AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 126 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATAGGTTCCTTAAATT+TGG 0.076392 6_1:-4288314 None:intergenic
ATTTGATGCAAATTACTTTA+TGG 0.123177 6_1:-4289440 None:intergenic
AAGCCTACTAGTTAGCATTT+AGG 0.197663 6_1:+4289063 Msa0869990:three_prime_UTR
TTAGAAGCAATTAATTAAAT+TGG 0.201484 6_1:-4290158 None:intergenic
CATTGTATAATTAATGTATT+TGG 0.220646 6_1:+4289578 Msa0869990:three_prime_UTR
TTCATTGGTCTAATTCTTCT+TGG 0.234515 6_1:+4289826 Msa0869990:three_prime_UTR
AGCCTACTAGTTAGCATTTA+GGG 0.241066 6_1:+4289064 Msa0869990:three_prime_UTR
TGAGTATAATGGTCTTCTTT+TGG 0.243282 6_1:+4287981 Msa0869990:CDS
AATCTAATATCTTACTATTA+AGG 0.251249 6_1:+4289981 Msa0869990:three_prime_UTR
CTATGCACTTACACCTTGTT+TGG 0.255931 6_1:+4290131 Msa0869990:three_prime_UTR
CAAAAGTTTAACAAATTTAT+CGG 0.281331 6_1:-4289384 None:intergenic
TTTGATGCAAATTACTTTAT+GGG 0.295133 6_1:-4289439 None:intergenic
CTCTCAGCTTGTTTGCAATC+AGG 0.296249 6_1:+4288056 Msa0869990:three_prime_UTR
ATTGCTTAAGAGGCTTAAAA+TGG 0.304687 6_1:+4289176 Msa0869990:three_prime_UTR
TCTTGTATCGTTGAATTTGA+TGG 0.314458 6_1:+4281666 Msa0869990:exon
TCTTGTATCGTTGAATTTGA+TGG 0.314458 6_1:+4287753 Msa0869990:CDS
CTATGTTACTTGTCTTGTTT+AGG 0.319869 6_1:+4289038 Msa0869990:three_prime_UTR
TGCAACAGTTTGAGGGTTCC+TGG 0.323750 6_1:+4288279 Msa0869990:intron
TGCATAGGTTCCTTAAATTT+GGG 0.326607 6_1:-4288313 None:intergenic
GGTTCAGGTTGTGGAGTAGC+TGG 0.329342 6_1:+4289692 Msa0869990:three_prime_UTR
AAGTCAACAACCCAAATTTA+AGG 0.331211 6_1:+4288303 Msa0869990:three_prime_UTR
ATTTGGGTTGTTGACTTTCC+AGG 0.336100 6_1:-4288297 None:intergenic
TTCGATTCCTGACTCATGTT+TGG 0.338288 6_1:-4290238 None:intergenic
TTCTCATTGTGATACTCATT+TGG 0.345635 6_1:-4289754 None:intergenic
TCTCTTGATGGTTCAGGTTG+TGG 0.346648 6_1:+4289683 Msa0869990:three_prime_UTR
TGTATGACCATGGTAGGTTT+TGG 0.348487 6_1:+4289337 Msa0869990:three_prime_UTR
GCATAGGGTGGAACACGTTT+AGG 0.353946 6_1:-4290114 None:intergenic
ATCTTACTATTAAGGTCCTA+TGG 0.360534 6_1:+4289989 Msa0869990:three_prime_UTR
ATATTCCACCATTGCTTAAG+AGG 0.372656 6_1:+4289166 Msa0869990:three_prime_UTR
CCCTTCAGTATGCATTTCAT+TGG 0.380771 6_1:+4289811 Msa0869990:three_prime_UTR
AATAATTCTGCTGAGTATAA+TGG 0.382560 6_1:+4287970 Msa0869990:CDS
GCTTCTAACATATGCATTTG+TGG 0.387373 6_1:+4290173 Msa0869990:three_prime_UTR
GTGAATTATCTCATTTCAAC+CGG 0.389133 6_1:+4290206 Msa0869990:three_prime_UTR
GAAGTATCTCTTGATGGTTC+AGG 0.401914 6_1:+4289677 Msa0869990:three_prime_UTR
GCTCCTGCACCAGACCTTCC+AGG 0.402463 6_1:-4281705 None:intergenic
GCTCCTGCACCAGACCTTCC+AGG 0.402463 6_1:-4287792 None:intergenic
CATGAATATGTTCATATCCT+TGG 0.414089 6_1:-4288023 None:intergenic
CCGGAGGAAGTATCTCTTGA+TGG 0.426346 6_1:+4289671 Msa0869990:three_prime_UTR
CGTTTAGGAAGGATACTAGT+TGG 0.454262 6_1:-4290099 None:intergenic
ATTTAGACCCCTTTGATATG+TGG 0.455255 6_1:-4290268 None:intergenic
AGAGTAACTTCAAGTCAGTC+AGG 0.457011 6_1:+4288354 Msa0869990:three_prime_UTR
GGAGCATCCAGTGGAAATCC+TGG 0.459158 6_1:+4281687 Msa0869990:CDS
GGAGCATCCAGTGGAAATCC+TGG 0.459158 6_1:+4287774 Msa0869990:CDS
TCCGTTCTGCAGATGGGAGT+CGG 0.461814 6_1:+4281733 Msa0869990:CDS
TCCGTTCTGCAGATGGGAGT+CGG 0.461814 6_1:+4287820 Msa0869990:CDS
ACCTCTGACCACATATCAAA+GGG 0.463459 6_1:+4290260 Msa0869990:three_prime_UTR
CATGGCGTCAGCCAAGGACT+TGG 0.463996 6_1:+4287937 Msa0869990:CDS
ATAGTGGACTTAAATAAGTT+AGG 0.472307 6_1:+4289725 Msa0869990:three_prime_UTR
AGTGGAAATCCTGGAAGGTC+TGG 0.475520 6_1:+4281696 Msa0869990:CDS
AGTGGAAATCCTGGAAGGTC+TGG 0.475520 6_1:+4287783 Msa0869990:CDS
TATGTCTCTTTATAGGTCCA+TGG 0.481724 6_1:+4287919 Msa0869990:intron
TCAGGGTCGAACATGTTCCT+AGG 0.482331 6_1:+4288372 Msa0869990:three_prime_UTR
TAATGTTTGAATTTCATGCT+TGG 0.494753 6_1:+4289207 Msa0869990:three_prime_UTR
GTTCAGGTTGTGGAGTAGCT+GGG 0.495211 6_1:+4289693 Msa0869990:three_prime_UTR
CCGTTCTGCAGATGGGAGTC+GGG 0.496764 6_1:+4281734 Msa0869990:CDS
CCGTTCTGCAGATGGGAGTC+GGG 0.496764 6_1:+4287821 Msa0869990:CDS
TTGTTTGAGTGCCAAGTCCT+TGG 0.498512 6_1:-4287948 None:intergenic
TATGCCATGGCGAACATGAC+TGG 0.508165 6_1:+4289303 Msa0869990:three_prime_UTR
ACTGAAGGGACTGACTTCTC+TGG 0.523582 6_1:-4289797 None:intergenic
GAACCTATGCAATGAGGCTG+TGG 0.532829 6_1:+4288325 Msa0869990:three_prime_UTR
TATGGGTGGTGATTGACCTA+CGG 0.541393 6_1:-4289422 None:intergenic
GCTCCACAGCCTCATTGCAT+AGG 0.541509 6_1:-4288328 None:intergenic
AAACAAGGTGTAAGTGCATA+GGG 0.541750 6_1:-4290129 None:intergenic
ATGTGACACTGCATGTCAAA+GGG 0.541910 6_1:+4289097 Msa0869990:three_prime_UTR
CAAGTCCTTGGCTGACGCCA+TGG 0.543645 6_1:-4287936 None:intergenic
CTGTTATCCGTTCTGCAGAT+GGG 0.545170 6_1:+4281727 Msa0869990:CDS
CTGTTATCCGTTCTGCAGAT+GGG 0.545170 6_1:+4287814 Msa0869990:CDS
TATGTAAACGTGAAGATGAA+AGG 0.545886 6_1:+4289525 Msa0869990:three_prime_UTR
CAAACAAGGTGTAAGTGCAT+AGG 0.547897 6_1:-4290130 None:intergenic
GCTGTTATCCGTTCTGCAGA+TGG 0.548893 6_1:+4281726 Msa0869990:CDS
GCTGTTATCCGTTCTGCAGA+TGG 0.548893 6_1:+4287813 Msa0869990:CDS
TTAAGCCTCTTAAGCAATGG+TGG 0.548954 6_1:-4289171 None:intergenic
CATGTGACACTGCATGTCAA+AGG 0.549075 6_1:+4289096 Msa0869990:three_prime_UTR
ATTAAGTTACTCATTTACAC+TGG 0.551043 6_1:-4290068 None:intergenic
TCTTACTATTAAGGTCCTAT+GGG 0.553216 6_1:+4289990 Msa0869990:three_prime_UTR
AGACCTTCCAGGATTTCCAC+TGG 0.556723 6_1:-4281694 None:intergenic
AGACCTTCCAGGATTTCCAC+TGG 0.556723 6_1:-4287781 None:intergenic
TAGGTCCATGGCGTCAGCCA+AGG 0.557191 6_1:+4287931 Msa0869990:intron
ACCAATGAAATGCATACTGA+AGG 0.561481 6_1:-4289812 None:intergenic
ATGCATTTGTGGCACATACA+AGG 0.564758 6_1:+4290184 Msa0869990:three_prime_UTR
AATCCTGGAAGGTCTGGTGC+AGG 0.565510 6_1:+4281702 Msa0869990:CDS
AATCCTGGAAGGTCTGGTGC+AGG 0.565510 6_1:+4287789 Msa0869990:CDS
TTAAATTGGTTGTCCAAACA+AGG 0.566502 6_1:-4290144 None:intergenic
TAATATCTTGTGATATGCCA+TGG 0.567729 6_1:+4289290 Msa0869990:three_prime_UTR
TATTAAGGTCCTATGGGATG+AGG 0.571787 6_1:+4289996 Msa0869990:three_prime_UTR
ATGGTGGAATATACACATCA+TGG 0.573485 6_1:-4289155 None:intergenic
AACCTCTGACCACATATCAA+AGG 0.573941 6_1:+4290259 Msa0869990:three_prime_UTR
GTAGTAATATTCAACTTCGC+CGG 0.574495 6_1:-4288985 None:intergenic
CCAATGAAATGCATACTGAA+GGG 0.576051 6_1:-4289811 None:intergenic
CCCCTTTGATATGTGGTCAG+AGG 0.577078 6_1:-4290261 None:intergenic
CATAAAACCAAAACCTACCA+TGG 0.584026 6_1:-4289344 None:intergenic
GCCTACTAGTTAGCATTTAG+GGG 0.584072 6_1:+4289065 Msa0869990:three_prime_UTR
CTGAAAGAAGCTAGCAACCA+AGG 0.584237 6_1:+4288006 Msa0869990:exon
CAGGGTCGAACATGTTCCTA+GGG 0.587867 6_1:+4288373 Msa0869990:three_prime_UTR
CAATGGATGCCTCATCCCAT+AGG 0.588096 6_1:-4290005 None:intergenic
GTTTAATGTATGACCATGGT+AGG 0.593786 6_1:+4289331 Msa0869990:three_prime_UTR
AGCTGGGTTTCTGAACATAG+TGG 0.601002 6_1:+4289709 Msa0869990:three_prime_UTR
TTAGTTAGTGAGAATAACAA+TGG 0.604756 6_1:-4290022 None:intergenic
CCATCAAGAGATACTTCCTC+CGG 0.606044 6_1:-4289671 None:intergenic
GAGCAAACTGAGAGAACCGT+AGG 0.613306 6_1:+4289406 Msa0869990:three_prime_UTR
AGCATGCATTACTCAAGACA+TGG 0.615653 6_1:-4289491 None:intergenic
GAATTTGATGGAGCATCCAG+TGG 0.617460 6_1:+4281678 Msa0869990:exon
GAATTTGATGGAGCATCCAG+TGG 0.617460 6_1:+4287765 Msa0869990:CDS
TCTTGGAGTGAATAATGTGG+AGG 0.620421 6_1:+4289843 Msa0869990:three_prime_UTR
AGGGTGGAACACGTTTAGGA+AGG 0.628958 6_1:-4290110 None:intergenic
CCATCCAGTCATGTTCGCCA+TGG 0.629927 6_1:-4289307 None:intergenic
CATTACTCAAGACATGGGAC+AGG 0.632885 6_1:-4289485 None:intergenic
CCCGACTCCCATCTGCAGAA+CGG 0.635424 6_1:-4281734 None:intergenic
CCCGACTCCCATCTGCAGAA+CGG 0.635424 6_1:-4287821 None:intergenic
CCTACTAGTTAGCATTTAGG+GGG 0.636998 6_1:+4289066 Msa0869990:three_prime_UTR
TCTTCTTGGAGTGAATAATG+TGG 0.639515 6_1:+4289840 Msa0869990:three_prime_UTR
TTTAAGGAACCTATGCAATG+AGG 0.642695 6_1:+4288319 Msa0869990:three_prime_UTR
GATGCAAATTACTTTATGGG+TGG 0.644660 6_1:-4289436 None:intergenic
GCTGATGCTCAAGCAAATCG+CGG 0.646058 6_1:+4288746 Msa0869990:three_prime_UTR
GAGTAACTTCAAGTCAGTCA+GGG 0.650851 6_1:+4288355 Msa0869990:three_prime_UTR
CATCCAGTGGAAATCCTGGA+AGG 0.657104 6_1:+4281691 Msa0869990:CDS
CATCCAGTGGAAATCCTGGA+AGG 0.657104 6_1:+4287778 Msa0869990:CDS
TATGAACATATTCATGTCCG+AGG 0.657308 6_1:+4288030 Msa0869990:three_prime_UTR
CCATGGCGAACATGACTGGA+TGG 0.671111 6_1:+4289307 Msa0869990:three_prime_UTR
GCATGCATTACTCAAGACAT+GGG 0.690542 6_1:-4289490 None:intergenic
GAAATTCATAAACATTCACA+TGG 0.691845 6_1:-4289233 None:intergenic
TTGCTTATAAATGTGACCGG+AGG 0.698435 6_1:+4289655 Msa0869990:three_prime_UTR
CAAGGTGTAAGTGCATAGGG+TGG 0.699219 6_1:-4290126 None:intergenic
AAACAAGCTGAGAGTCACCT+CGG 0.700596 6_1:-4288047 None:intergenic
CCTCTGACCACATATCAAAG+GGG 0.738306 6_1:+4290261 Msa0869990:three_prime_UTR
TGGTGTTTAATGTATGACCA+TGG 0.742844 6_1:+4289327 Msa0869990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTTATTTTTTTTA+AGG + chr6_1:4283056-4283075 Msa0869990:intron 0.0%
!!! TTTTATTTTTTTTTAAAAAA+AGG - chr6_1:4283973-4283992 None:intergenic 0.0%
!!! TTAAATTTTTTTAATAATAA+AGG + chr6_1:4283999-4284018 Msa0869990:intron 0.0%
!!! ATTTTTCAATTAAAATTACA+AGG - chr6_1:4280291-4280310 None:intergenic 10.0%
!!! GATTTTAAATAATTTTTCAA+CGG - chr6_1:4280611-4280630 None:intergenic 10.0%
!!! TTGAATTATTTAAATTTTTC+GGG + chr6_1:4280650-4280669 Msa0869990:intron 10.0%
!!! TTTTTTTTTTTTTTGTGAAA+GGG - chr6_1:4280978-4280997 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTTGTGAA+AGG - chr6_1:4280979-4280998 None:intergenic 10.0%
!!! GAAATTTTATTTTAACATAA+GGG - chr6_1:4282814-4282833 None:intergenic 10.0%
!! TTATATATAAAAAGGATAAA+CGG - chr6_1:4282904-4282923 None:intergenic 10.0%
!! AAATAAAATTATTTCATATG+TGG - chr6_1:4283050-4283069 None:intergenic 10.0%
!! AAAAAAAAACTGTTTAATAA+AGG + chr6_1:4283102-4283121 Msa0869990:intron 10.0%
!! AAAAAAAACTGTTTAATAAA+GGG + chr6_1:4283103-4283122 Msa0869990:intron 10.0%
!! AAAATTAAAATGTAGTAATA+GGG - chr6_1:4284055-4284074 None:intergenic 10.0%
!! AAAAATTAAAATGTAGTAAT+AGG - chr6_1:4284056-4284075 None:intergenic 10.0%
!!! AAAATATCCATTTTTTTATA+GGG - chr6_1:4284539-4284558 None:intergenic 10.0%
!!! AAAAAAAAAAATGGATATTT+TGG - chr6_1:4284883-4284902 None:intergenic 10.0%
!!! ATATCCATTTTTTTTTTTAT+AGG + chr6_1:4284885-4284904 Msa0869990:intron 10.0%
!! TTTATAATACAAAAGAAAAA+GGG - chr6_1:4285623-4285642 None:intergenic 10.0%
!!! TTTTTCTTTTGTATTATAAA+CGG + chr6_1:4285623-4285642 Msa0869990:intron 10.0%
!!! ATTTTTCAATTAAAATTACA+AGG - chr6_1:4280291-4280310 None:intergenic 10.0%
!!! GATTTTAAATAATTTTTCAA+CGG - chr6_1:4280611-4280630 None:intergenic 10.0%
!!! TTGAATTATTTAAATTTTTC+GGG + chr6_1:4280650-4280669 Msa0869990:intron 10.0%
!!! ATTTTTTTTTTTTTGTGAAA+GGG - chr6_1:4287066-4287085 None:intergenic 10.0%
!!! TATTTTTTTTTTTTTGTGAA+AGG - chr6_1:4287067-4287086 None:intergenic 10.0%
!!! AATTTGGATTATGTTTTATA+AGG + chr6_1:4280140-4280159 Msa0869990:intron 15.0%
!! TATAAAAAAATGATATAAGC+CGG - chr6_1:4280227-4280246 None:intergenic 15.0%
!!! AGTTCTTATTTTATTTTTCT+TGG + chr6_1:4280501-4280520 Msa0869990:intron 15.0%
!!! TATTTTTTTTGATTGAAGAT+GGG - chr6_1:4281793-4281812 None:intergenic 15.0%
!!! ATATTTTTTTTGATTGAAGA+TGG - chr6_1:4281794-4281813 None:intergenic 15.0%
!!! GGATGTTTATTTTTAAAAAA+GGG - chr6_1:4281957-4281976 None:intergenic 15.0%
!! TATGTATTGAAAAAACATAT+GGG - chr6_1:4281979-4281998 None:intergenic 15.0%
!! TTATGTATTGAAAAAACATA+TGG - chr6_1:4281980-4281999 None:intergenic 15.0%
!! TATGTTATGACAAAAAAAAA+GGG - chr6_1:4282019-4282038 None:intergenic 15.0%
!!! GGAAATTTTATTTTAACATA+AGG - chr6_1:4282815-4282834 None:intergenic 15.0%
!!! AAGAATTAAATTAGTTTGAA+TGG - chr6_1:4282836-4282855 None:intergenic 15.0%
!! ATTTAACTACTTATTCAAAA+TGG + chr6_1:4282877-4282896 Msa0869990:intron 15.0%
!!! ACGAAATATTACTTTTTTTT+GGG - chr6_1:4282966-4282985 None:intergenic 15.0%
!!! TACGAAATATTACTTTTTTT+TGG - chr6_1:4282967-4282986 None:intergenic 15.0%
!! TTAATTAAAGAAACAAAGAA+GGG + chr6_1:4283461-4283480 Msa0869990:intron 15.0%
!!! TTAAGATTTAAGTTATCTTT+TGG - chr6_1:4283922-4283941 None:intergenic 15.0%
!! AAAGATAACTTAAATCTTAA+TGG + chr6_1:4283922-4283941 Msa0869990:intron 15.0%
!!! AACTCTTTTTAAAAGTTTTA+AGG - chr6_1:4284374-4284393 None:intergenic 15.0%
!! AGATGAGATAAATAAAAAAT+AGG + chr6_1:4284463-4284482 Msa0869990:intron 15.0%
!!! AAATATCCATTTTTTTATAG+GGG - chr6_1:4284538-4284557 None:intergenic 15.0%
!!! CAAAATATCCATTTTTTTAT+AGG - chr6_1:4284540-4284559 None:intergenic 15.0%
!! TTATAATACAAAAGAAAAAG+GGG - chr6_1:4285622-4285641 None:intergenic 15.0%
!! GTTTATAATACAAAAGAAAA+AGG - chr6_1:4285624-4285643 None:intergenic 15.0%
!! TATTAGAATTGTTAAAAGAA+AGG - chr6_1:4285663-4285682 None:intergenic 15.0%
!!! AATTTGGATTATGTTTTATA+AGG + chr6_1:4280140-4280159 Msa0869990:intron 15.0%
!! TATAAAAAAATGATATAAGC+CGG - chr6_1:4280227-4280246 None:intergenic 15.0%
!!! AGTTCTTATTTTATTTTTCT+TGG + chr6_1:4280501-4280520 Msa0869990:intron 15.0%
!! TTAAATGAAACCATATAATT+TGG - chr6_1:4288167-4288186 None:intergenic 15.0%
!!! ATTTACCATCATATTTTTAT+TGG + chr6_1:4288253-4288272 Msa0869990:intron 15.0%
!!! TTTATTTTCATGTTTGTATT+TGG + chr6_1:4288915-4288934 Msa0869990:intron 15.0%
!! CAAAAGTTTAACAAATTTAT+CGG - chr6_1:4289387-4289406 None:intergenic 15.0%
!! CATTGTATAATTAATGTATT+TGG + chr6_1:4289578-4289597 Msa0869990:three_prime_UTR 15.0%
!! AATCTAATATCTTACTATTA+AGG + chr6_1:4289981-4290000 Msa0869990:three_prime_UTR 15.0%
!! TTAGAAGCAATTAATTAAAT+TGG - chr6_1:4290161-4290180 None:intergenic 15.0%
!!! CAAATCATTTTTAAATCGAA+CGG - chr6_1:4279967-4279986 None:intergenic 20.0%
!! TAAAACATAATCCAAATTTG+CGG - chr6_1:4280138-4280157 None:intergenic 20.0%
!! AGCTTATAGTTTATATTTAC+CGG + chr6_1:4280205-4280224 Msa0869990:intron 20.0%
!! AAAATGATAAGTTATAAGCT+AGG - chr6_1:4280251-4280270 None:intergenic 20.0%
!!! AATGTTTTATACTTATAAGC+TGG + chr6_1:4280336-4280355 Msa0869990:intron 20.0%
!!! TACAATTTTATGTCTGTTTT+TGG - chr6_1:4280718-4280737 None:intergenic 20.0%
!!! AATTATTTAAATTTTTCGGG+TGG + chr6_1:4280767-4280786 Msa0869990:intron 20.0%
!! ATAAAAAAATCAGCGATTAT+AGG - chr6_1:4280874-4280893 None:intergenic 20.0%
!!! GCTGATTTTTTTATTTTTCT+GGG + chr6_1:4280880-4280899 Msa0869990:intron 20.0%
!!! ATTTTTTTATTTTTCTGGGT+GGG + chr6_1:4280884-4280903 Msa0869990:intron 20.0%
!!! ATGAAAATTTTGTCATGTTT+AGG + chr6_1:4281083-4281102 Msa0869990:intron 20.0%
!! AAAGTTATGTAAGTTATTTG+TGG + chr6_1:4281142-4281161 Msa0869990:intron 20.0%
!!! GTTTATTTTTAAAAAAGGGT+AGG - chr6_1:4281953-4281972 None:intergenic 20.0%
!!! GGGATGTTTATTTTTAAAAA+AGG - chr6_1:4281958-4281977 None:intergenic 20.0%
!! ATGTATTGAAAAAACATATG+GGG - chr6_1:4281978-4281997 None:intergenic 20.0%
!! ACAAAAAAAAAGGGTAAAAA+GGG - chr6_1:4282010-4282029 None:intergenic 20.0%
!! CTATGTTATGACAAAAAAAA+AGG - chr6_1:4282020-4282039 None:intergenic 20.0%
!! TTTGTCATAACATAGTAATA+AGG + chr6_1:4282025-4282044 Msa0869990:intron 20.0%
!!! GTCTCTTTTTTTTTTTTGAA+AGG + chr6_1:4282484-4282503 Msa0869990:intron 20.0%
!! ATTAGAACAAAATTATTCTC+TGG - chr6_1:4282537-4282556 None:intergenic 20.0%
!! GTTAATTAAAGAAACAAAGA+AGG + chr6_1:4283460-4283479 Msa0869990:intron 20.0%
!! TATTGTTTAAAGAAACCTTA+AGG + chr6_1:4283521-4283540 Msa0869990:intron 20.0%
!! ATTGTTTAAAGAAACCTTAA+GGG + chr6_1:4283522-4283541 Msa0869990:intron 20.0%
!! TTTAGATTTGAATAAGAAGT+CGG - chr6_1:4283684-4283703 None:intergenic 20.0%
!!! GATAAATGTTTTAGTGTTTT+AGG - chr6_1:4283793-4283812 None:intergenic 20.0%
!! TTTATCTATAACAAAAGTTG+AGG + chr6_1:4283857-4283876 Msa0869990:intron 20.0%
!!! TCTATACTTTAGAATATTGT+AGG + chr6_1:4284436-4284455 Msa0869990:intron 20.0%
!!! CTATACTTTAGAATATTGTA+GGG + chr6_1:4284437-4284456 Msa0869990:intron 20.0%
!!! AATATCCATTTTTTTATAGG+GGG - chr6_1:4284537-4284556 None:intergenic 20.0%
!!! TCCATTTTTTTTTTTATAGG+AGG + chr6_1:4284888-4284907 Msa0869990:intron 20.0%
!! ACCTCCTATAAAAAAAAAAA+TGG - chr6_1:4284892-4284911 None:intergenic 20.0%
!!! GAATATGTTTTTATGAGAAT+CGG + chr6_1:4285217-4285236 Msa0869990:intron 20.0%
!!! AATATGTTTTTATGAGAATC+GGG + chr6_1:4285218-4285237 Msa0869990:intron 20.0%
!! TAACTACTAGTACTATTTAT+AGG - chr6_1:4285690-4285709 None:intergenic 20.0%
!!! CAAATCATTTTTAAATCGAA+CGG - chr6_1:4279967-4279986 None:intergenic 20.0%
!! TAAAACATAATCCAAATTTG+CGG - chr6_1:4280138-4280157 None:intergenic 20.0%
!! AGCTTATAGTTTATATTTAC+CGG + chr6_1:4280205-4280224 Msa0869990:intron 20.0%
!! AAAATGATAAGTTATAAGCT+AGG - chr6_1:4280251-4280270 None:intergenic 20.0%
!!! AATGTTTTATACTTATAAGC+TGG + chr6_1:4280336-4280355 Msa0869990:intron 20.0%
!!! TACAATTTTATGTCTGTTTT+TGG - chr6_1:4280718-4280737 None:intergenic 20.0%
!!! AATTATTTAAATTTTTCGGG+TGG + chr6_1:4280767-4280786 Msa0869990:intron 20.0%
!!! ATTATTTAAATTTTTCGGGT+GGG + chr6_1:4280768-4280787 Msa0869990:intron 20.0%
!! ATAAAAAAATCAGCGATTAT+AGG - chr6_1:4280874-4280893 None:intergenic 20.0%
!!! GCTGATTTTTTTATTTTTCT+GGG + chr6_1:4280880-4280899 Msa0869990:intron 20.0%
!!! ATTTTTTTATTTTTCTGGGT+GGG + chr6_1:4280884-4280903 Msa0869990:intron 20.0%
!!! ATGAAAATTTTGTCATGTTT+AGG + chr6_1:4281083-4281102 Msa0869990:intron 20.0%
!! AAAGTTATGTAAGTTATTTG+TGG + chr6_1:4281142-4281161 Msa0869990:intron 20.0%
!! ATAACACAATCCAAATTATA+TGG + chr6_1:4288154-4288173 Msa0869990:intron 20.0%
!! CAAAACCAATAAAAATATGA+TGG - chr6_1:4288261-4288280 None:intergenic 20.0%
!!! TTATTGCTATTTCATTTACT+TGG - chr6_1:4288839-4288858 None:intergenic 20.0%
!!! TTTTTTTAAAAAAGCAGCTT+TGG - chr6_1:4288869-4288888 None:intergenic 20.0%
!! GCTGCAAAAAAAAAAAATAT+AGG - chr6_1:4288966-4288985 None:intergenic 20.0%
!!! ATATTTTTTTTTTTTGCAGC+CGG + chr6_1:4288966-4288985 Msa0869990:intron 20.0%
!! TTTGATGCAAATTACTTTAT+GGG - chr6_1:4289442-4289461 None:intergenic 20.0%
!! ATTTGATGCAAATTACTTTA+TGG - chr6_1:4289443-4289462 None:intergenic 20.0%
! CGTTCGATTTAAAAATGATT+TGG + chr6_1:4279965-4279984 Msa0869990:intron 25.0%
! ATCAAAATTTAGAGATTGGA+CGG - chr6_1:4280008-4280027 None:intergenic 25.0%
! TTCATCAGTTATCAATGATT+AGG + chr6_1:4280098-4280117 Msa0869990:intron 25.0%
! AAAATAACAAGCACTTATAG+TGG - chr6_1:4280423-4280442 None:intergenic 25.0%
! AAAGAAGTTTATGCTTATTG+TGG + chr6_1:4280527-4280546 Msa0869990:intron 25.0%
!! TTTTCAACGGTTAATTTTAG+TGG - chr6_1:4280598-4280617 None:intergenic 25.0%
!!! TTTATGTCTGTTTTTGGTTT+TGG - chr6_1:4280712-4280731 None:intergenic 25.0%
!! TATAATTTTGTGTCCGTTTT+AGG - chr6_1:4280832-4280851 None:intergenic 25.0%
!!! CGCTGATTTTTTTATTTTTC+TGG + chr6_1:4280879-4280898 Msa0869990:intron 25.0%
!!! GATTTTTTTATTTTTCTGGG+TGG + chr6_1:4280883-4280902 Msa0869990:intron 25.0%
! ACACATTATCTTATAGTTGT+AGG + chr6_1:4281429-4281448 Msa0869990:intron 25.0%
!! CATTTGAAGTGTAAATTACA+TGG - chr6_1:4281507-4281526 None:intergenic 25.0%
!! AACTTTTATAGCCATACATT+AGG - chr6_1:4281534-4281553 None:intergenic 25.0%
!! CATGATAAGTATTTTATCAG+AGG + chr6_1:4281618-4281637 Msa0869990:intron 25.0%
! AGGATTAATGAATGAATGTT+AGG - chr6_1:4281917-4281936 None:intergenic 25.0%
!!! TTTTTAAAAAAGGGTAGGTT+GGG - chr6_1:4281948-4281967 None:intergenic 25.0%
!!! ATTTTTAAAAAAGGGTAGGT+TGG - chr6_1:4281949-4281968 None:intergenic 25.0%
! GACAAAAAAAAAGGGTAAAA+AGG - chr6_1:4282011-4282030 None:intergenic 25.0%
!!! TTTTTCAAATCCATCATCAT+TGG - chr6_1:4282270-4282289 None:intergenic 25.0%
! TGGATGATTCTACAAAAATA+GGG - chr6_1:4282298-4282317 None:intergenic 25.0%
! TTGGATGATTCTACAAAAAT+AGG - chr6_1:4282299-4282318 None:intergenic 25.0%
!!! AATTAGTTTCTCTGAGTTTT+TGG - chr6_1:4282405-4282424 None:intergenic 25.0%
! ACTGATTAATGTACAAACAT+GGG - chr6_1:4282466-4282485 None:intergenic 25.0%
! GAGAAATATTGTAGATTTGA+TGG + chr6_1:4282713-4282732 Msa0869990:intron 25.0%
!!! GAAAATGCTACACTTTTTTT+TGG - chr6_1:4282944-4282963 None:intergenic 25.0%
!! ATACTACAAAGAATTTTGTG+TGG + chr6_1:4283171-4283190 Msa0869990:intron 25.0%
!! TACTACAAAGAATTTTGTGT+GGG + chr6_1:4283172-4283191 Msa0869990:intron 25.0%
! TTGTATGATAACTCCATTAA+CGG - chr6_1:4283428-4283447 None:intergenic 25.0%
! TTAATGGAGTTATCATACAA+AGG + chr6_1:4283428-4283447 Msa0869990:intron 25.0%
! TAATGGAGTTATCATACAAA+GGG + chr6_1:4283429-4283448 Msa0869990:intron 25.0%
!!! AGTGTTCATTTTTAAACTAG+AGG + chr6_1:4283489-4283508 Msa0869990:intron 25.0%
!!! GTGTTCATTTTTAAACTAGA+GGG + chr6_1:4283490-4283509 Msa0869990:intron 25.0%
!!! TGTTCATTTTTAAACTAGAG+GGG + chr6_1:4283491-4283510 Msa0869990:intron 25.0%
! AAAGACTAGCATTAAAAGTA+AGG - chr6_1:4283564-4283583 None:intergenic 25.0%
!!! GTTCCTTTAAAATAAAACAC+AGG + chr6_1:4283592-4283611 Msa0869990:intron 25.0%
!!! TGTCCTGTGTTTTATTTTAA+AGG - chr6_1:4283598-4283617 None:intergenic 25.0%
! GATATTGCAAATAACTGATA+AGG - chr6_1:4284098-4284117 None:intergenic 25.0%
!!! TTTTGATTAGCTGATTTTGA+TGG + chr6_1:4284581-4284600 Msa0869990:intron 25.0%
!! CTGATTTTATGTCAATTTCT+CGG - chr6_1:4284830-4284849 None:intergenic 25.0%
! TAAAATCAGCTAATCAAAAG+AGG + chr6_1:4284841-4284860 Msa0869990:intron 25.0%
! AAAATCAGCTAATCAAAAGA+GGG + chr6_1:4284842-4284861 Msa0869990:intron 25.0%
! GCATAGAAAATATTCAATGT+CGG + chr6_1:4284944-4284963 Msa0869990:intron 25.0%
! AGATTTATTACCACAAACTA+CGG - chr6_1:4285130-4285149 None:intergenic 25.0%
! TTGGTTAAACTTATACATCA+TGG + chr6_1:4285247-4285266 Msa0869990:intron 25.0%
!!! AGTCTCTTCATTTTTCTTTA+AGG + chr6_1:4285326-4285345 Msa0869990:intron 25.0%
!! TTCTACTCTTTTTCTGTTTA+TGG - chr6_1:4285746-4285765 None:intergenic 25.0%
! CGTTCGATTTAAAAATGATT+TGG + chr6_1:4279965-4279984 Msa0869990:intron 25.0%
! ATCAAAATTTAGAGATTGGA+CGG - chr6_1:4280008-4280027 None:intergenic 25.0%
! TTCATCAGTTATCAATGATT+AGG + chr6_1:4280098-4280117 Msa0869990:intron 25.0%
! AAAATAACAAGCACTTATAG+TGG - chr6_1:4280423-4280442 None:intergenic 25.0%
! AAAGAAGTTTATGCTTATTG+TGG + chr6_1:4280527-4280546 Msa0869990:intron 25.0%
!! TTTTCAACGGTTAATTTTAG+TGG - chr6_1:4280598-4280617 None:intergenic 25.0%
!!! TTTATGTCTGTTTTTGGTTT+TGG - chr6_1:4280712-4280731 None:intergenic 25.0%
!! TATAATTTTGTGTCCGTTTT+AGG - chr6_1:4280832-4280851 None:intergenic 25.0%
!!! CGCTGATTTTTTTATTTTTC+TGG + chr6_1:4280879-4280898 Msa0869990:intron 25.0%
!!! GATTTTTTTATTTTTCTGGG+TGG + chr6_1:4280883-4280902 Msa0869990:intron 25.0%
! ACACATTATCTTATAGTTGT+AGG + chr6_1:4281429-4281448 Msa0869990:intron 25.0%
!! CATTTGAAGTGTAAATTACA+TGG - chr6_1:4281507-4281526 None:intergenic 25.0%
!! AACTTTTATAGCCATACATT+AGG - chr6_1:4281534-4281553 None:intergenic 25.0%
!! CATGATAAGTATTTTATCAG+AGG + chr6_1:4281618-4281637 Msa0869990:intron 25.0%
! AACACTTTATGTCTCTTTAT+AGG + chr6_1:4287912-4287931 Msa0869990:intron 25.0%
! AATAATTCTGCTGAGTATAA+TGG + chr6_1:4287970-4287989 Msa0869990:CDS 25.0%
! ATTTAAGTGGTACTTTGTAA+GGG - chr6_1:4288088-4288107 None:intergenic 25.0%
! AATTTAAGTGGTACTTTGTA+AGG - chr6_1:4288089-4288108 None:intergenic 25.0%
!!! TTGTTCTGGAAAACTAAAAA+AGG + chr6_1:4288482-4288501 Msa0869990:intron 25.0%
!!! ACTCGTTTTTTTATTGTTGA+AGG + chr6_1:4288709-4288728 Msa0869990:intron 25.0%
!!! CTCGTTTTTTTATTGTTGAA+GGG + chr6_1:4288710-4288729 Msa0869990:intron 25.0%
!! TTTTCATGTTTGTATTTGGA+AGG + chr6_1:4288919-4288938 Msa0869990:intron 25.0%
! TTTCATGTTTGTATTTGGAA+GGG + chr6_1:4288920-4288939 Msa0869990:intron 25.0%
! TAATGTTTGAATTTCATGCT+TGG + chr6_1:4289207-4289226 Msa0869990:three_prime_UTR 25.0%
! GAAATTCATAAACATTCACA+TGG - chr6_1:4289236-4289255 None:intergenic 25.0%
!! TTCTATCTTTTGTCTTCATT+TGG + chr6_1:4289253-4289272 Msa0869990:three_prime_UTR 25.0%
!! ATTTTGCTTATAAATGTGAC+CGG + chr6_1:4289652-4289671 Msa0869990:three_prime_UTR 25.0%
!!! ATAGTGGACTTAAATAAGTT+AGG + chr6_1:4289725-4289744 Msa0869990:three_prime_UTR 25.0%
! TTAGTTAGTGAGAATAACAA+TGG - chr6_1:4290025-4290044 None:intergenic 25.0%
! ATTAAGTTACTCATTTACAC+TGG - chr6_1:4290071-4290090 None:intergenic 25.0%
! TCATGTTTGGAAAAAAAATC+CGG - chr6_1:4290228-4290247 None:intergenic 25.0%
CGTTTGTATAGAGAATTGTT+AGG + chr6_1:4279811-4279830 Msa0869990:intron 30.0%
CTCGATCAAAATTTAGAGAT+TGG - chr6_1:4280012-4280031 None:intergenic 30.0%
ATCAATGATTAGGATCTGTT+TGG + chr6_1:4280108-4280127 Msa0869990:intron 30.0%
AGTTTATGCTTATTGTGGTT+AGG + chr6_1:4280532-4280551 Msa0869990:intron 30.0%
TAAGAGATAAACATTACCAG+TGG - chr6_1:4280942-4280961 None:intergenic 30.0%
! ACTTTTACACGATTCTAATC+TGG + chr6_1:4281113-4281132 Msa0869990:intron 30.0%
! CTTTTACACGATTCTAATCT+GGG + chr6_1:4281114-4281133 Msa0869990:intron 30.0%
!!! TTAAGCCTAGTTTTAGTGTA+TGG + chr6_1:4281226-4281245 Msa0869990:intron 30.0%
!!! TAAGCCTAGTTTTAGTGTAT+GGG + chr6_1:4281227-4281246 Msa0869990:intron 30.0%
TCAAATGTCATCCTAATGTA+TGG + chr6_1:4281520-4281539 Msa0869990:intron 30.0%
! CGAAATTGATTTCCTCTATA+AGG + chr6_1:4281557-4281576 Msa0869990:intron 30.0%
TCTTGTATCGTTGAATTTGA+TGG + chr6_1:4281666-4281685 Msa0869990:exon 30.0%
CTCTATTCATCAAATCAAAG+AGG + chr6_1:4281763-4281782 Msa0869990:intron 30.0%
!!! TTTTTTGATTGAAGATGGGT+GGG - chr6_1:4281789-4281808 None:intergenic 30.0%
!!! TTTTTTTGATTGAAGATGGG+TGG - chr6_1:4281790-4281809 None:intergenic 30.0%
! GTTTTCTGTATGTAACACAA+GGG - chr6_1:4281877-4281896 None:intergenic 30.0%
! TGTTTTCTGTATGTAACACA+AGG - chr6_1:4281878-4281897 None:intergenic 30.0%
GTTACATACAGAAAACAAAG+TGG + chr6_1:4281881-4281900 Msa0869990:intron 30.0%
! AATGAATGTTAGGACTTTTG+GGG - chr6_1:4281907-4281926 None:intergenic 30.0%
! GAATGAATGTTAGGACTTTT+GGG - chr6_1:4281908-4281927 None:intergenic 30.0%
! TGAATGAATGTTAGGACTTT+TGG - chr6_1:4281909-4281928 None:intergenic 30.0%
TAAGGAGATATAATCTCTCT+AGG + chr6_1:4282043-4282062 Msa0869990:intron 30.0%
!! GCAATTTTTGATTCCATTGA+AGG + chr6_1:4282176-4282195 Msa0869990:intron 30.0%
TGGTATTAATTCAGTTGGTT+TGG - chr6_1:4282318-4282337 None:intergenic 30.0%
CTTGTTGGTATTAATTCAGT+TGG - chr6_1:4282323-4282342 None:intergenic 30.0%
CAACTGAATTAATACCAACA+AGG + chr6_1:4282321-4282340 Msa0869990:intron 30.0%
! TTGGATTTTGTGAATTCTGA+TGG - chr6_1:4282386-4282405 None:intergenic 30.0%
GACTGATTAATGTACAAACA+TGG - chr6_1:4282467-4282486 None:intergenic 30.0%
AGAACAAAATTATTCTCTGG+TGG - chr6_1:4282534-4282553 None:intergenic 30.0%
CTCATGAATATGAGGATTTA+GGG + chr6_1:4282618-4282637 Msa0869990:intron 30.0%
!! TGTAGATTTGATGGATTGTT+TGG + chr6_1:4282722-4282741 Msa0869990:intron 30.0%
AATTGAATGAAAAGAGAACG+AGG + chr6_1:4283136-4283155 Msa0869990:intron 30.0%
ATTGAATGAAAAGAGAACGA+GGG + chr6_1:4283137-4283156 Msa0869990:intron 30.0%
ATAAGTTAACAGACCGTTAA+TGG + chr6_1:4283412-4283431 Msa0869990:intron 30.0%
ATTAAAGAAACAAAGAAGGG+AGG + chr6_1:4283464-4283483 Msa0869990:intron 30.0%
!! GTTCATTTTTAAACTAGAGG+GGG + chr6_1:4283492-4283511 Msa0869990:intron 30.0%
ACTACAATCTACAACTTATC+AGG - chr6_1:4284276-4284295 None:intergenic 30.0%
TGAAGACTACAATGATTGAA+TGG - chr6_1:4284306-4284325 None:intergenic 30.0%
TCTTCAATGATTCACTATCT+TGG + chr6_1:4284320-4284339 Msa0869990:intron 30.0%
!!! GCAACTTTTTGAAACATAAG+GGG - chr6_1:4284506-4284525 None:intergenic 30.0%
!!! CGCAACTTTTTGAAACATAA+GGG - chr6_1:4284507-4284526 None:intergenic 30.0%
!!! TCGCAACTTTTTGAAACATA+AGG - chr6_1:4284508-4284527 None:intergenic 30.0%
! GTTTCAAAAAGTTGCGATTT+TGG + chr6_1:4284511-4284530 Msa0869990:intron 30.0%
!!! TATTTTGACTCCCTAACTTT+TGG + chr6_1:4284553-4284572 Msa0869990:intron 30.0%
CAAAAGATGACCAAAAGTTA+GGG - chr6_1:4284566-4284585 None:intergenic 30.0%
TCAAAAGATGACCAAAAGTT+AGG - chr6_1:4284567-4284586 None:intergenic 30.0%
TCAAAAGAGGGTTAAAAGTT+AGG + chr6_1:4284854-4284873 Msa0869990:intron 30.0%
CAAAAGAGGGTTAAAAGTTA+GGG + chr6_1:4284855-4284874 Msa0869990:intron 30.0%
AAAAGAGGGTTAAAAGTTAG+GGG + chr6_1:4284856-4284875 Msa0869990:intron 30.0%
AAACTTGTGTTATGCTACAA+AGG - chr6_1:4285036-4285055 None:intergenic 30.0%
! CACAAGTTTTCTAAACAGAT+AGG + chr6_1:4285047-4285066 Msa0869990:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr6_1:4285399-4285418 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr6_1:4285400-4285419 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr6_1:4285520-4285539 Msa0869990:intron 30.0%
TTGCAATTTATCTGCATTCA+AGG + chr6_1:4285549-4285568 Msa0869990:intron 30.0%
TGACTAAATGCAAACGAAAA+TGG - chr6_1:4285875-4285894 None:intergenic 30.0%
CGTTTGTATAGAGAATTGTT+AGG + chr6_1:4279811-4279830 Msa0869990:intron 30.0%
CTCGATCAAAATTTAGAGAT+TGG - chr6_1:4280012-4280031 None:intergenic 30.0%
ATCAATGATTAGGATCTGTT+TGG + chr6_1:4280108-4280127 Msa0869990:intron 30.0%
AGTTTATGCTTATTGTGGTT+AGG + chr6_1:4280532-4280551 Msa0869990:intron 30.0%
TAAGAGATAAACATTACCAG+TGG - chr6_1:4280942-4280961 None:intergenic 30.0%
! ACTTTTACACGATTCTAATC+TGG + chr6_1:4281113-4281132 Msa0869990:intron 30.0%
! CTTTTACACGATTCTAATCT+GGG + chr6_1:4281114-4281133 Msa0869990:intron 30.0%
!!! TTAAGCCTAGTTTTAGTGTA+TGG + chr6_1:4281226-4281245 Msa0869990:intron 30.0%
!!! TAAGCCTAGTTTTAGTGTAT+GGG + chr6_1:4281227-4281246 Msa0869990:intron 30.0%
TCAAATGTCATCCTAATGTA+TGG + chr6_1:4281520-4281539 Msa0869990:intron 30.0%
! CGAAATTGATTTCCTCTATA+AGG + chr6_1:4281557-4281576 Msa0869990:intron 30.0%
TCTTGTATCGTTGAATTTGA+TGG + chr6_1:4281666-4281685 Msa0869990:exon 30.0%
! TGAGTATAATGGTCTTCTTT+TGG + chr6_1:4287981-4288000 Msa0869990:CDS 30.0%
! GAGTATAATGGTCTTCTTTT+GGG + chr6_1:4287982-4288001 Msa0869990:CDS 30.0%
! AGTATAATGGTCTTCTTTTG+GGG + chr6_1:4287983-4288002 Msa0869990:CDS 30.0%
CATGAATATGTTCATATCCT+TGG - chr6_1:4288026-4288045 None:intergenic 30.0%
TCATTCAGATGCAATTTAAG+TGG - chr6_1:4288101-4288120 None:intergenic 30.0%
ATCTGAACACTATCTAACAA+AGG - chr6_1:4288201-4288220 None:intergenic 30.0%
AAGTCAACAACCCAAATTTA+AGG + chr6_1:4288303-4288322 Msa0869990:three_prime_UTR 30.0%
TGCATAGGTTCCTTAAATTT+GGG - chr6_1:4288316-4288335 None:intergenic 30.0%
TTGCATAGGTTCCTTAAATT+TGG - chr6_1:4288317-4288336 None:intergenic 30.0%
ATCACATGACTAATTTAGAG+AGG - chr6_1:4288588-4288607 None:intergenic 30.0%
!!! TGTGATCCACATGTTTTAAT+AGG + chr6_1:4288602-4288621 Msa0869990:intron 30.0%
! GTTTTGCCTATTAAAACATG+TGG - chr6_1:4288611-4288630 None:intergenic 30.0%
! AGACTTTTCTGAGTTCTTAT+AGG + chr6_1:4288796-4288815 Msa0869990:intron 30.0%
TTCATGTTTGTATTTGGAAG+GGG + chr6_1:4288921-4288940 Msa0869990:intron 30.0%
! AGTAACATAGTTTTTGACAG+TGG - chr6_1:4289028-4289047 None:intergenic 30.0%
!! CTATGTTACTTGTCTTGTTT+AGG + chr6_1:4289038-4289057 Msa0869990:three_prime_UTR 30.0%
! ATTTTAAGCCTCTTAAGCAA+TGG - chr6_1:4289177-4289196 None:intergenic 30.0%
ATTGCTTAAGAGGCTTAAAA+TGG + chr6_1:4289176-4289195 Msa0869990:three_prime_UTR 30.0%
TAATATCTTGTGATATGCCA+TGG + chr6_1:4289290-4289309 Msa0869990:three_prime_UTR 30.0%
!!! AGGTTTTGGTTTTATGCAAT+TGG + chr6_1:4289351-4289370 Msa0869990:three_prime_UTR 30.0%
TATGTAAACGTGAAGATGAA+AGG + chr6_1:4289525-4289544 Msa0869990:three_prime_UTR 30.0%
TTCTCATTGTGATACTCATT+TGG - chr6_1:4289757-4289776 None:intergenic 30.0%
! TTCATTGGTCTAATTCTTCT+TGG + chr6_1:4289826-4289845 Msa0869990:three_prime_UTR 30.0%
ATCTTACTATTAAGGTCCTA+TGG + chr6_1:4289989-4290008 Msa0869990:three_prime_UTR 30.0%
TCTTACTATTAAGGTCCTAT+GGG + chr6_1:4289990-4290009 Msa0869990:three_prime_UTR 30.0%
TTAAATTGGTTGTCCAAACA+AGG - chr6_1:4290147-4290166 None:intergenic 30.0%
GTGAATTATCTCATTTCAAC+CGG + chr6_1:4290206-4290225 Msa0869990:three_prime_UTR 30.0%
!!! TTTTTTTCCAAACATGAGTC+AGG + chr6_1:4290231-4290250 Msa0869990:three_prime_UTR 30.0%
ATGACACATGCATACAGTTA+TGG - chr6_1:4279882-4279901 None:intergenic 35.0%
! AACTGTATGCATGTGTCATT+TGG + chr6_1:4279883-4279902 Msa0869990:intron 35.0%
TGTGGTTAGGTAATGTTATG+TGG + chr6_1:4280545-4280564 Msa0869990:intron 35.0%
GGAGCCAGAAAAAAAAAGTT+TGG + chr6_1:4280569-4280588 Msa0869990:intron 35.0%
GCCAGAAAAAAAAAGTTTGG+AGG + chr6_1:4280572-4280591 Msa0869990:intron 35.0%
!!! GCCTCCAAACTTTTTTTTTC+TGG - chr6_1:4280576-4280595 None:intergenic 35.0%
!!! TTTGTGTCCGTTTTAGGTTT+CGG - chr6_1:4280826-4280845 None:intergenic 35.0%
GCATAAAATCTACGCTAAAG+TGG + chr6_1:4281041-4281060 Msa0869990:intron 35.0%
!!! AAGCCTAGTTTTAGTGTATG+GGG + chr6_1:4281228-4281247 Msa0869990:intron 35.0%
ATACCCCATACACTAAAACT+AGG - chr6_1:4281234-4281253 None:intergenic 35.0%
!!! AAGCTATTTTTCCACATGAG+TGG + chr6_1:4281324-4281343 Msa0869990:intron 35.0%
CCTTACGAGTTAAATATGAC+TGG - chr6_1:4281588-4281607 None:intergenic 35.0%
CCAGTCATATTTAACTCGTA+AGG + chr6_1:4281585-4281604 Msa0869990:intron 35.0%
TGTTGGAATGAATGAGGATA+TGG - chr6_1:4281817-4281836 None:intergenic 35.0%
GCTATATGTTGGAATGAATG+AGG - chr6_1:4281823-4281842 None:intergenic 35.0%
CATTCCAACATATAGCCAAA+AGG + chr6_1:4281827-4281846 Msa0869990:intron 35.0%
!! TTAGCCTTTTGGCTATATGT+TGG - chr6_1:4281834-4281853 None:intergenic 35.0%
!! CCTTAACAAACTTAGCCTTT+TGG - chr6_1:4281845-4281864 None:intergenic 35.0%
!! CCAAAAGGCTAAGTTTGTTA+AGG + chr6_1:4281842-4281861 Msa0869990:intron 35.0%
GACAAATTGATTGAAGATGC+TGG + chr6_1:4282098-4282117 Msa0869990:intron 35.0%
ATTTGTGTAGCTACTTGTGA+AGG + chr6_1:4282125-4282144 Msa0869990:intron 35.0%
! CTAATGTTGCTGTTAGTTCT+TGG - chr6_1:4282154-4282173 None:intergenic 35.0%
AGAACTAACAGCAACATTAG+TGG + chr6_1:4282154-4282173 Msa0869990:intron 35.0%
TTTGATTCCATTGAAGGCTT+TGG + chr6_1:4282182-4282201 Msa0869990:intron 35.0%
AAACTTGTCACCAATGATGA+TGG + chr6_1:4282257-4282276 Msa0869990:intron 35.0%
ATGTCTTTACAAGACCTTGT+TGG - chr6_1:4282338-4282357 None:intergenic 35.0%
TCAATAGCCTCATGAATATG+AGG + chr6_1:4282610-4282629 Msa0869990:intron 35.0%
CCTAAATCCTCATATTCATG+AGG - chr6_1:4282620-4282639 None:intergenic 35.0%
CCTCATGAATATGAGGATTT+AGG + chr6_1:4282617-4282636 Msa0869990:intron 35.0%
GAAGTTGTGAAGAGAGAAAT+AGG + chr6_1:4282659-4282678 Msa0869990:intron 35.0%
TTGTTTGGTACAAGAGAGAA+AGG + chr6_1:4282737-4282756 Msa0869990:intron 35.0%
GCACAAAAATGTAGAGTATG+TGG - chr6_1:4283020-4283039 None:intergenic 35.0%
TTGAATGAAAAGAGAACGAG+GGG + chr6_1:4283138-4283157 Msa0869990:intron 35.0%
!! TTGGTAGTGAAGAGAAATAG+AGG - chr6_1:4283221-4283240 None:intergenic 35.0%
ATTTCTCTTCACTACCAAAC+AGG + chr6_1:4283223-4283242 Msa0869990:intron 35.0%
TGTTTGGTTGGGTAGAAATA+GGG - chr6_1:4283297-4283316 None:intergenic 35.0%
TTGTTTGGTTGGGTAGAAAT+AGG - chr6_1:4283298-4283317 None:intergenic 35.0%
CAACTTCTTTCACTAGGAAT+TGG - chr6_1:4283357-4283376 None:intergenic 35.0%
GATAGATAAACAAGCTTCCA+CGG + chr6_1:4283383-4283402 Msa0869990:intron 35.0%
TGTTAACTTATTTGATGCCG+TGG - chr6_1:4283403-4283422 None:intergenic 35.0%
AATTACACTCACATCCCTTA+AGG - chr6_1:4283539-4283558 None:intergenic 35.0%
AGATTTGAATAAGAAGTCGG+AGG - chr6_1:4283681-4283700 None:intergenic 35.0%
AAAAAGAGTTTACCGTTCGT+TGG + chr6_1:4284384-4284403 Msa0869990:intron 35.0%
TTTGGCCCCCTATAAAAAAA+TGG + chr6_1:4284529-4284548 Msa0869990:intron 35.0%
GACAATTTCTCAATCTCTGA+TGG + chr6_1:4284611-4284630 Msa0869990:intron 35.0%
TAAAGTGACATGAGGATAGA+AGG + chr6_1:4284636-4284655 Msa0869990:intron 35.0%
AAAGTTACACCATGTCAGTT+TGG - chr6_1:4284679-4284698 None:intergenic 35.0%
! AACTGACATGGTGTAACTTT+TGG + chr6_1:4284679-4284698 Msa0869990:intron 35.0%
ATAAGTGGATCCTTCTTTAG+GGG - chr6_1:4284707-4284726 None:intergenic 35.0%
GATAAGTGGATCCTTCTTTA+GGG - chr6_1:4284708-4284727 None:intergenic 35.0%
TGATAAGTGGATCCTTCTTT+AGG - chr6_1:4284709-4284728 None:intergenic 35.0%
CTCCATTTATCATGTCAGTT+TGG + chr6_1:4284736-4284755 Msa0869990:intron 35.0%
GTCCAAACTGACATGATAAA+TGG - chr6_1:4284741-4284760 None:intergenic 35.0%
GATAGAAGAATGCTGATAAG+TGG - chr6_1:4284782-4284801 None:intergenic 35.0%
! TCTGATGGTGTAAATGACAT+GGG - chr6_1:4284805-4284824 None:intergenic 35.0%
AAAGAGGGTTAAAAGTTAGG+GGG + chr6_1:4284857-4284876 Msa0869990:intron 35.0%
CTACGGTGAAAAAGTAACTA+TGG - chr6_1:4285113-4285132 None:intergenic 35.0%
!!! TACTTTTTCACCGTAGTTTG+TGG + chr6_1:4285117-4285136 Msa0869990:intron 35.0%
ATTGTAAGAGTAAACTGCGA+CGG - chr6_1:4285157-4285176 None:intergenic 35.0%
!! ATGTTTTTATGAGAATCGGG+TGG + chr6_1:4285221-4285240 Msa0869990:intron 35.0%
!! TGTTTTTATGAGAATCGGGT+GGG + chr6_1:4285222-4285241 Msa0869990:intron 35.0%
TGATGTATAGTGCCATGTAT+AGG - chr6_1:4285283-4285302 None:intergenic 35.0%
ATACATGGCACTATACATCA+TGG + chr6_1:4285283-4285302 Msa0869990:intron 35.0%
!! TAGTCATTTTAGTCCCTGAA+TGG + chr6_1:4285352-4285371 Msa0869990:intron 35.0%
!! AGTCATTTTAGTCCCTGAAT+GGG + chr6_1:4285353-4285372 Msa0869990:intron 35.0%
ACTAACGGAGTATACATTCA+GGG + chr6_1:4285456-4285475 Msa0869990:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + chr6_1:4285519-4285538 Msa0869990:intron 35.0%
AGTAGAAAAATCATGAGTCG+TGG + chr6_1:4285759-4285778 Msa0869990:intron 35.0%
ATGACACATGCATACAGTTA+TGG - chr6_1:4279882-4279901 None:intergenic 35.0%
! AACTGTATGCATGTGTCATT+TGG + chr6_1:4279883-4279902 Msa0869990:intron 35.0%
TGTGGTTAGGTAATGTTATG+TGG + chr6_1:4280545-4280564 Msa0869990:intron 35.0%
GGAGCCAGAAAAAAAAAGTT+TGG + chr6_1:4280569-4280588 Msa0869990:intron 35.0%
GCCAGAAAAAAAAAGTTTGG+AGG + chr6_1:4280572-4280591 Msa0869990:intron 35.0%
!!! GCCTCCAAACTTTTTTTTTC+TGG - chr6_1:4280576-4280595 None:intergenic 35.0%
!!! TTTGTGTCCGTTTTAGGTTT+CGG - chr6_1:4280826-4280845 None:intergenic 35.0%
GCATAAAATCTACGCTAAAG+TGG + chr6_1:4281041-4281060 Msa0869990:intron 35.0%
!!! AAGCCTAGTTTTAGTGTATG+GGG + chr6_1:4281228-4281247 Msa0869990:intron 35.0%
ATACCCCATACACTAAAACT+AGG - chr6_1:4281234-4281253 None:intergenic 35.0%
!!! AAGCTATTTTTCCACATGAG+TGG + chr6_1:4281324-4281343 Msa0869990:intron 35.0%
CCTTACGAGTTAAATATGAC+TGG - chr6_1:4281588-4281607 None:intergenic 35.0%
CCAGTCATATTTAACTCGTA+AGG + chr6_1:4281585-4281604 Msa0869990:intron 35.0%
TATGTCTCTTTATAGGTCCA+TGG + chr6_1:4287919-4287938 Msa0869990:intron 35.0%
TATGAACATATTCATGTCCG+AGG + chr6_1:4288030-4288049 Msa0869990:three_prime_UTR 35.0%
!!! ATTGGTTTTGCAACAGTTTG+AGG + chr6_1:4288271-4288290 Msa0869990:intron 35.0%
!!! TTGGTTTTGCAACAGTTTGA+GGG + chr6_1:4288272-4288291 Msa0869990:intron 35.0%
TTTAAGGAACCTATGCAATG+AGG + chr6_1:4288319-4288338 Msa0869990:three_prime_UTR 35.0%
GGTATACACTTTGTCTCATT+TGG + chr6_1:4288394-4288413 Msa0869990:intron 35.0%
GAACAAAACACAATCAAGAG+AGG - chr6_1:4288468-4288487 None:intergenic 35.0%
!! CTCTTGATTGTGTTTTGTTC+TGG + chr6_1:4288468-4288487 Msa0869990:intron 35.0%
TGGAAAACTAAAAAAGGTCG+AGG + chr6_1:4288488-4288507 Msa0869990:intron 35.0%
GTAGTAATATTCAACTTCGC+CGG - chr6_1:4288988-4289007 None:intergenic 35.0%
AAGCCTACTAGTTAGCATTT+AGG + chr6_1:4289063-4289082 Msa0869990:three_prime_UTR 35.0%
AGCCTACTAGTTAGCATTTA+GGG + chr6_1:4289064-4289083 Msa0869990:three_prime_UTR 35.0%
! ATGGTGGAATATACACATCA+TGG - chr6_1:4289158-4289177 None:intergenic 35.0%
ATATTCCACCATTGCTTAAG+AGG + chr6_1:4289166-4289185 Msa0869990:three_prime_UTR 35.0%
TGGTGTTTAATGTATGACCA+TGG + chr6_1:4289327-4289346 Msa0869990:three_prime_UTR 35.0%
GTTTAATGTATGACCATGGT+AGG + chr6_1:4289331-4289350 Msa0869990:three_prime_UTR 35.0%
CATAAAACCAAAACCTACCA+TGG - chr6_1:4289347-4289366 None:intergenic 35.0%
GATGCAAATTACTTTATGGG+TGG - chr6_1:4289439-4289458 None:intergenic 35.0%
CCAATGAAATGCATACTGAA+GGG - chr6_1:4289814-4289833 None:intergenic 35.0%
ACCAATGAAATGCATACTGA+AGG - chr6_1:4289815-4289834 None:intergenic 35.0%
TCTTCTTGGAGTGAATAATG+TGG + chr6_1:4289840-4289859 Msa0869990:three_prime_UTR 35.0%
AAACAAGGTGTAAGTGCATA+GGG - chr6_1:4290132-4290151 None:intergenic 35.0%
GCTTCTAACATATGCATTTG+TGG + chr6_1:4290173-4290192 Msa0869990:three_prime_UTR 35.0%
ACACATGCATACAGTTATGG+CGG - chr6_1:4279879-4279898 None:intergenic 40.0%
TGTTTGGCAAACCGCAAATT+TGG + chr6_1:4280124-4280143 Msa0869990:intron 40.0%
GGTTAGGTAATGTTATGTGG+CGG + chr6_1:4280548-4280567 Msa0869990:intron 40.0%
TACACCACTTTGCTGGAATT+TGG + chr6_1:4280681-4280700 Msa0869990:intron 40.0%
TGATCCAAATTCCAGCAAAG+TGG - chr6_1:4280688-4280707 None:intergenic 40.0%
TACACCACTTTACGGGAATT+TGG + chr6_1:4280795-4280814 Msa0869990:intron 40.0%
TGATCCAAATTCCCGTAAAG+TGG - chr6_1:4280802-4280821 None:intergenic 40.0%
GGATCAACCGAAACCTAAAA+CGG + chr6_1:4280816-4280835 Msa0869990:intron 40.0%
GAGATAAACATTACCAGTGG+CGG - chr6_1:4280939-4280958 None:intergenic 40.0%
! AAAGGGTAGGTTGGGAAATT+TGG - chr6_1:4281940-4281959 None:intergenic 40.0%
TCATTCCATGCAGCAAAAAC+TGG + chr6_1:4282068-4282087 Msa0869990:intron 40.0%
CATTCCATGCAGCAAAAACT+GGG + chr6_1:4282069-4282088 Msa0869990:intron 40.0%
CACAAGTAGCTACACAAATG+AGG - chr6_1:4282124-4282143 None:intergenic 40.0%
ACTCTTTCCAAAGCCTTCAA+TGG - chr6_1:4282192-4282211 None:intergenic 40.0%
! ATGAGGATTTAGGGTGTGTT+TGG + chr6_1:4282627-4282646 Msa0869990:intron 40.0%
GAGTTTGAGAAGAGAGAAAG+AGG + chr6_1:4282689-4282708 Msa0869990:intron 40.0%
! AAGAGAACGAGGGGTATAAT+AGG + chr6_1:4283147-4283166 Msa0869990:intron 40.0%
GAGAGAGGCTAAAATGCTAT+GGG - chr6_1:4283199-4283218 None:intergenic 40.0%
TGAAGAGAAATAGAGGAGAG+AGG - chr6_1:4283214-4283233 None:intergenic 40.0%
GATTGTGAACTTCTCCTGTT+TGG - chr6_1:4283240-4283259 None:intergenic 40.0%
AGCACTCTGTTTGTTTGGTT+GGG - chr6_1:4283308-4283327 None:intergenic 40.0%
GTCTGTAGTGTATGTAGATG+AGG + chr6_1:4283329-4283348 Msa0869990:intron 40.0%
GCAAGACAACTTCTTTCACT+AGG - chr6_1:4283363-4283382 None:intergenic 40.0%
TGGAGTTATCATACAAAGGG+AGG + chr6_1:4283432-4283451 Msa0869990:intron 40.0%
TTGCGATCGATGAGAAACTT+TGG - chr6_1:4283731-4283750 None:intergenic 40.0%
TTGCGCACGTGAAAGATATT+TGG + chr6_1:4284226-4284245 Msa0869990:intron 40.0%
GATTAATCCTTCTACACACG+TGG - chr6_1:4284418-4284437 None:intergenic 40.0%
! TGATGGTGTAAAGTGACATG+AGG + chr6_1:4284628-4284647 Msa0869990:intron 40.0%
GATAGAAGGATGCTGATAAG+TGG + chr6_1:4284650-4284669 Msa0869990:intron 40.0%
TAAGTGGATCCTTCTTTAGG+GGG - chr6_1:4284706-4284725 None:intergenic 40.0%
GAAGGATCCACTTATCAGTT+TGG + chr6_1:4284712-4284731 Msa0869990:intron 40.0%
ATGGAGTCCAAACTGATAAG+TGG - chr6_1:4284722-4284741 None:intergenic 40.0%
! CTGATGGTGTAAATGACATG+GGG - chr6_1:4284804-4284823 None:intergenic 40.0%
! CTCTGATGGTGTAAATGACA+TGG - chr6_1:4284806-4284825 None:intergenic 40.0%
GGCAGACATAAACCTATACA+TGG + chr6_1:4285268-4285287 Msa0869990:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr6_1:4285441-4285460 Msa0869990:intron 40.0%
GACTAACGGAGTATACATTC+AGG + chr6_1:4285455-4285474 Msa0869990:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - chr6_1:4285595-4285614 None:intergenic 40.0%
ACACATGCATACAGTTATGG+CGG - chr6_1:4279879-4279898 None:intergenic 40.0%
TGTTTGGCAAACCGCAAATT+TGG + chr6_1:4280124-4280143 Msa0869990:intron 40.0%
GGTTAGGTAATGTTATGTGG+CGG + chr6_1:4280548-4280567 Msa0869990:intron 40.0%
TACACCACTTTGCTGGAATT+TGG + chr6_1:4280681-4280700 Msa0869990:intron 40.0%
TGATCCAAATTCCAGCAAAG+TGG - chr6_1:4280688-4280707 None:intergenic 40.0%
TACACCACTTTACGGGAATT+TGG + chr6_1:4280795-4280814 Msa0869990:intron 40.0%
TGATCCAAATTCCCGTAAAG+TGG - chr6_1:4280802-4280821 None:intergenic 40.0%
GGATCAACCGAAACCTAAAA+CGG + chr6_1:4280816-4280835 Msa0869990:intron 40.0%
GAGATAAACATTACCAGTGG+CGG - chr6_1:4280939-4280958 None:intergenic 40.0%
!! ATTTGGGTTGTTGACTTTCC+AGG - chr6_1:4288300-4288319 None:intergenic 40.0%
AGAGTAACTTCAAGTCAGTC+AGG + chr6_1:4288354-4288373 Msa0869990:three_prime_UTR 40.0%
GAGTAACTTCAAGTCAGTCA+GGG + chr6_1:4288355-4288374 Msa0869990:three_prime_UTR 40.0%
TGAGACAAAGTGTATACCCT+AGG - chr6_1:4288392-4288411 None:intergenic 40.0%
GCCTACTAGTTAGCATTTAG+GGG + chr6_1:4289065-4289084 Msa0869990:three_prime_UTR 40.0%
CCTACTAGTTAGCATTTAGG+GGG + chr6_1:4289066-4289085 Msa0869990:three_prime_UTR 40.0%
ATGTGACACTGCATGTCAAA+GGG + chr6_1:4289097-4289116 Msa0869990:three_prime_UTR 40.0%
TTAAGCCTCTTAAGCAATGG+TGG - chr6_1:4289174-4289193 None:intergenic 40.0%
! TGTATGACCATGGTAGGTTT+TGG + chr6_1:4289337-4289356 Msa0869990:three_prime_UTR 40.0%
GCATGCATTACTCAAGACAT+GGG - chr6_1:4289493-4289512 None:intergenic 40.0%
AGCATGCATTACTCAAGACA+TGG - chr6_1:4289494-4289513 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr6_1:4289655-4289674 Msa0869990:three_prime_UTR 40.0%
! GAAGTATCTCTTGATGGTTC+AGG + chr6_1:4289677-4289696 Msa0869990:three_prime_UTR 40.0%
CCCTTCAGTATGCATTTCAT+TGG + chr6_1:4289811-4289830 Msa0869990:three_prime_UTR 40.0%
TCTTGGAGTGAATAATGTGG+AGG + chr6_1:4289843-4289862 Msa0869990:three_prime_UTR 40.0%
TATTAAGGTCCTATGGGATG+AGG + chr6_1:4289996-4290015 Msa0869990:three_prime_UTR 40.0%
CGTTTAGGAAGGATACTAGT+TGG - chr6_1:4290102-4290121 None:intergenic 40.0%
CAAACAAGGTGTAAGTGCAT+AGG - chr6_1:4290133-4290152 None:intergenic 40.0%
CTATGCACTTACACCTTGTT+TGG + chr6_1:4290131-4290150 Msa0869990:three_prime_UTR 40.0%
ATGCATTTGTGGCACATACA+AGG + chr6_1:4290184-4290203 Msa0869990:three_prime_UTR 40.0%
TTCGATTCCTGACTCATGTT+TGG - chr6_1:4290241-4290260 None:intergenic 40.0%
AACCTCTGACCACATATCAA+AGG + chr6_1:4290259-4290278 Msa0869990:three_prime_UTR 40.0%
ACCTCTGACCACATATCAAA+GGG + chr6_1:4290260-4290279 Msa0869990:three_prime_UTR 40.0%
TGGACCACTACACCACTTTA+CGG + chr6_1:4280787-4280806 Msa0869990:intron 45.0%
ATTCCCGTAAAGTGGTGTAG+TGG - chr6_1:4280794-4280813 None:intergenic 45.0%
!!! TTATTTTTCTGGGTGGGCTG+TGG + chr6_1:4280890-4280909 Msa0869990:intron 45.0%
CTACGCTAAAGTGGTGTGTA+AGG + chr6_1:4281050-4281069 Msa0869990:intron 45.0%
!! AAGAGTGTTGTCCACTCATG+TGG - chr6_1:4281338-4281357 None:intergenic 45.0%
! GAATTTGATGGAGCATCCAG+TGG + chr6_1:4281678-4281697 Msa0869990:exon 45.0%
CTGTTATCCGTTCTGCAGAT+GGG + chr6_1:4281727-4281746 Msa0869990:CDS 45.0%
! ACTTCCCAGTTTTTGCTGCA+TGG - chr6_1:4282076-4282095 None:intergenic 45.0%
!! AGGCTTTGGAAAGAGTAGTG+AGG + chr6_1:4282196-4282215 Msa0869990:intron 45.0%
!! GGCTTTGGAAAGAGTAGTGA+GGG + chr6_1:4282197-4282216 Msa0869990:intron 45.0%
!! AGTGAGGGAGCAGTTTTATC+AGG + chr6_1:4282212-4282231 Msa0869990:intron 45.0%
! TGGTATTTTGCTCGTGTACG+TGG - chr6_1:4283000-4283019 None:intergenic 45.0%
GGAGAGAGGCTAAAATGCTA+TGG - chr6_1:4283200-4283219 None:intergenic 45.0%
CAGCACTCTGTTTGTTTGGT+TGG - chr6_1:4283309-4283328 None:intergenic 45.0%
CAACCAAACAAACAGAGTGC+TGG + chr6_1:4283307-4283326 Msa0869990:intron 45.0%
AGACCAGCACTCTGTTTGTT+TGG - chr6_1:4283313-4283332 None:intergenic 45.0%
GAATAAGAAGTCGGAGGACT+AGG - chr6_1:4283675-4283694 None:intergenic 45.0%
AAGTGGAGTCCAAACTGACA+TGG + chr6_1:4284667-4284686 Msa0869990:intron 45.0%
! AAGTGGATCCTTCTTTAGGG+GGG - chr6_1:4284705-4284724 None:intergenic 45.0%
GTTTGGACACCATGCAAGTT+TGG + chr6_1:4284753-4284772 Msa0869990:intron 45.0%
AAGTGGAGTCCAAACTTGCA+TGG - chr6_1:4284765-4284784 None:intergenic 45.0%
GTCAATTTCTCGGTCTCTGA+TGG - chr6_1:4284820-4284839 None:intergenic 45.0%
! AGCGTGTGTGGTAGTGTTAA+AGG - chr6_1:4285084-4285103 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+GGG - chr6_1:4285368-4285387 None:intergenic 45.0%
TGACGAATCATCTCCCATTC+AGG - chr6_1:4285369-4285388 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + chr6_1:4285412-4285431 Msa0869990:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + chr6_1:4285424-4285443 Msa0869990:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - chr6_1:4285428-4285447 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - chr6_1:4285590-4285609 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - chr6_1:4285591-4285610 None:intergenic 45.0%
ATTCCCGTAAAGTGGTGTAG+TGG - chr6_1:4280794-4280813 None:intergenic 45.0%
!!! TTATTTTTCTGGGTGGGCTG+TGG + chr6_1:4280890-4280909 Msa0869990:intron 45.0%
CTACGCTAAAGTGGTGTGTA+AGG + chr6_1:4281050-4281069 Msa0869990:intron 45.0%
!! AAGAGTGTTGTCCACTCATG+TGG - chr6_1:4281338-4281357 None:intergenic 45.0%
! GAATTTGATGGAGCATCCAG+TGG + chr6_1:4281678-4281697 Msa0869990:exon 45.0%
CTGTTATCCGTTCTGCAGAT+GGG + chr6_1:4281727-4281746 Msa0869990:CDS 45.0%
TTGTTTGAGTGCCAAGTCCT+TGG - chr6_1:4287951-4287970 None:intergenic 45.0%
CTGAAAGAAGCTAGCAACCA+AGG + chr6_1:4288006-4288025 Msa0869990:exon 45.0%
AAACAAGCTGAGAGTCACCT+CGG - chr6_1:4288050-4288069 None:intergenic 45.0%
! CTCTCAGCTTGTTTGCAATC+AGG + chr6_1:4288056-4288075 Msa0869990:three_prime_UTR 45.0%
GCAAATCGCGGCAAAAATCT+TGG + chr6_1:4288758-4288777 Msa0869990:three_prime_UTR 45.0%
AATCGCGGCAAAAATCTTGG+AGG + chr6_1:4288761-4288780 Msa0869990:three_prime_UTR 45.0%
CCCCCTAAATGCTAACTAGT+AGG - chr6_1:4289069-4289088 None:intergenic 45.0%
CATGTGACACTGCATGTCAA+AGG + chr6_1:4289096-4289115 Msa0869990:three_prime_UTR 45.0%
TATGGGTGGTGATTGACCTA+CGG - chr6_1:4289425-4289444 None:intergenic 45.0%
CATTACTCAAGACATGGGAC+AGG - chr6_1:4289488-4289507 None:intergenic 45.0%
CCATCAAGAGATACTTCCTC+CGG - chr6_1:4289674-4289693 None:intergenic 45.0%
!! TCTCTTGATGGTTCAGGTTG+TGG + chr6_1:4289683-4289702 Msa0869990:three_prime_UTR 45.0%
AGCTGGGTTTCTGAACATAG+TGG + chr6_1:4289709-4289728 Msa0869990:three_prime_UTR 45.0%
!!! ATTGAATTATTTAAATTTTT+CGG + chr6_1:4280649-4280668 Msa0869990:intron 5.0%
!! AATTTAAATAATTCAATTAT+AGG - chr6_1:4280646-4280665 None:intergenic 5.0%
!!! ATTGAATTATTTAAATTTTT+CGG + chr6_1:4280649-4280668 Msa0869990:intron 5.0%
!! ACTTAAATTTATATATAAAA+AGG - chr6_1:4282912-4282931 None:intergenic 5.0%
!!! ATTGAATTATTTAAATTTTT+CGG + chr6_1:4280649-4280668 Msa0869990:intron 5.0%
!! AATTTAAATAATTCAATTAT+AGG - chr6_1:4280646-4280665 None:intergenic 5.0%
!!! ATTGAATTATTTAAATTTTT+CGG + chr6_1:4280649-4280668 Msa0869990:intron 5.0%
GAGTCACTACACCACTTTGC+TGG + chr6_1:4280674-4280693 Msa0869990:intron 50.0%
GGACCACTACACCACTTTAC+GGG + chr6_1:4280788-4280807 Msa0869990:intron 50.0%
TGACTGGCAACGCCTTATAG+AGG - chr6_1:4281572-4281591 None:intergenic 50.0%
CATCCAGTGGAAATCCTGGA+AGG + chr6_1:4281691-4281710 Msa0869990:CDS 50.0%
AGACCTTCCAGGATTTCCAC+TGG - chr6_1:4281697-4281716 None:intergenic 50.0%
AGTGGAAATCCTGGAAGGTC+TGG + chr6_1:4281696-4281715 Msa0869990:CDS 50.0%
GCTGTTATCCGTTCTGCAGA+TGG + chr6_1:4281726-4281745 Msa0869990:CDS 50.0%
! GGGTAGGTTGGGAAATTTGG+AGG - chr6_1:4281937-4281956 None:intergenic 50.0%
GTGGCACACAAACCAACGAA+CGG - chr6_1:4284399-4284418 None:intergenic 50.0%
TTGTGTGCCACGTGTGTAGA+AGG + chr6_1:4284408-4284427 Msa0869990:intron 50.0%
! ACTTTTGGCCCCCCTAAAGA+AGG + chr6_1:4284694-4284713 Msa0869990:intron 50.0%
CAAAGGTGACTGATGAGCAG+AGG - chr6_1:4285019-4285038 None:intergenic 50.0%
TATGAGAATCGGGTGGGAGT+TGG + chr6_1:4285228-4285247 Msa0869990:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG + chr6_1:4285423-4285442 Msa0869990:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - chr6_1:4285429-4285448 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + chr6_1:4285579-4285598 Msa0869990:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + chr6_1:4285580-4285599 Msa0869990:intron 50.0%
GAGTCGTGGAAACAACAGAG+AGG + chr6_1:4285773-4285792 Msa0869990:intron 50.0%
GAGTCACTACACCACTTTGC+TGG + chr6_1:4280674-4280693 Msa0869990:intron 50.0%
TGGGCCACTACACCACTTTA+CGG + chr6_1:4286875-4286894 Msa0869990:intron 50.0%
TGACTGGCAACGCCTTATAG+AGG - chr6_1:4281572-4281591 None:intergenic 50.0%
CATCCAGTGGAAATCCTGGA+AGG + chr6_1:4281691-4281710 Msa0869990:CDS 50.0%
AGACCTTCCAGGATTTCCAC+TGG - chr6_1:4281697-4281716 None:intergenic 50.0%
AGTGGAAATCCTGGAAGGTC+TGG + chr6_1:4281696-4281715 Msa0869990:CDS 50.0%
GCTGTTATCCGTTCTGCAGA+TGG + chr6_1:4281726-4281745 Msa0869990:CDS 50.0%
TGCAACAGTTTGAGGGTTCC+TGG + chr6_1:4288279-4288298 Msa0869990:intron 50.0%
GAACCTATGCAATGAGGCTG+TGG + chr6_1:4288325-4288344 Msa0869990:three_prime_UTR 50.0%
TCAGGGTCGAACATGTTCCT+AGG + chr6_1:4288372-4288391 Msa0869990:three_prime_UTR 50.0%
CAGGGTCGAACATGTTCCTA+GGG + chr6_1:4288373-4288392 Msa0869990:three_prime_UTR 50.0%
GCTGATGCTCAAGCAAATCG+CGG + chr6_1:4288746-4288765 Msa0869990:three_prime_UTR 50.0%
TATGCCATGGCGAACATGAC+TGG + chr6_1:4289303-4289322 Msa0869990:three_prime_UTR 50.0%
GAGCAAACTGAGAGAACCGT+AGG + chr6_1:4289406-4289425 Msa0869990:three_prime_UTR 50.0%
!! CCGGAGGAAGTATCTCTTGA+TGG + chr6_1:4289671-4289690 Msa0869990:three_prime_UTR 50.0%
!! GTTCAGGTTGTGGAGTAGCT+GGG + chr6_1:4289693-4289712 Msa0869990:three_prime_UTR 50.0%
! ACTGAAGGGACTGACTTCTC+TGG - chr6_1:4289800-4289819 None:intergenic 50.0%
CAATGGATGCCTCATCCCAT+AGG - chr6_1:4290008-4290027 None:intergenic 50.0%
AGGGTGGAACACGTTTAGGA+AGG - chr6_1:4290113-4290132 None:intergenic 50.0%
GCATAGGGTGGAACACGTTT+AGG - chr6_1:4290117-4290136 None:intergenic 50.0%
CAAGGTGTAAGTGCATAGGG+TGG - chr6_1:4290129-4290148 None:intergenic 50.0%
CCCCTTTGATATGTGGTCAG+AGG - chr6_1:4290264-4290283 None:intergenic 50.0%
! GGAGCATCCAGTGGAAATCC+TGG + chr6_1:4281687-4281706 Msa0869990:CDS 55.0%
AATCCTGGAAGGTCTGGTGC+AGG + chr6_1:4281702-4281721 Msa0869990:CDS 55.0%
TCCGTTCTGCAGATGGGAGT+CGG + chr6_1:4281733-4281752 Msa0869990:CDS 55.0%
AAGTCGGAGGACTAGGCGAA+AGG - chr6_1:4283668-4283687 None:intergenic 55.0%
GGGCCACTACACCACTTTAC+GGG + chr6_1:4286876-4286895 Msa0869990:intron 55.0%
! GGAGCATCCAGTGGAAATCC+TGG + chr6_1:4281687-4281706 Msa0869990:CDS 55.0%
AATCCTGGAAGGTCTGGTGC+AGG + chr6_1:4281702-4281721 Msa0869990:CDS 55.0%
TCCGTTCTGCAGATGGGAGT+CGG + chr6_1:4281733-4281752 Msa0869990:CDS 55.0%
GCTCCACAGCCTCATTGCAT+AGG - chr6_1:4288331-4288350 None:intergenic 55.0%
CCATCCAGTCATGTTCGCCA+TGG - chr6_1:4289310-4289329 None:intergenic 55.0%
CCATGGCGAACATGACTGGA+TGG + chr6_1:4289307-4289326 Msa0869990:three_prime_UTR 55.0%
!! GGTTCAGGTTGTGGAGTAGC+TGG + chr6_1:4289692-4289711 Msa0869990:three_prime_UTR 55.0%
CCCGACTCCCATCTGCAGAA+CGG - chr6_1:4281737-4281756 None:intergenic 60.0%
CCGTTCTGCAGATGGGAGTC+GGG + chr6_1:4281734-4281753 Msa0869990:CDS 60.0%
CCCGACTCCCATCTGCAGAA+CGG - chr6_1:4281737-4281756 None:intergenic 60.0%
CCGTTCTGCAGATGGGAGTC+GGG + chr6_1:4281734-4281753 Msa0869990:CDS 60.0%
TAGGTCCATGGCGTCAGCCA+AGG + chr6_1:4287931-4287950 Msa0869990:intron 60.0%
CAAGTCCTTGGCTGACGCCA+TGG - chr6_1:4287939-4287958 None:intergenic 60.0%
CATGGCGTCAGCCAAGGACT+TGG + chr6_1:4287937-4287956 Msa0869990:CDS 60.0%
GCTCCTGCACCAGACCTTCC+AGG - chr6_1:4281708-4281727 None:intergenic 65.0%
GCTCCTGCACCAGACCTTCC+AGG - chr6_1:4281708-4281727 None:intergenic 65.0%
!! AGCCCTTCGTGGGCTGGGGT+GGG - chr6_1:4280916-4280935 None:intergenic 70.0%
! CCAGTGGCGGAGCCCTTCGT+GGG - chr6_1:4280926-4280945 None:intergenic 70.0%
! ACCAGTGGCGGAGCCCTTCG+TGG - chr6_1:4280927-4280946 None:intergenic 70.0%
!! AGCCCTTCGTGGGCTGGGGT+GGG - chr6_1:4280916-4280935 None:intergenic 70.0%
! CCAGTGGCGGAGCCCTTCGT+GGG - chr6_1:4280926-4280945 None:intergenic 70.0%
! ACCAGTGGCGGAGCCCTTCG+TGG - chr6_1:4280927-4280946 None:intergenic 70.0%
TGGCCCACCCCAGCCCACGA+AGG + chr6_1:4280910-4280929 Msa0869990:intron 75.0%
GGCCCACCCCAGCCCACGAA+GGG + chr6_1:4280911-4280930 Msa0869990:intron 75.0%
!! GAGCCCTTCGTGGGCTGGGG+TGG - chr6_1:4280917-4280936 None:intergenic 75.0%
! GCGGAGCCCTTCGTGGGCTG+GGG - chr6_1:4280920-4280939 None:intergenic 75.0%
GGCGGAGCCCTTCGTGGGCT+GGG - chr6_1:4280921-4280940 None:intergenic 75.0%
TGGCGGAGCCCTTCGTGGGC+TGG - chr6_1:4280922-4280941 None:intergenic 75.0%
CCCACGAAGGGCTCCGCCAC+TGG + chr6_1:4280923-4280942 Msa0869990:intron 75.0%
TGGCCCACCCCAGCCCACGA+AGG + chr6_1:4280910-4280929 Msa0869990:intron 75.0%
GGCCCACCCCAGCCCACGAA+GGG + chr6_1:4280911-4280930 Msa0869990:intron 75.0%
!! GAGCCCTTCGTGGGCTGGGG+TGG - chr6_1:4280917-4280936 None:intergenic 75.0%
! GCGGAGCCCTTCGTGGGCTG+GGG - chr6_1:4280920-4280939 None:intergenic 75.0%
GGCGGAGCCCTTCGTGGGCT+GGG - chr6_1:4280921-4280940 None:intergenic 75.0%
TGGCGGAGCCCTTCGTGGGC+TGG - chr6_1:4280922-4280941 None:intergenic 75.0%
CCCACGAAGGGCTCCGCCAC+TGG + chr6_1:4280923-4280942 Msa0869990:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 4279804 4290283 4279804 ID=Msa0869990;Name=Msa0869990
chr6_1 mRNA 4279804 4290283 4279804 ID=Msa0869990-mRNA-1;Parent=Msa0869990;Name=Msa0869990-mRNA-1;_AED=0.30;_eAED=0.30;_QI=63|0.57|0.62|1|0.57|0.62|8|1527|79
chr6_1 exon 4279804 4279811 4279804 ID=Msa0869990-mRNA-1:exon:1392;Parent=Msa0869990-mRNA-1
chr6_1 exon 4281451 4281458 4281451 ID=Msa0869990-mRNA-1:exon:1393;Parent=Msa0869990-mRNA-1
chr6_1 exon 4281638 4281755 4281638 ID=Msa0869990-mRNA-1:exon:1394;Parent=Msa0869990-mRNA-1
chr6_1 exon 4287750 4287842 4287750 ID=Msa0869990-mRNA-1:exon:1395;Parent=Msa0869990-mRNA-1
chr6_1 exon 4287934 4288077 4287934 ID=Msa0869990-mRNA-1:exon:1396;Parent=Msa0869990-mRNA-1
chr6_1 exon 4288287 4288394 4288287 ID=Msa0869990-mRNA-1:exon:1397;Parent=Msa0869990-mRNA-1
chr6_1 exon 4288731 4288782 4288731 ID=Msa0869990-mRNA-1:exon:1398;Parent=Msa0869990-mRNA-1
chr6_1 exon 4288985 4290283 4288985 ID=Msa0869990-mRNA-1:exon:1399;Parent=Msa0869990-mRNA-1
chr6_1 five_prime_UTR 4279804 4279811 4279804 ID=Msa0869990-mRNA-1:five_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 five_prime_UTR 4281451 4281458 4281451 ID=Msa0869990-mRNA-1:five_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 five_prime_UTR 4281638 4281684 4281638 ID=Msa0869990-mRNA-1:five_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 CDS 4281685 4281755 4281685 ID=Msa0869990-mRNA-1:cds;Parent=Msa0869990-mRNA-1
chr6_1 CDS 4287750 4287842 4287750 ID=Msa0869990-mRNA-1:cds;Parent=Msa0869990-mRNA-1
chr6_1 CDS 4287934 4288009 4287934 ID=Msa0869990-mRNA-1:cds;Parent=Msa0869990-mRNA-1
chr6_1 three_prime_UTR 4288010 4288077 4288010 ID=Msa0869990-mRNA-1:three_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 three_prime_UTR 4288287 4288394 4288287 ID=Msa0869990-mRNA-1:three_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 three_prime_UTR 4288731 4288782 4288731 ID=Msa0869990-mRNA-1:three_prime_utr;Parent=Msa0869990-mRNA-1
chr6_1 three_prime_UTR 4288985 4290283 4288985 ID=Msa0869990-mRNA-1:three_prime_utr;Parent=Msa0869990-mRNA-1
Gene Sequence

>Msa0869990

ATGGAGCATCCAGTGGAAATCCTGGAAGGTCTGGTGCAGGAGCTGTTATCCGTTCTGCAGATGGGAGTCGGCGTTCTTGTATCGTTGAATTTGATGGAGCATCCAGTGGAAATCCTGGAAGGTCTGGTGCAGGAGCTGTTATCCGTTCTGCAGATGGGAGTCGGGTCCATGGCGTCAGCCAAGGACTTGGCACTCAAACAAATAATTCTGCTGAGTATAATGGTCTTCTTTTGGGGCTGA
Protein sequence

>Msa0869990

MEHPVEILEGLVQELLSVLQMGVGVLVSLNLMEHPVEILEGLVQELLSVLQMGVGSMASAKDLALKQIILLSIMVFFWG*