300:CDS | 40.0% | |
| ! | TTTGATAACCAAGTCCTTCG+CGG | - | chr6_2:406515-406534 | None:intergenic | 40.0% |
| !!! | GAGTATCGCGCATTGATTTT+AGG | + | chr6_2:406549-406568 | Msa0903300:intron | 40.0% |
| TAGGACTGAAACAAGCTGTA+AGG | + | chr6_2:406568-406587 | Msa0903300:intron | 40.0% | |
| CTGAAACAAGCTGTAAGGAA+AGG | + | chr6_2:406573-406592 | Msa0903300:intron | 40.0% | |
| !! | CTCCGAACTTGTTATCAATC+AGG | + | chr6_2:406623-406642 | Msa0903300:intron | 40.0% |
| !!! | CCTTTCGGTTTTTTGGGAAA+GGG | - | chr6_2:406776-406795 | None:intergenic | 40.0% |
| !!! | AAGGAGCCTTTCGGTTTTTT+GGG | - | chr6_2:406782-406801 | None:intergenic | 40.0% |
| !!! | AAAGGAGCCTTTCGGTTTTT+TGG | - | chr6_2:406783-406802 | None:intergenic | 40.0% |
| GAACTTATGCAATGAGGCTT+TGG | + | chr6_2:406972-406991 | Msa0903300:CDS | 40.0% | |
| AAGCTGATGCTCAAGCAAAT+TGG | + | chr6_2:407328-407347 | Msa0903300:CDS | 40.0% | |
| AGCTGATGCTCAAGCAAATT+GGG | + | chr6_2:407329-407348 | Msa0903300:CDS | 40.0% | |
| !! | ATAGTGGGCATCTACACATT+AGG | - | chr6_2:407898-407917 | None:intergenic | 40.0% |
| ATGCCCACTATTAGCAGTTT+AGG | + | chr6_2:407907-407926 | Msa0903300:three_prime_UTR | 40.0% | |
| TGCCCACTATTAGCAGTTTA+GGG | + | chr6_2:407908-407927 | Msa0903300:three_prime_UTR | 40.0% | |
| GTCCCTAAACTGCTAATAGT+GGG | - | chr6_2:407913-407932 | None:intergenic | 40.0% | |
| AGTCCCTAAACTGCTAATAG+TGG | - | chr6_2:407914-407933 | None:intergenic | 40.0% | |
| TAGAGAGAAATCACGACCAG+TGG | + | chr6_2:403711-403730 | Msa0903300:five_prime_UTR | 45.0% | |
| GCGATTTCAAAACACGGGTA+TGG | + | chr6_2:403888-403907 | Msa0903300:intron | 45.0% | |
| TTCAAAACACGGGTATGGGA+CGG | + | chr6_2:403893-403912 | Msa0903300:intron | 45.0% | |
| ! | ATCCCCGTTGGTTATGGATA+GGG | + | chr6_2:404300-404319 | Msa0903300:intron | 45.0% |
| TACCCTATCCATAACCAACG+GGG | - | chr6_2:404305-404324 | None:intergenic | 45.0% | |
| CGGGTAAGTATACGAGAATC+GGG | + | chr6_2:404326-404345 | Msa0903300:intron | 45.0% | |
| TACGAGAATCGGGTATGTGA+TGG | + | chr6_2:404336-404355 | Msa0903300:intron | 45.0% | |
| ACGAGAATCGGGTATGTGAT+GGG | + | chr6_2:404337-404356 | Msa0903300:intron | 45.0% | |
| CAATACCACAACGATGCATC+TGG | - | chr6_2:404820-404839 | None:intergenic | 45.0% | |
| GTGGTATTGCAATCGTAGAG+AGG | + | chr6_2:404831-404850 | Msa0903300:CDS | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | + | chr6_2:405234-405253 | Msa0903300:intron | 45.0% |
| GTTGCTTAACATGTGCCCTA+AGG | + | chr6_2:405990-406009 | Msa0903300:intron | 45.0% | |
| CAAGCAATTCATGTGGAGCT+TGG | - | chr6_2:406136-406155 | None:intergenic | 45.0% | |
| TTCAGTACGCAGTATAGCTC+CGG | - | chr6_2:406376-406395 | None:intergenic | 45.0% | |
| CCCTTTCCCAAAAAACCGAA+AGG | + | chr6_2:406773-406792 | Msa0903300:intron | 45.0% | |
| !!! | GCCTTTCGGTTTTTTGGGAA+AGG | - | chr6_2:406777-406796 | None:intergenic | 45.0% |
| !! | CAATGAGGCTTTGGAGCTAA+GGG | + | chr6_2:406981-407000 | Msa0903300:CDS | 45.0% |
| GCAGTGCTCAATTGAGAAAG+AGG | - | chr6_2:407083-407102 | None:intergenic | 45.0% | |
| GCAAATTGGGCCATCTTTCT+TGG | + | chr6_2:407342-407361 | Msa0903300:CDS | 45.0% | |
| AATTGGGCCATCTTTCTTGG+AGG | + | chr6_2:407345-407364 | Msa0903300:CDS | 45.0% | |
| GGTCTAACCTCCAAGAAAGA+TGG | - | chr6_2:407355-407374 | None:intergenic | 45.0% | |
| TGGTGGTTTCACATGTGAAC+TGG | + | chr6_2:407825-407844 | Msa0903300:three_prime_UTR | 45.0% | |
| CATGTGAACTGGCATGTCAA+AGG | + | chr6_2:407836-407855 | Msa0903300:three_prime_UTR | 45.0% | |
| !!! | TTTATATCATAATTTAATTT+AGG | + | chr6_2:405826-405845 | Msa0903300:intron | 5.0% |
| !!! | TTATATCATAATTTAATTTA+GGG | + | chr6_2:405827-405846 | Msa0903300:intron | 5.0% |
| !! | TTGGTTCGGGCGGTAATCAA+GGG | - | chr6_2:403809-403828 | None:intergenic | 50.0% |
| !! | TTTGGTTCGGGCGGTAATCA+AGG | - | chr6_2:403810-403829 | None:intergenic | 50.0% |
| TCAAAACACGGGTATGGGAC+GGG | + | chr6_2:403894-403913 | Msa0903300:intron | 50.0% | |
| GTTTGGGTATGAGTTCAGGG+TGG | - | chr6_2:403938-403957 | None:intergenic | 50.0% | |
| CGGGTTTGGGTATGAGTTCA+GGG | - | chr6_2:403941-403960 | None:intergenic | 50.0% | |
| ACGGGTTTGGGTATGAGTTC+AGG | - | chr6_2:403942-403961 | None:intergenic | 50.0% | |
| ! | CATCCCCGTTGGTTATGGAT+AGG | + | chr6_2:404299-404318 | Msa0903300:intron | 50.0% |
| CGAGAATCGGGTATGTGATG+GGG | + | chr6_2:404338-404357 | Msa0903300:intron | 50.0% | |
| CAGAAGTAGGCATGACGATG+GGG | - | chr6_2:404386-404405 | None:intergenic | 50.0% | |
| GCAGAAGTAGGCATGACGAT+GGG | - | chr6_2:404387-404406 | None:intergenic | 50.0% | |
| AGCAGAAGTAGGCATGACGA+TGG | - | chr6_2:404388-404407 | None:intergenic | 50.0% | |
| CTTGTCCAGATGCATCGTTG+TGG | + | chr6_2:404812-404831 | Msa0903300:intron | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | + | chr6_2:405229-405248 | Msa0903300:intron | 50.0% | |
| TGGCTGCACCATCAAACTCA+AGG | - | chr6_2:406329-406348 | None:intergenic | 50.0% | |
| GCGTACTGAAAATGGGAGTC+TGG | + | chr6_2:406386-406405 | Msa0903300:CDS | 50.0% | |
| !! | TAGCTCTATCGATTCCGCGA+AGG | + | chr6_2:406498-406517 | Msa0903300:intron | 50.0% |
| !! | TATCGATTCCGCGAAGGACT+TGG | + | chr6_2:406504-406523 | Msa0903300:intron | 50.0% |
| !! | GCAATGAGGCTTTGGAGCTA+AGG | + | chr6_2:406980-406999 | Msa0903300:CDS | 50.0% |
| ! | TTTTGACAGTGGCATGCCGT+CGG | - | chr6_2:407751-407770 | None:intergenic | 50.0% |
| ! | TCTGCATTCGGGACGGGTTT+GGG | - | chr6_2:403954-403973 | None:intergenic | 55.0% |
| ! | TTCTGCATTCGGGACGGGTT+TGG | - | chr6_2:403955-403974 | None:intergenic | 55.0% |
| ATTCAATGCGCGGACAGGGA+TGG | + | chr6_2:404228-404247 | Msa0903300:intron | 55.0% | |
| AAGTAGGCATGACGATGGGG+CGG | - | chr6_2:404383-404402 | None:intergenic | 55.0% | |
| !! | GAGTTTGATGGTGCAGCCAG+CGG | + | chr6_2:406330-406349 | Msa0903300:CDS | 55.0% |
| !! | AGTTTGATGGTGCAGCCAGC+GGG | + | chr6_2:406331-406350 | Msa0903300:CDS | 55.0% |
| GACCAGTGGAAACGCGAGAG+AGG | + | chr6_2:403725-403744 | Msa0903300:five_prime_UTR | 60.0% | |
| CACCTCTCTCGCGTTTCCAC+TGG | - | chr6_2:403730-403749 | None:intergenic | 60.0% | |
| CACGGGTATGGGACGGGTAA+CGG | + | chr6_2:403900-403919 | Msa0903300:intron | 60.0% | |
| ACGGGTATGGGACGGGTAAC+GGG | + | chr6_2:403901-403920 | Msa0903300:intron | 60.0% | |
| !! | GGGACGGGTAACGGGCATAT+AGG | + | chr6_2:403909-403928 | Msa0903300:intron | 60.0% |
| ATACCCGAACCCGTCGGGTA+CGG | + | chr6_2:404258-404277 | Msa0903300:intron | 60.0% | |
| AACTCCATCCCCGTACCCGA+CGG | - | chr6_2:404271-404290 | None:intergenic | 60.0% | |
| AGTAGGCATGACGATGGGGC+GGG | - | chr6_2:404382-404401 | None:intergenic | 60.0% | |
| AGTATAGCTCCGGCACCAGC+TGG | - | chr6_2:406366-406385 | None:intergenic | 60.0% | |
| ATGCGCGGACAGGGATGGAG+CGG | + | chr6_2:404233-404252 | Msa0903300:intron | 65.0% | |
| TACCCGAACCCGTCGGGTAC+GGG | + | chr6_2:404259-404278 | Msa0903300:intron | 65.0% | |
| ! | ATCCCCGTACCCGACGGGTT+CGG | - | chr6_2:404265-404284 | None:intergenic | 65.0% |
| ACTCCATCCCCGTACCCGAC+GGG | - | chr6_2:404270-404289 | None:intergenic | 65.0% | |
| GTAGGCATGACGATGGGGCG+GGG | - | chr6_2:404381-404400 | None:intergenic | 65.0% | |
| AATCCCGGACCAGCTGGTGC+CGG | + | chr6_2:406354-406373 | Msa0903300:CDS | 65.0% | |
| TGCGCGGACAGGGATGGAGC+GGG | + | chr6_2:404234-404253 | Msa0903300:intron | 70.0% | |
| GCGGGGATACCCGAACCCGT+CGG | + | chr6_2:404252-404271 | Msa0903300:intron | 70.0% | |
| CGGGGATACCCGAACCCGTC+GGG | + | chr6_2:404253-404272 | Msa0903300:intron | 70.0% | |
| ACCCGAACCCGTCGGGTACG+GGG | + | chr6_2:404260-404279 | Msa0903300:intron | 70.0% | |
| ! | TCCCCGTACCCGACGGGTTC+GGG | - | chr6_2:404264-404283 | None:intergenic | 70.0% |
| GAACCCGTCGGGTACGGGGA+TGG | + | chr6_2:404264-404283 | Msa0903300:intron | 70.0% | |
| GCATGACGATGGGGCGGGGT+GGG | - | chr6_2:404377-404396 | None:intergenic | 70.0% | |
| GGTGCAGCCAGCGGGAATCC+CGG | + | chr6_2:406339-406358 | Msa0903300:CDS | 70.0% | |
| AGCTGGTCCGGGATTCCCGC+TGG | - | chr6_2:406349-406368 | None:intergenic | 70.0% | |
| AGCGGGAATCCCGGACCAGC+TGG | + | chr6_2:406348-406367 | Msa0903300:CDS | 70.0% | |
| AGCTCCGGCACCAGCTGGTC+CGG | - | chr6_2:406361-406380 | None:intergenic | 70.0% | |
| GCGCGGACAGGGATGGAGCG+GGG | + | chr6_2:404235-404254 | Msa0903300:intron | 75.0% | |
| ACGATGGGGCGGGGTGGGAC+GGG | - | chr6_2:404372-404391 | None:intergenic | 75.0% | |
| GACGATGGGGCGGGGTGGGA+CGG | - | chr6_2:404373-404392 | None:intergenic | 75.0% | |
| GGCATGACGATGGGGCGGGG+TGG | - | chr6_2:404378-404397 | None:intergenic | 75.0% | |
| GCTCCGGCACCAGCTGGTCC+GGG | - | chr6_2:406360-406379 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 403668 | 407988 | 403668 | ID=Msa0903300;Name=Msa0903300 |
| chr6_2 | mRNA | 403668 | 407988 | 403668 | ID=Msa0903300-mRNA-1;Parent=Msa0903300;Name=Msa0903300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=79|0.8|1|1|0.8|0.83|6|248|109 |
| chr6_2 | exon | 403668 | 403746 | 403668 | ID=Msa0903300-mRNA-1:exon:212;Parent=Msa0903300-mRNA-1 |
| chr6_2 | exon | 404821 | 404865 | 404821 | ID=Msa0903300-mRNA-1:exon:213;Parent=Msa0903300-mRNA-1 |
| chr6_2 | exon | 406315 | 406407 | 406315 | ID=Msa0903300-mRNA-1:exon:214;Parent=Msa0903300-mRNA-1 |
| chr6_2 | exon | 406934 | 407041 | 406934 | ID=Msa0903300-mRNA-1:exon:215;Parent=Msa0903300-mRNA-1 |
| chr6_2 | exon | 407315 | 407366 | 407315 | ID=Msa0903300-mRNA-1:exon:216;Parent=Msa0903300-mRNA-1 |
| chr6_2 | exon | 407709 | 407988 | 407709 | ID=Msa0903300-mRNA-1:exon:217;Parent=Msa0903300-mRNA-1 |
| chr6_2 | five_prime_UTR | 403668 | 403746 | 403668 | ID=Msa0903300-mRNA-1:five_prime_utr;Parent=Msa0903300-mRNA-1 |
| chr6_2 | CDS | 404821 | 404865 | 404821 | ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1 |
| chr6_2 | CDS | 406315 | 406407 | 406315 | ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1 |
| chr6_2 | CDS | 406934 | 407041 | 406934 | ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1 |
| chr6_2 | CDS | 407315 | 407366 | 407315 | ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1 |
| chr6_2 | CDS | 407709 | 407740 | 407709 | ID=Msa0903300-mRNA-1:cds;Parent=Msa0903300-mRNA-1 |
| chr6_2 | three_prime_UTR | 407741 | 407988 | 407741 | ID=Msa0903300-mRNA-1:three_prime_utr;Parent=Msa0903300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
