Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131660 | XP_039682983.1 | 68.182 | 220 | 62 | 4 | 45 | 260 | 340 | 555 | 6.61e-90 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131660 | A0A072UBY5 | 68.182 | 220 | 62 | 4 | 45 | 260 | 340 | 555 | 3.16e-90 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1075670 | Msa1131660 | 0.918837 | 9.513131e-87 | -8.615850e-47 |
| Msa1075690 | Msa1131660 | 0.811029 | 8.589084e-51 | -8.615850e-47 |
| Msa1131660 | Msa1237100 | 0.885299 | 9.161448e-72 | -8.615850e-47 |
| Msa1131660 | Msa1242880 | 0.894246 | 2.953311e-75 | -8.615850e-47 |
| Msa0872070 | Msa1131660 | 0.810947 | 8.945666e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131660 | MtrunA17_Chr8g0363081 | 85.000 | 40 | 6 | 0 | 66 | 105 | 56 | 95 | 7.20e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAACCGGTATTGTATAAT+TGG | 0.210888 | 7_3:+84202518 | None:intergenic |
| AAGTAAATTGTCTAAATGTT+TGG | 0.295647 | 7_3:+84199325 | None:intergenic |
| AGTAAATTGTCTAAATGTTT+GGG | 0.325835 | 7_3:+84199326 | None:intergenic |
| TCAGCAAATGAACGTCTTGC+AGG | 0.328519 | 7_3:+84197537 | None:intergenic |
| AAGGAATGTCTTCAGATTCT+TGG | 0.338819 | 7_3:-84199512 | Msa1131660:CDS |
| ATAAATCGGACTTTGTGTTT+TGG | 0.350479 | 7_3:-84199538 | Msa1131660:CDS |
| TGTTAACATACCTCAGAAAC+TGG | 0.367619 | 7_3:+84198363 | None:intergenic |
| TTTGTCAATGCTGTTATTGC+TGG | 0.373118 | 7_3:-84202432 | Msa1131660:CDS |
| CCGGTTGTGGGGATCAGAAA+TGG | 0.383601 | 7_3:-84202504 | Msa1131660:CDS |
| CAATTATACAATACCGGTTG+TGG | 0.389578 | 7_3:-84202517 | Msa1131660:CDS |
| ATAAACCATACCACAGCAAC+TGG | 0.416921 | 7_3:+84198977 | None:intergenic |
| TTTAATTGATTTAGATATGT+TGG | 0.421815 | 7_3:-84203311 | Msa1131660:intron |
| TTAAACTCTAATGATTGAGT+TGG | 0.452957 | 7_3:+84199037 | None:intergenic |
| AAATGTTTGGGATATATCAT+AGG | 0.461226 | 7_3:+84199338 | None:intergenic |
| AAACATTTAGACAATTTACT+TGG | 0.469749 | 7_3:-84199323 | Msa1131660:CDS |
| GCGTTGTGCTAGAATATTGT+CGG | 0.483634 | 7_3:-84198453 | Msa1131660:intron |
| AGTGCATTTAGCCAACTTAA+CGG | 0.488629 | 7_3:+84197461 | None:intergenic |
| ACAGTTATCTTCCGTTAAGT+TGG | 0.497994 | 7_3:-84197472 | Msa1131660:CDS |
| CCATTTCTGATCCCCACAAC+CGG | 0.498095 | 7_3:+84202504 | None:intergenic |
| TGTGTATGATGGTGATAAAT+CGG | 0.501752 | 7_3:-84199552 | Msa1131660:CDS |
| CGGTTGTGGGGATCAGAAAT+GGG | 0.510653 | 7_3:-84202503 | Msa1131660:CDS |
| CAAGTCCAATTATACAATAC+CGG | 0.511549 | 7_3:-84202523 | Msa1131660:CDS |
| CAGGGGTCTGTTTCTGTGAG+TGG | 0.525221 | 7_3:-84197603 | Msa1131660:CDS |
| TGTGAGTGGGAAAAGTGGTC+TGG | 0.525933 | 7_3:-84197589 | Msa1131660:CDS |
| CAAATCAGTTCCAGTTTCTG+AGG | 0.530348 | 7_3:-84198373 | Msa1131660:intron |
| CAATTTACTTGGTCTTGAGT+TGG | 0.532056 | 7_3:-84199312 | Msa1131660:CDS |
| AATCAAATTTACCTCTTGCA+TGG | 0.532167 | 7_3:+84199463 | None:intergenic |
| AATTATACAATACCGGTTGT+GGG | 0.536315 | 7_3:-84202516 | Msa1131660:CDS |
| ACATCTGACTGCATACCATC+AGG | 0.547580 | 7_3:+84199191 | None:intergenic |
| TTAACGGAAGATAACTGTGT+TGG | 0.551162 | 7_3:+84197477 | None:intergenic |
| GTTTCTGTGAGTGGGAAAAG+TGG | 0.557971 | 7_3:-84197594 | Msa1131660:CDS |
| GTTGTGCAAGTTGTGTATGA+TGG | 0.561221 | 7_3:-84199563 | Msa1131660:CDS |
| TTAATTCTCTGAATCACAGC+AGG | 0.565217 | 7_3:+84199227 | None:intergenic |
| ACTGCATACCATCAGGATGA+AGG | 0.568516 | 7_3:+84199198 | None:intergenic |
| AGGGGTCTGTTTCTGTGAGT+GGG | 0.572154 | 7_3:-84197602 | Msa1131660:CDS |
| AAGCGTCACCTTCATCCTGA+TGG | 0.574315 | 7_3:-84199206 | Msa1131660:CDS |
| AAAAGTAACTCCAGTTGCTG+TGG | 0.605589 | 7_3:-84198987 | Msa1131660:intron |
| TATCGTCAGTCATCTGTGCA+AGG | 0.622296 | 7_3:-84199263 | Msa1131660:CDS |
| GTGGTCTGGATCAAAGTGGT+AGG | 0.631899 | 7_3:-84197575 | Msa1131660:CDS |
| TCTTAGAAAGACCATGCAAG+AGG | 0.637724 | 7_3:-84199474 | Msa1131660:intron |
| ATTATACAATACCGGTTGTG+GGG | 0.640380 | 7_3:-84202515 | Msa1131660:CDS |
| GTTGGCTAAATGCACTGACA+AGG | 0.652484 | 7_3:-84197454 | Msa1131660:CDS |
| ACAGATGACTGACGATAATG+TGG | 0.687022 | 7_3:+84199269 | None:intergenic |
| AAAAGTGGTCTGGATCAAAG+TGG | 0.720897 | 7_3:-84197579 | Msa1131660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAATTATATTTTTTTTTGA+AGG | - | chr7_3:84197559-84197578 | Msa1131660:CDS | 10.0% |
| !!! | AAATTGAATAATTTTTTTAC+CGG | - | chr7_3:84197763-84197782 | Msa1131660:intron | 10.0% |
| !!! | ATAAATATGAATTTTCAATT+AGG | - | chr7_3:84198158-84198177 | Msa1131660:intron | 10.0% |
| !!! | TTTTTTTTTTAAGAAATCAT+TGG | - | chr7_3:84200874-84200893 | Msa1131660:intron | 10.0% |
| !!! | GTTATATTGTATAATTTTTT+TGG | - | chr7_3:84201001-84201020 | Msa1131660:intron | 10.0% |
| !!! | TGAAAATGTTTTTAAATAAT+TGG | - | chr7_3:84202339-84202358 | Msa1131660:intron | 10.0% |
| !!! | TATCAAATACATATTTTTCT+AGG | - | chr7_3:84197671-84197690 | Msa1131660:intron | 15.0% |
| !!! | TAAATTGATGAATGATTTTT+TGG | + | chr7_3:84197704-84197723 | None:intergenic | 15.0% |
| !!! | AATTGAATAATTTTTTTACC+GGG | - | chr7_3:84197764-84197783 | Msa1131660:intron | 15.0% |
| !! | TTAGTATTAAATAACTTCTT+TGG | + | chr7_3:84197811-84197830 | None:intergenic | 15.0% |
| !!! | TTTAATTGATTTAGATATGT+TGG | - | chr7_3:84198941-84198960 | Msa1131660:intron | 15.0% |
| !! | ACAAACAAATTTAAACAATA+AGG | + | chr7_3:84200816-84200835 | None:intergenic | 15.0% |
| !!! | TGTTTAAATTTGTTTGTTTT+TGG | - | chr7_3:84200819-84200838 | Msa1131660:intron | 15.0% |
| !!! | TTTTTTTAGCATTGATTTTT+TGG | - | chr7_3:84201238-84201257 | Msa1131660:intron | 15.0% |
| !! | TCAATATTTCAAACAATATA+AGG | + | chr7_3:84202134-84202153 | None:intergenic | 15.0% |
| !! | ATCATTAATCAAATATCAAA+GGG | + | chr7_3:84204522-84204541 | None:intergenic | 15.0% |
| !! | AATCATTAATCAAATATCAA+AGG | + | chr7_3:84204523-84204542 | None:intergenic | 15.0% |
| !!! | TATCAACTACATTTTTTTTG+AGG | - | chr7_3:84197642-84197661 | Msa1131660:intron | 20.0% |
| !!! | ATCAACTACATTTTTTTTGA+GGG | - | chr7_3:84197643-84197662 | Msa1131660:intron | 20.0% |
| !!! | GTTATTTAATACTAACTTGT+AGG | - | chr7_3:84197816-84197835 | Msa1131660:intron | 20.0% |
| !! | GGAAAATGAATAAAAATTAG+TGG | - | chr7_3:84197837-84197856 | Msa1131660:intron | 20.0% |
| !! | ATTTGAAAGTTCTTTAATAG+AGG | - | chr7_3:84198109-84198128 | Msa1131660:intron | 20.0% |
| !! | TTTGAAAGTTCTTTAATAGA+GGG | - | chr7_3:84198110-84198129 | Msa1131660:intron | 20.0% |
| !!! | AGTATATCGATTTATTTTCT+TGG | - | chr7_3:84198472-84198491 | Msa1131660:intron | 20.0% |
| !!! | ATAACAAAGTTTTACCAAAT+TGG | + | chr7_3:84198604-84198623 | None:intergenic | 20.0% |
| !! | TGTATCAATTGCTATATATA+GGG | + | chr7_3:84198672-84198691 | None:intergenic | 20.0% |
| !! | TTGTATCAATTGCTATATAT+AGG | + | chr7_3:84198673-84198692 | None:intergenic | 20.0% |
| !! | TATATAGCAATTGATACAAT+TGG | - | chr7_3:84198674-84198693 | Msa1131660:intron | 20.0% |
| !! | ATATAGCAATTGATACAATT+GGG | - | chr7_3:84198675-84198694 | Msa1131660:intron | 20.0% |
| !!! | ATCATCATCTCAATTTTTTT+TGG | - | chr7_3:84198804-84198823 | Msa1131660:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGCATGCA+TGG | - | chr7_3:84199102-84199121 | Msa1131660:intron | 20.0% |
| !!! | TTATTTGTTTTGTTTGATTG+TGG | - | chr7_3:84199157-84199176 | Msa1131660:intron | 20.0% |
| !!! | TAATGATGAAAATTTTGCAT+TGG | - | chr7_3:84199410-84199429 | Msa1131660:intron | 20.0% |
| !! | TATTGTTGATGTTGAAAATT+TGG | - | chr7_3:84199433-84199452 | Msa1131660:intron | 20.0% |
| !!! | TGGTTTATTTTAAAGAGTTA+AGG | - | chr7_3:84199533-84199552 | Msa1131660:CDS | 20.0% |
| !! | AACAATGTTTGTGTAAATTT+GGG | - | chr7_3:84199607-84199626 | Msa1131660:intron | 20.0% |
| !!! | TTTTCTATTCAATGATTCTT+TGG | - | chr7_3:84199936-84199955 | Msa1131660:intron | 20.0% |
| !! | TTTCTATTCAATGATTCTTT+GGG | - | chr7_3:84199937-84199956 | Msa1131660:intron | 20.0% |
| !!! | TTGGAATTTGGAAATTTTTT+TGG | - | chr7_3:84200008-84200027 | Msa1131660:intron | 20.0% |
| !!! | GAAGCATTTGAAAAAATATT+TGG | - | chr7_3:84200146-84200165 | Msa1131660:intron | 20.0% |
| !! | GAAAAAATATTTGGTTGATT+TGG | - | chr7_3:84200155-84200174 | Msa1131660:intron | 20.0% |
| !! | TGAAAAAGGATTTATATGTT+TGG | - | chr7_3:84200303-84200322 | Msa1131660:intron | 20.0% |
| !! | GATTTATATGTTTGGAAAAT+TGG | - | chr7_3:84200311-84200330 | Msa1131660:intron | 20.0% |
| !! | AAACATATGGAACTTATTAT+TGG | - | chr7_3:84200380-84200399 | Msa1131660:intron | 20.0% |
| !!! | AAAATTATTTTGGATTTGTG+TGG | - | chr7_3:84200419-84200438 | Msa1131660:intron | 20.0% |
| !! | AATCCATAAACAAAACAAAA+AGG | + | chr7_3:84200505-84200524 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTATGGATTT+AGG | - | chr7_3:84200506-84200525 | Msa1131660:intron | 20.0% |
| !!! | TTGTTTTGTTTATGGATTTA+GGG | - | chr7_3:84200507-84200526 | Msa1131660:intron | 20.0% |
| !!! | TTGTATAATTTTTTTGGTAG+TGG | - | chr7_3:84201007-84201026 | Msa1131660:intron | 20.0% |
| !! | ATTATGGGATAAATATTCTT+TGG | - | chr7_3:84201083-84201102 | Msa1131660:intron | 20.0% |
| !!! | TATTAACTGATATAGTTTGT+TGG | - | chr7_3:84201748-84201767 | Msa1131660:intron | 20.0% |
| !!! | TTTTTTTTCCTTCAGATATA+AGG | - | chr7_3:84202664-84202683 | Msa1131660:intron | 20.0% |
| !! | AGTAAATTGTCTAAATGTTT+GGG | + | chr7_3:84202929-84202948 | None:intergenic | 20.0% |
| !! | AAGTAAATTGTCTAAATGTT+TGG | + | chr7_3:84202930-84202949 | None:intergenic | 20.0% |
| !! | AAACATTTAGACAATTTACT+TGG | - | chr7_3:84202929-84202948 | Msa1131660:intron | 20.0% |
| !!! | TGTTTTTAGTTAATAGTTCA+CGG | - | chr7_3:84203534-84203553 | Msa1131660:intron | 20.0% |
| !! | ATTAGTATGATTTATTGAAG+TGG | - | chr7_3:84203582-84203601 | Msa1131660:intron | 20.0% |
| !! | CGCAATTAAAATAAAAACAA+AGG | + | chr7_3:84203782-84203801 | None:intergenic | 20.0% |
| !!! | TTTTAACATTACTTTTGTGT+CGG | + | chr7_3:84204108-84204127 | None:intergenic | 20.0% |
| !! | ATGTTAAAATTACTTAAAGC+TGG | - | chr7_3:84204119-84204138 | Msa1131660:intron | 20.0% |
| !! | TGTTAAAATTACTTAAAGCT+GGG | - | chr7_3:84204120-84204139 | Msa1131660:intron | 20.0% |
| !! | TCATTAATCAAATATCAAAG+GGG | + | chr7_3:84204521-84204540 | None:intergenic | 20.0% |
| !! | CAAACTGTATAAATCAAAAT+CGG | + | chr7_3:84204590-84204609 | None:intergenic | 20.0% |
| !! | ATTTGGGATATAAAATGACA+TGG | + | chr7_3:84197517-84197536 | None:intergenic | 25.0% |
| ! | TTTGCATGTCTTCAATATTT+GGG | + | chr7_3:84197533-84197552 | None:intergenic | 25.0% |
| ! | ATTTGCATGTCTTCAATATT+TGG | + | chr7_3:84197534-84197553 | None:intergenic | 25.0% |
| ! | AATACGCAATGGTAAAATAA+TGG | + | chr7_3:84197728-84197747 | None:intergenic | 25.0% |
| !!! | TGTTTTTATTTGACCTAAGA+CGG | - | chr7_3:84198033-84198052 | Msa1131660:intron | 25.0% |
| ! | ATCACTTGAATCTAATTGTT+TGG | + | chr7_3:84198207-84198226 | None:intergenic | 25.0% |
| ! | ATCGACAAATAAGTAAAATC+TGG | + | chr7_3:84198301-84198320 | None:intergenic | 25.0% |
| !!! | TTTTAACCCTTTAGTTTTGA+GGG | + | chr7_3:84198351-84198370 | None:intergenic | 25.0% |
| ! | TGTATTTACAAGTACCATTT+AGG | + | chr7_3:84198412-84198431 | None:intergenic | 25.0% |
| !! | TAGTTTTTGTGTAAAGATTG+AGG | - | chr7_3:84198439-84198458 | Msa1131660:CDS | 25.0% |
| !!! | TTGTTTTGTCTGGTATAAAA+AGG | + | chr7_3:84198522-84198541 | None:intergenic | 25.0% |
| !! | TTTTTATACCAGACAAAACA+AGG | - | chr7_3:84198521-84198540 | Msa1131660:intron | 25.0% |
| ! | TGCTATATATAGGGTAAAAA+GGG | + | chr7_3:84198663-84198682 | None:intergenic | 25.0% |
| ! | TTGCTATATATAGGGTAAAA+AGG | + | chr7_3:84198664-84198683 | None:intergenic | 25.0% |
| ! | TATAGCAATTGATACAATTG+GGG | - | chr7_3:84198676-84198695 | Msa1131660:intron | 25.0% |
| ! | TCTGTTTAAAAATTGCTGAT+TGG | - | chr7_3:84198990-84199009 | Msa1131660:CDS | 25.0% |
| !! | CTGTTTAAAAATTGCTGATT+GGG | - | chr7_3:84198991-84199010 | Msa1131660:CDS | 25.0% |
| ! | AGATGATAGAATTAAAACGA+TGG | - | chr7_3:84199251-84199270 | Msa1131660:CDS | 25.0% |
| ! | GGAATTGGTATTAAAAATTC+TGG | - | chr7_3:84199294-84199313 | Msa1131660:CDS | 25.0% |
| !!! | TTATTTGTTTTGTTTGGTTG+TGG | - | chr7_3:84199319-84199338 | Msa1131660:CDS | 25.0% |
| ! | GGTAATATAAATTCTGGTAA+TGG | - | chr7_3:84199371-84199390 | Msa1131660:intron | 25.0% |
| !!! | TGTTTTTGCTCTTTTATTTG+AGG | - | chr7_3:84199473-84199492 | Msa1131660:intron | 25.0% |
| ! | TCAACGAAATAATTTCACTA+TGG | - | chr7_3:84199513-84199532 | Msa1131660:CDS | 25.0% |
| ! | GAACAATGTTTGTGTAAATT+TGG | - | chr7_3:84199606-84199625 | Msa1131660:intron | 25.0% |
| !! | TTAGTCATTGCAAAGATTTT+TGG | + | chr7_3:84199643-84199662 | None:intergenic | 25.0% |
| ! | AAAAATCTTTGCAATGACTA+AGG | - | chr7_3:84199642-84199661 | Msa1131660:intron | 25.0% |
| !!! | AAAATTTTCAAGACTACTTC+TGG | + | chr7_3:84199778-84199797 | None:intergenic | 25.0% |
| ! | AATTCTACACAATAGATTAC+AGG | + | chr7_3:84200076-84200095 | None:intergenic | 25.0% |
| ! | GAACTGATCTATATTTATGT+AGG | - | chr7_3:84200242-84200261 | Msa1131660:intron | 25.0% |
| ! | ATGTTTGGAAAATTGGATTT+AGG | - | chr7_3:84200318-84200337 | Msa1131660:intron | 25.0% |
| ! | TGTTTGGAAAATTGGATTTA+GGG | - | chr7_3:84200319-84200338 | Msa1131660:intron | 25.0% |
| !! | CAAAATAATTTTCCTAACCT+TGG | + | chr7_3:84200411-84200430 | None:intergenic | 25.0% |
| !! | CAAGGTTAGGAAAATTATTT+TGG | - | chr7_3:84200409-84200428 | Msa1131660:intron | 25.0% |
| !!! | TCTCCTTTTTGTTTTGTTTA+TGG | - | chr7_3:84200499-84200518 | Msa1131660:intron | 25.0% |
| ! | ATTCAGATTTAAGTCCTTTA+AGG | - | chr7_3:84200737-84200756 | Msa1131660:intron | 25.0% |
| ! | AACTATACCATACAAAACAT+CGG | + | chr7_3:84200787-84200806 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTTAAGTGTGA+AGG | - | chr7_3:84200836-84200855 | Msa1131660:intron | 25.0% |
| !!! | GGTTCTTATTTTTCAGATAA+CGG | - | chr7_3:84201259-84201278 | Msa1131660:intron | 25.0% |
| !!! | GTAGATTTGATTTGTTTTCA+AGG | - | chr7_3:84201425-84201444 | Msa1131660:intron | 25.0% |
| !!! | TCAAGGATAGTTTTATGTTT+AGG | - | chr7_3:84201442-84201461 | Msa1131660:intron | 25.0% |
| !! | CAGTAATTATAGTTTGTATC+AGG | - | chr7_3:84201538-84201557 | Msa1131660:intron | 25.0% |
| !!! | TTGTTTAGTTTTAGCATCTT+TGG | - | chr7_3:84201583-84201602 | Msa1131660:intron | 25.0% |
| ! | ATTTACATACACATAAGTGA+TGG | - | chr7_3:84201703-84201722 | Msa1131660:intron | 25.0% |
| !!! | AAACTTTTAAAAGGGCTAAT+TGG | + | chr7_3:84201979-84201998 | None:intergenic | 25.0% |
| !!! | CATTGAGGAAACTTTTAAAA+GGG | + | chr7_3:84201987-84202006 | None:intergenic | 25.0% |
| !! | TCATTGAGGAAACTTTTAAA+AGG | + | chr7_3:84201988-84202007 | None:intergenic | 25.0% |
| ! | CGAATTTATGAATTTGATTG+AGG | - | chr7_3:84202299-84202318 | Msa1131660:intron | 25.0% |
| ! | TATATAGACAACCTTGTTAA+TGG | + | chr7_3:84202558-84202577 | None:intergenic | 25.0% |
| ! | TATGTAGTAACTTTGTCTAT+AGG | - | chr7_3:84202841-84202860 | Msa1131660:intron | 25.0% |
| !! | AACTTTGTCTATAGGAATTT+TGG | - | chr7_3:84202849-84202868 | Msa1131660:intron | 25.0% |
| !! | AAATGTTTGGGATATATCAT+AGG | + | chr7_3:84202917-84202936 | None:intergenic | 25.0% |
| ! | TTAAACTCTAATGATTGAGT+TGG | + | chr7_3:84203218-84203237 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | - | chr7_3:84203327-84203346 | Msa1131660:intron | 25.0% |
| ! | CGCAATTAAAATCAAAACAA+AGG | + | chr7_3:84203391-84203410 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | - | chr7_3:84203327-84203346 | Msa1131660:intron | 25.0% |
| !!! | TCACGTTTTAATGTTTGATT+TGG | - | chr7_3:84203942-84203961 | Msa1131660:intron | 25.0% |
| ! | TCGATTAGTATGATTTATTG+AGG | - | chr7_3:84203579-84203598 | Msa1131660:intron | 25.0% |
| !!! | AGCAGAAGTATTTCATATAT+AGG | - | chr7_3:84204203-84204222 | Msa1131660:intron | 25.0% |
| ! | AAGTATTTCATATATAGGTC+TGG | - | chr7_3:84204208-84204227 | Msa1131660:intron | 25.0% |
| !!! | TTTTTTTTGCAAAACTCAGA+AGG | - | chr7_3:84204363-84204382 | Msa1131660:intron | 25.0% |
| GTGATAAATCAAATACGCAA+TGG | + | chr7_3:84197739-84197758 | None:intergenic | 30.0% | |
| ! | AATAAAAATCAAGTGTTGCC+CGG | + | chr7_3:84197785-84197804 | None:intergenic | 30.0% |
| ! | TAAAACTCAACTCTCTTTTG+AGG | + | chr7_3:84197972-84197991 | None:intergenic | 30.0% |
| !!! | CTTTTGAACGATTAGTCTTT+TGG | + | chr7_3:84198242-84198261 | None:intergenic | 30.0% |
| !!! | CACATACGTTGATTTTTGAA+CGG | - | chr7_3:84198262-84198281 | Msa1131660:intron | 30.0% |
| ! | GGAAAAACGGATTTGTAATT+TGG | + | chr7_3:84198330-84198349 | None:intergenic | 30.0% |
| !!! | CTTTAGTTTTGAGGGAAAAA+CGG | + | chr7_3:84198343-84198362 | None:intergenic | 30.0% |
| ! | GTTTTTCCCTCAAAACTAAA+GGG | - | chr7_3:84198342-84198361 | Msa1131660:intron | 30.0% |
| !!! | CTTTTAACCCTTTAGTTTTG+AGG | + | chr7_3:84198352-84198371 | None:intergenic | 30.0% |
| GATGATAACTGAATCCTAAA+TGG | - | chr7_3:84198395-84198414 | Msa1131660:CDS | 30.0% | |
| TTTGTGTAAAGATTGAGGTA+TGG | - | chr7_3:84198444-84198463 | Msa1131660:CDS | 30.0% | |
| GGGCAAAATTGGAATTATAA+TGG | + | chr7_3:84198547-84198566 | None:intergenic | 30.0% | |
| CATTGGTGTAATTTCCAATT+TGG | - | chr7_3:84198587-84198606 | Msa1131660:intron | 30.0% | |
| TCAATAAGTAAAAAGGGATG+AGG | + | chr7_3:84198632-84198651 | None:intergenic | 30.0% | |
| ! | GAGGTGTCAATAAGTAAAAA+GGG | + | chr7_3:84198638-84198657 | None:intergenic | 30.0% |
| ! | TGAGGTGTCAATAAGTAAAA+AGG | + | chr7_3:84198639-84198658 | None:intergenic | 30.0% |
| ATAGCAATTGATACAATTGG+GGG | - | chr7_3:84198677-84198696 | Msa1131660:intron | 30.0% | |
| ! | AAGTTACTCTCAATTTTCTC+AGG | - | chr7_3:84198757-84198776 | Msa1131660:intron | 30.0% |
| ! | AAATTGAGATGATGATGAAG+AGG | + | chr7_3:84198800-84198819 | None:intergenic | 30.0% |
| AAACCAAAGAAAATCCCAAT+CGG | + | chr7_3:84198906-84198925 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTGCATGCATGGA+TGG | - | chr7_3:84199106-84199125 | Msa1131660:intron | 30.0% |
| ! | TGTGTATGATGATGAAACTT+TGG | - | chr7_3:84199182-84199201 | Msa1131660:intron | 30.0% |
| GGAAGTGGTAATATAAATTC+TGG | - | chr7_3:84199203-84199222 | Msa1131660:CDS | 30.0% | |
| !!! | CTGGTCTTATTTGTTTTGTT+TGG | - | chr7_3:84199313-84199332 | Msa1131660:CDS | 30.0% |
| ! | TGTGTATGATGATGAAACTT+TGG | - | chr7_3:84199182-84199201 | Msa1131660:intron | 30.0% |
| GGAAGTGGTAATATAAATTC+TGG | - | chr7_3:84199203-84199222 | Msa1131660:CDS | 30.0% | |
| GTAATGGTATTCATACTGTT+TGG | - | chr7_3:84199387-84199406 | Msa1131660:intron | 30.0% | |
| CAAGTCCAATTATACAATAC+CGG | - | chr7_3:84199729-84199748 | Msa1131660:intron | 30.0% | |
| ! | AATTATACAATACCGGTTGT+GGG | - | chr7_3:84199736-84199755 | Msa1131660:intron | 30.0% |
| ! | AATGTGCATTGATACTATGA+CGG | + | chr7_3:84199918-84199937 | None:intergenic | 30.0% |
| ! | TTAGTTATTCAGCTGAGTTT+TGG | - | chr7_3:84199989-84200008 | Msa1131660:intron | 30.0% |
| ! | ATTGTGTAGAATTCCTTTTC+TGG | - | chr7_3:84200083-84200102 | Msa1131660:intron | 30.0% |
| CTGTATCAAGGATTTGAAAA+AGG | - | chr7_3:84200289-84200308 | Msa1131660:intron | 30.0% | |
| ! | CATATGTTTGTTACCATTAC+TGG | + | chr7_3:84200369-84200388 | None:intergenic | 30.0% |
| CAGTAATGGTAACAAACATA+TGG | - | chr7_3:84200367-84200386 | Msa1131660:intron | 30.0% | |
| !!! | ATTATTTTGGATTTGTGTGG+TGG | - | chr7_3:84200422-84200441 | Msa1131660:intron | 30.0% |
| TTAAATCTGAATTCATGGGA+GGG | + | chr7_3:84200729-84200748 | None:intergenic | 30.0% | |
| GGACTTAAATCTGAATTCAT+GGG | + | chr7_3:84200733-84200752 | None:intergenic | 30.0% | |
| AGGACTTAAATCTGAATTCA+TGG | + | chr7_3:84200734-84200753 | None:intergenic | 30.0% | |
| ! | TCCTTTAAGGAAATTGAAGA+TGG | - | chr7_3:84200750-84200769 | Msa1131660:intron | 30.0% |
| TCCATCTTCAATTTCCTTAA+AGG | + | chr7_3:84200754-84200773 | None:intergenic | 30.0% | |
| ACTATACCATACAAAACATC+GGG | + | chr7_3:84200786-84200805 | None:intergenic | 30.0% | |
| TTCATCTTTAAGCACAAGAT+TGG | + | chr7_3:84200956-84200975 | None:intergenic | 30.0% | |
| TGAGTTAATATCAAGACAAC+AGG | + | chr7_3:84201147-84201166 | None:intergenic | 30.0% | |
| GTCCAATTGTTACAAACATT+CGG | + | chr7_3:84201289-84201308 | None:intergenic | 30.0% | |
| AATGTTTGTAACAATTGGAC+TGG | - | chr7_3:84201289-84201308 | Msa1131660:intron | 30.0% | |
| TTAAGCATCCAATTGTTGAT+AGG | - | chr7_3:84201332-84201351 | Msa1131660:intron | 30.0% | |
| ! | TCCAATTGTTGATAGGTTTA+AGG | - | chr7_3:84201339-84201358 | Msa1131660:intron | 30.0% |
| ACTATTTATGCAACTACGTA+AGG | + | chr7_3:84201631-84201650 | None:intergenic | 30.0% | |
| ! | TGGTAGAGTCATGATTATTT+TGG | - | chr7_3:84201768-84201787 | Msa1131660:intron | 30.0% |
| GTAAACTATAATGATGCCAT+TGG | - | chr7_3:84201809-84201828 | Msa1131660:intron | 30.0% | |
| TAAAAAGAGCAGAATTTCAC+AGG | - | chr7_3:84201853-84201872 | Msa1131660:intron | 30.0% | |
| CTGACATCAAAAGTTATGTA+TGG | - | chr7_3:84202021-84202040 | Msa1131660:intron | 30.0% | |
| AAAATGATTGTACACAACCA+TGG | + | chr7_3:84202088-84202107 | None:intergenic | 30.0% | |
| ! | TTCGAGAATTCATCATTTTG+CGG | + | chr7_3:84202255-84202274 | None:intergenic | 30.0% |
| AAATTCATAAATTCGCCGAT+TGG | + | chr7_3:84202294-84202313 | None:intergenic | 30.0% | |
| AACACATATTGCATTACTGT+TGG | - | chr7_3:84202408-84202427 | Msa1131660:intron | 30.0% | |
| ATGTTGAAGTTCCATTAACA+AGG | - | chr7_3:84202544-84202563 | Msa1131660:intron | 30.0% | |
| !!! | TGTGATTAGTTGATAGCTTT+TGG | - | chr7_3:84202586-84202605 | Msa1131660:intron | 30.0% |
| !!! | TTAGTTGATAGCTTTTGGTT+TGG | - | chr7_3:84202591-84202610 | Msa1131660:intron | 30.0% |
| ! | TTTTTCCTTCAGATATAAGG+TGG | - | chr7_3:84202667-84202686 | Msa1131660:intron | 30.0% |
| ! | TGTGTATGATGGTGATAAAT+CGG | - | chr7_3:84202700-84202719 | Msa1131660:intron | 30.0% |
| ! | ATAAATCGGACTTTGTGTTT+TGG | - | chr7_3:84202714-84202733 | Msa1131660:intron | 30.0% |
| ! | TAAATCGGACTTTGTGTTTT+GGG | - | chr7_3:84202715-84202734 | Msa1131660:intron | 30.0% |
| AATCAAATTTACCTCTTGCA+TGG | + | chr7_3:84202792-84202811 | None:intergenic | 30.0% | |
| ATAATTGTGTTTGTTCCTGA+AGG | - | chr7_3:84202877-84202896 | Msa1131660:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | - | chr7_3:84203334-84203353 | Msa1131660:intron | 30.0% | |
| TCACGGTTTAATGTTTCATT+TGG | - | chr7_3:84203551-84203570 | Msa1131660:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | - | chr7_3:84203334-84203353 | Msa1131660:intron | 30.0% | |
| GGTGATAAGTTATGATAGAT+TGG | - | chr7_3:84203991-84204010 | Msa1131660:intron | 30.0% | |
| !! | TTATGATAGATTGGTTTCCT+TGG | - | chr7_3:84204000-84204019 | Msa1131660:intron | 30.0% |
| TTTCATATATAGGTCTGGTA+AGG | - | chr7_3:84204213-84204232 | Msa1131660:intron | 30.0% | |
| CTAATCAAGTTAAACCCAAA+AGG | - | chr7_3:84204270-84204289 | Msa1131660:intron | 30.0% | |
| AAAGGTTGTGACTCATATAT+AGG | - | chr7_3:84204420-84204439 | Msa1131660:intron | 30.0% | |
| ACTGATAAGGAAATTGTTTG+TGG | - | chr7_3:84204485-84204504 | Msa1131660:intron | 30.0% | |
| !!! | GAGAGTTGAGTTTTAGTTGT+AGG | - | chr7_3:84197977-84197996 | Msa1131660:intron | 35.0% |
| GCATAGAATCTTGTAGTACA+TGG | + | chr7_3:84198063-84198082 | None:intergenic | 35.0% | |
| GAAAGTTCTTTAATAGAGGG+AGG | - | chr7_3:84198113-84198132 | Msa1131660:intron | 35.0% | |
| ! | CGTTTTTCCCTCAAAACTAA+AGG | - | chr7_3:84198341-84198360 | Msa1131660:intron | 35.0% |
| !!! | TATAATGGCCTTGTTTTGTC+TGG | + | chr7_3:84198532-84198551 | None:intergenic | 35.0% |
| ATATAGGGTAAAAAGGGATG+AGG | + | chr7_3:84198657-84198676 | None:intergenic | 35.0% | |
| TAGCAATTGATACAATTGGG+GGG | - | chr7_3:84198678-84198697 | Msa1131660:intron | 35.0% | |
| !!! | GGATGTTGATTTTGTTGAGT+TGG | - | chr7_3:84199127-84199146 | Msa1131660:intron | 35.0% |
| !!! | TTGATTTTGTTGAGTTGGTG+TGG | - | chr7_3:84199132-84199151 | Msa1131660:intron | 35.0% |
| ! | TGATGATGAAACTTTGGAAG+TGG | - | chr7_3:84199188-84199207 | Msa1131660:intron | 35.0% |
| ! | AAACGATGGAACATTGATTG+TGG | - | chr7_3:84199265-84199284 | Msa1131660:CDS | 35.0% |
| ! | TGATGATGAAACTTTGGAAG+TGG | - | chr7_3:84199188-84199207 | Msa1131660:intron | 35.0% |
| AGAGTTAAGGTTCAGATGTT+TGG | - | chr7_3:84199546-84199565 | Msa1131660:CDS | 35.0% | |
| GAGTTAAGGTTCAGATGTTT+GGG | - | chr7_3:84199547-84199566 | Msa1131660:CDS | 35.0% | |
| CACAACCGGTATTGTATAAT+TGG | + | chr7_3:84199737-84199756 | None:intergenic | 35.0% | |
| ! | CAATTATACAATACCGGTTG+TGG | - | chr7_3:84199735-84199754 | Msa1131660:intron | 35.0% |
| ! | ATTATACAATACCGGTTGTG+GGG | - | chr7_3:84199737-84199756 | Msa1131660:intron | 35.0% |
| TTTGTCAATGCTGTTATTGC+TGG | - | chr7_3:84199820-84199839 | Msa1131660:intron | 35.0% | |
| CTATTCAATGATTCTTTGGG+AGG | - | chr7_3:84199940-84199959 | Msa1131660:intron | 35.0% | |
| GAATAACTAAGAGTCTTGCT+CGG | + | chr7_3:84199979-84199998 | None:intergenic | 35.0% | |
| !!! | TTCAGCTGAGTTTTGGAATT+TGG | - | chr7_3:84199996-84200015 | Msa1131660:intron | 35.0% |
| CATTGATGCTATACCAGAAA+AGG | + | chr7_3:84200099-84200118 | None:intergenic | 35.0% | |
| !! | ATTTGGTTGATTTGGTTACG+TGG | - | chr7_3:84200163-84200182 | Msa1131660:intron | 35.0% |
| !!! | TTGGTTACGTGGTTTTGTTA+AGG | - | chr7_3:84200174-84200193 | Msa1131660:intron | 35.0% |
| ATGTAGGTTTCACAATGTCT+AGG | - | chr7_3:84200258-84200277 | Msa1131660:intron | 35.0% | |
| TGTAGGTTTCACAATGTCTA+GGG | - | chr7_3:84200259-84200278 | Msa1131660:intron | 35.0% | |
| ACTTATTATTGGAGATGCCA+AGG | - | chr7_3:84200391-84200410 | Msa1131660:intron | 35.0% | |
| TCAATGACTTCAAATGCTCA+AGG | + | chr7_3:84200566-84200585 | None:intergenic | 35.0% | |
| CTTAAATCTGAATTCATGGG+AGG | + | chr7_3:84200730-84200749 | None:intergenic | 35.0% | |
| TTAAGCACAAGATTGGTACA+CGG | + | chr7_3:84200949-84200968 | None:intergenic | 35.0% | |
| AGCCGAATGTTTGTAACAAT+TGG | - | chr7_3:84201284-84201303 | Msa1131660:intron | 35.0% | |
| GCCTTAAACCTATCAACAAT+TGG | + | chr7_3:84201343-84201362 | None:intergenic | 35.0% | |
| ! | TTGTTGATAGGTTTAAGGCT+AGG | - | chr7_3:84201344-84201363 | Msa1131660:intron | 35.0% |
| !! | TAGTTTGTATCAGGCTGTTT+TGG | - | chr7_3:84201547-84201566 | Msa1131660:intron | 35.0% |
| ATCTTTGGCAGACTTAAGAT+AGG | - | chr7_3:84201598-84201617 | Msa1131660:intron | 35.0% | |
| ! | AATTTCACAGGATGATGATG+CGG | - | chr7_3:84201865-84201884 | Msa1131660:intron | 35.0% |
| GAAGAATTGAGTGATCATTG+AGG | + | chr7_3:84202002-84202021 | None:intergenic | 35.0% | |
| TTTAGACACTTAACCAACCA+TGG | - | chr7_3:84202068-84202087 | Msa1131660:intron | 35.0% | |
| AAGGAATGTCTTCAGATTCT+TGG | - | chr7_3:84202740-84202759 | Msa1131660:intron | 35.0% | |
| !! | CAATTTACTTGGTCTTGAGT+TGG | - | chr7_3:84202940-84202959 | Msa1131660:intron | 35.0% |
| TTAATTCTCTGAATCACAGC+AGG | + | chr7_3:84203028-84203047 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | + | chr7_3:84203501-84203520 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | + | chr7_3:84203501-84203520 | None:intergenic | 35.0% | |
| TATAGGTCTGGTAAGGAAAT+TGG | - | chr7_3:84204220-84204239 | Msa1131660:intron | 35.0% | |
| TTGTGACTCATATATAGGTC+TGG | - | chr7_3:84204425-84204444 | Msa1131660:intron | 35.0% | |
| ! | TTTTTCGCTCTTGTGTTAAC+AGG | - | chr7_3:84204630-84204649 | Msa1131660:intron | 35.0% |
| ! | TTTTCGCTCTTGTGTTAACA+GGG | - | chr7_3:84204631-84204650 | Msa1131660:intron | 35.0% |
| TTAACGGAAGATAACTGTGT+TGG | + | chr7_3:84204778-84204797 | None:intergenic | 35.0% | |
| ACAGTTATCTTCCGTTAAGT+TGG | - | chr7_3:84204780-84204799 | Msa1131660:intron | 35.0% | |
| AGTGCATTTAGCCAACTTAA+CGG | + | chr7_3:84204794-84204813 | None:intergenic | 35.0% | |
| GCACTTATCAAGGGCAAAAT+TGG | + | chr7_3:84198558-84198577 | None:intergenic | 40.0% | |
| CCCTTTGATGCACTTATCAA+GGG | + | chr7_3:84198567-84198586 | None:intergenic | 40.0% | |
| CCCTTGATAAGTGCATCAAA+GGG | - | chr7_3:84198564-84198583 | Msa1131660:intron | 40.0% | |
| ! | ATAAGTGCATCAAAGGGCAT+TGG | - | chr7_3:84198570-84198589 | Msa1131660:intron | 40.0% |
| ! | TGAGATGATGATGAAGAGGA+TGG | + | chr7_3:84198796-84198815 | None:intergenic | 40.0% |
| TTCATGCATGTTAGCCGATT+GGG | - | chr7_3:84198889-84198908 | Msa1131660:intron | 40.0% | |
| ! | TAGCCGATTGGGATTTTCTT+TGG | - | chr7_3:84198900-84198919 | Msa1131660:intron | 40.0% |
| CAAACAACAGTACGCATACA+TGG | + | chr7_3:84199070-84199089 | None:intergenic | 40.0% | |
| CATGTATGCGTACTGTTGTT+TGG | - | chr7_3:84199068-84199087 | Msa1131660:intron | 40.0% | |
| ! | GAACATTGATTGTGGTGACT+TGG | - | chr7_3:84199273-84199292 | Msa1131660:CDS | 40.0% |
| ! | TGATTGTGGTGACTTGGAAT+TGG | - | chr7_3:84199279-84199298 | Msa1131660:CDS | 40.0% |
| GTACCAAACAGAGTGAATCT+GGG | + | chr7_3:84199581-84199600 | None:intergenic | 40.0% | |
| TGTACCAAACAGAGTGAATC+TGG | + | chr7_3:84199582-84199601 | None:intergenic | 40.0% | |
| ATTGCACGAATGACATGTTC+AGG | - | chr7_3:84199871-84199890 | Msa1131660:intron | 40.0% | |
| TAGGGACTATGACTGTATCA+AGG | - | chr7_3:84200277-84200296 | Msa1131660:intron | 40.0% | |
| ! | GATTTAGGGTTCTTGACTCA+TGG | - | chr7_3:84200333-84200352 | Msa1131660:intron | 40.0% |
| TTATTGGAGATGCCAAGGTT+AGG | - | chr7_3:84200396-84200415 | Msa1131660:intron | 40.0% | |
| ATCGCATTCATGCCATAACT+CGG | - | chr7_3:84200532-84200551 | Msa1131660:intron | 40.0% | |
| GCATGTTGATCATCCGTTTA+AGG | - | chr7_3:84200650-84200669 | Msa1131660:intron | 40.0% | |
| TGTTGATCATCCGTTTAAGG+TGG | - | chr7_3:84200653-84200672 | Msa1131660:intron | 40.0% | |
| AAGCCAAACACCACCTTAAA+CGG | + | chr7_3:84200666-84200685 | None:intergenic | 40.0% | |
| ! | TTTAAGGTGGTGTTTGGCTT+TGG | - | chr7_3:84200666-84200685 | Msa1131660:intron | 40.0% |
| ! | TTCAAGCCCGATGTTTTGTA+TGG | - | chr7_3:84200777-84200796 | Msa1131660:intron | 40.0% |
| TCATGAGATCGTAAAGACGT+CGG | - | chr7_3:84200903-84200922 | Msa1131660:intron | 40.0% | |
| CTTGCTGAACGAAAGAATAC+AGG | - | chr7_3:84201120-84201139 | Msa1131660:intron | 40.0% | |
| ! | GTGTTGCTGATATGTAGCTT+TGG | - | chr7_3:84201508-84201527 | Msa1131660:intron | 40.0% |
| AACACTCTGATATAGAGTCG+AGG | + | chr7_3:84201676-84201695 | None:intergenic | 40.0% | |
| ACATACACATAAGTGATGGC+TGG | - | chr7_3:84201707-84201726 | Msa1131660:intron | 40.0% | |
| ATGATGCCATTGGATCACTT+TGG | - | chr7_3:84201819-84201838 | Msa1131660:intron | 40.0% | |
| ATGCAACCAAAGTGATCCAA+TGG | + | chr7_3:84201828-84201847 | None:intergenic | 40.0% | |
| ! | CTGACTTGATCAAGATTGTG+CGG | - | chr7_3:84201940-84201959 | Msa1131660:intron | 40.0% |
| TGATTGTACACAACCATGGT+TGG | + | chr7_3:84202084-84202103 | None:intergenic | 40.0% | |
| ! | TTTTGCAGTCTTCAAGCTCA+TGG | - | chr7_3:84202180-84202199 | Msa1131660:intron | 40.0% |
| CTTACTCAGACTTTGTGTCA+AGG | - | chr7_3:84202210-84202229 | Msa1131660:intron | 40.0% | |
| ! | AAGGTTCAAGTTCTTCTCAG+AGG | - | chr7_3:84202229-84202248 | Msa1131660:intron | 40.0% |
| CTGTCTCAAGTTAAGCCAAT+CGG | - | chr7_3:84202276-84202295 | Msa1131660:intron | 40.0% | |
| TAATACCAGCCACTCTGATT+AGG | + | chr7_3:84202453-84202472 | None:intergenic | 40.0% | |
| CTATAAATGCACATGTGGAG+AGG | - | chr7_3:84202521-84202540 | Msa1131660:CDS | 40.0% | |
| CACAACCACCTTATATCTGA+AGG | + | chr7_3:84202675-84202694 | None:intergenic | 40.0% | |
| GTTGTGCAAGTTGTGTATGA+TGG | - | chr7_3:84202689-84202708 | Msa1131660:intron | 40.0% | |
| TCTTAGAAAGACCATGCAAG+AGG | - | chr7_3:84202778-84202797 | Msa1131660:intron | 40.0% | |
| TTGTGTTTGTTCCTGAAGGT+TGG | - | chr7_3:84202881-84202900 | Msa1131660:intron | 40.0% | |
| ACAGATGACTGACGATAATG+TGG | + | chr7_3:84202986-84203005 | None:intergenic | 40.0% | |
| AGATGTACAAGAAGTTGACG+AGG | - | chr7_3:84203078-84203097 | Msa1131660:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | - | chr7_3:84203265-84203284 | Msa1131660:intron | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | + | chr7_3:84203278-84203297 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | - | chr7_3:84203408-84203427 | Msa1131660:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | - | chr7_3:84203488-84203507 | Msa1131660:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | - | chr7_3:84203265-84203284 | Msa1131660:intron | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | + | chr7_3:84203278-84203297 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | - | chr7_3:84203408-84203427 | Msa1131660:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | - | chr7_3:84203488-84203507 | Msa1131660:intron | 40.0% | |
| ATGAAACCTTTACCCAGTGT+AGG | - | chr7_3:84204144-84204163 | Msa1131660:intron | 40.0% | |
| TTCCACATGAGGTCCTAATT+GGG | - | chr7_3:84204170-84204189 | Msa1131660:intron | 40.0% | |
| GCTATGATATCACCCCAATT+AGG | + | chr7_3:84204186-84204205 | None:intergenic | 40.0% | |
| AAGTTAAACCCAAAAGGCAG+TGG | - | chr7_3:84204276-84204295 | Msa1131660:intron | 40.0% | |
| AGTTAAACCCAAAAGGCAGT+GGG | - | chr7_3:84204277-84204296 | Msa1131660:intron | 40.0% | |
| ACTTCTGCTCAATGTCTGAA+AGG | - | chr7_3:84204402-84204421 | Msa1131660:intron | 40.0% | |
| ! | ATATAGGTCTGGCTTCTGAA+AGG | - | chr7_3:84204436-84204455 | Msa1131660:intron | 40.0% |
| ! | GGCTTCTGAAAGGTTTAACT+TGG | - | chr7_3:84204446-84204465 | Msa1131660:intron | 40.0% |
| GTACTCACATGTGACTGATA+AGG | - | chr7_3:84204472-84204491 | Msa1131660:intron | 40.0% | |
| TTTCGCTCTTGTGTTAACAG+GGG | - | chr7_3:84204632-84204651 | Msa1131660:intron | 40.0% | |
| AAAAGTGGTCTGGATCAAAG+TGG | - | chr7_3:84204673-84204692 | Msa1131660:intron | 40.0% | |
| AGTACATGGATAGCCGTCTT+AGG | + | chr7_3:84198049-84198068 | None:intergenic | 45.0% | |
| GCCCTTGATAAGTGCATCAA+AGG | - | chr7_3:84198563-84198582 | Msa1131660:intron | 45.0% | |
| GCCCTTTGATGCACTTATCA+AGG | + | chr7_3:84198568-84198587 | None:intergenic | 45.0% | |
| GATGATGAAGAGGATGGAAC+AGG | + | chr7_3:84198790-84198809 | None:intergenic | 45.0% | |
| CTTCATGCATGTTAGCCGAT+TGG | - | chr7_3:84198888-84198907 | Msa1131660:intron | 45.0% | |
| ACAACAGTACGCATACATGG+AGG | + | chr7_3:84199067-84199086 | None:intergenic | 45.0% | |
| GGTTCAGATGTTTGGGAACT+AGG | - | chr7_3:84199554-84199573 | Msa1131660:CDS | 45.0% | |
| TGGATTGTCACTGCCAGTAA+TGG | - | chr7_3:84200353-84200372 | Msa1131660:intron | 45.0% | |
| AAGGTCTCTGTTCCGAGTTA+TGG | + | chr7_3:84200547-84200566 | None:intergenic | 45.0% | |
| ! | CATCCGTTTAAGGTGGTGTT+TGG | - | chr7_3:84200660-84200679 | Msa1131660:intron | 45.0% |
| ! | ATCGTAAAGACGTCGGTGTT+TGG | - | chr7_3:84200910-84200929 | Msa1131660:intron | 45.0% |
| GTGTCTGAGAATGTTGTTGC+TGG | - | chr7_3:84201034-84201053 | Msa1131660:intron | 45.0% | |
| GAATGTTGTTGCTGGTGTAG+TGG | - | chr7_3:84201042-84201061 | Msa1131660:intron | 45.0% | |
| ACCTGCTTGATGCGACATTA+TGG | - | chr7_3:84201067-84201086 | Msa1131660:intron | 45.0% | |
| CCTGCTTGATGCGACATTAT+GGG | - | chr7_3:84201068-84201087 | Msa1131660:intron | 45.0% | |
| CATGCACAGTGTAAACTTGC+TGG | - | chr7_3:84201165-84201184 | Msa1131660:intron | 45.0% | |
| GCAACACACAACTATGCATC+TGG | + | chr7_3:84201495-84201514 | None:intergenic | 45.0% | |
| !! | CCTTGAAGGCTTTGGACATT+TGG | + | chr7_3:84202487-84202506 | None:intergenic | 45.0% |
| CCAAATGTCCAAAGCCTTCA+AGG | - | chr7_3:84202484-84202503 | Msa1131660:CDS | 45.0% | |
| CCATTTGACCTTGAAGGCTT+TGG | + | chr7_3:84202495-84202514 | None:intergenic | 45.0% | |
| CCAAAGCCTTCAAGGTCAAA+TGG | - | chr7_3:84202492-84202511 | Msa1131660:CDS | 45.0% | |
| GCTGGCTATAAATGCACATG+TGG | - | chr7_3:84202516-84202535 | Msa1131660:CDS | 45.0% | |
| !!! | GGACTTTGTGTTTTGGGACA+AGG | - | chr7_3:84202721-84202740 | Msa1131660:intron | 45.0% |
| GATCATCTTCACCAACCTTC+AGG | + | chr7_3:84202895-84202914 | None:intergenic | 45.0% | |
| TATCGTCAGTCATCTGTGCA+AGG | - | chr7_3:84202989-84203008 | Msa1131660:intron | 45.0% | |
| ACTGCATACCATCAGGATGA+AGG | + | chr7_3:84203057-84203076 | None:intergenic | 45.0% | |
| ACATCTGACTGCATACCATC+AGG | + | chr7_3:84203064-84203083 | None:intergenic | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | - | chr7_3:84203270-84203289 | Msa1131660:intron | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | - | chr7_3:84203270-84203289 | Msa1131660:intron | 45.0% | |
| ! | CTGACTGATTCAAAGTGCCA+AGG | + | chr7_3:84204020-84204039 | None:intergenic | 45.0% |
| TGGCACTTTGAATCAGTCAG+AGG | - | chr7_3:84204020-84204039 | Msa1131660:intron | 45.0% | |
| ! | GAAGTACCTACACTGGGTAA+AGG | + | chr7_3:84204153-84204172 | None:intergenic | 45.0% |
| !! | CATGTGGAAGTACCTACACT+GGG | + | chr7_3:84204159-84204178 | None:intergenic | 45.0% |
| !! | TCATGTGGAAGTACCTACAC+TGG | + | chr7_3:84204160-84204179 | None:intergenic | 45.0% |
| AGTGTAGGTACTTCCACATG+AGG | - | chr7_3:84204159-84204178 | Msa1131660:intron | 45.0% | |
| CTTCCACATGAGGTCCTAAT+TGG | - | chr7_3:84204169-84204188 | Msa1131660:intron | 45.0% | |
| TCCACATGAGGTCCTAATTG+GGG | - | chr7_3:84204171-84204190 | Msa1131660:intron | 45.0% | |
| GTCTGGTAAGGAAATTGGTC+TGG | - | chr7_3:84204225-84204244 | Msa1131660:intron | 45.0% | |
| TTGCAAAACTCAGAAGGCAG+AGG | - | chr7_3:84204369-84204388 | Msa1131660:intron | 45.0% | |
| TGCAAAACTCAGAAGGCAGA+GGG | - | chr7_3:84204370-84204389 | Msa1131660:intron | 45.0% | |
| GTTTCTGTGAGTGGGAAAAG+TGG | - | chr7_3:84204658-84204677 | Msa1131660:intron | 45.0% | |
| TCAGCAAATGAACGTCTTGC+AGG | + | chr7_3:84204718-84204737 | None:intergenic | 45.0% | |
| ! | GTTGGCTAAATGCACTGACA+AGG | - | chr7_3:84204798-84204817 | Msa1131660:intron | 45.0% |
| !! | ATTGAAAATAAAAATAAAAA+TGG | + | chr7_3:84197620-84197639 | None:intergenic | 5.0% |
| !!! | CTCAACTCTCTTTTGAGGCG+TGG | + | chr7_3:84197967-84197986 | None:intergenic | 50.0% |
| AGAGGGAGGAAGACAGAAGA+AGG | - | chr7_3:84198127-84198146 | Msa1131660:intron | 50.0% | |
| GGACCCAGATTCACTCTGTT+TGG | - | chr7_3:84199575-84199594 | Msa1131660:intron | 50.0% | |
| CCATTTCTGATCCCCACAAC+CGG | + | chr7_3:84199751-84199770 | None:intergenic | 50.0% | |
| CGGTTGTGGGGATCAGAAAT+GGG | - | chr7_3:84199749-84199768 | Msa1131660:intron | 50.0% | |
| !! | GGTGTTTGGCTTTGGTACGA+AGG | - | chr7_3:84200674-84200693 | Msa1131660:intron | 50.0% |
| ! | AAGACGTCGGTGTTTGGATC+TGG | - | chr7_3:84200916-84200935 | Msa1131660:intron | 50.0% |
| CCCATAATGTCGCATCAAGC+AGG | + | chr7_3:84201071-84201090 | None:intergenic | 50.0% | |
| GACATCAACCTAGCAGCAAC+AGG | + | chr7_3:84201473-84201492 | None:intergenic | 50.0% | |
| CCAGCACCATTTGACCTTGA+AGG | + | chr7_3:84202501-84202520 | None:intergenic | 50.0% | |
| CCTTCAAGGTCAAATGGTGC+TGG | - | chr7_3:84202498-84202517 | Msa1131660:CDS | 50.0% | |
| AAGCGTCACCTTCATCCTGA+TGG | - | chr7_3:84203046-84203065 | Msa1131660:intron | 50.0% | |
| ACCCCAATTAGGACCTCATG+TGG | + | chr7_3:84204175-84204194 | None:intergenic | 50.0% | |
| ! | TTCCAGACCCACTGCCTTTT+GGG | + | chr7_3:84204287-84204306 | None:intergenic | 50.0% |
| ! | TTTCCAGACCCACTGCCTTT+TGG | + | chr7_3:84204288-84204307 | None:intergenic | 50.0% |
| !! | AGGGGTCTGTTTCTGTGAGT+GGG | - | chr7_3:84204650-84204669 | Msa1131660:intron | 50.0% |
| TGTGAGTGGGAAAAGTGGTC+TGG | - | chr7_3:84204663-84204682 | Msa1131660:intron | 50.0% | |
| GTGGTCTGGATCAAAGTGGT+AGG | - | chr7_3:84204677-84204696 | Msa1131660:intron | 50.0% | |
| CCGGTTGTGGGGATCAGAAA+TGG | - | chr7_3:84199748-84199767 | Msa1131660:intron | 55.0% | |
| GCTTTGGTACGAAGGTGACG+AGG | - | chr7_3:84200682-84200701 | Msa1131660:intron | 55.0% | |
| AGGTGTGTCCTGTTGCTGCT+AGG | - | chr7_3:84201462-84201481 | Msa1131660:intron | 55.0% | |
| AACCCAAAAGGCAGTGGGTC+TGG | - | chr7_3:84204282-84204301 | Msa1131660:intron | 55.0% | |
| !! | CAGGGGTCTGTTTCTGTGAG+TGG | - | chr7_3:84204649-84204668 | Msa1131660:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 84197449 | 84204825 | 84197449 | ID=Msa1131660;Name=Msa1131660 |
| chr7_3 | mRNA | 84197449 | 84204825 | 84197449 | ID=Msa1131660-mRNA-1;Parent=Msa1131660;Name=Msa1131660-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.14|0|0.62|0.71|0.87|8|0|260 |
| chr7_3 | exon | 84204822 | 84204825 | 84204822 | ID=Msa1131660-mRNA-1:exon:25095;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84203312 | 84203319 | 84203312 | ID=Msa1131660-mRNA-1:exon:25094;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84202431 | 84202550 | 84202431 | ID=Msa1131660-mRNA-1:exon:25093;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84199475 | 84199588 | 84199475 | ID=Msa1131660-mRNA-1:exon:25092;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84199193 | 84199375 | 84199193 | ID=Msa1131660-mRNA-1:exon:25091;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84198988 | 84199077 | 84198988 | ID=Msa1131660-mRNA-1:exon:25090;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84198374 | 84198463 | 84198374 | ID=Msa1131660-mRNA-1:exon:25089;Parent=Msa1131660-mRNA-1 |
| chr7_3 | exon | 84197449 | 84197622 | 84197449 | ID=Msa1131660-mRNA-1:exon:25088;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84204822 | 84204825 | 84204822 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84203312 | 84203319 | 84203312 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84202431 | 84202550 | 84202431 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84199475 | 84199588 | 84199475 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84199193 | 84199375 | 84199193 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84198988 | 84199077 | 84198988 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84198374 | 84198463 | 84198374 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| chr7_3 | CDS | 84197449 | 84197622 | 84197449 | ID=Msa1131660-mRNA-1:cds;Parent=Msa1131660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
