Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872070 | XP_039682983.1 | 60.700 | 257 | 65 | 5 | 2 | 258 | 335 | 555 | 1.22e-90 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0872070 | Msa1075670 | 0.823820 | 1.127261e-53 | -8.615850e-47 |
| Msa0872070 | Msa1131660 | 0.810947 | 8.945666e-51 | -8.615850e-47 |
| Msa0872070 | Msa1237100 | 0.847359 | 1.215976e-59 | -8.615850e-47 |
| Msa0872070 | Msa1242880 | 0.803512 | 3.364700e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872070 | MtrunA17_Chr8g0363081 | 85.000 | 40 | 6 | 0 | 28 | 67 | 56 | 95 | 4.83e-18 | 77.0 |
| Msa0872070 | MtrunA17_Chr1g0167871 | 31.304 | 115 | 78 | 1 | 4 | 118 | 540 | 653 | 1.45e-13 | 70.1 |
| Msa0872070 | MtrunA17_Chr5g0393521 | 33.333 | 93 | 62 | 0 | 2 | 94 | 91 | 183 | 3.28e-13 | 68.2 |
| Msa0872070 | MtrunA17_Chr5g0417421 | 33.333 | 93 | 62 | 0 | 2 | 94 | 159 | 251 | 4.81e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAACATACCTCAGAAAT+TGG | 0.243949 | 6_1:+7386097 | None:intergenic |
| AAGTAAATTGTCTAAATGTT+TGG | 0.289076 | 6_1:+7387059 | None:intergenic |
| AGTAAATTGTCTAAATGTTT+GGG | 0.325835 | 6_1:+7387060 | None:intergenic |
| TCAGCAAATGAACGTCTTGC+AGG | 0.328519 | 6_1:+7385272 | None:intergenic |
| AAGGAATGTCTTCAGATTCT+TGG | 0.338819 | 6_1:-7387246 | Msa0872070:CDS |
| ATAAATCAGACTTTGTGTTT+TGG | 0.344158 | 6_1:-7387272 | Msa0872070:CDS |
| TGTTAACATACCTCAGAAAC+TGG | 0.367619 | 6_1:+7386488 | None:intergenic |
| ATAAACCATACCACAGCAAC+TGG | 0.416921 | 6_1:+7386711 | None:intergenic |
| CTTGTTCAAGTTTCACAGAC+TGG | 0.418492 | 6_1:+7386543 | None:intergenic |
| TTAAACTCTAATGATTGAGT+TGG | 0.452957 | 6_1:+7386771 | None:intergenic |
| AAATGTTTGGGATATATCAT+AGG | 0.461226 | 6_1:+7387072 | None:intergenic |
| AAACATTTAGACAATTTACT+TGG | 0.464607 | 6_1:-7387057 | Msa0872070:CDS |
| GCGTTGTGCTAGAATATTGT+CGG | 0.483634 | 6_1:-7386187 | Msa0872070:intron |
| AGTGCATTTAGCCAACTTAA+CGG | 0.488629 | 6_1:+7385196 | None:intergenic |
| ACAGTTATCTTCCGTTAAGT+TGG | 0.497994 | 6_1:-7385207 | Msa0872070:CDS |
| CAGGGGTCTGTTTCTGTGAG+TGG | 0.525221 | 6_1:-7385338 | Msa0872070:CDS |
| TTGTTCAAGTTTCACAGACT+GGG | 0.525590 | 6_1:+7386544 | None:intergenic |
| TGTGAGTGGGAAAAGTGGTC+TGG | 0.525933 | 6_1:-7385324 | Msa0872070:CDS |
| CAAATCAGTTCCAGTTTCTG+AGG | 0.530348 | 6_1:-7386498 | Msa0872070:intron |
| AATCAAATTTACCTCTTGCA+TGG | 0.532167 | 6_1:+7387197 | None:intergenic |
| CAATTTACTTGGCCTTGAGT+TGG | 0.536966 | 6_1:-7387046 | Msa0872070:CDS |
| CAAATCAGTTCCAATTTCTG+AGG | 0.544295 | 6_1:-7386107 | Msa0872070:intron |
| GTGTTGTGCTAGAATATTGT+CGG | 0.546436 | 6_1:-7386578 | Msa0872070:intron |
| ACATCTGACTGCATACCATC+AGG | 0.547580 | 6_1:+7386925 | None:intergenic |
| TTAACGGAAGATAACTGTGT+TGG | 0.551162 | 6_1:+7385212 | None:intergenic |
| GTTTCTGTGAGTGGGAAAAG+TGG | 0.557971 | 6_1:-7385329 | Msa0872070:CDS |
| GTTGTGCAAGTTGTGTATGA+TGG | 0.561221 | 6_1:-7387297 | Msa0872070:CDS |
| TTAATTCTCTGAATCACAGC+AGG | 0.565217 | 6_1:+7386961 | None:intergenic |
| ACTGCATACCATCAGGATGA+AGG | 0.568516 | 6_1:+7386932 | None:intergenic |
| AGGGGTCTGTTTCTGTGAGT+GGG | 0.572154 | 6_1:-7385337 | Msa0872070:CDS |
| AAGCGTCACCTTCATCCTGA+TGG | 0.574315 | 6_1:-7386940 | Msa0872070:CDS |
| AAAAGTAACTCCAGTTGCTG+TGG | 0.605589 | 6_1:-7386721 | Msa0872070:intron |
| TAACACGCAACGCCAACTCA+AGG | 0.609892 | 6_1:+7387034 | None:intergenic |
| TATCGTCAGTCATCTGTGCA+AGG | 0.622296 | 6_1:-7386997 | Msa0872070:CDS |
| GTGGTCTGGATCAAAGTGGT+AGG | 0.631899 | 6_1:-7385310 | Msa0872070:CDS |
| TCTTAGAAAGACCATGCAAG+AGG | 0.637724 | 6_1:-7387208 | Msa0872070:intron |
| GTTGGCTAAATGCACTGACA+AGG | 0.652484 | 6_1:-7385189 | Msa0872070:CDS |
| AATTTCACAGGATGATGATG+CGG | 0.671451 | 6_1:-7388121 | None:intergenic |
| ACAGATGACTGACGATAATG+TGG | 0.687022 | 6_1:+7387003 | None:intergenic |
| AGATGTACAAGAAGTTGACG+AGG | 0.710130 | 6_1:-7386908 | Msa0872070:intron |
| AAAAGTGGTCTGGATCAAAG+TGG | 0.720897 | 6_1:-7385314 | Msa0872070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATGTTTTTAAATAAT+TGG | - | chr6_1:7385647-7385666 | Msa0872070:intron | 10.0% |
| !! | TCAATATTTCAAACAATATA+AGG | + | chr6_1:7385442-7385461 | None:intergenic | 15.0% |
| !! | ATCATTAATCAAATATCAAA+GGG | + | chr6_1:7387829-7387848 | None:intergenic | 15.0% |
| !! | AATCATTAATCAAATATCAA+AGG | + | chr6_1:7387830-7387849 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCCTTCAGATATA+AGG | - | chr6_1:7385972-7385991 | Msa0872070:intron | 20.0% |
| !! | AGTAAATTGTCTAAATGTTT+GGG | + | chr6_1:7386237-7386256 | None:intergenic | 20.0% |
| !! | AAGTAAATTGTCTAAATGTT+TGG | + | chr6_1:7386238-7386257 | None:intergenic | 20.0% |
| !! | AAACATTTAGACAATTTACT+TGG | - | chr6_1:7386237-7386256 | Msa0872070:intron | 20.0% |
| !! | CACAATTAAAATCAAAACAA+AGG | + | chr6_1:7386699-7386718 | None:intergenic | 20.0% |
| !!! | TGTTTTTAGTTAATAGTTCA+CGG | - | chr6_1:7386842-7386861 | Msa0872070:intron | 20.0% |
| !! | ATTAGTATGATTTATTGAAG+TGG | - | chr6_1:7386890-7386909 | Msa0872070:intron | 20.0% |
| !! | CGCAATTAAAATAAAAACAA+AGG | + | chr6_1:7387090-7387109 | None:intergenic | 20.0% |
| !!! | TTTTAACATTACTTTTGTGT+CGG | + | chr6_1:7387416-7387435 | None:intergenic | 20.0% |
| !! | ATGTTAAAATTACTTAAAGC+TGG | - | chr6_1:7387427-7387446 | Msa0872070:intron | 20.0% |
| !! | TGTTAAAATTACTTAAAGCT+GGG | - | chr6_1:7387428-7387447 | Msa0872070:intron | 20.0% |
| !! | TCATTAATCAAATATCAAAG+GGG | + | chr6_1:7387828-7387847 | None:intergenic | 20.0% |
| !! | CAAACTGTATAAATCAAAAT+CGG | + | chr6_1:7387897-7387916 | None:intergenic | 20.0% |
| !!! | AAACTTTTAAAAGGGCTAAT+TGG | + | chr6_1:7385287-7385306 | None:intergenic | 25.0% |
| !!! | CATTGAGGAAACTTTTAAAA+GGG | + | chr6_1:7385295-7385314 | None:intergenic | 25.0% |
| !! | TCATTGAGGAAACTTTTAAA+AGG | + | chr6_1:7385296-7385315 | None:intergenic | 25.0% |
| ! | CGAATTTATGAATTTGATTG+AGG | - | chr6_1:7385607-7385626 | Msa0872070:intron | 25.0% |
| ! | TATATAGACAACCTTGTTAA+TGG | + | chr6_1:7385866-7385885 | None:intergenic | 25.0% |
| !! | ATAAATCAGACTTTGTGTTT+TGG | - | chr6_1:7386022-7386041 | Msa0872070:intron | 25.0% |
| !! | TAAATCAGACTTTGTGTTTT+GGG | - | chr6_1:7386023-7386042 | Msa0872070:intron | 25.0% |
| ! | TATGTAGTAACTTTGTCTAT+AGG | - | chr6_1:7386149-7386168 | Msa0872070:CDS | 25.0% |
| !! | AACTTTGTCTATAGGAATTT+TGG | - | chr6_1:7386157-7386176 | Msa0872070:CDS | 25.0% |
| !! | AAATGTTTGGGATATATCAT+AGG | + | chr6_1:7386225-7386244 | None:intergenic | 25.0% |
| ! | TTAAACTCTAATGATTGAGT+TGG | + | chr6_1:7386526-7386545 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | - | chr6_1:7386635-7386654 | Msa0872070:intron | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | - | chr6_1:7386635-7386654 | Msa0872070:intron | 25.0% |
| !!! | TCACGTTTTAATGTTTGATT+TGG | - | chr6_1:7387250-7387269 | Msa0872070:CDS | 25.0% |
| ! | TCGATTAGTATGATTTATTG+AGG | - | chr6_1:7386887-7386906 | Msa0872070:intron | 25.0% |
| !!! | AGCAGAAGTATTTCATATAT+AGG | - | chr6_1:7387511-7387530 | Msa0872070:intron | 25.0% |
| ! | AAGTATTTCATATATAGGTC+TGG | - | chr6_1:7387516-7387535 | Msa0872070:intron | 25.0% |
| !!! | TTTTTTTTGCAAAACTCAGA+AGG | - | chr6_1:7387670-7387689 | Msa0872070:intron | 25.0% |
| CTGACATCAAAAGTTATGTA+TGG | - | chr6_1:7385329-7385348 | Msa0872070:CDS | 30.0% | |
| AAAATGATTGTACACAACCA+TGG | + | chr6_1:7385396-7385415 | None:intergenic | 30.0% | |
| ! | TTCGAGAATTCATCATTTTG+CGG | + | chr6_1:7385563-7385582 | None:intergenic | 30.0% |
| AAATTCATAAATTCGCCGAT+TGG | + | chr6_1:7385602-7385621 | None:intergenic | 30.0% | |
| AACACATATTGCATTACTGT+TGG | - | chr6_1:7385716-7385735 | Msa0872070:intron | 30.0% | |
| AAGTTTAATCCTAATCAGAG+TGG | - | chr6_1:7385749-7385768 | Msa0872070:intron | 30.0% | |
| ATGTTGAAGTTCCATTAACA+AGG | - | chr6_1:7385852-7385871 | Msa0872070:intron | 30.0% | |
| !!! | TGTGATTAGTTGATAGCTTT+TGG | - | chr6_1:7385894-7385913 | Msa0872070:intron | 30.0% |
| !!! | TTAGTTGATAGCTTTTGGTT+TGG | - | chr6_1:7385899-7385918 | Msa0872070:intron | 30.0% |
| ! | TTTTTCCTTCAGATATAAGG+TGG | - | chr6_1:7385975-7385994 | Msa0872070:intron | 30.0% |
| AATCAAATTTACCTCTTGCA+TGG | + | chr6_1:7386100-7386119 | None:intergenic | 30.0% | |
| ATAATTGTGTTTGTTCCTGA+AGG | - | chr6_1:7386185-7386204 | Msa0872070:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | - | chr6_1:7386642-7386661 | Msa0872070:intron | 30.0% | |
| TCACGGTTTAATGTTTCATT+TGG | - | chr6_1:7386859-7386878 | Msa0872070:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | - | chr6_1:7386642-7386661 | Msa0872070:intron | 30.0% | |
| TGTTAACATACCTCAGAAAT+TGG | + | chr6_1:7387200-7387219 | None:intergenic | 30.0% | |
| GGTGATAAGTTATGATAGAT+TGG | - | chr6_1:7387299-7387318 | Msa0872070:CDS | 30.0% | |
| !! | TTATGATAGATTGGTTTCCT+TGG | - | chr6_1:7387308-7387327 | Msa0872070:CDS | 30.0% |
| TTTCATATATAGGTCTGGTA+AGG | - | chr6_1:7387521-7387540 | Msa0872070:intron | 30.0% | |
| CTAATCAAGTTAAACCCAAA+AGG | - | chr6_1:7387578-7387597 | Msa0872070:intron | 30.0% | |
| AAAGGTTGTGACTCATATAT+AGG | - | chr6_1:7387727-7387746 | Msa0872070:intron | 30.0% | |
| ACTGATAAGGAAATTGTTTG+TGG | - | chr6_1:7387792-7387811 | Msa0872070:intron | 30.0% | |
| GAAGAATTGAGTGATCATTG+AGG | + | chr6_1:7385310-7385329 | None:intergenic | 35.0% | |
| TTTAGACACTTAACCAACCA+TGG | - | chr6_1:7385376-7385395 | Msa0872070:intron | 35.0% | |
| AAGGAATGTCTTCAGATTCT+TGG | - | chr6_1:7386048-7386067 | Msa0872070:intron | 35.0% | |
| TTAATTCTCTGAATCACAGC+AGG | + | chr6_1:7386336-7386355 | None:intergenic | 35.0% | |
| GTGTTGTGCTAGAATATTGT+CGG | - | chr6_1:7386716-7386735 | Msa0872070:intron | 35.0% | |
| ! | TTGTTCAAGTTTCACAGACT+GGG | + | chr6_1:7386753-7386772 | None:intergenic | 35.0% |
| TGTTAACATACCTCAGAAAC+TGG | + | chr6_1:7386809-7386828 | None:intergenic | 35.0% | |
| CAAATCAGTTCCAATTTCTG+AGG | - | chr6_1:7387187-7387206 | Msa0872070:intron | 35.0% | |
| TATAGGTCTGGTAAGGAAAT+TGG | - | chr6_1:7387528-7387547 | Msa0872070:intron | 35.0% | |
| TTGTGACTCATATATAGGTC+TGG | - | chr6_1:7387732-7387751 | Msa0872070:intron | 35.0% | |
| ! | TTTTTCGCTCTTGTGTTAAC+AGG | - | chr6_1:7387937-7387956 | Msa0872070:intron | 35.0% |
| ! | TTTTCGCTCTTGTGTTAACA+GGG | - | chr6_1:7387938-7387957 | Msa0872070:intron | 35.0% |
| TTAACGGAAGATAACTGTGT+TGG | + | chr6_1:7388085-7388104 | None:intergenic | 35.0% | |
| ACAGTTATCTTCCGTTAAGT+TGG | - | chr6_1:7388087-7388106 | Msa0872070:intron | 35.0% | |
| AGTGCATTTAGCCAACTTAA+CGG | + | chr6_1:7388101-7388120 | None:intergenic | 35.0% | |
| ! | CTGACTTGATCAAGATTGTG+CGG | - | chr6_1:7385248-7385267 | Msa0872070:CDS | 40.0% |
| TGATTGTACACAACCATGGT+TGG | + | chr6_1:7385392-7385411 | None:intergenic | 40.0% | |
| ! | TTTTGCAGTCTTCAAGCTCA+TGG | - | chr6_1:7385488-7385507 | Msa0872070:intron | 40.0% |
| CTTACTCAGACTTTGTGTCA+AGG | - | chr6_1:7385518-7385537 | Msa0872070:intron | 40.0% | |
| ! | AAGGTTCAAGTTCTTCTCAG+AGG | - | chr6_1:7385537-7385556 | Msa0872070:intron | 40.0% |
| CTGTCTCAAGTTAAGCCAAT+CGG | - | chr6_1:7385584-7385603 | Msa0872070:intron | 40.0% | |
| TTAATCCTAATCAGAGTGGC+TGG | - | chr6_1:7385753-7385772 | Msa0872070:intron | 40.0% | |
| TAATACCAGCCACTCTGATT+AGG | + | chr6_1:7385761-7385780 | None:intergenic | 40.0% | |
| CTATAAATGCACATGTGGAG+AGG | - | chr6_1:7385829-7385848 | Msa0872070:intron | 40.0% | |
| CACAACCACCTTATATCTGA+AGG | + | chr6_1:7385983-7386002 | None:intergenic | 40.0% | |
| GTTGTGCAAGTTGTGTATGA+TGG | - | chr6_1:7385997-7386016 | Msa0872070:intron | 40.0% | |
| !!! | AGACTTTGTGTTTTGGGACA+AGG | - | chr6_1:7386029-7386048 | Msa0872070:intron | 40.0% |
| TCTTAGAAAGACCATGCAAG+AGG | - | chr6_1:7386086-7386105 | Msa0872070:intron | 40.0% | |
| TTGTGTTTGTTCCTGAAGGT+TGG | - | chr6_1:7386189-7386208 | Msa0872070:intron | 40.0% | |
| !! | CAATTTACTTGGCCTTGAGT+TGG | - | chr6_1:7386248-7386267 | Msa0872070:intron | 40.0% |
| ACAGATGACTGACGATAATG+TGG | + | chr6_1:7386294-7386313 | None:intergenic | 40.0% | |
| AGATGTACAAGAAGTTGACG+AGG | - | chr6_1:7386386-7386405 | Msa0872070:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | - | chr6_1:7386573-7386592 | Msa0872070:intron | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | + | chr6_1:7386586-7386605 | None:intergenic | 40.0% | |
| ! | CTTGTTCAAGTTTCACAGAC+TGG | + | chr6_1:7386754-7386773 | None:intergenic | 40.0% |
| CAAATCAGTTCCAGTTTCTG+AGG | - | chr6_1:7386796-7386815 | Msa0872070:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | - | chr6_1:7386573-7386592 | Msa0872070:intron | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | + | chr6_1:7386586-7386605 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | - | chr6_1:7387107-7387126 | Msa0872070:intron | 40.0% | |
| TTCCACATGAGGTCCTAATT+GGG | - | chr6_1:7387478-7387497 | Msa0872070:intron | 40.0% | |
| AAGTTAAACCCAAAAGGCAG+TGG | - | chr6_1:7387584-7387603 | Msa0872070:intron | 40.0% | |
| AGTTAAACCCAAAAGGCAGT+GGG | - | chr6_1:7387585-7387604 | Msa0872070:intron | 40.0% | |
| ACTTCTGCTCAATGTCTGAA+AGG | - | chr6_1:7387709-7387728 | Msa0872070:intron | 40.0% | |
| ! | ATATAGGTCTGGCTTCTGAA+AGG | - | chr6_1:7387743-7387762 | Msa0872070:intron | 40.0% |
| ! | GGCTTCTGAAAGGTTTAACT+TGG | - | chr6_1:7387753-7387772 | Msa0872070:intron | 40.0% |
| GTACTCACATGTGACTGATA+AGG | - | chr6_1:7387779-7387798 | Msa0872070:intron | 40.0% | |
| TTTCGCTCTTGTGTTAACAG+GGG | - | chr6_1:7387939-7387958 | Msa0872070:intron | 40.0% | |
| AAAAGTGGTCTGGATCAAAG+TGG | - | chr6_1:7387980-7387999 | Msa0872070:intron | 40.0% | |
| !! | CCTTGAAGGCTTTGGACATT+TGG | + | chr6_1:7385795-7385814 | None:intergenic | 45.0% |
| CCAAATGTCCAAAGCCTTCA+AGG | - | chr6_1:7385792-7385811 | Msa0872070:intron | 45.0% | |
| CCATTTGACCTTGAAGGCTT+TGG | + | chr6_1:7385803-7385822 | None:intergenic | 45.0% | |
| CCAAAGCCTTCAAGGTCAAA+TGG | - | chr6_1:7385800-7385819 | Msa0872070:intron | 45.0% | |
| GCTGGCTATAAATGCACATG+TGG | - | chr6_1:7385824-7385843 | Msa0872070:intron | 45.0% | |
| GATCATCTTCACCAACCTTC+AGG | + | chr6_1:7386203-7386222 | None:intergenic | 45.0% | |
| TATCGTCAGTCATCTGTGCA+AGG | - | chr6_1:7386297-7386316 | Msa0872070:intron | 45.0% | |
| ACTGCATACCATCAGGATGA+AGG | + | chr6_1:7386365-7386384 | None:intergenic | 45.0% | |
| ACATCTGACTGCATACCATC+AGG | + | chr6_1:7386372-7386391 | None:intergenic | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | - | chr6_1:7386578-7386597 | Msa0872070:intron | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | - | chr6_1:7386578-7386597 | Msa0872070:intron | 45.0% | |
| ! | CTGACTGATTCAAAGTGCCA+AGG | + | chr6_1:7387328-7387347 | None:intergenic | 45.0% |
| TGGCACTTTGAATCAGTCAG+AGG | - | chr6_1:7387328-7387347 | Msa0872070:intron | 45.0% | |
| ATGAAACCTTTACCCAGTGC+AGG | - | chr6_1:7387452-7387471 | Msa0872070:intron | 45.0% | |
| CTTCCACATGAGGTCCTAAT+TGG | - | chr6_1:7387477-7387496 | Msa0872070:intron | 45.0% | |
| TCCACATGAGGTCCTAATTG+GGG | - | chr6_1:7387479-7387498 | Msa0872070:intron | 45.0% | |
| GCTGTGATATCACCCCAATT+AGG | + | chr6_1:7387494-7387513 | None:intergenic | 45.0% | |
| GTCTGGTAAGGAAATTGGTC+TGG | - | chr6_1:7387533-7387552 | Msa0872070:intron | 45.0% | |
| TTGCAAAACTCAGAAGGCAG+AGG | - | chr6_1:7387676-7387695 | Msa0872070:intron | 45.0% | |
| TGCAAAACTCAGAAGGCAGA+GGG | - | chr6_1:7387677-7387696 | Msa0872070:intron | 45.0% | |
| GTTTCTGTGAGTGGGAAAAG+TGG | - | chr6_1:7387965-7387984 | Msa0872070:intron | 45.0% | |
| TCAGCAAATGAACGTCTTGC+AGG | + | chr6_1:7388025-7388044 | None:intergenic | 45.0% | |
| ! | GTTGGCTAAATGCACTGACA+AGG | - | chr6_1:7388105-7388124 | Msa0872070:intron | 45.0% |
| CCAGCACCATTTGACCTTGA+AGG | + | chr6_1:7385809-7385828 | None:intergenic | 50.0% | |
| CCTTCAAGGTCAAATGGTGC+TGG | - | chr6_1:7385806-7385825 | Msa0872070:intron | 50.0% | |
| TAACACGCAACGCCAACTCA+AGG | + | chr6_1:7386263-7386282 | None:intergenic | 50.0% | |
| AAGCGTCACCTTCATCCTGA+TGG | - | chr6_1:7386354-7386373 | Msa0872070:intron | 50.0% | |
| ! | GAAGTACCTGCACTGGGTAA+AGG | + | chr6_1:7387461-7387480 | None:intergenic | 50.0% |
| !! | CATGTGGAAGTACCTGCACT+GGG | + | chr6_1:7387467-7387486 | None:intergenic | 50.0% |
| !! | TCATGTGGAAGTACCTGCAC+TGG | + | chr6_1:7387468-7387487 | None:intergenic | 50.0% |
| AGTGCAGGTACTTCCACATG+AGG | - | chr6_1:7387467-7387486 | Msa0872070:intron | 50.0% | |
| ACCCCAATTAGGACCTCATG+TGG | + | chr6_1:7387483-7387502 | None:intergenic | 50.0% | |
| ! | TTCCAGACCCACTGCCTTTT+GGG | + | chr6_1:7387595-7387614 | None:intergenic | 50.0% |
| ! | TTTCCAGACCCACTGCCTTT+TGG | + | chr6_1:7387596-7387615 | None:intergenic | 50.0% |
| !! | AGGGGTCTGTTTCTGTGAGT+GGG | - | chr6_1:7387957-7387976 | Msa0872070:intron | 50.0% |
| TGTGAGTGGGAAAAGTGGTC+TGG | - | chr6_1:7387970-7387989 | Msa0872070:intron | 50.0% | |
| GTGGTCTGGATCAAAGTGGT+AGG | - | chr6_1:7387984-7388003 | Msa0872070:intron | 50.0% | |
| AACCCAAAAGGCAGTGGGTC+TGG | - | chr6_1:7387590-7387609 | Msa0872070:intron | 55.0% | |
| !! | CAGGGGTCTGTTTCTGTGAG+TGG | - | chr6_1:7387956-7387975 | Msa0872070:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7385184 | 7388132 | 7385184 | ID=Msa0872070;Name=Msa0872070 |
| chr6_1 | mRNA | 7385184 | 7388132 | 7385184 | ID=Msa0872070-mRNA-1;Parent=Msa0872070;Name=Msa0872070-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.16|0.14|0.71|1|1|7|0|258 |
| chr6_1 | exon | 7388122 | 7388132 | 7388122 | ID=Msa0872070-mRNA-1:exon:2228;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7387209 | 7387329 | 7387209 | ID=Msa0872070-mRNA-1:exon:2227;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7386909 | 7387109 | 7386909 | ID=Msa0872070-mRNA-1:exon:2226;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7386722 | 7386811 | 7386722 | ID=Msa0872070-mRNA-1:exon:2225;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7386499 | 7386588 | 7386499 | ID=Msa0872070-mRNA-1:exon:2224;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7386108 | 7386197 | 7386108 | ID=Msa0872070-mRNA-1:exon:2223;Parent=Msa0872070-mRNA-1 |
| chr6_1 | exon | 7385184 | 7385357 | 7385184 | ID=Msa0872070-mRNA-1:exon:2222;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7388122 | 7388132 | 7388122 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7387209 | 7387329 | 7387209 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7386909 | 7387109 | 7386909 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7386722 | 7386811 | 7386722 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7386499 | 7386588 | 7386499 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7386108 | 7386197 | 7386108 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| chr6_1 | CDS | 7385184 | 7385357 | 7385184 | ID=Msa0872070-mRNA-1:cds;Parent=Msa0872070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
