Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0935710 | 0.830724 | 2.499504e-55 | -8.615850e-47 |
| Msa0028640 | Msa0935710 | 0.809950 | 1.468457e-50 | -8.615850e-47 |
| Msa0110970 | Msa0935710 | 0.817434 | 3.305079e-52 | -8.615850e-47 |
| Msa0657970 | Msa0935710 | 0.826419 | 2.740870e-54 | -8.615850e-47 |
| Msa0822870 | Msa0935710 | 0.818665 | 1.740854e-52 | -8.615850e-47 |
| Msa0140780 | Msa0935710 | 0.811093 | 8.317284e-51 | -8.615850e-47 |
| Msa0157290 | Msa0935710 | 0.830569 | 2.728068e-55 | -8.615850e-47 |
| Msa0200260 | Msa0935710 | 0.820363 | 7.137051e-53 | -8.615850e-47 |
| Msa0227470 | Msa0935710 | 0.804504 | 2.092758e-49 | -8.615850e-47 |
| Msa0452920 | Msa0935710 | 0.802101 | 6.583288e-49 | -8.615850e-47 |
| Msa0243100 | Msa0935710 | 0.837539 | 4.897923e-57 | -8.615850e-47 |
| Msa0244860 | Msa0935710 | 0.802214 | 6.237719e-49 | -8.615850e-47 |
| Msa0260610 | Msa0935710 | 0.807763 | 4.311837e-50 | -8.615850e-47 |
| Msa0260670 | Msa0935710 | 0.803633 | 3.176832e-49 | -8.615850e-47 |
| Msa0261340 | Msa0935710 | 0.809915 | 1.494411e-50 | -8.615850e-47 |
| Msa0283520 | Msa0935710 | 0.806955 | 6.397920e-50 | -8.615850e-47 |
| Msa0287650 | Msa0935710 | 0.821723 | 3.469108e-53 | -8.615850e-47 |
| Msa0332000 | Msa0935710 | 0.810371 | 1.191879e-50 | -8.615850e-47 |
| Msa0334500 | Msa0935710 | 0.806199 | 9.236966e-50 | -8.615850e-47 |
| Msa0507680 | Msa0935710 | 0.804072 | 2.574228e-49 | -8.615850e-47 |
| Msa0512900 | Msa0935710 | 0.802811 | 4.699050e-49 | -8.615850e-47 |
| Msa0869980 | Msa0935710 | 0.859536 | 3.866187e-63 | -8.615850e-47 |
| Msa0880140 | Msa0935710 | 0.830263 | 3.240455e-55 | -8.615850e-47 |
| Msa0903300 | Msa0935710 | 0.892609 | 1.355589e-74 | -8.615850e-47 |
| Msa0903690 | Msa0935710 | 0.807218 | 5.628570e-50 | -8.615850e-47 |
| Msa0935710 | Msa0972670 | 0.941153 | 6.822242e-101 | -8.615850e-47 |
| Msa0935710 | Msa1003750 | 0.806053 | 9.913307e-50 | -8.615850e-47 |
| Msa0935710 | Msa1079590 | 0.812889 | 3.377929e-51 | -8.615850e-47 |
| Msa0935710 | Msa1082500 | 0.801164 | 1.024533e-48 | -8.615850e-47 |
| Msa0935710 | Msa1151910 | 0.806077 | 9.799701e-50 | -8.615850e-47 |
| Msa0935710 | Msa1228190 | 0.802979 | 4.339099e-49 | -8.615850e-47 |
| Msa0935710 | Msa1238930 | 0.810377 | 1.188128e-50 | -8.615850e-47 |
| Msa0935710 | Msa1283860 | 0.811860 | 5.668697e-51 | -8.615850e-47 |
| Msa0935710 | Msa1322890 | 0.803783 | 2.957056e-49 | -8.615850e-47 |
| Msa0935710 | Msa1374550 | 0.807974 | 3.888383e-50 | -8.615850e-47 |
| Msa0935710 | Msa1409870 | 0.800450 | 1.432833e-48 | -8.615850e-47 |
| Msa0935710 | Msa1438250 | 0.816664 | 4.920509e-52 | -8.615850e-47 |
| Msa0935710 | Msa1460240 | 0.807262 | 5.506999e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935710 | MtrunA17_Chr6g0451421 | 46.099 | 141 | 28 | 1 | 14 | 106 | 5 | 145 | 9.49e-31 | 106 |
| Msa0935710 | MtrunA17_Chr6g0451411 | 42.143 | 140 | 33 | 1 | 16 | 107 | 175 | 314 | 2.54e-28 | 104 |
| Msa0935710 | MtrunA17_Chr2g0325301 | 39.706 | 136 | 34 | 1 | 17 | 104 | 10 | 145 | 3.33e-26 | 95.1 |
| Msa0935710 | MtrunA17_Chr2g0329701 | 38.406 | 138 | 37 | 1 | 17 | 106 | 234 | 371 | 1.57e-23 | 92.8 |
| Msa0935710 | MtrunA17_Chr6g0451451 | 66.667 | 63 | 21 | 0 | 47 | 109 | 25 | 87 | 4.34e-23 | 85.1 |
| Msa0935710 | MtrunA17_Chr7g0264421 | 37.681 | 138 | 38 | 1 | 17 | 106 | 204 | 341 | 1.18e-22 | 89.7 |
| Msa0935710 | MtrunA17_Chr6g0451441 | 38.667 | 150 | 36 | 2 | 16 | 109 | 319 | 468 | 6.31e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935710 | AT3G01410.2 | 36.029 | 136 | 39 | 1 | 17 | 104 | 154 | 289 | 2.30e-21 | 86.3 |
| Msa0935710 | AT3G01410.1 | 36.029 | 136 | 39 | 1 | 17 | 104 | 154 | 289 | 2.30e-21 | 86.3 |
Find 43 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACAGTTGAAAGGTTTA+TGG | 0.191806 | 6_3:+6331951 | Msa0935710:intron |
| GCTATACTGCGTACTGAAAA+TGG | 0.195325 | 6_3:+6331412 | Msa0935710:CDS |
| ACATCAACAATGCTTATTTA+AGG | 0.208439 | 6_3:+6331975 | Msa0935710:CDS |
| TCTTGTATCCTTGAGTTTGA+TGG | 0.246738 | 6_3:+6331352 | Msa0935710:CDS |
| ATGCCCACTATTAGCAGTTT+AGG | 0.253049 | 6_3:+6332932 | Msa0935710:three_prime_UTR |
| AGTACTTCAGTTTAGCAAAT+TGG | 0.284439 | 6_3:+6332830 | Msa0935710:three_prime_UTR |
| GCAAATCGGGCCATCTTTCT+TGG | 0.285264 | 6_3:+6332367 | Msa0935710:CDS |
| TGCCCACTATTAGCAGTTTA+GGG | 0.295761 | 6_3:+6332933 | Msa0935710:three_prime_UTR |
| AGCTCCGGCACCAGCTGGTC+CGG | 0.304765 | 6_3:-6331392 | None:intergenic |
| GAACTTATGCAATGAGGCTT+TGG | 0.369368 | 6_3:+6331997 | Msa0935710:CDS |
| AGTCCCTAAACTGCTAATAG+TGG | 0.428944 | 6_3:-6332936 | None:intergenic |
| AAACACATTAGAGCTGGAAT+TGG | 0.429007 | 6_3:+6329177 | Msa0935710:five_prime_UTR |
| AGCTGATGCTCAAGCAAATC+GGG | 0.429319 | 6_3:+6332354 | Msa0935710:CDS |
| AAGCTGATGCTCAAGCAAAT+CGG | 0.432683 | 6_3:+6332353 | Msa0935710:CDS |
| CACCTCTCTCGCGTTTCCAC+TGG | 0.442851 | 6_3:-6329230 | None:intergenic |
| AGCTGGTCCGGGATTCCCGC+TGG | 0.458523 | 6_3:-6331380 | None:intergenic |
| ATAGTGGGCATCTACACATT+AGG | 0.460561 | 6_3:-6332920 | None:intergenic |
| GCAATGAGGCTTTGGAGCTA+AGG | 0.469965 | 6_3:+6332005 | Msa0935710:CDS |
| CTATACTGCGTACTGAAAAT+GGG | 0.472624 | 6_3:+6331413 | Msa0935710:CDS |
| GGTGCAGCCAGCGGGAATCC+CGG | 0.474643 | 6_3:+6331373 | Msa0935710:CDS |
| GCGTACTGAAAATGGGAGTC+TGG | 0.474898 | 6_3:+6331420 | Msa0935710:CDS |
| CACATTAGAGCTGGAATTGG+AGG | 0.482187 | 6_3:+6329180 | Msa0935710:five_prime_UTR |
| TTCAGTACGCAGTATAGCTC+CGG | 0.494280 | 6_3:-6331407 | None:intergenic |
| TGGTGGTTTCACATGTGAAC+TGG | 0.504020 | 6_3:+6332850 | Msa0935710:three_prime_UTR |
| GCTCCGGCACCAGCTGGTCC+GGG | 0.509262 | 6_3:-6331391 | None:intergenic |
| CAATGAGGCTTTGGAGCTAA+GGG | 0.513996 | 6_3:+6332006 | Msa0935710:CDS |
| AGTATAGCTCCGGCACCAGC+TGG | 0.523879 | 6_3:-6331397 | None:intergenic |
| AATCGGGCCATCTTTCTTGG+AGG | 0.525253 | 6_3:+6332370 | Msa0935710:CDS |
| ACTTCAGTTTAGCAAATTGG+TGG | 0.529105 | 6_3:+6332833 | Msa0935710:three_prime_UTR |
| AATCCCGGACCAGCTGGTGC+CGG | 0.539704 | 6_3:+6331388 | Msa0935710:CDS |
| AGTTTGATGGTGCAGCCAGC+GGG | 0.541634 | 6_3:+6331365 | Msa0935710:CDS |
| TCTAACAAACACATTAGAGC+TGG | 0.541796 | 6_3:+6329171 | Msa0935710:five_prime_UTR |
| GGTCTAACCTCCAAGAAAGA+TGG | 0.555833 | 6_3:-6332377 | None:intergenic |
| TTTAAGGAACTTATGCAATG+AGG | 0.557886 | 6_3:+6331991 | Msa0935710:CDS |
| GTCCCTAAACTGCTAATAGT+GGG | 0.566813 | 6_3:-6332935 | None:intergenic |
| CATGTGAACTGGCATGTCAA+AGG | 0.585422 | 6_3:+6332861 | Msa0935710:three_prime_UTR |
| GAGTTTGATGGTGCAGCCAG+CGG | 0.600495 | 6_3:+6331364 | Msa0935710:CDS |
| CACCAGTGGAAACGCGAGAG+AGG | 0.607742 | 6_3:+6329228 | Msa0935710:five_prime_UTR |
| TGGCTGCACCATCAAACTCA+AGG | 0.610487 | 6_3:-6331360 | None:intergenic |
| GTGGTATTGCAATCGTAGAG+AGG | 0.645749 | 6_3:+6330340 | Msa0935710:CDS |
| AGAGAGAGAAATCACACCAG+TGG | 0.648359 | 6_3:+6329214 | Msa0935710:five_prime_UTR |
| CTTGTCCAGATGCATCGTTG+TGG | 0.664152 | 6_3:+6330321 | Msa0935710:intron |
| ATGAATTAACGATCATCCGA+CGG | 0.680586 | 6_3:+6332757 | Msa0935710:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAATTATTCAATG+CGG | + | chr6_3:6329715-6329734 | Msa0935710:intron | 10.0% |
| !!! | CTTAATTTAATTTATCTATA+AGG | + | chr6_3:6331060-6331079 | Msa0935710:intron | 10.0% |
| !!! | AAAAAATAATTTTCTGCATT+CGG | - | chr6_3:6329468-6329487 | None:intergenic | 15.0% |
| !!! | AATAAAAAACAGAAGTTTTT+TGG | - | chr6_3:6329698-6329717 | None:intergenic | 15.0% |
| !! | TTAAAAAAATTATTCAATGC+GGG | + | chr6_3:6329716-6329735 | Msa0935710:intron | 15.0% |
| !!! | TTAATTTATTGCATTTTAGT+TGG | + | chr6_3:6330231-6330250 | Msa0935710:intron | 15.0% |
| !!! | TAATTTATTGCATTTTAGTT+GGG | + | chr6_3:6330232-6330251 | Msa0935710:intron | 15.0% |
| !! | TATAAATTGTTGAAAAATCT+TGG | + | chr6_3:6330408-6330427 | Msa0935710:intron | 15.0% |
| !! | ACAAAAAAACCTGTTAAATT+GGG | - | chr6_3:6329336-6329355 | None:intergenic | 20.0% |
| !! | AACAAAAAAACCTGTTAAAT+TGG | - | chr6_3:6329337-6329356 | None:intergenic | 20.0% |
| !!! | AAAAATAATTTTCTGCATTC+GGG | - | chr6_3:6329467-6329486 | None:intergenic | 20.0% |
| !! | TAAAAAAATTATTCAATGCG+GGG | + | chr6_3:6329717-6329736 | Msa0935710:intron | 20.0% |
| !! | TTAAATGCATAATATATGCA+AGG | + | chr6_3:6330481-6330500 | Msa0935710:intron | 20.0% |
| !! | TATATTGCACTAATAATTGA+AGG | - | chr6_3:6330893-6330912 | None:intergenic | 20.0% |
| !! | TTATTAGTGCAATATATAGT+TGG | + | chr6_3:6330897-6330916 | Msa0935710:intron | 20.0% |
| !! | CTTTATATAGGATTTCAATT+TGG | - | chr6_3:6331005-6331024 | None:intergenic | 20.0% |
| !! | TGACTGTTAAAACTTTATAT+AGG | - | chr6_3:6331017-6331036 | None:intergenic | 20.0% |
| !!! | TTATATGTTGTTTAGCTTTA+TGG | + | chr6_3:6331680-6331699 | Msa0935710:intron | 20.0% |
| !! | TTGTTCATAAAAAAGATACA+TGG | + | chr6_3:6331716-6331735 | Msa0935710:intron | 20.0% |
| !! | TTCTTTGTTAAAAACAACTA+TGG | + | chr6_3:6331769-6331788 | Msa0935710:intron | 20.0% |
| !! | ATGAAACTAAATGAATTCAA+AGG | - | chr6_3:6331826-6331845 | None:intergenic | 20.0% |
| !! | AAAACAATTAGATTGGAATT+TGG | + | chr6_3:6332140-6332159 | Msa0935710:intron | 20.0% |
| !! | AAACAATTAGATTGGAATTT+GGG | + | chr6_3:6332141-6332160 | Msa0935710:intron | 20.0% |
| !!! | TTTTACTGTCAAAATACAAA+TGG | + | chr6_3:6332215-6332234 | Msa0935710:intron | 20.0% |
| !!! | TGTTCTTTTGAAAATGTTTA+AGG | + | chr6_3:6332318-6332337 | Msa0935710:intron | 20.0% |
| !! | GTTCAAAAGAATTATCTAAA+TGG | - | chr6_3:6332660-6332679 | None:intergenic | 20.0% |
| !!! | ATCTTATACTTTTTTGTAGA+CGG | + | chr6_3:6332715-6332734 | Msa0935710:intron | 20.0% |
| !!! | ACAGGTTTTTTTGTTTTGAT+TGG | + | chr6_3:6329342-6329361 | Msa0935710:intron | 25.0% |
| !!! | CAGGTTTTTTTGTTTTGATT+GGG | + | chr6_3:6329343-6329362 | Msa0935710:intron | 25.0% |
| !!! | TTTTTTGTTTTGATTGGGTT+TGG | + | chr6_3:6329348-6329367 | Msa0935710:intron | 25.0% |
| !!! | TTTTTGTTTTGATTGGGTTT+GGG | + | chr6_3:6329349-6329368 | Msa0935710:intron | 25.0% |
| ! | AAAGAAGCAACTAAATCAAT+CGG | + | chr6_3:6329569-6329588 | Msa0935710:intron | 25.0% |
| !!! | TGTTTTTTGAAGAAGCTAAA+CGG | + | chr6_3:6329601-6329620 | Msa0935710:intron | 25.0% |
| ! | TAATGCATTAACATTTCTCT+AGG | + | chr6_3:6329667-6329686 | Msa0935710:intron | 25.0% |
| ! | AATGCATTAACATTTCTCTA+GGG | + | chr6_3:6329668-6329687 | Msa0935710:intron | 25.0% |
| ! | GTTATGTAAAAAATAGCAGT+AGG | - | chr6_3:6329900-6329919 | None:intergenic | 25.0% |
| ! | TTTATCTTGCTAAGTAGAAT+CGG | - | chr6_3:6329948-6329967 | None:intergenic | 25.0% |
| ! | AATGCAATGCTATTAACATA+TGG | + | chr6_3:6330000-6330019 | Msa0935710:intron | 25.0% |
| !! | AGTTTAAAACTAGTTGAAAG+AGG | + | chr6_3:6330098-6330117 | Msa0935710:intron | 25.0% |
| ! | ATAGGTTGTTACATTCTTTA+CGG | + | chr6_3:6330270-6330289 | Msa0935710:intron | 25.0% |
| !! | TATAAAATAAACCGACTTAC+TGG | - | chr6_3:6330375-6330394 | None:intergenic | 25.0% |
| !! | AAAAAACATTTTGAGCATGA+AGG | - | chr6_3:6330453-6330472 | None:intergenic | 25.0% |
| ! | TACGATTTAGAAAATCACAA+TGG | + | chr6_3:6330564-6330583 | Msa0935710:intron | 25.0% |
| ! | TTGTATAAGCTTATTATGTC+TGG | - | chr6_3:6330622-6330641 | None:intergenic | 25.0% |
| ! | AGAAAACTTAAGTATAGTGT+AGG | + | chr6_3:6330965-6330984 | Msa0935710:intron | 25.0% |
| ! | CAAAAACTGAATAGTTTCTT+TGG | + | chr6_3:6331136-6331155 | Msa0935710:intron | 25.0% |
| ! | TGAAATCTTCTGTATAGTTT+AGG | + | chr6_3:6331203-6331222 | Msa0935710:intron | 25.0% |
| ! | AATATCTAACCAATTAGGAA+AGG | - | chr6_3:6331851-6331870 | None:intergenic | 25.0% |
| ! | TTGACAATATCTAACCAATT+AGG | - | chr6_3:6331856-6331875 | None:intergenic | 25.0% |
| ! | TGCAAAACAATAACATATGT+TGG | - | chr6_3:6331935-6331954 | None:intergenic | 25.0% |
| ! | ACATCAACAATGCTTATTTA+AGG | + | chr6_3:6331975-6331994 | Msa0935710:CDS | 25.0% |
| ! | AATTGCTAAATATATACCCT+AGG | - | chr6_3:6332064-6332083 | None:intergenic | 25.0% |
| ! | GAAGTTGAAAACAATTAGAT+TGG | + | chr6_3:6332133-6332152 | Msa0935710:intron | 25.0% |
| !! | CATTTTCAAAAGAACAAACA+CGG | - | chr6_3:6332314-6332333 | None:intergenic | 25.0% |
| !! | TTGAACATTTGAAACCTATA+GGG | - | chr6_3:6332420-6332439 | None:intergenic | 25.0% |
| !! | ATTGAACATTTGAAACCTAT+AGG | - | chr6_3:6332421-6332440 | None:intergenic | 25.0% |
| !!! | AGATTCATTTTTCGTTTCAA+AGG | - | chr6_3:6332514-6332533 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTAAAGCAACTT+TGG | - | chr6_3:6332591-6332610 | None:intergenic | 25.0% |
| CTTTGTATATTCTTCAGCTT+AGG | + | chr6_3:6329268-6329287 | Msa0935710:intron | 30.0% | |
| TACAACAAAACTCATACATG+TGG | + | chr6_3:6329293-6329312 | Msa0935710:intron | 30.0% | |
| AAAACTCATACATGTGGTTA+CGG | + | chr6_3:6329299-6329318 | Msa0935710:intron | 30.0% | |
| AAAACCTGTTAAATTGGGTT+TGG | - | chr6_3:6329331-6329350 | None:intergenic | 30.0% | |
| ATGCATTAACATTTCTCTAG+GGG | + | chr6_3:6329669-6329688 | Msa0935710:intron | 30.0% | |
| ! | CTCAACTAATTTGAGTTAGT+TGG | + | chr6_3:6330068-6330087 | Msa0935710:intron | 30.0% |
| ! | AACTAATTTGAGTTAGTTGG+AGG | + | chr6_3:6330071-6330090 | Msa0935710:intron | 30.0% |
| GGGATGTTAATTCTATACAT+AGG | + | chr6_3:6330252-6330271 | Msa0935710:intron | 30.0% | |
| GGAATTATAATCCAGTAAGT+CGG | + | chr6_3:6330361-6330380 | Msa0935710:intron | 30.0% | |
| AGTATGTATAGCCATATGTT+AGG | + | chr6_3:6330677-6330696 | Msa0935710:intron | 30.0% | |
| AAAGCTTCATATCAATTGCT+TGG | + | chr6_3:6330928-6330947 | Msa0935710:intron | 30.0% | |
| ATATAGGATTTCAATTTGGC+AGG | - | chr6_3:6331001-6331020 | None:intergenic | 30.0% | |
| TAGTAATCAAGCAATTCATG+TGG | - | chr6_3:6331176-6331195 | None:intergenic | 30.0% | |
| ! | CTTTACTGAGGATTTTCATT+TGG | - | chr6_3:6331243-6331262 | None:intergenic | 30.0% |
| TGATTGTCAAAACTTTACTG+AGG | - | chr6_3:6331255-6331274 | None:intergenic | 30.0% | |
| ACTTTGTGCAACAATTCATT+TGG | + | chr6_3:6331448-6331467 | Msa0935710:intron | 30.0% | |
| GTTTCATATCCTTTCCTAAT+TGG | + | chr6_3:6331839-6331858 | Msa0935710:intron | 30.0% | |
| !! | ATTGTTTTGCAACAGTTGAA+AGG | + | chr6_3:6331944-6331963 | Msa0935710:intron | 30.0% |
| TTTAAGGAACTTATGCAATG+AGG | + | chr6_3:6331991-6332010 | Msa0935710:CDS | 30.0% | |
| AAACCAAACAAAAAGCAAAG+AGG | - | chr6_3:6332616-6332635 | None:intergenic | 30.0% | |
| AGTACTTCAGTTTAGCAAAT+TGG | + | chr6_3:6332830-6332849 | Msa0935710:three_prime_UTR | 30.0% | |
| TCTAACAAACACATTAGAGC+TGG | + | chr6_3:6329171-6329190 | Msa0935710:five_prime_UTR | 35.0% | |
| AAACACATTAGAGCTGGAAT+TGG | + | chr6_3:6329177-6329196 | Msa0935710:five_prime_UTR | 35.0% | |
| ! | TGTTAAATTGGGTTTGGTTC+GGG | - | chr6_3:6329325-6329344 | None:intergenic | 35.0% |
| ! | CTGTTAAATTGGGTTTGGTT+CGG | - | chr6_3:6329326-6329345 | None:intergenic | 35.0% |
| ! | TTTTCCGCGATTTCAAAACA+CGG | + | chr6_3:6329384-6329403 | Msa0935710:intron | 35.0% |
| ! | ATAATTTTCTGCATTCGGGA+CGG | - | chr6_3:6329463-6329482 | None:intergenic | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | + | chr6_3:6330486-6330505 | Msa0935710:intron | 35.0% | |
| TTGTAGTTTCTGCAAAAGCA+TGG | - | chr6_3:6330540-6330559 | None:intergenic | 35.0% | |
| TATAGCCATATGTTAGGTTC+TGG | + | chr6_3:6330683-6330702 | Msa0935710:intron | 35.0% | |
| ! | ACTGAGGATTTTCATTTGGT+AGG | - | chr6_3:6331239-6331258 | None:intergenic | 35.0% |
| TCTTGTATCCTTGAGTTTGA+TGG | + | chr6_3:6331352-6331371 | Msa0935710:CDS | 35.0% | |
| CTATACTGCGTACTGAAAAT+GGG | + | chr6_3:6331413-6331432 | Msa0935710:CDS | 35.0% | |
| AAGCTGTAAGGAAAGGATAT+AGG | + | chr6_3:6331605-6331624 | Msa0935710:intron | 35.0% | |
| TATAGGAACATCACTGTCTA+CGG | + | chr6_3:6331622-6331641 | Msa0935710:intron | 35.0% | |
| ! | GACCTGATTGATAACAAGTT+CGG | - | chr6_3:6331653-6331672 | None:intergenic | 35.0% |
| ATGAATTCAAAGGAGCCTTT+CGG | - | chr6_3:6331816-6331835 | None:intergenic | 35.0% | |
| TGCAACAGTTGAAAGGTTTA+TGG | + | chr6_3:6331951-6331970 | Msa0935710:intron | 35.0% | |
| ! | TCAGCATCTTTTACATTCCT+AGG | + | chr6_3:6332044-6332063 | Msa0935710:CDS | 35.0% |
| ! | CAGCATCTTTTACATTCCTA+GGG | + | chr6_3:6332045-6332064 | Msa0935710:CDS | 35.0% |
| ! | ACGGTATTTGTTAACTGTTG+AGG | - | chr6_3:6332295-6332314 | None:intergenic | 35.0% |
| CATTGCAGTTCTTGTTCATT+AGG | - | chr6_3:6332454-6332473 | None:intergenic | 35.0% | |
| AAATGGTTTCAAAGCAGCTT+TGG | - | chr6_3:6332485-6332504 | None:intergenic | 35.0% | |
| CGTTTCAAAGGATGCTTAAA+TGG | - | chr6_3:6332502-6332521 | None:intergenic | 35.0% | |
| ! | GTGCAGAGTTCTGATATATT+AGG | - | chr6_3:6332558-6332577 | None:intergenic | 35.0% |
| ! | CAAAAAGCAAAGAGGCTTTT+TGG | - | chr6_3:6332608-6332627 | None:intergenic | 35.0% |
| !!! | AAGCCTCTTTGCTTTTTGTT+TGG | + | chr6_3:6332610-6332629 | Msa0935710:intron | 35.0% |
| ATGAATTAACGATCATCCGA+CGG | + | chr6_3:6332757-6332776 | Msa0935710:exon | 35.0% | |
| ATGCCACTGTCAAAAACTAT+TGG | + | chr6_3:6332781-6332800 | Msa0935710:three_prime_UTR | 35.0% | |
| ! | TTGCCAATAGTTTTTGACAG+TGG | - | chr6_3:6332787-6332806 | None:intergenic | 35.0% |
| ACTTCAGTTTAGCAAATTGG+TGG | + | chr6_3:6332833-6332852 | Msa0935710:three_prime_UTR | 35.0% | |
| CGAACCAAACCCAATTTAAC+AGG | + | chr6_3:6329324-6329343 | Msa0935710:intron | 40.0% | |
| ATTGGGTTTGGGTATGAGTT+TGG | + | chr6_3:6329360-6329379 | Msa0935710:intron | 40.0% | |
| TTTCCGCGATTTCAAAACAC+GGG | + | chr6_3:6329385-6329404 | Msa0935710:intron | 40.0% | |
| !!! | ATACCCGTGTTTTGAAATCG+CGG | - | chr6_3:6329391-6329410 | None:intergenic | 40.0% |
| CGATTTCAAAACACGGGTAT+GGG | + | chr6_3:6329391-6329410 | Msa0935710:intron | 40.0% | |
| ! | TAATTTTCTGCATTCGGGAC+GGG | - | chr6_3:6329462-6329481 | None:intergenic | 40.0% |
| AAATTATTCAATGCGGGGAC+AGG | + | chr6_3:6329722-6329741 | Msa0935710:intron | 40.0% | |
| AATTATTCAATGCGGGGACA+GGG | + | chr6_3:6329723-6329742 | Msa0935710:intron | 40.0% | |
| GTTCAATTTATCATCCCCGT+TGG | + | chr6_3:6329787-6329806 | Msa0935710:intron | 40.0% | |
| ! | TTTATCATCCCCGTTGGTTA+TGG | + | chr6_3:6329793-6329812 | Msa0935710:intron | 40.0% |
| ! | TTATCATCCCCGTTGGTTAT+GGG | + | chr6_3:6329794-6329813 | Msa0935710:intron | 40.0% |
| ACGGGTAAGTATACGAGAAT+CGG | + | chr6_3:6329824-6329843 | Msa0935710:intron | 40.0% | |
| AAGTATACGAGAATCGGGTA+TGG | + | chr6_3:6329830-6329849 | Msa0935710:intron | 40.0% | |
| AGTATACGAGAATCGGGTAT+GGG | + | chr6_3:6329831-6329850 | Msa0935710:intron | 40.0% | |
| ATAGCAGTAGGCATGACAAT+GGG | - | chr6_3:6329888-6329907 | None:intergenic | 40.0% | |
| AATAGCAGTAGGCATGACAA+TGG | - | chr6_3:6329889-6329908 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr6_3:6330487-6330506 | Msa0935710:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr6_3:6330488-6330507 | Msa0935710:intron | 40.0% | |
| ! | TAGTTTCTGCAAAAGCATGG+TGG | - | chr6_3:6330537-6330556 | None:intergenic | 40.0% |
| CTAGTCCAGAACCTAACATA+TGG | - | chr6_3:6330691-6330710 | None:intergenic | 40.0% | |
| !! | CATATGTTAGGTTCTGGACT+AGG | + | chr6_3:6330689-6330708 | Msa0935710:intron | 40.0% |
| GCTATACTGCGTACTGAAAA+TGG | + | chr6_3:6331412-6331431 | Msa0935710:CDS | 40.0% | |
| ! | TTTGATAACCAAGTCCTTCG+CGG | - | chr6_3:6331540-6331559 | None:intergenic | 40.0% |
| !!! | GAGTATCGCGCATTGATTTT+AGG | + | chr6_3:6331574-6331593 | Msa0935710:intron | 40.0% |
| TAGGACTGAAACAAGCTGTA+AGG | + | chr6_3:6331593-6331612 | Msa0935710:intron | 40.0% | |
| CTGAAACAAGCTGTAAGGAA+AGG | + | chr6_3:6331598-6331617 | Msa0935710:intron | 40.0% | |
| !! | CTCCGAACTTGTTATCAATC+AGG | + | chr6_3:6331648-6331667 | Msa0935710:intron | 40.0% |
| !!! | CCTTTCGGTTTTTTGGGAAA+GGG | - | chr6_3:6331801-6331820 | None:intergenic | 40.0% |
| !!! | AAGGAGCCTTTCGGTTTTTT+GGG | - | chr6_3:6331807-6331826 | None:intergenic | 40.0% |
| !!! | AAAGGAGCCTTTCGGTTTTT+TGG | - | chr6_3:6331808-6331827 | None:intergenic | 40.0% |
| GAACTTATGCAATGAGGCTT+TGG | + | chr6_3:6331997-6332016 | Msa0935710:CDS | 40.0% | |
| AAGCTGATGCTCAAGCAAAT+CGG | + | chr6_3:6332353-6332372 | Msa0935710:CDS | 40.0% | |
| AGGGACTACGAAAAGTCTTA+AGG | - | chr6_3:6332401-6332420 | None:intergenic | 40.0% | |
| ! | AGACTTTTCGTAGTCCCTAT+AGG | + | chr6_3:6332403-6332422 | Msa0935710:intron | 40.0% |
| !! | ATAGTGGGCATCTACACATT+AGG | - | chr6_3:6332923-6332942 | None:intergenic | 40.0% |
| ATGCCCACTATTAGCAGTTT+AGG | + | chr6_3:6332932-6332951 | Msa0935710:three_prime_UTR | 40.0% | |
| TGCCCACTATTAGCAGTTTA+GGG | + | chr6_3:6332933-6332952 | Msa0935710:three_prime_UTR | 40.0% | |
| GTCCCTAAACTGCTAATAGT+GGG | - | chr6_3:6332938-6332957 | None:intergenic | 40.0% | |
| AGTCCCTAAACTGCTAATAG+TGG | - | chr6_3:6332939-6332958 | None:intergenic | 40.0% | |
| CACATTAGAGCTGGAATTGG+AGG | + | chr6_3:6329180-6329199 | Msa0935710:five_prime_UTR | 45.0% | |
| AGAGAGAGAAATCACACCAG+TGG | + | chr6_3:6329214-6329233 | Msa0935710:five_prime_UTR | 45.0% | |
| GCGATTTCAAAACACGGGTA+TGG | + | chr6_3:6329390-6329409 | Msa0935710:intron | 45.0% | |
| TTCAAAACACGGGTATGGGA+CGG | + | chr6_3:6329395-6329414 | Msa0935710:intron | 45.0% | |
| TTTGGGTATGAGTTCAGGGT+GGG | - | chr6_3:6329439-6329458 | None:intergenic | 45.0% | |
| TTACCCTACCCATAACCAAC+GGG | - | chr6_3:6329805-6329824 | None:intergenic | 45.0% | |
| GTTACCCTACCCATAACCAA+CGG | - | chr6_3:6329806-6329825 | None:intergenic | 45.0% | |
| GTTGGTTATGGGTAGGGTAA+CGG | + | chr6_3:6329805-6329824 | Msa0935710:intron | 45.0% | |
| TTGGTTATGGGTAGGGTAAC+GGG | + | chr6_3:6329806-6329825 | Msa0935710:intron | 45.0% | |
| CGGGTAAGTATACGAGAATC+GGG | + | chr6_3:6329825-6329844 | Msa0935710:intron | 45.0% | |
| GTATACGAGAATCGGGTATG+GGG | + | chr6_3:6329832-6329851 | Msa0935710:intron | 45.0% | |
| TAGCAGTAGGCATGACAATG+GGG | - | chr6_3:6329887-6329906 | None:intergenic | 45.0% | |
| CAATACCACAACGATGCATC+TGG | - | chr6_3:6330329-6330348 | None:intergenic | 45.0% | |
| GTGGTATTGCAATCGTAGAG+AGG | + | chr6_3:6330340-6330359 | Msa0935710:CDS | 45.0% | |
| GTGATTCTGAGTTTGAACCC+CGG | - | chr6_3:6330508-6330527 | None:intergenic | 45.0% | |
| !! | TGTTAGGTTCTGGACTAGGT+AGG | + | chr6_3:6330693-6330712 | Msa0935710:intron | 45.0% |
| CAAGCAATTCATGTGGAGCT+TGG | - | chr6_3:6331169-6331188 | None:intergenic | 45.0% | |
| TTCAGTACGCAGTATAGCTC+CGG | - | chr6_3:6331410-6331429 | None:intergenic | 45.0% | |
| CCCTTTCCCAAAAAACCGAA+AGG | + | chr6_3:6331798-6331817 | Msa0935710:intron | 45.0% | |
| !!! | GCCTTTCGGTTTTTTGGGAA+AGG | - | chr6_3:6331802-6331821 | None:intergenic | 45.0% |
| !! | CAATGAGGCTTTGGAGCTAA+GGG | + | chr6_3:6332006-6332025 | Msa0935710:CDS | 45.0% |
| GCAGTGCTCAATTGAGAAAG+AGG | - | chr6_3:6332108-6332127 | None:intergenic | 45.0% | |
| AGCTGATGCTCAAGCAAATC+GGG | + | chr6_3:6332354-6332373 | Msa0935710:CDS | 45.0% | |
| GGTCTAACCTCCAAGAAAGA+TGG | - | chr6_3:6332380-6332399 | None:intergenic | 45.0% | |
| TGGTGGTTTCACATGTGAAC+TGG | + | chr6_3:6332850-6332869 | Msa0935710:three_prime_UTR | 45.0% | |
| CATGTGAACTGGCATGTCAA+AGG | + | chr6_3:6332861-6332880 | Msa0935710:three_prime_UTR | 45.0% | |
| TCAAAACACGGGTATGGGAC+GGG | + | chr6_3:6329396-6329415 | Msa0935710:intron | 50.0% | |
| GTTTGGGTATGAGTTCAGGG+TGG | - | chr6_3:6329440-6329459 | None:intergenic | 50.0% | |
| CGGGTTTGGGTATGAGTTCA+GGG | - | chr6_3:6329443-6329462 | None:intergenic | 50.0% | |
| ACGGGTTTGGGTATGAGTTC+AGG | - | chr6_3:6329444-6329463 | None:intergenic | 50.0% | |
| ! | ATCCCCGTTGGTTATGGGTA+GGG | + | chr6_3:6329799-6329818 | Msa0935710:intron | 50.0% |
| TACCCTACCCATAACCAACG+GGG | - | chr6_3:6329804-6329823 | None:intergenic | 50.0% | |
| CTTGTCCAGATGCATCGTTG+TGG | + | chr6_3:6330321-6330340 | Msa0935710:intron | 50.0% | |
| TGGCTGCACCATCAAACTCA+AGG | - | chr6_3:6331363-6331382 | None:intergenic | 50.0% | |
| GCGTACTGAAAATGGGAGTC+TGG | + | chr6_3:6331420-6331439 | Msa0935710:CDS | 50.0% | |
| !! | TAGCTCTATCGATTCCGCGA+AGG | + | chr6_3:6331523-6331542 | Msa0935710:intron | 50.0% |
| !! | TATCGATTCCGCGAAGGACT+TGG | + | chr6_3:6331529-6331548 | Msa0935710:intron | 50.0% |
| !! | GCAATGAGGCTTTGGAGCTA+AGG | + | chr6_3:6332005-6332024 | Msa0935710:CDS | 50.0% |
| GCAAATCGGGCCATCTTTCT+TGG | + | chr6_3:6332367-6332386 | Msa0935710:CDS | 50.0% | |
| AATCGGGCCATCTTTCTTGG+AGG | + | chr6_3:6332370-6332389 | Msa0935710:CDS | 50.0% | |
| ! | TTTTGACAGTGGCATGCCGT+CGG | - | chr6_3:6332776-6332795 | None:intergenic | 50.0% |
| ! | TCTGCATTCGGGACGGGTTT+GGG | - | chr6_3:6329456-6329475 | None:intergenic | 55.0% |
| ! | TTCTGCATTCGGGACGGGTT+TGG | - | chr6_3:6329457-6329476 | None:intergenic | 55.0% |
| ATTCAATGCGGGGACAGGGA+TGG | + | chr6_3:6329727-6329746 | Msa0935710:intron | 55.0% | |
| AACTTCATCCCCATCCCCGA+CGG | - | chr6_3:6329770-6329789 | None:intergenic | 55.0% | |
| ! | CATCCCCGTTGGTTATGGGT+AGG | + | chr6_3:6329798-6329817 | Msa0935710:intron | 55.0% |
| ACGAGAATCGGGTATGGGGA+CGG | + | chr6_3:6329836-6329855 | Msa0935710:intron | 55.0% | |
| AGTAGGCATGACAATGGGGC+GGG | - | chr6_3:6329883-6329902 | None:intergenic | 55.0% | |
| CAGTAGGCATGACAATGGGG+CGG | - | chr6_3:6329884-6329903 | None:intergenic | 55.0% | |
| !! | GAGTTTGATGGTGCAGCCAG+CGG | + | chr6_3:6331364-6331383 | Msa0935710:CDS | 55.0% |
| !! | AGTTTGATGGTGCAGCCAGC+GGG | + | chr6_3:6331365-6331384 | Msa0935710:CDS | 55.0% |
| CACCAGTGGAAACGCGAGAG+AGG | + | chr6_3:6329228-6329247 | Msa0935710:five_prime_UTR | 60.0% | |
| CACCTCTCTCGCGTTTCCAC+TGG | - | chr6_3:6329233-6329252 | None:intergenic | 60.0% | |
| CACGGGTATGGGACGGGTAA+CGG | + | chr6_3:6329402-6329421 | Msa0935710:intron | 60.0% | |
| ACGGGTATGGGACGGGTAAC+GGG | + | chr6_3:6329403-6329422 | Msa0935710:intron | 60.0% | |
| ACTTCATCCCCATCCCCGAC+GGG | - | chr6_3:6329769-6329788 | None:intergenic | 60.0% | |
| CGAGAATCGGGTATGGGGAC+GGG | + | chr6_3:6329837-6329856 | Msa0935710:intron | 60.0% | |
| GAGAATCGGGTATGGGGACG+GGG | + | chr6_3:6329838-6329857 | Msa0935710:intron | 60.0% | |
| CATGACAATGGGGCGGGATG+GGG | - | chr6_3:6329877-6329896 | None:intergenic | 60.0% | |
| GCATGACAATGGGGCGGGAT+GGG | - | chr6_3:6329878-6329897 | None:intergenic | 60.0% | |
| AGTATAGCTCCGGCACCAGC+TGG | - | chr6_3:6331400-6331419 | None:intergenic | 60.0% | |
| ATGCGGGGACAGGGATGGAG+CGG | + | chr6_3:6329732-6329751 | Msa0935710:intron | 65.0% | |
| ATACCCGAACCCGTCGGGGA+TGG | + | chr6_3:6329757-6329776 | Msa0935710:intron | 65.0% | |
| TACCCGAACCCGTCGGGGAT+GGG | + | chr6_3:6329758-6329777 | Msa0935710:intron | 65.0% | |
| ! | ATCCCCATCCCCGACGGGTT+CGG | - | chr6_3:6329764-6329783 | None:intergenic | 65.0% |
| GGCATGACAATGGGGCGGGA+TGG | - | chr6_3:6329879-6329898 | None:intergenic | 65.0% | |
| AATCCCGGACCAGCTGGTGC+CGG | + | chr6_3:6331388-6331407 | Msa0935710:CDS | 65.0% | |
| TGCGGGGACAGGGATGGAGC+GGG | + | chr6_3:6329733-6329752 | Msa0935710:intron | 70.0% | |
| GCGGGGATACCCGAACCCGT+CGG | + | chr6_3:6329751-6329770 | Msa0935710:intron | 70.0% | |
| CGGGGATACCCGAACCCGTC+GGG | + | chr6_3:6329752-6329771 | Msa0935710:intron | 70.0% | |
| GGGGATACCCGAACCCGTCG+GGG | + | chr6_3:6329753-6329772 | Msa0935710:intron | 70.0% | |
| ACCCGAACCCGTCGGGGATG+GGG | + | chr6_3:6329759-6329778 | Msa0935710:intron | 70.0% | |
| ! | TCCCCATCCCCGACGGGTTC+GGG | - | chr6_3:6329763-6329782 | None:intergenic | 70.0% |
| GGTGCAGCCAGCGGGAATCC+CGG | + | chr6_3:6331373-6331392 | Msa0935710:CDS | 70.0% | |
| AGCTGGTCCGGGATTCCCGC+TGG | - | chr6_3:6331383-6331402 | None:intergenic | 70.0% | |
| AGCGGGAATCCCGGACCAGC+TGG | + | chr6_3:6331382-6331401 | Msa0935710:CDS | 70.0% | |
| AGCTCCGGCACCAGCTGGTC+CGG | - | chr6_3:6331395-6331414 | None:intergenic | 70.0% | |
| GCGGGGACAGGGATGGAGCG+GGG | + | chr6_3:6329734-6329753 | Msa0935710:intron | 75.0% | |
| GCTCCGGCACCAGCTGGTCC+GGG | - | chr6_3:6331394-6331413 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6329170 | 6333013 | 6329170 | ID=Msa0935710;Name=Msa0935710 |
| chr6_3 | mRNA | 6329170 | 6333013 | 6329170 | ID=Msa0935710-mRNA-1;Parent=Msa0935710;Name=Msa0935710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|0.8|1|1|0.6|0.66|6|248|109 |
| chr6_3 | exon | 6329170 | 6329249 | 6329170 | ID=Msa0935710-mRNA-1:exon:1961;Parent=Msa0935710-mRNA-1 |
| chr6_3 | exon | 6330330 | 6330374 | 6330330 | ID=Msa0935710-mRNA-1:exon:1962;Parent=Msa0935710-mRNA-1 |
| chr6_3 | exon | 6331349 | 6331441 | 6331349 | ID=Msa0935710-mRNA-1:exon:1963;Parent=Msa0935710-mRNA-1 |
| chr6_3 | exon | 6331959 | 6332066 | 6331959 | ID=Msa0935710-mRNA-1:exon:1964;Parent=Msa0935710-mRNA-1 |
| chr6_3 | exon | 6332340 | 6332391 | 6332340 | ID=Msa0935710-mRNA-1:exon:1965;Parent=Msa0935710-mRNA-1 |
| chr6_3 | exon | 6332734 | 6333013 | 6332734 | ID=Msa0935710-mRNA-1:exon:1966;Parent=Msa0935710-mRNA-1 |
| chr6_3 | five_prime_UTR | 6329170 | 6329249 | 6329170 | ID=Msa0935710-mRNA-1:five_prime_utr;Parent=Msa0935710-mRNA-1 |
| chr6_3 | CDS | 6330330 | 6330374 | 6330330 | ID=Msa0935710-mRNA-1:cds;Parent=Msa0935710-mRNA-1 |
| chr6_3 | CDS | 6331349 | 6331441 | 6331349 | ID=Msa0935710-mRNA-1:cds;Parent=Msa0935710-mRNA-1 |
| chr6_3 | CDS | 6331959 | 6332066 | 6331959 | ID=Msa0935710-mRNA-1:cds;Parent=Msa0935710-mRNA-1 |
| chr6_3 | CDS | 6332340 | 6332391 | 6332340 | ID=Msa0935710-mRNA-1:cds;Parent=Msa0935710-mRNA-1 |
| chr6_3 | CDS | 6332734 | 6332765 | 6332734 | ID=Msa0935710-mRNA-1:cds;Parent=Msa0935710-mRNA-1 |
| chr6_3 | three_prime_UTR | 6332766 | 6333013 | 6332766 | ID=Msa0935710-mRNA-1:three_prime_utr;Parent=Msa0935710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
