Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269970 | RHN80910.1 | 70.500 | 400 | 80 | 5 | 26 | 405 | 27 | 408 | 1.02e-100 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269970 | A0A396JRJ4 | 70.500 | 400 | 80 | 5 | 26 | 405 | 27 | 408 | 4.89e-101 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0269970 | 0.805826 | 1.106462e-49 | -8.615850e-47 |
| Msa0036790 | Msa0269970 | 0.847029 | 1.497413e-59 | -8.615850e-47 |
| Msa0081020 | Msa0269970 | 0.940872 | 1.107314e-100 | -8.615850e-47 |
| Msa0099700 | Msa0269970 | 0.800642 | 1.309476e-48 | -8.615850e-47 |
| Msa0115790 | Msa0269970 | 0.802726 | 4.892516e-49 | -8.615850e-47 |
| Msa0132000 | Msa0269970 | 0.890821 | 6.961658e-74 | -8.615850e-47 |
| Msa0132630 | Msa0269970 | -0.815529 | 8.825170e-52 | -8.615850e-47 |
| Msa0173690 | Msa0269970 | 0.800496 | 1.402840e-48 | -8.615850e-47 |
| Msa0206450 | Msa0269970 | 0.847968 | 8.262482e-60 | -8.615850e-47 |
| Msa0231200 | Msa0269970 | 0.831389 | 1.716311e-55 | -8.615850e-47 |
| Msa0244640 | Msa0269970 | 0.809407 | 1.921415e-50 | -8.615850e-47 |
| Msa0269970 | Msa0269980 | 0.809348 | 1.977765e-50 | -8.615850e-47 |
| Msa0269970 | Msa0287870 | 0.850849 | 1.301482e-60 | -8.615850e-47 |
| Msa0269970 | Msa0321620 | 0.817828 | 2.693001e-52 | -8.615850e-47 |
| Msa0269970 | Msa0323270 | 0.835601 | 1.526428e-56 | -8.615850e-47 |
| Msa0269970 | Msa0330860 | 0.825466 | 4.617704e-54 | -8.615850e-47 |
| Msa0269970 | Msa0349210 | 0.850594 | 1.535554e-60 | -8.615850e-47 |
| Msa0269970 | Msa0372300 | 0.800315 | 1.527049e-48 | -8.615850e-47 |
| Msa0269970 | Msa0379790 | -0.861451 | 1.016655e-63 | -8.615850e-47 |
| Msa0269970 | Msa0425170 | 0.808395 | 3.163095e-50 | -8.615850e-47 |
| Msa0269970 | Msa0519750 | 0.822932 | 1.818388e-53 | -8.615850e-47 |
| Msa0269970 | Msa0519820 | 0.803308 | 3.709100e-49 | -8.615850e-47 |
| Msa0269970 | Msa0519830 | 0.817988 | 2.478318e-52 | -8.615850e-47 |
| Msa0269970 | Msa0567120 | 0.833093 | 6.501038e-56 | -8.615850e-47 |
| Msa0269970 | Msa0570120 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0269970 | Msa0574050 | 0.802770 | 4.791077e-49 | -8.615850e-47 |
| Msa0269970 | Msa0575320 | 0.820084 | 8.266818e-53 | -8.615850e-47 |
| Msa0269970 | Msa0611210 | 0.809682 | 1.676885e-50 | -8.615850e-47 |
| Msa0269970 | Msa0611540 | -0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0269970 | Msa0658580 | 0.847288 | 1.271737e-59 | -8.615850e-47 |
| Msa0269970 | Msa0664710 | 0.804467 | 2.130614e-49 | -8.615850e-47 |
| Msa0269970 | Msa0674480 | 0.807783 | 4.270187e-50 | -8.615850e-47 |
| Msa0269970 | Msa0703540 | 0.847430 | 1.162334e-59 | -8.615850e-47 |
| Msa0269970 | Msa0706230 | 0.808037 | 3.769934e-50 | -8.615850e-47 |
| Msa0269970 | Msa0709270 | 0.817735 | 2.826081e-52 | -8.615850e-47 |
| Msa0269970 | Msa0729270 | 0.806653 | 7.409166e-50 | -8.615850e-47 |
| Msa0269970 | Msa0817760 | 0.800469 | 1.420217e-48 | -8.615850e-47 |
| Msa0269970 | Msa0826950 | 0.820231 | 7.653011e-53 | -8.615850e-47 |
| Msa0269970 | Msa0829300 | 0.834743 | 2.512412e-56 | -8.615850e-47 |
| Msa0269970 | Msa0829330 | 0.831234 | 1.873681e-55 | -8.615850e-47 |
| Msa0269970 | Msa0869990 | 0.823317 | 1.478394e-53 | -8.615850e-47 |
| Msa0269970 | Msa0878220 | 0.817679 | 2.909635e-52 | -8.615850e-47 |
| Msa0269970 | Msa0881360 | 0.804335 | 2.270093e-49 | -8.615850e-47 |
| Msa0269970 | Msa0891590 | 0.818160 | 2.266303e-52 | -8.615850e-47 |
| Msa0269970 | Msa0903310 | 0.865661 | 5.021715e-65 | -8.615850e-47 |
| Msa0269970 | Msa0930270 | 0.806796 | 6.910681e-50 | -8.615850e-47 |
| Msa0269970 | Msa0935720 | 0.839244 | 1.779142e-57 | -8.615850e-47 |
| Msa0269970 | Msa0935820 | 0.820963 | 5.195946e-53 | -8.615850e-47 |
| Msa0269970 | Msa0944020 | 0.821395 | 4.130554e-53 | -8.615850e-47 |
| Msa0269970 | Msa0960880 | -0.806052 | 9.917272e-50 | -8.615850e-47 |
| Msa0269970 | Msa0972680 | 0.844335 | 8.058176e-59 | -8.615850e-47 |
| Msa0269970 | Msa0992510 | 0.826138 | 3.197184e-54 | -8.615850e-47 |
| Msa0269970 | Msa1021590 | 0.813504 | 2.475020e-51 | -8.615850e-47 |
| Msa0269970 | Msa1044680 | 0.840752 | 7.194242e-58 | -8.615850e-47 |
| Msa0269970 | Msa1105640 | 0.843698 | 1.193889e-58 | -8.615850e-47 |
| Msa0269970 | Msa1122150 | 0.810134 | 1.340288e-50 | -8.615850e-47 |
| Msa0269970 | Msa1132470 | 0.842035 | 3.305167e-58 | -8.615850e-47 |
| Msa0269970 | Msa1140630 | 0.822020 | 2.961734e-53 | -8.615850e-47 |
| Msa0269970 | Msa1148960 | 0.814361 | 1.601856e-51 | -8.615850e-47 |
| Msa0269970 | Msa1150280 | 0.804968 | 1.674297e-49 | -8.615850e-47 |
| Msa0269970 | Msa1160560 | 0.810025 | 1.415156e-50 | -8.615850e-47 |
| Msa0269970 | Msa1214860 | 0.822591 | 2.182476e-53 | -8.615850e-47 |
| Msa0269970 | Msa1226460 | 0.820601 | 6.293453e-53 | -8.615850e-47 |
| Msa0269970 | Msa1300830 | 0.828068 | 1.103700e-54 | -8.615850e-47 |
| Msa0269970 | Msa1319560 | 0.800376 | 1.483662e-48 | -8.615850e-47 |
| Msa0269970 | Msa1325410 | -0.819628 | 1.051001e-52 | -8.615850e-47 |
| Msa0269970 | Msa1331830 | 0.809083 | 2.254209e-50 | -8.615850e-47 |
| Msa0269970 | Msa1342380 | 0.807446 | 5.034721e-50 | -8.615850e-47 |
| Msa0269970 | Msa1345610 | -0.841242 | 5.352022e-58 | -8.615850e-47 |
| Msa0269970 | Msa1363820 | -0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa0269970 | Msa1417440 | -0.860783 | 1.623016e-63 | -8.615850e-47 |
| Msa0269970 | Msa1427100 | 0.824446 | 8.035499e-54 | -8.615850e-47 |
| Msa0269970 | Msa1442920 | 0.851742 | 7.280385e-61 | -8.615850e-47 |
| Msa0269970 | Msa1452710 | 0.815133 | 1.080566e-51 | -8.615850e-47 |
| Msa0269970 | Msa1458680 | 0.848087 | 7.663870e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269970 | MtrunA17_Chr1g0193341 | 70.500 | 400 | 80 | 5 | 26 | 405 | 27 | 408 | 9.42e-105 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 168 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCACAAGTTTCACTAAA+TGG | 0.207773 | 2_3:-1247633 | Msa0269980:CDS |
| TCAAAATGGAGCGGATAATT+TGG | 0.213840 | 2_3:-1247247 | Msa0269980:CDS |
| AATGTTGTTCTGGTTCTTTC+CGG | 0.224028 | 2_3:+1248213 | Msa0269970:CDS |
| GGCTTGGCTGGAGTTTCTTT+TGG | 0.240569 | 2_3:+1247141 | Msa0269970:five_prime_UTR |
| TTGGTTTCTGTAGACTGTTC+TGG | 0.263852 | 2_3:+1248146 | Msa0269970:CDS |
| GATGCCAGTGTTTCTCTAAC+AGG | 0.266826 | 2_3:+1247300 | Msa0269970:five_prime_UTR |
| TGCTTCTGAGCTGGCTTGGC+TGG | 0.271822 | 2_3:+1247129 | Msa0269970:five_prime_UTR |
| TGTTTGAATGATTGAATTCC+TGG | 0.275194 | 2_3:+1247978 | Msa0269970:five_prime_UTR |
| TTTGGAAGGTTCTTGGATAT+TGG | 0.282294 | 2_3:+1247159 | Msa0269970:five_prime_UTR |
| CTCGCTTTCCTCCTCTTTGA+TGG | 0.284125 | 2_3:+1247674 | Msa0269970:five_prime_UTR |
| TGCTTCTGACTCAGAGTTGT+TGG | 0.310843 | 2_3:+1247848 | Msa0269970:five_prime_UTR |
| GTCTCAATATCCAAGTCTTT+TGG | 0.311504 | 2_3:+1247882 | Msa0269970:five_prime_UTR |
| TACAAGTAGGTGAGGAAGTT+GGG | 0.326946 | 2_3:-1247758 | Msa0269980:CDS |
| TCAACAATTGCAATTGCATT+TGG | 0.345919 | 2_3:+1249214 | Msa0269970:CDS |
| GAAGGTTCCACCGGATTTGC+AGG | 0.347717 | 2_3:+1247594 | Msa0269970:five_prime_UTR |
| CTGCACAAGTTTCACTAAAT+GGG | 0.354600 | 2_3:-1247632 | Msa0269980:CDS |
| GGAAGTTGGGGAAACTATTA+AGG | 0.356667 | 2_3:-1247745 | Msa0269980:CDS |
| AACATTGATCCTCTGTCTAA+TGG | 0.363760 | 2_3:-1247807 | Msa0269980:CDS |
| GGGTTCTTCTTTCACTGTTT+CGG | 0.368570 | 2_3:+1249114 | Msa0269970:CDS |
| GAATTTGTTTGAATGCAAAA+AGG | 0.370105 | 2_3:-1246867 | None:intergenic |
| TGGACAGCATCAGATGCTTC+TGG | 0.372645 | 2_3:+1247450 | Msa0269970:five_prime_UTR |
| TGTTCCGTTGAATGTTGTTC+TGG | 0.373987 | 2_3:+1248203 | Msa0269970:CDS |
| GAGGAGGAAACTATTCAAAA+TGG | 0.376197 | 2_3:-1247261 | Msa0269980:CDS |
| ATCAAGAGAATTAGAATTTG+AGG | 0.394623 | 2_3:-1248099 | Msa0269980:CDS |
| GGGACATTAAGGTCAAATAA+TGG | 0.398644 | 2_3:-1247002 | None:intergenic |
| GAGCCTACAGAAACAGTAAA+AGG | 0.403452 | 2_3:-1248266 | Msa0269980:CDS |
| TCTACTTTCTCTGTTTCAGC+TGG | 0.408285 | 2_3:+1248038 | Msa0269970:five_prime_UTR |
| GTAGCCGCATGTTCTTCTCT+TGG | 0.410790 | 2_3:+1248971 | Msa0269970:CDS |
| TTCTACAGCAATGACATCAT+TGG | 0.413723 | 2_3:+1248127 | Msa0269970:exon |
| GCAGCATTAACCGTTGTGTT+AGG | 0.414445 | 2_3:+1247651 | Msa0269970:five_prime_UTR |
| TCTGGAATTGAAGATGTGTT+TGG | 0.420759 | 2_3:+1248164 | Msa0269970:CDS |
| CTGCAGTTTGTTATTGATGT+TGG | 0.421863 | 2_3:-1246747 | None:intergenic |
| TCAGACAACCCCTGCAAATC+CGG | 0.423774 | 2_3:-1247604 | Msa0269980:CDS |
| AAAGACAACAGCAGCGATAT+CGG | 0.428235 | 2_3:-1249167 | Msa0269980:CDS |
| GAGGCCAGAGGCTCAAGCTC+GGG | 0.428516 | 2_3:+1249304 | Msa0269970:CDS |
| TGAATGCTTCTGAGCTGGCT+TGG | 0.431567 | 2_3:+1247125 | Msa0269970:five_prime_UTR |
| AAAGCCCGAGCTTGAGCCTC+TGG | 0.433641 | 2_3:-1249308 | Msa0269980:CDS |
| TCGCCTCTCTCGAGGATACT+TGG | 0.437086 | 2_3:+1247430 | Msa0269970:five_prime_UTR |
| GATGGTCTAGGCCATGCTTT+AGG | 0.437618 | 2_3:-1246819 | None:intergenic |
| GAAAAGATTGTTGTAAAAGA+TGG | 0.441459 | 2_3:-1247558 | Msa0269980:CDS |
| GCCGAAAATAACCAAAGAAC+CGG | 0.441950 | 2_3:-1249275 | Msa0269980:CDS |
| AATTATTATAGTATATAAGT+TGG | 0.452810 | 2_3:-1246915 | None:intergenic |
| TTGTTTGAATGCTTCTGAGC+TGG | 0.455331 | 2_3:+1247120 | Msa0269970:five_prime_UTR |
| TTCAGAAACAAGTGCCGAAA+AGG | 0.455978 | 2_3:-1249335 | Msa0269980:CDS |
| TGAGGCCAGAGGCTCAAGCT+CGG | 0.460438 | 2_3:+1249303 | Msa0269970:CDS |
| GTGTATATAGCAGATGGTCT+AGG | 0.462891 | 2_3:-1246831 | None:intergenic |
| GAGACTAAGAACGACGAAGC+AGG | 0.478008 | 2_3:-1248062 | Msa0269980:CDS |
| GGCTCAACTTCAGTTGCCAC+TGG | 0.485901 | 2_3:+1248824 | Msa0269970:CDS |
| TTACTGAAGTTGAGGAAAAC+CGG | 0.486636 | 2_3:-1248232 | Msa0269980:CDS |
| GGACATTAAGGTCAAATAAT+GGG | 0.487398 | 2_3:-1247001 | None:intergenic |
| ACTGAAAATCAAGAACAAAC+AGG | 0.490972 | 2_3:-1247927 | Msa0269980:CDS |
| TCTTCTTTCACTGTTTCGGT+AGG | 0.496000 | 2_3:+1249118 | Msa0269970:CDS |
| GAAAGAAGTTGTTGGTGATA+CGG | 0.501939 | 2_3:-1247532 | Msa0269980:CDS |
| TTTGGAGAAAGAACGAATTG+AGG | 0.504817 | 2_3:-1247229 | Msa0269980:CDS |
| ATTGAATTCCTGGTTCACTT+TGG | 0.505726 | 2_3:+1247988 | Msa0269970:five_prime_UTR |
| GATTTCTTCCACCTTTGTCT+CGG | 0.511527 | 2_3:+1247341 | Msa0269970:five_prime_UTR |
| AAGACAGCTACAATTGAAGC+AGG | 0.514361 | 2_3:-1247369 | Msa0269980:CDS |
| ACAACATTCAACGGAACAAA+GGG | 0.517659 | 2_3:-1248198 | Msa0269980:CDS |
| GTCACTAGTGAAAGCAAAGA+AGG | 0.517866 | 2_3:-1247076 | Msa0269980:CDS |
| TGAAGTTGAGCCTACAGAAA+AGG | 0.518385 | 2_3:-1248813 | Msa0269980:CDS |
| ACCTCAACTTCAGTAGCTGC+AGG | 0.519771 | 2_3:+1248914 | Msa0269970:CDS |
| GATGGCAAGAAAGAAGTTGT+TGG | 0.519983 | 2_3:-1247540 | Msa0269980:CDS |
| TTACAAGTAGGTGAGGAAGT+TGG | 0.520315 | 2_3:-1247759 | Msa0269980:CDS |
| TCCTCAACTTCAGTAACCAC+AGG | 0.530922 | 2_3:+1248239 | Msa0269970:CDS |
| TGGGGAAACTATTAAGGAAG+TGG | 0.534716 | 2_3:-1247739 | Msa0269980:CDS |
| AAACCTGTCCTCAGAGCCAA+AGG | 0.538748 | 2_3:-1247025 | Msa0269980:CDS |
| GCTTCAACTTCAGCAGCCAC+AGG | 0.539201 | 2_3:+1248689 | Msa0269970:CDS |
| GCTTCAACTTCAGCAGCCAC+AGG | 0.539201 | 2_3:+1248734 | Msa0269970:CDS |
| TGCTGCAGAGGATGAAAAGA+AGG | 0.539585 | 2_3:-1247475 | Msa0269980:CDS |
| GACTAATCAATTTGAAGAGG+AGG | 0.541779 | 2_3:-1249374 | Msa0269980:CDS |
| GGCTACTGAAGTTGAGGCTA+CGG | 0.547997 | 2_3:-1248954 | Msa0269980:CDS |
| TTTATCTGCAGTCTCAACTT+CGG | 0.551981 | 2_3:+1249084 | Msa0269970:CDS |
| AAAGCAAAGAAGGCTATCAC+TGG | 0.552054 | 2_3:-1247066 | Msa0269980:CDS |
| GCCTCAATTTCAGTAACCAC+GGG | 0.552823 | 2_3:+1249004 | Msa0269970:CDS |
| ATCACAAGAAATTTCACAAG+AGG | 0.555487 | 2_3:-1249245 | Msa0269980:CDS |
| ACCCGTGGTTACTGAAATTG+AGG | 0.559345 | 2_3:-1249005 | Msa0269980:CDS |
| TTCGGCTCTGCTGAGGCCAG+AGG | 0.560764 | 2_3:+1249292 | Msa0269970:CDS |
| TGAAGTTGATCCTACAGAAA+CGG | 0.561046 | 2_3:-1248363 | Msa0269980:CDS |
| TGAAGTTGATCCTACAGAAA+CGG | 0.561046 | 2_3:-1248498 | Msa0269980:CDS |
| TGAAGTTGATCCTACAGAAA+CGG | 0.561046 | 2_3:-1248588 | Msa0269980:CDS |
| AACAACATTCAACGGAACAA+AGG | 0.561333 | 2_3:-1248199 | Msa0269980:CDS |
| TGTAGTTGAGCCTACAGAAA+CGG | 0.561347 | 2_3:-1248543 | Msa0269980:CDS |
| ACCTGCAGCTACTGAAGTTG+AGG | 0.561697 | 2_3:-1248915 | Msa0269980:CDS |
| GGTTCACCCTCCAAAAGACT+TGG | 0.562523 | 2_3:-1247892 | Msa0269980:CDS |
| GATGAAAACCAAAGTGAACC+AGG | 0.563084 | 2_3:-1247996 | Msa0269980:CDS |
| ACTTCAGGAGAAGGTTCCAC+CGG | 0.563751 | 2_3:+1247585 | Msa0269970:five_prime_UTR |
| TTCAAACAACATTATAGCAA+AGG | 0.565058 | 2_3:-1247106 | Msa0269980:CDS |
| AGCTTCAACTTCAGTAGCCA+CGG | 0.565228 | 2_3:+1248463 | Msa0269970:CDS |
| ACAAGTAGGTGAGGAAGTTG+GGG | 0.565814 | 2_3:-1247757 | Msa0269980:CDS |
| GAAGACTGAGGAACAGAATG+AGG | 0.566055 | 2_3:-1247394 | Msa0269980:CDS |
| TCATCCACTTCAGTAACCAC+AGG | 0.568495 | 2_3:+1248014 | Msa0269970:five_prime_UTR |
| GGATCAACTTCAGTAACTAC+AGG | 0.568753 | 2_3:+1248509 | Msa0269970:CDS |
| AACCTGTCCTCAGAGCCAAA+GGG | 0.568915 | 2_3:-1247024 | Msa0269980:CDS |
| GGCTCAACTTCAGTAGCCAC+AGG | 0.569717 | 2_3:+1248284 | Msa0269970:CDS |
| GTCAACCTTCGCCTCTCTCG+AGG | 0.572008 | 2_3:+1247422 | Msa0269970:five_prime_UTR |
| AAGGTTCCACCGGATTTGCA+GGG | 0.573924 | 2_3:+1247595 | Msa0269970:five_prime_UTR |
| AGCTTGAACTTCAGTAGCCA+CGG | 0.577924 | 2_3:+1248328 | Msa0269970:intron |
| AGACTAAGAACGACGAAGCA+GGG | 0.578767 | 2_3:-1248061 | Msa0269980:CDS |
| AAAAGTTGTTGTTGCTGCAG+AGG | 0.578943 | 2_3:-1247487 | Msa0269980:CDS |
| GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 2_3:+1249049 | Msa0269970:CDS |
| GTCTCAACTTCGGTAACCAC+GGG | 0.579703 | 2_3:+1249094 | Msa0269970:CDS |
| AGAGGAAGAAGTGAAACCAA+AGG | 0.579767 | 2_3:-1247955 | Msa0269980:CDS |
| TGAGGAGCCAGTGAAAATTG+AGG | 0.580572 | 2_3:-1247211 | Msa0269980:CDS |
| AGTATCCTCGAGAGAGGCGA+AGG | 0.587010 | 2_3:-1247427 | Msa0269980:CDS |
| GGCTCAACTACAGTTGCCAC+AGG | 0.591973 | 2_3:+1248554 | Msa0269970:CDS |
| TTCAACGGAACAAAGGGAAG+AGG | 0.592510 | 2_3:-1248192 | Msa0269980:CDS |
| TGAAGTTGAAGCTACAGAAA+CGG | 0.594350 | 2_3:-1248678 | Msa0269980:CDS |
| TGAAGTTGAAGCTACAGAAA+CGG | 0.594350 | 2_3:-1248723 | Msa0269980:CDS |
| AATTCAATCATTCAAACAAG+AGG | 0.595584 | 2_3:-1247973 | Msa0269980:CDS |
| TCCTCTGTCTAATGGAGTGG+AGG | 0.595670 | 2_3:-1247799 | Msa0269980:CDS |
| TGAACCTGTTAGAGAAACAC+TGG | 0.596965 | 2_3:-1247304 | Msa0269980:CDS |
| AGAACCAGAACAACATTCAA+CGG | 0.596995 | 2_3:-1248207 | Msa0269980:CDS |
| GGCTCAACTACAGTAACTGC+AGG | 0.599075 | 2_3:+1248779 | Msa0269970:CDS |
| AGAGCCTGTGGTTACTGAAG+TGG | 0.604395 | 2_3:-1248018 | Msa0269980:CDS |
| CTAAGTGAACAATTACAAGT+AGG | 0.604657 | 2_3:-1247771 | Msa0269980:CDS |
| TGATCCTCTGTCTAATGGAG+TGG | 0.604813 | 2_3:-1247802 | Msa0269980:CDS |
| TATATCTGCAGTCTCAACTT+CGG | 0.606961 | 2_3:+1249039 | Msa0269970:CDS |
| TGAGACTAATCAATTTGAAG+AGG | 0.607768 | 2_3:-1249377 | Msa0269980:CDS |
| GACAGCTACAATTGAAGCAG+GGG | 0.608684 | 2_3:-1247367 | Msa0269980:CDS |
| ACCTGTGGTTACTGAAGTTG+AGG | 0.609370 | 2_3:-1248240 | Msa0269980:CDS |
| AGCCTCAATTTCAGTAACCA+CGG | 0.610708 | 2_3:+1249003 | Msa0269970:CDS |
| TCCTCCACTCCATTAGACAG+AGG | 0.612429 | 2_3:+1247798 | Msa0269970:five_prime_UTR |
| AGGTTCCACCGGATTTGCAG+GGG | 0.612836 | 2_3:+1247596 | Msa0269970:five_prime_UTR |
| AATTGTTGAATCTTCAGTCG+AGG | 0.614945 | 2_3:-1249200 | Msa0269980:CDS |
| AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 2_3:+1249048 | Msa0269970:CDS |
| AGTCTCAACTTCGGTAACCA+CGG | 0.620579 | 2_3:+1249093 | Msa0269970:CDS |
| AGTGCAGTGTATATAGCAGA+TGG | 0.621336 | 2_3:-1246837 | None:intergenic |
| TGAACAATTACAAGTAGGTG+AGG | 0.622772 | 2_3:-1247766 | Msa0269980:CDS |
| TTACAGTACTGCCTAAAGCA+TGG | 0.629269 | 2_3:+1246808 | Msa0269970:five_prime_UTR |
| AACAGTAAAAGGTGAACCTG+TGG | 0.629286 | 2_3:-1248255 | Msa0269980:CDS |
| TAATGGCACCATCAAAGAGG+AGG | 0.633025 | 2_3:-1247682 | Msa0269980:CDS |
| AGCAGGGGAGACCGAGACAA+AGG | 0.633613 | 2_3:-1247352 | Msa0269980:CDS |
| GGATCAACTTCAGTAACCAC+AGG | 0.633996 | 2_3:+1248374 | Msa0269970:CDS |
| GGATCAACTTCAGTAACCAC+AGG | 0.633996 | 2_3:+1248599 | Msa0269970:CDS |
| GGATCAACTTCAGTAACCAC+AGG | 0.633996 | 2_3:+1248869 | Msa0269970:CDS |
| TGCACAAGTTTCACTAAATG+GGG | 0.634873 | 2_3:-1247631 | Msa0269980:CDS |
| AACGGTAAAAGAAGAAGCCG+TGG | 0.635063 | 2_3:-1248345 | Msa0269980:CDS |
| AACGGTAAAAGAAGAAGCCG+TGG | 0.635063 | 2_3:-1248480 | Msa0269980:CDS |
| AAAAGACTTGGATATTGAGA+CGG | 0.635667 | 2_3:-1247880 | Msa0269980:CDS |
| ACATGCGGCTACTGAAGTTG+AGG | 0.637223 | 2_3:-1248960 | Msa0269980:CDS |
| AACAGTAAAAGAAGAACCAG+TGG | 0.638830 | 2_3:-1248840 | Msa0269980:CDS |
| AGACAGCTACAATTGAAGCA+GGG | 0.640274 | 2_3:-1247368 | Msa0269980:CDS |
| AACAGTAAAAGTCGAACCTG+TGG | 0.643504 | 2_3:-1248390 | Msa0269980:CDS |
| AACAGTAAAAGTCGAACCTG+TGG | 0.643504 | 2_3:-1248615 | Msa0269980:CDS |
| AGGGGAGACCGAGACAAAGG+TGG | 0.643565 | 2_3:-1247349 | Msa0269980:CDS |
| GACAACCCCTGCAAATCCGG+TGG | 0.647241 | 2_3:-1247601 | Msa0269980:CDS |
| ATCTAATGGCACCATCAAAG+AGG | 0.649002 | 2_3:-1247685 | Msa0269980:CDS |
| ACCTGTCCTCAGAGCCAAAG+GGG | 0.650165 | 2_3:-1247023 | Msa0269980:CDS |
| GGAAACTATTCAAAATGGAG+CGG | 0.651455 | 2_3:-1247256 | Msa0269980:CDS |
| AACAGAGAAAGTAGAGCCTG+TGG | 0.651574 | 2_3:-1248030 | Msa0269980:CDS |
| AACTGTAAAAGACGAACCTG+TGG | 0.663286 | 2_3:-1248750 | Msa0269980:CDS |
| AACGGTAAAAGAAGAACCTG+TGG | 0.666816 | 2_3:-1248705 | Msa0269980:CDS |
| AACGGTAAAAGAAGAACCTG+TGG | 0.668002 | 2_3:-1248570 | Msa0269980:CDS |
| AACAGTAAAAGACGAACCTG+TGG | 0.668325 | 2_3:-1248885 | Msa0269980:CDS |
| TATAGTAAACAAAGAACCCG+TGG | 0.669103 | 2_3:-1249020 | Msa0269980:CDS |
| AACAGTGAAAGAAGAACCCG+TGG | 0.675596 | 2_3:-1249110 | Msa0269980:CDS |
| TGTCCAAGTATCCTCGAGAG+AGG | 0.676889 | 2_3:-1247433 | Msa0269980:CDS |
| TAAAGTAAAAGAAGAACCCG+TGG | 0.677200 | 2_3:-1249065 | Msa0269980:CDS |
| AGAACAAACAGGTGATACAG+TGG | 0.678688 | 2_3:-1247916 | Msa0269980:CDS |
| ATCTTCAGTCGAGGCCAATG+AGG | 0.682162 | 2_3:-1249191 | Msa0269980:CDS |
| GGAGAACACTACCAGTGTCG+AGG | 0.687107 | 2_3:-1247511 | Msa0269980:CDS |
| AACACCAAGAGAAGAACATG+CGG | 0.701473 | 2_3:-1248975 | Msa0269980:CDS |
| AACAGTAAAAGAAGAACACG+TGG | 0.707095 | 2_3:-1248435 | Msa0269980:CDS |
| AATTGAGGTTGAATCCACCA+AGG | 0.707557 | 2_3:-1247196 | Msa0269980:CDS |
| CCTGTCCTCAGAGCCAAAGG+GGG | 0.709648 | 2_3:-1247022 | Msa0269980:CDS |
| ACAAACAGGTGATACAGTGG+AGG | 0.715313 | 2_3:-1247913 | Msa0269980:CDS |
| GGAAAGCGAGCCTAACACAA+CGG | 0.720344 | 2_3:-1247661 | Msa0269980:CDS |
| GGTTGACATCAAGAAGACTG+AGG | 0.735500 | 2_3:-1247406 | Msa0269980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAGTATATAAGT+TGG | - | chr2_3:1246918-1246937 | None:intergenic | 10.0% |
| !! | GAATTTGTTTGAATGCAAAA+AGG | - | chr2_3:1246870-1246889 | None:intergenic | 25.0% |
| ! | TTCAAACAACATTATAGCAA+AGG | - | chr2_3:1247109-1247128 | Msa0269980:CDS | 25.0% |
| ! | GAAAAGATTGTTGTAAAAGA+TGG | - | chr2_3:1247561-1247580 | Msa0269980:CDS | 25.0% |
| !!! | ATTAGATCCTTCACTTTTTT+CGG | + | chr2_3:1247701-1247720 | Msa0269970:five_prime_UTR | 25.0% |
| ! | AATTCAATCATTCAAACAAG+AGG | - | chr2_3:1247976-1247995 | Msa0269980:CDS | 25.0% |
| ! | ATCAAGAGAATTAGAATTTG+AGG | - | chr2_3:1248102-1248121 | Msa0269980:CDS | 25.0% |
| !! | ATTTCTTGTGATTCTTTTTC+CGG | + | chr2_3:1249256-1249275 | Msa0269970:CDS | 25.0% |
| GGACATTAAGGTCAAATAAT+GGG | - | chr2_3:1247004-1247023 | None:intergenic | 30.0% | |
| ATCTAAATTCGAAAAAGACG+AGG | - | chr2_3:1247283-1247302 | Msa0269980:CDS | 30.0% | |
| ! | ACAATCTTTTCTTCAACTTC+AGG | + | chr2_3:1247570-1247589 | Msa0269970:five_prime_UTR | 30.0% |
| GAAAAAAGTGAAGGATCTAA+TGG | - | chr2_3:1247702-1247721 | Msa0269980:CDS | 30.0% | |
| CTAAGTGAACAATTACAAGT+AGG | - | chr2_3:1247774-1247793 | Msa0269980:CDS | 30.0% | |
| AAAAGACTTGGATATTGAGA+CGG | - | chr2_3:1247883-1247902 | Msa0269980:CDS | 30.0% | |
| ACTGAAAATCAAGAACAAAC+AGG | - | chr2_3:1247930-1247949 | Msa0269980:CDS | 30.0% | |
| ! | TGATTTTCAGTTTCTTCCTT+TGG | + | chr2_3:1247939-1247958 | Msa0269970:five_prime_UTR | 30.0% |
| TGTTTGAATGATTGAATTCC+TGG | + | chr2_3:1247978-1247997 | Msa0269970:five_prime_UTR | 30.0% | |
| !!! | TCTTCTTTTACTGTTTCTGT+AGG | + | chr2_3:1248443-1248462 | Msa0269970:CDS | 30.0% |
| TCAACAATTGCAATTGCATT+TGG | + | chr2_3:1249214-1249233 | Msa0269970:CDS | 30.0% | |
| ATCACAAGAAATTTCACAAG+AGG | - | chr2_3:1249248-1249267 | Msa0269980:CDS | 30.0% | |
| !! | CTGCAGTTTGTTATTGATGT+TGG | - | chr2_3:1246750-1246769 | None:intergenic | 35.0% |
| GGGACATTAAGGTCAAATAA+TGG | - | chr2_3:1247005-1247024 | Msa0269980:CDS | 35.0% | |
| !! | AGTTTCTTTTGGAAGGTTCT+TGG | + | chr2_3:1247152-1247171 | Msa0269970:five_prime_UTR | 35.0% |
| TTTGGAAGGTTCTTGGATAT+TGG | + | chr2_3:1247159-1247178 | Msa0269970:five_prime_UTR | 35.0% | |
| !!! | TGGTGTTGTATCATTTTCCT+TGG | + | chr2_3:1247179-1247198 | Msa0269970:five_prime_UTR | 35.0% |
| ! | TGTTGTATCATTTTCCTTGG+TGG | + | chr2_3:1247182-1247201 | Msa0269970:five_prime_UTR | 35.0% |
| ! | GATTCAACCTCAATTTTCAC+TGG | + | chr2_3:1247204-1247223 | Msa0269970:five_prime_UTR | 35.0% |
| TTTGGAGAAAGAACGAATTG+AGG | - | chr2_3:1247232-1247251 | Msa0269980:CDS | 35.0% | |
| TCAAAATGGAGCGGATAATT+TGG | - | chr2_3:1247250-1247269 | Msa0269980:CDS | 35.0% | |
| GGAAACTATTCAAAATGGAG+CGG | - | chr2_3:1247259-1247278 | Msa0269980:CDS | 35.0% | |
| GAGGAGGAAACTATTCAAAA+TGG | - | chr2_3:1247264-1247283 | Msa0269980:CDS | 35.0% | |
| TAAATTCGAAAAAGACGAGG+AGG | - | chr2_3:1247280-1247299 | Msa0269980:CDS | 35.0% | |
| !! | GAAAGAAGTTGTTGGTGATA+CGG | - | chr2_3:1247535-1247554 | Msa0269980:CDS | 35.0% |
| ! | TTTTCTTCAACTTCAGGAGA+AGG | + | chr2_3:1247576-1247595 | Msa0269970:five_prime_UTR | 35.0% |
| TGCACAAGTTTCACTAAATG+GGG | - | chr2_3:1247634-1247653 | Msa0269980:CDS | 35.0% | |
| CTGCACAAGTTTCACTAAAT+GGG | - | chr2_3:1247635-1247654 | Msa0269980:CDS | 35.0% | |
| TGAACAATTACAAGTAGGTG+AGG | - | chr2_3:1247769-1247788 | Msa0269980:CDS | 35.0% | |
| AACATTGATCCTCTGTCTAA+TGG | - | chr2_3:1247810-1247829 | Msa0269980:CDS | 35.0% | |
| ! | GTCTCAATATCCAAGTCTTT+TGG | + | chr2_3:1247882-1247901 | Msa0269970:five_prime_UTR | 35.0% |
| ! | TCAATATCCAAGTCTTTTGG+AGG | + | chr2_3:1247885-1247904 | Msa0269970:five_prime_UTR | 35.0% |
| ! | CAATATCCAAGTCTTTTGGA+GGG | + | chr2_3:1247886-1247905 | Msa0269970:five_prime_UTR | 35.0% |
| ATTGAATTCCTGGTTCACTT+TGG | + | chr2_3:1247988-1248007 | Msa0269970:five_prime_UTR | 35.0% | |
| TTCTACAGCAATGACATCAT+TGG | + | chr2_3:1248127-1248146 | Msa0269970:exon | 35.0% | |
| ! | TCTGGAATTGAAGATGTGTT+TGG | + | chr2_3:1248164-1248183 | Msa0269970:CDS | 35.0% |
| ACAACATTCAACGGAACAAA+GGG | - | chr2_3:1248201-1248220 | Msa0269980:CDS | 35.0% | |
| AACAACATTCAACGGAACAA+AGG | - | chr2_3:1248202-1248221 | Msa0269980:CDS | 35.0% | |
| AGAACCAGAACAACATTCAA+CGG | - | chr2_3:1248210-1248229 | Msa0269980:CDS | 35.0% | |
| !! | AATGTTGTTCTGGTTCTTTC+CGG | + | chr2_3:1248213-1248232 | Msa0269970:CDS | 35.0% |
| TTACTGAAGTTGAGGAAAAC+CGG | - | chr2_3:1248235-1248254 | Msa0269980:CDS | 35.0% | |
| !!! | TCACCTTTTACTGTTTCTGT+AGG | + | chr2_3:1248263-1248282 | Msa0269970:CDS | 35.0% |
| TGAAGTTCAAGCTACAGAAA+CGG | - | chr2_3:1248321-1248340 | Msa0269980:CDS | 35.0% | |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr2_3:1248308-1248327 | Msa0269970:intron | 35.0% |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr2_3:1248366-1248385 | Msa0269980:CDS | 35.0% |
| !!! | TCGACTTTTACTGTTTCTGT+TGG | + | chr2_3:1248398-1248417 | Msa0269970:CDS | 35.0% |
| AACAGTAAAAGAAGAACACG+TGG | - | chr2_3:1248438-1248457 | Msa0269980:CDS | 35.0% | |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr2_3:1248308-1248327 | Msa0269970:intron | 35.0% |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr2_3:1248366-1248385 | Msa0269980:CDS | 35.0% |
| ! | TCTTCTTTTACCGTTTCTGT+AGG | + | chr2_3:1248308-1248327 | Msa0269970:intron | 35.0% |
| ! | TGAAGTTGATCCTACAGAAA+CGG | - | chr2_3:1248366-1248385 | Msa0269980:CDS | 35.0% |
| TGAAGTTGAAGCTACAGAAA+CGG | - | chr2_3:1248456-1248475 | Msa0269980:CDS | 35.0% | |
| TGAAGTTGAAGCTACAGAAA+CGG | - | chr2_3:1248456-1248475 | Msa0269980:CDS | 35.0% | |
| ! | TCGTCTTTTACAGTTTCTGT+AGG | + | chr2_3:1248758-1248777 | Msa0269970:CDS | 35.0% |
| ! | TCGTCTTTTACCTTTTCTGT+AGG | + | chr2_3:1248803-1248822 | Msa0269970:CDS | 35.0% |
| AACAGTAAAAGAAGAACCAG+TGG | - | chr2_3:1248843-1248862 | Msa0269980:CDS | 35.0% | |
| TATAGTAAACAAAGAACCCG+TGG | - | chr2_3:1249023-1249042 | Msa0269980:CDS | 35.0% | |
| TATATCTGCAGTCTCAACTT+CGG | + | chr2_3:1249039-1249058 | Msa0269970:CDS | 35.0% | |
| TAAAGTAAAAGAAGAACCCG+TGG | - | chr2_3:1249068-1249087 | Msa0269980:CDS | 35.0% | |
| TTTATCTGCAGTCTCAACTT+CGG | + | chr2_3:1249084-1249103 | Msa0269970:CDS | 35.0% | |
| AATTGTTGAATCTTCAGTCG+AGG | - | chr2_3:1249203-1249222 | Msa0269980:CDS | 35.0% | |
| ! | TGATTCTTTTTCCGGTTCTT+TGG | + | chr2_3:1249264-1249283 | Msa0269970:CDS | 35.0% |
| !! | TCCGGTTCTTTGGTTATTTT+CGG | + | chr2_3:1249274-1249293 | Msa0269970:CDS | 35.0% |
| TTACAGTACTGCCTAAAGCA+TGG | + | chr2_3:1246808-1246827 | Msa0269970:five_prime_UTR | 40.0% | |
| GTGTATATAGCAGATGGTCT+AGG | - | chr2_3:1246834-1246853 | None:intergenic | 40.0% | |
| AGTGCAGTGTATATAGCAGA+TGG | - | chr2_3:1246840-1246859 | None:intergenic | 40.0% | |
| ! | CGTTTTCATTTTCGTTGTCG+TGG | - | chr2_3:1246948-1246967 | None:intergenic | 40.0% |
| AAAGCAAAGAAGGCTATCAC+TGG | - | chr2_3:1247069-1247088 | Msa0269980:CDS | 40.0% | |
| GTCACTAGTGAAAGCAAAGA+AGG | - | chr2_3:1247079-1247098 | Msa0269980:CDS | 40.0% | |
| TTGTTTGAATGCTTCTGAGC+TGG | + | chr2_3:1247120-1247139 | Msa0269970:five_prime_UTR | 40.0% | |
| AATTGAGGTTGAATCCACCA+AGG | - | chr2_3:1247199-1247218 | Msa0269980:CDS | 40.0% | |
| TGAACCTGTTAGAGAAACAC+TGG | - | chr2_3:1247307-1247326 | Msa0269980:CDS | 40.0% | |
| GATTTCTTCCACCTTTGTCT+CGG | + | chr2_3:1247341-1247360 | Msa0269970:five_prime_UTR | 40.0% | |
| AGACAGCTACAATTGAAGCA+GGG | - | chr2_3:1247371-1247390 | Msa0269980:CDS | 40.0% | |
| AAGACAGCTACAATTGAAGC+AGG | - | chr2_3:1247372-1247391 | Msa0269980:CDS | 40.0% | |
| ! | AAAAGTTGTTGTTGCTGCAG+AGG | - | chr2_3:1247490-1247509 | Msa0269980:CDS | 40.0% |
| !! | AACAACTTTTTCCTCGACAC+TGG | + | chr2_3:1247500-1247519 | Msa0269970:five_prime_UTR | 40.0% |
| GATGGCAAGAAAGAAGTTGT+TGG | - | chr2_3:1247543-1247562 | Msa0269980:CDS | 40.0% | |
| GCTGCACAAGTTTCACTAAA+TGG | - | chr2_3:1247636-1247655 | Msa0269980:CDS | 40.0% | |
| ATCTAATGGCACCATCAAAG+AGG | - | chr2_3:1247688-1247707 | Msa0269980:CDS | 40.0% | |
| CAAGCAACCGAAAAAAGTGA+AGG | - | chr2_3:1247711-1247730 | Msa0269980:CDS | 40.0% | |
| !!! | ACTTTTTTCGGTTGCTTGCT+CGG | + | chr2_3:1247713-1247732 | Msa0269970:five_prime_UTR | 40.0% |
| TGGGGAAACTATTAAGGAAG+TGG | - | chr2_3:1247742-1247761 | Msa0269980:CDS | 40.0% | |
| GGAAGTTGGGGAAACTATTA+AGG | - | chr2_3:1247748-1247767 | Msa0269980:CDS | 40.0% | |
| TACAAGTAGGTGAGGAAGTT+GGG | - | chr2_3:1247761-1247780 | Msa0269980:CDS | 40.0% | |
| TTACAAGTAGGTGAGGAAGT+TGG | - | chr2_3:1247762-1247781 | Msa0269980:CDS | 40.0% | |
| AGAACAAACAGGTGATACAG+TGG | - | chr2_3:1247919-1247938 | Msa0269980:CDS | 40.0% | |
| AGAGGAAGAAGTGAAACCAA+AGG | - | chr2_3:1247958-1247977 | Msa0269980:CDS | 40.0% | |
| GATGAAAACCAAAGTGAACC+AGG | - | chr2_3:1247999-1248018 | Msa0269980:CDS | 40.0% | |
| TCTACTTTCTCTGTTTCAGC+TGG | + | chr2_3:1248038-1248057 | Msa0269970:five_prime_UTR | 40.0% | |
| TTGGTTTCTGTAGACTGTTC+TGG | + | chr2_3:1248146-1248165 | Msa0269970:CDS | 40.0% | |
| TGTTCCGTTGAATGTTGTTC+TGG | + | chr2_3:1248203-1248222 | Msa0269970:CDS | 40.0% | |
| AACAGTAAAAGGTGAACCTG+TGG | - | chr2_3:1248258-1248277 | Msa0269980:CDS | 40.0% | |
| GAGCCTACAGAAACAGTAAA+AGG | - | chr2_3:1248269-1248288 | Msa0269980:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr2_3:1248303-1248322 | Msa0269980:CDS | 40.0% | |
| AACAGTAAAAGTCGAACCTG+TGG | - | chr2_3:1248393-1248412 | Msa0269980:CDS | 40.0% | |
| GGATCAACTTCAGTAACTAC+AGG | + | chr2_3:1248509-1248528 | Msa0269970:CDS | 40.0% | |
| ! | TCGTCTTTTACCGTTTCTGT+AGG | + | chr2_3:1248533-1248552 | Msa0269970:CDS | 40.0% |
| TGTAGTTGAGCCTACAGAAA+CGG | - | chr2_3:1248546-1248565 | Msa0269980:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr2_3:1248303-1248322 | Msa0269980:CDS | 40.0% | |
| AACAGTAAAAGTCGAACCTG+TGG | - | chr2_3:1248393-1248412 | Msa0269980:CDS | 40.0% | |
| AACGGTAAAAGAAGAACCTG+TGG | - | chr2_3:1248303-1248322 | Msa0269980:CDS | 40.0% | |
| AACTGTAAAAGACGAACCTG+TGG | - | chr2_3:1248753-1248772 | Msa0269980:CDS | 40.0% | |
| TGAAGTTGAGCCTACAGAAA+AGG | - | chr2_3:1248276-1248295 | Msa0269980:CDS | 40.0% | |
| AACAGTAAAAGACGAACCTG+TGG | - | chr2_3:1248888-1248907 | Msa0269980:CDS | 40.0% | |
| ! | GGTTCGTCTTTTACTGTTTC+TGG | + | chr2_3:1248890-1248909 | Msa0269970:CDS | 40.0% |
| AACACCAAGAGAAGAACATG+CGG | - | chr2_3:1248978-1248997 | Msa0269980:CDS | 40.0% | |
| AGCCTCAATTTCAGTAACCA+CGG | + | chr2_3:1249003-1249022 | Msa0269970:CDS | 40.0% | |
| GGGTTCTTCTTTCACTGTTT+CGG | + | chr2_3:1249114-1249133 | Msa0269970:CDS | 40.0% | |
| TCTTCTTTCACTGTTTCGGT+AGG | + | chr2_3:1249118-1249137 | Msa0269970:CDS | 40.0% | |
| ! | AGGCTCTACTTCGATGTTTT+TGG | + | chr2_3:1249138-1249157 | Msa0269970:CDS | 40.0% |
| AAAGACAACAGCAGCGATAT+CGG | - | chr2_3:1249170-1249189 | Msa0269980:CDS | 40.0% | |
| ! | TGCTGTTGTCTTTTCCTCAT+TGG | + | chr2_3:1249177-1249196 | Msa0269970:CDS | 40.0% |
| GCCGAAAATAACCAAAGAAC+CGG | - | chr2_3:1249278-1249297 | Msa0269980:CDS | 40.0% | |
| !! | TTCAGAAACAAGTGCCGAAA+AGG | - | chr2_3:1249338-1249357 | Msa0269980:CDS | 40.0% |
| TTGACCTTAATGTCCCCCTT+TGG | + | chr2_3:1247009-1247028 | Msa0269970:five_prime_UTR | 45.0% | |
| ! | TGGCTGGAGTTTCTTTTGGA+AGG | + | chr2_3:1247145-1247164 | Msa0269970:five_prime_UTR | 45.0% |
| TGAGGAGCCAGTGAAAATTG+AGG | - | chr2_3:1247214-1247233 | Msa0269980:CDS | 45.0% | |
| GATGCCAGTGTTTCTCTAAC+AGG | + | chr2_3:1247300-1247319 | Msa0269970:five_prime_UTR | 45.0% | |
| GACAGCTACAATTGAAGCAG+GGG | - | chr2_3:1247370-1247389 | Msa0269980:CDS | 45.0% | |
| GAAGACTGAGGAACAGAATG+AGG | - | chr2_3:1247397-1247416 | Msa0269980:CDS | 45.0% | |
| GGTTGACATCAAGAAGACTG+AGG | - | chr2_3:1247409-1247428 | Msa0269980:CDS | 45.0% | |
| TGCTGCAGAGGATGAAAAGA+AGG | - | chr2_3:1247478-1247497 | Msa0269980:CDS | 45.0% | |
| GCAGCATTAACCGTTGTGTT+AGG | + | chr2_3:1247651-1247670 | Msa0269970:five_prime_UTR | 45.0% | |
| TAATGGCACCATCAAAGAGG+AGG | - | chr2_3:1247685-1247704 | Msa0269980:CDS | 45.0% | |
| !!! | CTTTTTTCGGTTGCTTGCTC+GGG | + | chr2_3:1247714-1247733 | Msa0269970:five_prime_UTR | 45.0% |
| ACAAGTAGGTGAGGAAGTTG+GGG | - | chr2_3:1247760-1247779 | Msa0269980:CDS | 45.0% | |
| TGATCCTCTGTCTAATGGAG+TGG | - | chr2_3:1247805-1247824 | Msa0269980:CDS | 45.0% | |
| TGCTTCTGACTCAGAGTTGT+TGG | + | chr2_3:1247848-1247867 | Msa0269970:five_prime_UTR | 45.0% | |
| ACAAACAGGTGATACAGTGG+AGG | - | chr2_3:1247916-1247935 | Msa0269980:CDS | 45.0% | |
| TCATCCACTTCAGTAACCAC+AGG | + | chr2_3:1248014-1248033 | Msa0269970:five_prime_UTR | 45.0% | |
| AACAGAGAAAGTAGAGCCTG+TGG | - | chr2_3:1248033-1248052 | Msa0269980:CDS | 45.0% | |
| AGACTAAGAACGACGAAGCA+GGG | - | chr2_3:1248064-1248083 | Msa0269980:CDS | 45.0% | |
| TTCAACGGAACAAAGGGAAG+AGG | - | chr2_3:1248195-1248214 | Msa0269980:CDS | 45.0% | |
| TCCTCAACTTCAGTAACCAC+AGG | + | chr2_3:1248239-1248258 | Msa0269970:CDS | 45.0% | |
| ACCTGTGGTTACTGAAGTTG+AGG | - | chr2_3:1248243-1248262 | Msa0269980:CDS | 45.0% | |
| AGCTTGAACTTCAGTAGCCA+CGG | + | chr2_3:1248328-1248347 | Msa0269970:intron | 45.0% | |
| AACGGTAAAAGAAGAAGCCG+TGG | - | chr2_3:1248348-1248367 | Msa0269980:CDS | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr2_3:1248374-1248393 | Msa0269970:CDS | 45.0% | |
| AGCTTCAACTTCAGTAGCCA+CGG | + | chr2_3:1248463-1248482 | Msa0269970:CDS | 45.0% | |
| AACGGTAAAAGAAGAAGCCG+TGG | - | chr2_3:1248348-1248367 | Msa0269980:CDS | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr2_3:1248374-1248393 | Msa0269970:CDS | 45.0% | |
| GGATCAACTTCAGTAACCAC+AGG | + | chr2_3:1248374-1248393 | Msa0269970:CDS | 45.0% | |
| GCCTCAATTTCAGTAACCAC+GGG | + | chr2_3:1249004-1249023 | Msa0269970:CDS | 45.0% | |
| ACCCGTGGTTACTGAAATTG+AGG | - | chr2_3:1249008-1249027 | Msa0269980:CDS | 45.0% | |
| AGTCTCAACTTCGGTAACCA+CGG | + | chr2_3:1249048-1249067 | Msa0269970:CDS | 45.0% | |
| AGTCTCAACTTCGGTAACCA+CGG | + | chr2_3:1249048-1249067 | Msa0269970:CDS | 45.0% | |
| AACAGTGAAAGAAGAACCCG+TGG | - | chr2_3:1249113-1249132 | Msa0269980:CDS | 45.0% | |
| ! | CTCGGGCTTTTCTTCCTTTT+CGG | + | chr2_3:1249321-1249340 | Msa0269970:CDS | 45.0% |
| GATGGTCTAGGCCATGCTTT+AGG | - | chr2_3:1246822-1246841 | None:intergenic | 50.0% | |
| AGAGCCAAAGGGGGACATTA+AGG | - | chr2_3:1247016-1247035 | Msa0269980:CDS | 50.0% | |
| AACCTGTCCTCAGAGCCAAA+GGG | - | chr2_3:1247027-1247046 | Msa0269980:CDS | 50.0% | |
| AAACCTGTCCTCAGAGCCAA+AGG | - | chr2_3:1247028-1247047 | Msa0269980:CDS | 50.0% | |
| !!! | TGGCTCTGAGGACAGGTTTT+TGG | + | chr2_3:1247029-1247048 | Msa0269970:five_prime_UTR | 50.0% |
| !! | CTCTGAGGACAGGTTTTTGG+AGG | + | chr2_3:1247032-1247051 | Msa0269970:five_prime_UTR | 50.0% |
| !! | GAGGACAGGTTTTTGGAGGA+TGG | + | chr2_3:1247036-1247055 | Msa0269970:five_prime_UTR | 50.0% |
| TGAATGCTTCTGAGCTGGCT+TGG | + | chr2_3:1247125-1247144 | Msa0269970:five_prime_UTR | 50.0% | |
| ! | GGCTTGGCTGGAGTTTCTTT+TGG | + | chr2_3:1247141-1247160 | Msa0269970:five_prime_UTR | 50.0% |
| TGTCCAAGTATCCTCGAGAG+AGG | - | chr2_3:1247436-1247455 | Msa0269980:CDS | 50.0% | |
| TGGACAGCATCAGATGCTTC+TGG | + | chr2_3:1247450-1247469 | Msa0269970:five_prime_UTR | 50.0% | |
| ACTTCAGGAGAAGGTTCCAC+CGG | + | chr2_3:1247585-1247604 | Msa0269970:five_prime_UTR | 50.0% | |
| AAGGTTCCACCGGATTTGCA+GGG | + | chr2_3:1247595-1247614 | Msa0269970:five_prime_UTR | 50.0% | |
| TCAGACAACCCCTGCAAATC+CGG | - | chr2_3:1247607-1247626 | Msa0269980:CDS | 50.0% | |
| GGAAAGCGAGCCTAACACAA+CGG | - | chr2_3:1247664-1247683 | Msa0269980:CDS | 50.0% | |
| CTCGCTTTCCTCCTCTTTGA+TGG | + | chr2_3:1247674-1247693 | Msa0269970:five_prime_UTR | 50.0% | |
| TCCTCCACTCCATTAGACAG+AGG | + | chr2_3:1247798-1247817 | Msa0269970:five_prime_UTR | 50.0% | |
| TCCTCTGTCTAATGGAGTGG+AGG | - | chr2_3:1247802-1247821 | Msa0269980:CDS | 50.0% | |
| GGTTCACCCTCCAAAAGACT+TGG | - | chr2_3:1247895-1247914 | Msa0269980:CDS | 50.0% | |
| AGAGCCTGTGGTTACTGAAG+TGG | - | chr2_3:1248021-1248040 | Msa0269980:CDS | 50.0% | |
| GAGACTAAGAACGACGAAGC+AGG | - | chr2_3:1248065-1248084 | Msa0269980:CDS | 50.0% | |
| GGCTCAACTACAGTAACTGC+AGG | + | chr2_3:1248779-1248798 | Msa0269970:CDS | 50.0% | |
| ACCTCAACTTCAGTAGCTGC+AGG | + | chr2_3:1248914-1248933 | Msa0269970:CDS | 50.0% | |
| ACCTGCAGCTACTGAAGTTG+AGG | - | chr2_3:1248918-1248937 | Msa0269980:CDS | 50.0% | |
| GGCTACTGAAGTTGAGGCTA+CGG | - | chr2_3:1248957-1248976 | Msa0269980:CDS | 50.0% | |
| ACATGCGGCTACTGAAGTTG+AGG | - | chr2_3:1248963-1248982 | Msa0269980:CDS | 50.0% | |
| GTAGCCGCATGTTCTTCTCT+TGG | + | chr2_3:1248971-1248990 | Msa0269970:CDS | 50.0% | |
| GTCTCAACTTCGGTAACCAC+GGG | + | chr2_3:1249049-1249068 | Msa0269970:CDS | 50.0% | |
| GTCTCAACTTCGGTAACCAC+GGG | + | chr2_3:1249049-1249068 | Msa0269970:CDS | 50.0% | |
| ATCTTCAGTCGAGGCCAATG+AGG | - | chr2_3:1249194-1249213 | Msa0269980:CDS | 50.0% | |
| !! | GGTTATTTTCGGCTCTGCTG+AGG | + | chr2_3:1249285-1249304 | Msa0269970:CDS | 50.0% |
| !! | AATGTCCCCCTTTGGCTCTG+AGG | + | chr2_3:1247017-1247036 | Msa0269970:five_prime_UTR | 55.0% |
| ACCTGTCCTCAGAGCCAAAG+GGG | - | chr2_3:1247026-1247045 | Msa0269980:CDS | 55.0% | |
| AGTATCCTCGAGAGAGGCGA+AGG | - | chr2_3:1247430-1247449 | Msa0269980:CDS | 55.0% | |
| TCGCCTCTCTCGAGGATACT+TGG | + | chr2_3:1247430-1247449 | Msa0269970:five_prime_UTR | 55.0% | |
| GGAGAACACTACCAGTGTCG+AGG | - | chr2_3:1247514-1247533 | Msa0269980:CDS | 55.0% | |
| GAAGGTTCCACCGGATTTGC+AGG | + | chr2_3:1247594-1247613 | Msa0269970:five_prime_UTR | 55.0% | |
| AGGTTCCACCGGATTTGCAG+GGG | + | chr2_3:1247596-1247615 | Msa0269970:five_prime_UTR | 55.0% | |
| GGCTCAACTTCAGTAGCCAC+AGG | + | chr2_3:1248284-1248303 | Msa0269970:CDS | 55.0% | |
| GGCTCAACTACAGTTGCCAC+AGG | + | chr2_3:1248554-1248573 | Msa0269970:CDS | 55.0% | |
| GCTTCAACTTCAGCAGCCAC+AGG | + | chr2_3:1248689-1248708 | Msa0269970:CDS | 55.0% | |
| GCTTCAACTTCAGCAGCCAC+AGG | + | chr2_3:1248689-1248708 | Msa0269970:CDS | 55.0% | |
| GGCTCAACTTCAGTTGCCAC+TGG | + | chr2_3:1248824-1248843 | Msa0269970:CDS | 55.0% | |
| CCTGTCCTCAGAGCCAAAGG+GGG | - | chr2_3:1247025-1247044 | Msa0269980:CDS | 60.0% | |
| !! | TGCTTCTGAGCTGGCTTGGC+TGG | + | chr2_3:1247129-1247148 | Msa0269970:five_prime_UTR | 60.0% |
| AGGGGAGACCGAGACAAAGG+TGG | - | chr2_3:1247352-1247371 | Msa0269980:CDS | 60.0% | |
| AGCAGGGGAGACCGAGACAA+AGG | - | chr2_3:1247355-1247374 | Msa0269980:CDS | 60.0% | |
| GTCAACCTTCGCCTCTCTCG+AGG | + | chr2_3:1247422-1247441 | Msa0269970:five_prime_UTR | 60.0% | |
| GACAACCCCTGCAAATCCGG+TGG | - | chr2_3:1247604-1247623 | Msa0269980:CDS | 60.0% | |
| TGAGGCCAGAGGCTCAAGCT+CGG | + | chr2_3:1249303-1249322 | Msa0269970:CDS | 60.0% | |
| AAAGCCCGAGCTTGAGCCTC+TGG | - | chr2_3:1249311-1249330 | Msa0269980:CDS | 60.0% | |
| !! | CCCCCTTTGGCTCTGAGGAC+AGG | + | chr2_3:1247022-1247041 | Msa0269970:five_prime_UTR | 65.0% |
| TTCGGCTCTGCTGAGGCCAG+AGG | + | chr2_3:1249292-1249311 | Msa0269970:CDS | 65.0% | |
| GAGGCCAGAGGCTCAAGCTC+GGG | + | chr2_3:1249304-1249323 | Msa0269970:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1246727 | 1249390 | 1246727 | ID=Msa0269970;Name=Msa0269970 |
| chr2_3 | mRNA | 1246727 | 1249390 | 1246727 | ID=Msa0269970-mRNA-1;Parent=Msa0269970;Name=Msa0269970-mRNA-1;_AED=0.15;_eAED=0.47;_QI=1410|0|0.5|1|0|0|2|0|405 |
| chr2_3 | exon | 1246727 | 1248305 | 1246727 | ID=Msa0269970-mRNA-1:exon:522;Parent=Msa0269970-mRNA-1 |
| chr2_3 | exon | 1248342 | 1249390 | 1248342 | ID=Msa0269970-mRNA-1:exon:523;Parent=Msa0269970-mRNA-1 |
| chr2_3 | five_prime_UTR | 1246727 | 1248136 | 1246727 | ID=Msa0269970-mRNA-1:five_prime_utr;Parent=Msa0269970-mRNA-1 |
| chr2_3 | CDS | 1248137 | 1248305 | 1248137 | ID=Msa0269970-mRNA-1:cds;Parent=Msa0269970-mRNA-1 |
| chr2_3 | CDS | 1248342 | 1249390 | 1248342 | ID=Msa0269970-mRNA-1:cds;Parent=Msa0269970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
