AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0872080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872080 MtrunA17_Chr6g0453321 93.915 493 30 0 2 494 3 495 0.0 945
Msa0872080 MtrunA17_Chr7g0217581 55.599 509 187 9 1 494 99 583 1.71e-175 506
Msa0872080 MtrunA17_Chr4g0042481 44.048 504 226 17 2 492 3 463 2.58e-117 353
Msa0872080 MtrunA17_Chr3g0092111 42.745 510 230 18 1 494 2 465 5.27e-96 298
Msa0872080 MtrunA17_Chr7g0254161 37.195 492 212 21 4 474 8 423 1.50e-66 220
Msa0872080 MtrunA17_Chr8g0355261 37.209 387 175 15 122 493 105 438 1.13e-64 216
Msa0872080 MtrunA17_Chr5g0417601 36.342 421 146 12 73 492 80 379 5.75e-64 212
Msa0872080 MtrunA17_Chr5g0417561 35.885 418 131 17 85 492 71 361 7.84e-56 190
Msa0872080 MtrunA17_Chr5g0417551 35.507 414 138 16 85 492 79 369 3.68e-55 189
Msa0872080 MtrunA17_Chr6g0460731 39.683 252 116 8 92 327 51 282 1.44e-44 160
Msa0872080 MtrunA17_Chr6g0460721 41.393 244 110 9 95 329 47 266 2.21e-42 153
Msa0872080 MtrunA17_Chr5g0417571 43.137 204 102 5 8 199 7 208 7.30e-41 149
Msa0872080 MtrunA17_Chr2g0283811 81.538 65 11 1 125 188 36 100 8.56e-34 125
Msa0872080 MtrunA17_Chr3g0127201 67.742 62 20 0 130 191 22 83 5.75e-26 107
Msa0872080 MtrunA17_Chr8g0374251 75.926 54 13 0 135 188 68 121 2.86e-25 106
Msa0872080 MtrunA17_Chr8g0374111 44.915 118 53 3 135 243 29 143 3.23e-25 103
Msa0872080 MtrunA17_Chr2g0328021 50.549 91 44 1 99 188 25 115 3.94e-25 105
Msa0872080 MtrunA17_Chr4g0010151 68.966 58 18 0 131 188 78 135 5.51e-25 106
Msa0872080 MtrunA17_Chr8g0346551 50.538 93 36 1 130 212 19 111 5.75e-25 103
Msa0872080 MtrunA17_Chr4g0031411 51.087 92 43 1 128 217 68 159 1.77e-24 103
Msa0872080 MtrunA17_Chr2g0326001 69.492 59 18 0 130 188 35 93 1.86e-24 103
Msa0872080 MtrunA17_Chr2g0308011 77.551 49 11 0 135 183 37 85 2.33e-24 100
Msa0872080 MtrunA17_Chr8g0341671 75.000 52 13 0 135 186 20 71 2.66e-24 100
Msa0872080 MtrunA17_Chr4g0061761 69.811 53 16 0 133 185 38 90 7.85e-24 102
Msa0872080 MtrunA17_Chr1g0188851 62.712 59 22 0 129 187 37 95 2.02e-23 100
Msa0872080 MtrunA17_Chr7g0223311 76.471 51 12 0 137 187 79 129 2.48e-23 101
Msa0872080 MtrunA17_Chr4g0047001 75.000 52 13 0 137 188 57 108 3.58e-23 101
Msa0872080 MtrunA17_Chr3g0126201 58.108 74 20 1 137 210 53 115 4.14e-23 100
Msa0872080 MtrunA17_Chr8g0367161 47.368 95 45 2 123 217 20 109 4.79e-23 100
Msa0872080 MtrunA17_Chr5g0411951 67.273 55 18 0 131 185 39 93 6.26e-23 99.8
Msa0872080 MtrunA17_Chr7g0237921 71.154 52 15 0 137 188 78 129 1.34e-22 99.0
Msa0872080 MtrunA17_Chr2g0282511 55.844 77 31 1 107 183 20 93 1.49e-22 98.2
Msa0872080 MtrunA17_Chr3g0117601 45.455 110 53 1 97 206 30 132 1.72e-22 98.6
Msa0872080 MtrunA17_Chr1g0177251 54.321 81 34 2 130 207 6 86 1.76e-22 97.4
Msa0872080 MtrunA17_Chr4g0030051 65.625 64 21 1 125 187 30 93 3.00e-22 96.7
Msa0872080 MtrunA17_Chr4g0047761 66.667 54 18 0 135 188 72 125 9.48e-22 95.9
Msa0872080 MtrunA17_Chr2g0282051 73.077 52 13 1 137 188 48 98 9.64e-22 95.1
Msa0872080 MtrunA17_Chr2g0282441 70.000 50 15 0 137 186 27 76 2.10e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0872080 AT5G39660.3 41.887 530 193 24 5 494 3 457 1.05e-103 318
Msa0872080 AT5G39660.1 41.887 530 193 24 5 494 3 457 1.05e-103 318
Msa0872080 AT5G39660.2 41.887 530 193 24 5 494 3 457 1.05e-103 318
Msa0872080 AT3G47500.1 39.370 508 228 19 1 492 3 446 1.67e-80 258
Msa0872080 AT5G62430.1 36.896 393 121 17 105 492 26 296 2.29e-52 179
Msa0872080 AT1G69570.1 34.677 372 137 14 128 493 125 396 6.59e-47 168
Msa0872080 AT1G26790.1 57.463 134 48 3 80 209 59 187 1.02e-37 142
Msa0872080 AT1G29160.1 86.667 60 8 0 129 188 56 115 3.94e-35 129
Msa0872080 AT2G34140.1 83.333 60 10 0 129 188 52 111 1.92e-33 125
Msa0872080 AT5G60850.1 61.429 70 27 0 123 192 39 108 4.45e-26 108
Msa0872080 AT1G51700.1 72.881 59 15 1 135 192 33 91 2.02e-25 103
Msa0872080 AT3G55370.1 60.870 69 27 0 131 199 72 140 3.46e-25 106
Msa0872080 AT3G55370.2 60.870 69 27 0 131 199 72 140 3.49e-25 107
Msa0872080 AT5G60200.1 55.172 87 37 2 131 215 51 137 5.15e-25 104
Msa0872080 AT3G55370.3 60.870 69 27 0 131 199 117 185 5.86e-25 106
Msa0872080 AT3G21270.1 77.358 53 12 0 135 187 29 81 1.31e-24 101
Msa0872080 AT1G07640.1 61.111 72 25 1 116 187 5 73 1.54e-24 103
Msa0872080 AT2G28810.2 65.574 61 21 0 126 186 68 128 1.58e-24 104
Msa0872080 AT3G45610.1 56.944 72 30 1 131 201 36 107 1.62e-24 102
Msa0872080 AT3G61850.2 63.492 63 23 0 130 192 57 119 2.34e-24 103
Msa0872080 AT3G61850.3 63.492 63 23 0 130 192 57 119 2.34e-24 103
Msa0872080 AT2G28810.1 65.574 61 21 0 126 186 85 145 2.44e-24 104
Msa0872080 AT3G61850.1 63.492 63 23 0 130 192 69 131 2.79e-24 103
Msa0872080 AT3G50410.1 73.585 53 14 0 135 187 30 82 3.13e-24 102
Msa0872080 AT1G07640.2 75.472 53 13 0 135 187 77 129 3.63e-24 103
Msa0872080 AT3G61850.5 63.492 63 23 0 130 192 57 119 3.91e-24 103
Msa0872080 AT3G61850.4 63.492 63 23 0 130 192 69 131 4.09e-24 103
Msa0872080 AT5G65590.1 73.214 56 15 0 135 190 41 96 4.14e-24 103
Msa0872080 AT2G37590.1 67.241 58 19 0 131 188 85 142 4.21e-24 103
Msa0872080 AT1G07640.3 75.472 53 13 0 135 187 85 137 4.52e-24 103
Msa0872080 AT4G38000.1 52.874 87 39 2 134 219 40 125 5.14e-24 101
Msa0872080 AT4G24060.1 68.421 57 18 0 132 188 50 106 7.07e-24 102
Msa0872080 AT1G64620.1 71.154 52 15 0 132 183 46 97 4.10e-23 100
Msa0872080 AT1G28310.1 72.222 54 15 0 135 188 27 80 4.44e-23 100
Msa0872080 AT5G02460.1 67.241 58 19 0 131 188 91 148 5.85e-23 101
Msa0872080 AT1G28310.2 72.222 54 15 0 135 188 51 104 7.17e-23 99.8
Msa0872080 AT2G28510.1 69.643 56 17 0 137 192 50 105 7.41e-23 99.0
Msa0872080 AT5G66940.1 67.925 53 17 0 135 187 32 84 2.17e-22 95.9
Msa0872080 AT4G00940.1 66.102 59 20 0 130 188 63 121 3.13e-22 97.4
Msa0872080 AT4G00940.3 66.102 59 20 0 130 188 63 121 3.13e-22 97.4
Msa0872080 AT4G00940.2 66.102 59 20 0 130 188 63 121 3.13e-22 97.4
Msa0872080 AT1G47655.1 73.469 49 13 0 135 183 29 77 3.76e-22 94.7
Msa0872080 AT2G46590.1 67.925 53 17 0 130 182 63 115 6.97e-22 97.4
Msa0872080 AT2G46590.2 67.925 53 17 0 130 182 75 127 7.63e-22 97.4
Msa0872080 AT3G52440.1 69.231 52 16 0 137 188 27 78 7.95e-22 95.1
Msa0872080 AT3G52440.2 69.231 52 16 0 137 188 46 97 1.04e-21 95.1
Msa0872080 AT1G21340.1 66.667 54 18 0 137 190 40 93 1.40e-21 94.7
Msa0872080 AT4G21050.1 57.353 68 29 0 121 188 10 77 4.79e-21 91.7
Msa0872080 AT5G62940.1 69.388 49 15 0 137 185 75 123 7.81e-20 91.7
Msa0872080 AT4G21040.1 49.412 85 36 2 137 221 27 104 9.76e-19 85.9
Msa0872080 AT4G21080.1 53.333 75 31 2 137 208 27 100 5.72e-18 84.0
Msa0872080 AT4G21030.1 56.818 44 19 0 137 180 23 66 7.44e-11 62.0

Find 162 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCTGCATTCGCTTTA+AGG 0.108754 6_1:+7398523 Msa0872080:three_prime_UTR
TCTATCCTCCACCGGCTTAT+TGG 0.171714 6_1:+7397813 Msa0872080:CDS
CTATCCTCCACCGGCTTATT+GGG 0.204943 6_1:+7397814 Msa0872080:CDS
ATTGAAAACTTCAAAGATTA+TGG 0.206877 6_1:+7397091 Msa0872080:CDS
CCATTAATGATTTGAGAAAA+TGG 0.248653 6_1:+7398355 Msa0872080:three_prime_UTR
GGTGGGAAGCTTTGACAATT+TGG 0.253300 6_1:-7397677 None:intergenic
CTGTTTCGGGTACAGTTATT+TGG 0.254197 6_1:-7397349 None:intergenic
CATGGTAGCTTTCATGTTAC+AGG 0.256387 6_1:+7398890 Msa0872080:three_prime_UTR
GTTATTGTAGTAGCAGAATT+TGG 0.264718 6_1:-7397198 None:intergenic
GAGTTAATGGCTGCACTATT+TGG 0.273329 6_1:-7397890 None:intergenic
GCAAGAAATGCCAGAGATAC+TGG 0.298374 6_1:+7397249 Msa0872080:CDS
GCAGAGTAGTTTCACCTCTT+AGG 0.306697 6_1:+7398565 Msa0872080:three_prime_UTR
CGAGTTAGGACCGGAGTTAA+TGG 0.309987 6_1:-7397903 None:intergenic
ATCGAGTCTGCCTTATTGTT+TGG 0.312583 6_1:-7398097 None:intergenic
AGAATTCTGAACAGCTGTTT+CGG 0.322405 6_1:-7397363 None:intergenic
GAATTCTGAACAGCTGTTTC+GGG 0.323421 6_1:-7397362 None:intergenic
GCTGGATTGGCCTGCATGGC+AGG 0.325373 6_1:-7398187 None:intergenic
TTACCTAAGGTTGGCGAGTT+AGG 0.325633 6_1:-7397917 None:intergenic
TTCATAGCTGTTGCGTCAAT+TGG 0.347659 6_1:-7398298 None:intergenic
GGTGTCCATGCTATTACAAC+GGG 0.366283 6_1:-7397177 None:intergenic
TGCTGCTGGATTGGCCTGCA+TGG 0.384791 6_1:-7398191 None:intergenic
GCATTGAACCTTGCTGATAA+AGG 0.387819 6_1:+7397488 Msa0872080:CDS
GGAGCACCAGCTTCATCTTC+TGG 0.388137 6_1:+7395543 Msa0872080:CDS
ATATACATCAACGATCTTGC+TGG 0.391847 6_1:-7398699 None:intergenic
CCTAGACATTGCTGCTGGAT+TGG 0.394113 6_1:-7398200 None:intergenic
ACATGAATCCGTAGACCTTC+CGG 0.402858 6_1:-7397545 None:intergenic
TGATGTGTCCGAAGATTTGA+TGG 0.404612 6_1:-7397603 None:intergenic
ATGGCACAGTCTTTACATTC+AGG 0.405324 6_1:+7397432 Msa0872080:CDS
TCTCGGGATTCCAAACAATA+AGG 0.410029 6_1:+7398087 Msa0872080:CDS
ATTGGATGCAAACGTGACTT+TGG 0.413283 6_1:+7398856 Msa0872080:three_prime_UTR
CAACCTTAGGTAAGCATTCA+AGG 0.416860 6_1:+7397927 Msa0872080:CDS
AACATTGAGGATTGATGACT+TGG 0.417618 6_1:+7398033 Msa0872080:CDS
AGCTCTATATTGACAACTCT+CGG 0.418682 6_1:+7398070 Msa0872080:CDS
CCCCGGCAGTCCAGTATCTC+TGG 0.422379 6_1:-7397259 None:intergenic
TTCCCTTGAATGCTTACCTA+AGG 0.425560 6_1:-7397930 None:intergenic
GGCAAAAGCCAAGGGGCACC+AGG 0.430656 6_1:-7397716 None:intergenic
TTCTCTCTCTTCTTCATCCA+TGG 0.431823 6_1:-7395607 None:intergenic
AGTTAGTTCTTGTTGATCAA+TGG 0.444575 6_1:+7398482 Msa0872080:three_prime_UTR
AGACACAAACTCAAGATTAG+TGG 0.448603 6_1:+7397028 Msa0872080:CDS
ATAAAGAAGAAAAGTCCCTT+TGG 0.450455 6_1:+7398002 Msa0872080:CDS
AAGAAAGCAATCTAAAAGAA+AGG 0.452021 6_1:-7398618 None:intergenic
CCTTGCCGCCGCCACCTAAG+AGG 0.455766 6_1:-7398579 None:intergenic
GCAAAACTCACCTGCCATGC+AGG 0.456838 6_1:+7398177 Msa0872080:CDS
TGGGAAGACAATTCCGGTAC+CGG 0.459321 6_1:+7395491 Msa0872080:CDS
TCCGGTAGAGTCACCGGATC+CGG 0.459421 6_1:-7395523 None:intergenic
GCCAGAGATACTGGACTGCC+GGG 0.460238 6_1:+7397258 Msa0872080:CDS
CCGGAGATCTCTGCCGGATC+CGG 0.461337 6_1:+7395510 Msa0872080:CDS
AATGGAAGAAATTGAGAAGA+TGG 0.461846 6_1:+7398500 Msa0872080:three_prime_UTR
CTCAAACCAACCGACTCAAC+AGG 0.464405 6_1:+7397962 Msa0872080:CDS
TGCCATGGAATCCATCTCAA+TGG 0.464497 6_1:+7397735 Msa0872080:CDS
TAAAGAAGAAAAGTCCCTTT+GGG 0.467980 6_1:+7398003 Msa0872080:CDS
CGGCGTCCTAAAATCACATC+AGG 0.473709 6_1:-7398932 None:intergenic
CCATGGATTGTTCCACGCAC+CGG 0.474496 6_1:-7397849 None:intergenic
GGTCCTAACTCGCCAACCTT+AGG 0.475475 6_1:+7397914 Msa0872080:CDS
TCAGAACCTGTTGAGTCGGT+TGG 0.477638 6_1:-7397968 None:intergenic
TGCCAGAGATACTGGACTGC+CGG 0.478106 6_1:+7397257 Msa0872080:CDS
TGATCATTCCATCAAATCTT+CGG 0.483222 6_1:+7397595 Msa0872080:CDS
CTTGAATGCTTACCTAAGGT+TGG 0.484913 6_1:-7397926 None:intergenic
CACATTTCTCATGGCTCCCC+CGG 0.486523 6_1:-7397276 None:intergenic
GAAGGATGATGGACTCCGTT+TGG 0.487346 6_1:-7397398 None:intergenic
AACTTGTTCAAGAGAACTGC+TGG 0.493603 6_1:-7397651 None:intergenic
TTCCTACGACCGGCACCTAC+AGG 0.494832 6_1:-7397299 None:intergenic
TGGATAACTATGCATGTGTT+TGG 0.495117 6_1:+7398822 Msa0872080:three_prime_UTR
AGAAAGCAATCTAAAAGAAA+GGG 0.498330 6_1:-7398617 None:intergenic
CTTCTGTCTGGCGCATGTCT+CGG 0.500469 6_1:+7398998 Msa0872080:three_prime_UTR
TTTGTGTGCAACCTTCTGTC+TGG 0.502089 6_1:+7398986 Msa0872080:three_prime_UTR
TACAGTTCAGTGAAGGATGA+TGG 0.503313 6_1:-7397409 None:intergenic
CTCCATTGAGATGGATTCCA+TGG 0.506520 6_1:-7397737 None:intergenic
TTCGTCAGAACCTGTTGAGT+CGG 0.506659 6_1:-7397972 None:intergenic
TCAAAACCATGGTTCTTCCA+TGG 0.507388 6_1:+7395590 Msa0872080:CDS
GCCGGATCCGGTGACTCTAC+CGG 0.509037 6_1:+7395522 Msa0872080:CDS
TCTCAATCCGACTCGCCAAA+CGG 0.513729 6_1:+7397383 Msa0872080:CDS
TCTGGTGATGCTGTTGATGA+TGG 0.515932 6_1:+7395561 Msa0872080:CDS
CATGGATTGTTCCACGCACC+GGG 0.516259 6_1:-7397848 None:intergenic
TTATAAGCTACATAATTATG+AGG 0.516746 6_1:-7398242 None:intergenic
CCTCTTAGGTGGCGGCGGCA+AGG 0.519889 6_1:+7398579 Msa0872080:three_prime_UTR
ATGGACTCCGTTTGGCGAGT+CGG 0.520233 6_1:-7397390 None:intergenic
TCATTAGACCGGAAGGTCTA+CGG 0.522416 6_1:+7397537 Msa0872080:CDS
CCAATCCAGCAGCAATGTCT+AGG 0.524624 6_1:+7398200 Msa0872080:CDS
TCTCACCCAATCATCAGAAA+AGG 0.525594 6_1:+7396995 Msa0872080:CDS
CATCCTTCACTGAACTGTAA+TGG 0.526917 6_1:+7397413 Msa0872080:CDS
CCGGCAGAGATCTCCGGTAC+CGG 0.531399 6_1:-7395504 None:intergenic
ATTGACCTAGACATTGCTGC+TGG 0.532105 6_1:-7398205 None:intergenic
AGAAGATGAAGCTGGTGCTC+CGG 0.532773 6_1:-7395541 None:intergenic
ACTTGAGAGCTCCATTGAGA+TGG 0.535364 6_1:-7397746 None:intergenic
GTGGCATGGCAAATCCTTGT+GGG 0.536245 6_1:-7397790 None:intergenic
TGGTGCTCCGGTAGAGTCAC+CGG 0.536837 6_1:-7395529 None:intergenic
GCTCTATATTGACAACTCTC+GGG 0.539504 6_1:+7398071 Msa0872080:CDS
TGCGTGGAACAATCCATGGC+TGG 0.539604 6_1:+7397853 Msa0872080:CDS
CAAGGGGCACCAGGGTAGTA+CGG 0.543849 6_1:-7397707 None:intergenic
TTTCACCTCTTAGGTGGCGG+CGG 0.545372 6_1:+7398574 Msa0872080:three_prime_UTR
GGATTCCATGGCAAAAGCCA+AGG 0.546404 6_1:-7397725 None:intergenic
TAGTTTCACCTCTTAGGTGG+CGG 0.547587 6_1:+7398571 Msa0872080:three_prime_UTR
CGAGACATGCGCCAGACAGA+AGG 0.550848 6_1:-7398997 None:intergenic
TTTGGGTTCCGAAAACATTG+AGG 0.554840 6_1:+7398020 Msa0872080:CDS
TGAATCGACCAAATGTAAGA+AGG 0.555366 6_1:+7396959 Msa0872080:CDS
TTCGGCGTCCATGTTCAAGT+CGG 0.556549 6_1:-7398952 None:intergenic
TATTAACTCCTTTATCAGCA+AGG 0.557069 6_1:-7397496 None:intergenic
TATCCTCCACCGGCTTATTG+GGG 0.557577 6_1:+7397815 Msa0872080:CDS
TTAGGACGCCGACTTGAACA+TGG 0.559285 6_1:+7398944 Msa0872080:three_prime_UTR
ATTCTTGTTCTTCCTACGAC+CGG 0.559859 6_1:-7397309 None:intergenic
CTTCATCCATGGAAGAACCA+TGG 0.559893 6_1:-7395596 None:intergenic
ATGCTAAAACCCCAATAAGC+CGG 0.561380 6_1:-7397824 None:intergenic
TGGTGTCCATGCTATTACAA+CGG 0.562401 6_1:-7397178 None:intergenic
ATCATGGAAGCAAAAGACCC+TGG 0.564274 6_1:+7395456 Msa0872080:exon
GCTGCACTATTTGGTGATGA+AGG 0.566444 6_1:-7397881 None:intergenic
TGCCTGTAGGTGCCGGTCGT+AGG 0.569339 6_1:+7397297 Msa0872080:CDS
TTTGCTCGTCCTCAGTGGAG+GGG 0.569766 6_1:-7397064 None:intergenic
AATAAGGCAGACTCGATTCG+TGG 0.569939 6_1:+7398103 Msa0872080:CDS
ACTTTGGACAAGCAGCTACA+TGG 0.570481 6_1:+7398872 Msa0872080:three_prime_UTR
CGGATTCATGTACCCTATGT+TGG 0.570976 6_1:+7397557 Msa0872080:CDS
ATAAGGCAGACTCGATTCGT+GGG 0.572613 6_1:+7398104 Msa0872080:CDS
GTGTCCCCGTTGTAATAGCA+TGG 0.578322 6_1:+7397172 Msa0872080:CDS
AAACCCCAATAAGCCGGTGG+AGG 0.580141 6_1:-7397818 None:intergenic
ACCTACAGGCACATTTCTCA+TGG 0.581950 6_1:-7397285 None:intergenic
GGGTAGTACGGAACTTGCGG+TGG 0.584630 6_1:-7397695 None:intergenic
AACGGAATCATTAGACCGGA+AGG 0.586342 6_1:+7397530 Msa0872080:CDS
GATTGATGACTTGGGAGAAG+CGG 0.590837 6_1:+7398042 Msa0872080:CDS
TAAGGTTGGCGAGTTAGGAC+CGG 0.591433 6_1:-7397912 None:intergenic
CCGCAAGTTCCGTACTACCC+TGG 0.592010 6_1:+7397698 Msa0872080:CDS
AATCTCCTTAAAGCGAATGC+AGG 0.592618 6_1:-7398528 None:intergenic
ATTTGAGAAAATGGACGTGT+TGG 0.594009 6_1:+7398364 Msa0872080:three_prime_UTR
CCGGTGCGTGGAACAATCCA+TGG 0.594068 6_1:+7397849 Msa0872080:CDS
AGAAATGTGCCTGTAGGTGC+CGG 0.595484 6_1:+7397290 Msa0872080:CDS
GAGTAGTTTCACCTCTTAGG+TGG 0.599213 6_1:+7398568 Msa0872080:three_prime_UTR
GCATCACCAGAAGATGAAGC+TGG 0.603079 6_1:-7395549 None:intergenic
TCATGGAAGCAAAAGACCCT+GGG 0.603420 6_1:+7395457 Msa0872080:exon
CCAGGGTAGTACGGAACTTG+CGG 0.603954 6_1:-7397698 None:intergenic
TACAAACTGTAAGAATACAT+TGG 0.604770 6_1:+7398438 Msa0872080:three_prime_UTR
GATTCCATGGCAAAAGCCAA+GGG 0.605584 6_1:-7397724 None:intergenic
TCATTTAGGTGCAATAAACA+TGG 0.605778 6_1:+7398783 Msa0872080:three_prime_UTR
GATGAAGGTTGTGCCAGCCA+TGG 0.606784 6_1:-7397866 None:intergenic
AACCTTAGGTAAGCATTCAA+GGG 0.609767 6_1:+7397928 Msa0872080:CDS
TGTTTGGTAGTGCATTACAT+TGG 0.610643 6_1:+7398838 Msa0872080:three_prime_UTR
CCAGAGATACTGGACTGCCG+GGG 0.615553 6_1:+7397259 Msa0872080:CDS
ATGCTATTACAACGGGGACA+CGG 0.617301 6_1:-7397170 None:intergenic
TAAGCTTATGTGACATAGTG+AGG 0.620731 6_1:+7398659 Msa0872080:three_prime_UTR
AGAAGAGAGAGAAATTGATG+AGG 0.620945 6_1:+7395617 Msa0872080:CDS
CATGCCACTCTATCCTCCAC+CGG 0.623143 6_1:+7397805 Msa0872080:CDS
TTCTTGAATTCAGGACACAA+TGG 0.623157 6_1:+7396932 Msa0872080:intron
TAAGCCGGTGGAGGATAGAG+TGG 0.624963 6_1:-7397809 None:intergenic
CAGAGATACTGGACTGCCGG+GGG 0.627532 6_1:+7397260 Msa0872080:CDS
AGTGGCATGGCAAATCCTTG+TGG 0.633181 6_1:-7397791 None:intergenic
AGATTGCATTGATTCACACA+AGG 0.639343 6_1:-7397465 None:intergenic
GACTCAACAGGTTCTGACGA+AGG 0.640024 6_1:+7397974 Msa0872080:CDS
AATAGTGCAGCCATTAACTC+CGG 0.645760 6_1:+7397893 Msa0872080:CDS
AGTGACACGTTATGTTTGTG+TGG 0.649491 6_1:-7395321 None:intergenic
TAAGGCAGACTCGATTCGTG+GGG 0.654612 6_1:+7398105 Msa0872080:CDS
GATGGTATCATTCAAAACCA+TGG 0.655530 6_1:+7395579 Msa0872080:CDS
GCAAAAGCCAAGGGGCACCA+GGG 0.656849 6_1:-7397715 None:intergenic
CGGTGGAGGATAGAGTGGCA+TGG 0.658087 6_1:-7397804 None:intergenic
GTGCCATTACAGTTCAGTGA+AGG 0.658325 6_1:-7397416 None:intergenic
ACATTGAGGATTGATGACTT+GGG 0.660611 6_1:+7398034 Msa0872080:CDS
GATTGCATTGATTCACACAA+GGG 0.666221 6_1:-7397464 None:intergenic
ATCAATTAACCCCTCCACTG+AGG 0.675714 6_1:+7397055 Msa0872080:CDS
GGTAGTACGGAACTTGCGGT+GGG 0.677836 6_1:-7397694 None:intergenic
CTAAAACCCCAATAAGCCGG+TGG 0.682119 6_1:-7397821 None:intergenic
GACGCAACAGCTATGAAACA+TGG 0.687461 6_1:+7398304 Msa0872080:three_prime_UTR
GCCATGAGAAATGTGCCTGT+AGG 0.725661 6_1:+7397284 Msa0872080:CDS
AAGGCAGACTCGATTCGTGG+GGG 0.727471 6_1:+7398106 Msa0872080:CDS
ATTCCATGGCAAAAGCCAAG+GGG 0.742778 6_1:-7397723 None:intergenic
GTGTCCATGCTATTACAACG+GGG 0.773351 6_1:-7397176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATGATGAAAAAAG+TGG - chr6_1:7395376-7395395 None:intergenic 15.0%
!! ATAAAGAAAAAACAGATTTA+AGG + chr6_1:7396459-7396478 Msa0872080:intron 15.0%
!! AAAAAGAAACAGAAAAATCA+TGG + chr6_1:7395440-7395459 Msa0872080:exon 20.0%
!!! ATTTTCACATTTGAAATCAA+GGG - chr6_1:7395672-7395691 None:intergenic 20.0%
!!! TATTTTCACATTTGAAATCA+AGG - chr6_1:7395673-7395692 None:intergenic 20.0%
!! TCAAATGTGAAAATATTTAG+TGG + chr6_1:7395678-7395697 Msa0872080:intron 20.0%
!! CAAATGTGAAAATATTTAGT+GGG + chr6_1:7395679-7395698 Msa0872080:intron 20.0%
!! AAACAAAAAACACACATAAA+AGG - chr6_1:7395761-7395780 None:intergenic 20.0%
!!! TTCAATTTTGGAATTGATTT+TGG + chr6_1:7395845-7395864 Msa0872080:intron 20.0%
!!! GATCATAGTTTTTTTTTGTT+TGG + chr6_1:7396015-7396034 Msa0872080:intron 20.0%
!! ATTGAAAACTTCAAAGATTA+TGG + chr6_1:7397091-7397110 Msa0872080:CDS 20.0%
!! TTATAAGCTACATAATTATG+AGG - chr6_1:7398245-7398264 None:intergenic 20.0%
!!! GTTTCAGAATTTTATCATTT+AGG + chr6_1:7398769-7398788 Msa0872080:three_prime_UTR 20.0%
!!! ATGGAAGTATTTTATCATTT+TGG + chr6_1:7398802-7398821 Msa0872080:three_prime_UTR 20.0%
!!! TGTGTTTTTTGTTTGTTGAA+GGG + chr6_1:7395767-7395786 Msa0872080:intron 25.0%
!!! GTTTGGATTTTGTGTTTTTT+TGG + chr6_1:7395801-7395820 Msa0872080:intron 25.0%
!!! TTTTTTGGATCTATGTTGTT+TGG + chr6_1:7395816-7395835 Msa0872080:intron 25.0%
!!! GTTTGGTTTTGTTTCAATTT+TGG + chr6_1:7395833-7395852 Msa0872080:intron 25.0%
!!! GGAATTGATTTTGGTTTTTA+AGG + chr6_1:7395854-7395873 Msa0872080:intron 25.0%
! GCTTAAGCTTAACATTAAAT+TGG + chr6_1:7395926-7395945 Msa0872080:intron 25.0%
! CTAGAACTAAATCAAAACTA+AGG - chr6_1:7396046-7396065 None:intergenic 25.0%
! TCATAATAACGAATCTAAGA+TGG - chr6_1:7396104-7396123 None:intergenic 25.0%
!!! ATCTGATTCAAAGTTTTAAC+CGG + chr6_1:7396191-7396210 Msa0872080:intron 25.0%
! TTCAGAATCAGATATAGAAA+AGG - chr6_1:7396367-7396386 None:intergenic 25.0%
!!! ATCTTTCTCTATTTAGCTTT+TGG + chr6_1:7396413-7396432 Msa0872080:intron 25.0%
!!! TCTTTCTCTATTTAGCTTTT+GGG + chr6_1:7396414-7396433 Msa0872080:intron 25.0%
! AAAAACAGATTTAAGGAGTA+AGG + chr6_1:7396466-7396485 Msa0872080:intron 25.0%
! CATAAATACTTGAGACTATT+CGG + chr6_1:7396726-7396745 Msa0872080:intron 25.0%
!! TCAAGATTTTTCTTGAATTC+AGG + chr6_1:7396923-7396942 Msa0872080:intron 25.0%
!! ATCTTTTTCCTTCTTACATT+TGG - chr6_1:7396970-7396989 None:intergenic 25.0%
!!! TTTCAAAGCATTTTCTTCAA+AGG + chr6_1:7398135-7398154 Msa0872080:CDS 25.0%
!!! TTCAAAGCATTTTCTTCAAA+GGG + chr6_1:7398136-7398155 Msa0872080:CDS 25.0%
!! CCATTTTCTCAAATCATTAA+TGG - chr6_1:7398358-7398377 None:intergenic 25.0%
! CCATTAATGATTTGAGAAAA+TGG + chr6_1:7398355-7398374 Msa0872080:three_prime_UTR 25.0%
! TACAAACTGTAAGAATACAT+TGG + chr6_1:7398438-7398457 Msa0872080:three_prime_UTR 25.0%
!!! CATTGGTTCATTTTTGTTTT+TGG + chr6_1:7398455-7398474 Msa0872080:three_prime_UTR 25.0%
! AGAAAGCAATCTAAAAGAAA+GGG - chr6_1:7398620-7398639 None:intergenic 25.0%
! AAGAAAGCAATCTAAAAGAA+AGG - chr6_1:7398621-7398640 None:intergenic 25.0%
!!! ACACAAATGATTGTTTTGTT+CGG - chr6_1:7398973-7398992 None:intergenic 25.0%
! TGTGAAAATATTTAGTGGGT+TGG + chr6_1:7395683-7395702 Msa0872080:intron 30.0%
!!! GTGTGTTTTTTGTTTGTTGA+AGG + chr6_1:7395766-7395785 Msa0872080:intron 30.0%
GAAGGGTTTAGTATTTAGTT+TGG + chr6_1:7395784-7395803 Msa0872080:intron 30.0%
ACGATATCTATACTGAAACT+TGG - chr6_1:7396139-7396158 None:intergenic 30.0%
!! GTCAAACAAAGTTGATGTAT+TGG - chr6_1:7396246-7396265 None:intergenic 30.0%
ATAAACTCTATTTACTCCTC+TGG - chr6_1:7396268-7396287 None:intergenic 30.0%
GTTAAACACAATCAATACTC+TGG - chr6_1:7396321-7396340 None:intergenic 30.0%
!!! TTTTGTCATACTTTCTGGTT+TGG + chr6_1:7396515-7396534 Msa0872080:intron 30.0%
! TGACTATAGACAAAAGTACA+AGG - chr6_1:7396551-7396570 None:intergenic 30.0%
!!! TATTTTGTCTGGCTTTTTCA+GGG - chr6_1:7397147-7397166 None:intergenic 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr6_1:7397201-7397220 None:intergenic 30.0%
TATTAACTCCTTTATCAGCA+AGG - chr6_1:7397499-7397518 None:intergenic 30.0%
GTTAATATTTCCGCGAAAAA+CGG + chr6_1:7397512-7397531 Msa0872080:CDS 30.0%
TGATCATTCCATCAAATCTT+CGG + chr6_1:7397595-7397614 Msa0872080:CDS 30.0%
ATAAAGAAGAAAAGTCCCTT+TGG + chr6_1:7398002-7398021 Msa0872080:CDS 30.0%
TAAAGAAGAAAAGTCCCTTT+GGG + chr6_1:7398003-7398022 Msa0872080:CDS 30.0%
! TCATCAATCCTCAATGTTTT+CGG - chr6_1:7398031-7398050 None:intergenic 30.0%
! AGTTAGTTCTTGTTGATCAA+TGG + chr6_1:7398482-7398501 Msa0872080:three_prime_UTR 30.0%
AATGGAAGAAATTGAGAAGA+TGG + chr6_1:7398500-7398519 Msa0872080:three_prime_UTR 30.0%
TCATTTAGGTGCAATAAACA+TGG + chr6_1:7398783-7398802 Msa0872080:three_prime_UTR 30.0%
GATGGTATCATTCAAAACCA+TGG + chr6_1:7395579-7395598 Msa0872080:CDS 35.0%
AGAAGAGAGAGAAATTGATG+AGG + chr6_1:7395617-7395636 Msa0872080:CDS 35.0%
!!! AGCTTTTGGGTTTTGTATGT+TGG + chr6_1:7396427-7396446 Msa0872080:intron 35.0%
! GCTCATTTTGTCATACTTTC+TGG + chr6_1:7396510-7396529 Msa0872080:intron 35.0%
TTGTCTATAGTCAGCTAACA+TGG + chr6_1:7396558-7396577 Msa0872080:intron 35.0%
!! GCTATAGTACTGATTATCTG+TGG + chr6_1:7396587-7396606 Msa0872080:intron 35.0%
AATTAGCGCTTAATGCGTAA+AGG - chr6_1:7396861-7396880 None:intergenic 35.0%
TTCTTGAATTCAGGACACAA+TGG + chr6_1:7396932-7396951 Msa0872080:intron 35.0%
TGAATCGACCAAATGTAAGA+AGG + chr6_1:7396959-7396978 Msa0872080:CDS 35.0%
! AGTGACCTTTTCTGATGATT+GGG - chr6_1:7397003-7397022 None:intergenic 35.0%
AGACACAAACTCAAGATTAG+TGG + chr6_1:7397028-7397047 Msa0872080:CDS 35.0%
!!! GTATTTTGTCTGGCTTTTTC+AGG - chr6_1:7397148-7397167 None:intergenic 35.0%
TCTGGCATTTCTTGCAAAAA+TGG - chr6_1:7397244-7397263 None:intergenic 35.0%
AGAATTCTGAACAGCTGTTT+CGG - chr6_1:7397366-7397385 None:intergenic 35.0%
!! GATTGCATTGATTCACACAA+GGG - chr6_1:7397467-7397486 None:intergenic 35.0%
!! AGATTGCATTGATTCACACA+AGG - chr6_1:7397468-7397487 None:intergenic 35.0%
!! TCTAATGATTCCGTTTTTCG+CGG - chr6_1:7397525-7397544 None:intergenic 35.0%
GAAAAACGGAATCATTAGAC+CGG + chr6_1:7397526-7397545 Msa0872080:CDS 35.0%
! CTCTTTTCTTCACCAACATA+GGG - chr6_1:7397572-7397591 None:intergenic 35.0%
! ACTCTTTTCTTCACCAACAT+AGG - chr6_1:7397573-7397592 None:intergenic 35.0%
AACCTTAGGTAAGCATTCAA+GGG + chr6_1:7397928-7397947 Msa0872080:CDS 35.0%
! AACATTGAGGATTGATGACT+TGG + chr6_1:7398033-7398052 Msa0872080:CDS 35.0%
! ACATTGAGGATTGATGACTT+GGG + chr6_1:7398034-7398053 Msa0872080:CDS 35.0%
AGCTCTATATTGACAACTCT+CGG + chr6_1:7398070-7398089 Msa0872080:CDS 35.0%
ATTTGAGAAAATGGACGTGT+TGG + chr6_1:7398364-7398383 Msa0872080:three_prime_UTR 35.0%
TAAGCTTATGTGACATAGTG+AGG + chr6_1:7398659-7398678 Msa0872080:three_prime_UTR 35.0%
ATATACATCAACGATCTTGC+TGG - chr6_1:7398702-7398721 None:intergenic 35.0%
TGGATAACTATGCATGTGTT+TGG + chr6_1:7398822-7398841 Msa0872080:three_prime_UTR 35.0%
!! TGTTTGGTAGTGCATTACAT+TGG + chr6_1:7398838-7398857 Msa0872080:three_prime_UTR 35.0%
! AAACTGCCTGATGTGATTTT+AGG + chr6_1:7398926-7398945 Msa0872080:three_prime_UTR 35.0%
!! GCTTTTTGGGAAGACAATTC+CGG + chr6_1:7395485-7395504 Msa0872080:CDS 40.0%
TCAAAACCATGGTTCTTCCA+TGG + chr6_1:7395590-7395609 Msa0872080:CDS 40.0%
TTCTCTCTCTTCTTCATCCA+TGG - chr6_1:7395610-7395629 None:intergenic 40.0%
!!! AGTGGGTTGGTGTTAGATTT+TGG + chr6_1:7395696-7395715 Msa0872080:intron 40.0%
TGATGCTGTGTAGTTTCTGA+TGG + chr6_1:7395904-7395923 Msa0872080:intron 40.0%
! CATCAACTTTGTTTGACCAG+AGG + chr6_1:7396249-7396268 Msa0872080:intron 40.0%
TCTCACCCAATCATCAGAAA+AGG + chr6_1:7396995-7397014 Msa0872080:CDS 40.0%
! CAGTGACCTTTTCTGATGAT+TGG - chr6_1:7397004-7397023 None:intergenic 40.0%
TGGTGTCCATGCTATTACAA+CGG - chr6_1:7397181-7397200 None:intergenic 40.0%
CATTTCTTGCAAAAATGGCG+AGG - chr6_1:7397239-7397258 None:intergenic 40.0%
ATTCTTGTTCTTCCTACGAC+CGG - chr6_1:7397312-7397331 None:intergenic 40.0%
! CTGTTTCGGGTACAGTTATT+TGG - chr6_1:7397352-7397371 None:intergenic 40.0%
! GAATTCTGAACAGCTGTTTC+GGG - chr6_1:7397365-7397384 None:intergenic 40.0%
TACAGTTCAGTGAAGGATGA+TGG - chr6_1:7397412-7397431 None:intergenic 40.0%
CATCCTTCACTGAACTGTAA+TGG + chr6_1:7397413-7397432 Msa0872080:CDS 40.0%
ATGGCACAGTCTTTACATTC+AGG + chr6_1:7397432-7397451 Msa0872080:CDS 40.0%
GCATTGAACCTTGCTGATAA+AGG + chr6_1:7397488-7397507 Msa0872080:CDS 40.0%
TGATGTGTCCGAAGATTTGA+TGG - chr6_1:7397606-7397625 None:intergenic 40.0%
! AACTTGTTCAAGAGAACTGC+TGG - chr6_1:7397654-7397673 None:intergenic 40.0%
AATCCTTGTGGGAAAAAAGC+AGG - chr6_1:7397782-7397801 None:intergenic 40.0%
ATGCTAAAACCCCAATAAGC+CGG - chr6_1:7397827-7397846 None:intergenic 40.0%
GAGTTAATGGCTGCACTATT+TGG - chr6_1:7397893-7397912 None:intergenic 40.0%
AATAGTGCAGCCATTAACTC+CGG + chr6_1:7397893-7397912 Msa0872080:CDS 40.0%
CTTGAATGCTTACCTAAGGT+TGG - chr6_1:7397929-7397948 None:intergenic 40.0%
CAACCTTAGGTAAGCATTCA+AGG + chr6_1:7397927-7397946 Msa0872080:CDS 40.0%
TTCCCTTGAATGCTTACCTA+AGG - chr6_1:7397933-7397952 None:intergenic 40.0%
! CAATGTTTTCGGAACCCAAA+GGG - chr6_1:7398020-7398039 None:intergenic 40.0%
! TCAATGTTTTCGGAACCCAA+AGG - chr6_1:7398021-7398040 None:intergenic 40.0%
! TTTGGGTTCCGAAAACATTG+AGG + chr6_1:7398020-7398039 Msa0872080:CDS 40.0%
GCTCTATATTGACAACTCTC+GGG + chr6_1:7398071-7398090 Msa0872080:CDS 40.0%
TCTCGGGATTCCAAACAATA+AGG + chr6_1:7398087-7398106 Msa0872080:CDS 40.0%
! ATCGAGTCTGCCTTATTGTT+TGG - chr6_1:7398100-7398119 None:intergenic 40.0%
TTCATAGCTGTTGCGTCAAT+TGG - chr6_1:7398301-7398320 None:intergenic 40.0%
TTCTTCCTGCATTCGCTTTA+AGG + chr6_1:7398523-7398542 Msa0872080:three_prime_UTR 40.0%
AATCTCCTTAAAGCGAATGC+AGG - chr6_1:7398531-7398550 None:intergenic 40.0%
ATTGGATGCAAACGTGACTT+TGG + chr6_1:7398856-7398875 Msa0872080:three_prime_UTR 40.0%
CATGGTAGCTTTCATGTTAC+AGG + chr6_1:7398890-7398909 Msa0872080:three_prime_UTR 40.0%
ATCATGGAAGCAAAAGACCC+TGG + chr6_1:7395456-7395475 Msa0872080:exon 45.0%
TCATGGAAGCAAAAGACCCT+GGG + chr6_1:7395457-7395476 Msa0872080:exon 45.0%
! ACCCTGGGATCAAGCTTTTT+GGG + chr6_1:7395472-7395491 Msa0872080:CDS 45.0%
TCCCAAAAAGCTTGATCCCA+GGG - chr6_1:7395476-7395495 None:intergenic 45.0%
TTCCCAAAAAGCTTGATCCC+AGG - chr6_1:7395477-7395496 None:intergenic 45.0%
! TCTGGTGATGCTGTTGATGA+TGG + chr6_1:7395561-7395580 Msa0872080:CDS 45.0%
CTTCATCCATGGAAGAACCA+TGG - chr6_1:7395599-7395618 None:intergenic 45.0%
ATCAATTAACCCCTCCACTG+AGG + chr6_1:7397055-7397074 Msa0872080:CDS 45.0%
! TGTATTTTGCTCGTCCTCAG+TGG - chr6_1:7397072-7397091 None:intergenic 45.0%
ATGCTATTACAACGGGGACA+CGG - chr6_1:7397173-7397192 None:intergenic 45.0%
GTGTCCATGCTATTACAACG+GGG - chr6_1:7397179-7397198 None:intergenic 45.0%
GGTGTCCATGCTATTACAAC+GGG - chr6_1:7397180-7397199 None:intergenic 45.0%
GCAAGAAATGCCAGAGATAC+TGG + chr6_1:7397249-7397268 Msa0872080:CDS 45.0%
ACCTACAGGCACATTTCTCA+TGG - chr6_1:7397288-7397307 None:intergenic 45.0%
! GTGCCATTACAGTTCAGTGA+AGG - chr6_1:7397419-7397438 None:intergenic 45.0%
AACGGAATCATTAGACCGGA+AGG + chr6_1:7397530-7397549 Msa0872080:CDS 45.0%
TCATTAGACCGGAAGGTCTA+CGG + chr6_1:7397537-7397556 Msa0872080:CDS 45.0%
ACATGAATCCGTAGACCTTC+CGG - chr6_1:7397548-7397567 None:intergenic 45.0%
CGGATTCATGTACCCTATGT+TGG + chr6_1:7397557-7397576 Msa0872080:CDS 45.0%
! GGTGGGAAGCTTTGACAATT+TGG - chr6_1:7397680-7397699 None:intergenic 45.0%
ATTCCATGGCAAAAGCCAAG+GGG - chr6_1:7397726-7397745 None:intergenic 45.0%
GATTCCATGGCAAAAGCCAA+GGG - chr6_1:7397727-7397746 None:intergenic 45.0%
TGCCATGGAATCCATCTCAA+TGG + chr6_1:7397735-7397754 Msa0872080:CDS 45.0%
! CTCCATTGAGATGGATTCCA+TGG - chr6_1:7397740-7397759 None:intergenic 45.0%
ACTTGAGAGCTCCATTGAGA+TGG - chr6_1:7397749-7397768 None:intergenic 45.0%
!! TATTGGGGTTTTAGCATGCC+CGG + chr6_1:7397830-7397849 Msa0872080:CDS 45.0%
!! GCTGCACTATTTGGTGATGA+AGG - chr6_1:7397884-7397903 None:intergenic 45.0%
TTACCTAAGGTTGGCGAGTT+AGG - chr6_1:7397920-7397939 None:intergenic 45.0%
TTCGTCAGAACCTGTTGAGT+CGG - chr6_1:7397975-7397994 None:intergenic 45.0%
! GATTGATGACTTGGGAGAAG+CGG + chr6_1:7398042-7398061 Msa0872080:CDS 45.0%
! AATAAGGCAGACTCGATTCG+TGG + chr6_1:7398103-7398122 Msa0872080:CDS 45.0%
! ATAAGGCAGACTCGATTCGT+GGG + chr6_1:7398104-7398123 Msa0872080:CDS 45.0%
ATTGACCTAGACATTGCTGC+TGG - chr6_1:7398208-7398227 None:intergenic 45.0%
GACGCAACAGCTATGAAACA+TGG + chr6_1:7398304-7398323 Msa0872080:three_prime_UTR 45.0%
GCAGAGTAGTTTCACCTCTT+AGG + chr6_1:7398565-7398584 Msa0872080:three_prime_UTR 45.0%
GAGTAGTTTCACCTCTTAGG+TGG + chr6_1:7398568-7398587 Msa0872080:three_prime_UTR 45.0%
TAGTTTCACCTCTTAGGTGG+CGG + chr6_1:7398571-7398590 Msa0872080:three_prime_UTR 45.0%
ACTTTGGACAAGCAGCTACA+TGG + chr6_1:7398872-7398891 Msa0872080:three_prime_UTR 45.0%
TTTGTGTGCAACCTTCTGTC+TGG + chr6_1:7398986-7399005 Msa0872080:three_prime_UTR 45.0%
!!! TTTTATTTTTATGTATTTTT+TGG - chr6_1:7395418-7395437 None:intergenic 5.0%
! GACCCTGGGATCAAGCTTTT+TGG + chr6_1:7395471-7395490 Msa0872080:CDS 50.0%
TGGGAAGACAATTCCGGTAC+CGG + chr6_1:7395491-7395510 Msa0872080:CDS 50.0%
AGAAGATGAAGCTGGTGCTC+CGG - chr6_1:7395544-7395563 None:intergenic 50.0%
GCATCACCAGAAGATGAAGC+TGG - chr6_1:7395552-7395571 None:intergenic 50.0%
!! TAACCGGAAGTTGATGCGTC+TGG + chr6_1:7396207-7396226 Msa0872080:intron 50.0%
GAACCAGACGCATCAACTTC+CGG - chr6_1:7396213-7396232 None:intergenic 50.0%
! TTTTGCTCGTCCTCAGTGGA+GGG - chr6_1:7397068-7397087 None:intergenic 50.0%
! ATTTTGCTCGTCCTCAGTGG+AGG - chr6_1:7397069-7397088 None:intergenic 50.0%
! GGACACGGCAGTATTTTGTC+TGG - chr6_1:7397158-7397177 None:intergenic 50.0%
GTGTCCCCGTTGTAATAGCA+TGG + chr6_1:7397172-7397191 Msa0872080:CDS 50.0%
TCTTGCAAAAATGGCGAGGC+TGG - chr6_1:7397235-7397254 None:intergenic 50.0%
GCCATGAGAAATGTGCCTGT+AGG + chr6_1:7397284-7397303 Msa0872080:CDS 50.0%
AGAAATGTGCCTGTAGGTGC+CGG + chr6_1:7397290-7397309 Msa0872080:CDS 50.0%
! TCTCAATCCGACTCGCCAAA+CGG + chr6_1:7397383-7397402 Msa0872080:CDS 50.0%
!! GAAGGATGATGGACTCCGTT+TGG - chr6_1:7397401-7397420 None:intergenic 50.0%
GGATTCCATGGCAAAAGCCA+AGG - chr6_1:7397728-7397747 None:intergenic 50.0%
TGTGGGAAAAAAGCAGGTGG+TGG - chr6_1:7397776-7397795 None:intergenic 50.0%
CCTTGTGGGAAAAAAGCAGG+TGG - chr6_1:7397779-7397798 None:intergenic 50.0%
!!! CCACCTGCTTTTTTCCCACA+AGG + chr6_1:7397776-7397795 Msa0872080:CDS 50.0%
GTGGCATGGCAAATCCTTGT+GGG - chr6_1:7397793-7397812 None:intergenic 50.0%
AGTGGCATGGCAAATCCTTG+TGG - chr6_1:7397794-7397813 None:intergenic 50.0%
!! TCTATCCTCCACCGGCTTAT+TGG + chr6_1:7397813-7397832 Msa0872080:CDS 50.0%
!! CTATCCTCCACCGGCTTATT+GGG + chr6_1:7397814-7397833 Msa0872080:CDS 50.0%
!! TATCCTCCACCGGCTTATTG+GGG + chr6_1:7397815-7397834 Msa0872080:CDS 50.0%
CTAAAACCCCAATAAGCCGG+TGG - chr6_1:7397824-7397843 None:intergenic 50.0%
CGAGTTAGGACCGGAGTTAA+TGG - chr6_1:7397906-7397925 None:intergenic 50.0%
TAAGGTTGGCGAGTTAGGAC+CGG - chr6_1:7397915-7397934 None:intergenic 50.0%
! CTCAAACCAACCGACTCAAC+AGG + chr6_1:7397962-7397981 Msa0872080:CDS 50.0%
TCAGAACCTGTTGAGTCGGT+TGG - chr6_1:7397971-7397990 None:intergenic 50.0%
! GACTCAACAGGTTCTGACGA+AGG + chr6_1:7397974-7397993 Msa0872080:CDS 50.0%
! TAAGGCAGACTCGATTCGTG+GGG + chr6_1:7398105-7398124 Msa0872080:CDS 50.0%
CCTAGACATTGCTGCTGGAT+TGG - chr6_1:7398203-7398222 None:intergenic 50.0%
CCAATCCAGCAGCAATGTCT+AGG + chr6_1:7398200-7398219 Msa0872080:CDS 50.0%
CGGCGTCCTAAAATCACATC+AGG - chr6_1:7398935-7398954 None:intergenic 50.0%
!! TTAGGACGCCGACTTGAACA+TGG + chr6_1:7398944-7398963 Msa0872080:three_prime_UTR 50.0%
TTCGGCGTCCATGTTCAAGT+CGG - chr6_1:7398955-7398974 None:intergenic 50.0%
! GGAGCACCAGCTTCATCTTC+TGG + chr6_1:7395543-7395562 Msa0872080:CDS 55.0%
TTTGCTCGTCCTCAGTGGAG+GGG - chr6_1:7397067-7397086 None:intergenic 55.0%
TGCCAGAGATACTGGACTGC+CGG + chr6_1:7397257-7397276 Msa0872080:CDS 55.0%
CACATTTCTCATGGCTCCCC+CGG - chr6_1:7397279-7397298 None:intergenic 55.0%
ATGGACTCCGTTTGGCGAGT+CGG - chr6_1:7397393-7397412 None:intergenic 55.0%
GGTAGTACGGAACTTGCGGT+GGG - chr6_1:7397697-7397716 None:intergenic 55.0%
CCAGGGTAGTACGGAACTTG+CGG - chr6_1:7397701-7397720 None:intergenic 55.0%
CATGCCACTCTATCCTCCAC+CGG + chr6_1:7397805-7397824 Msa0872080:CDS 55.0%
TAAGCCGGTGGAGGATAGAG+TGG - chr6_1:7397812-7397831 None:intergenic 55.0%
AAACCCCAATAAGCCGGTGG+AGG - chr6_1:7397821-7397840 None:intergenic 55.0%
! CATGGATTGTTCCACGCACC+GGG - chr6_1:7397851-7397870 None:intergenic 55.0%
! CCATGGATTGTTCCACGCAC+CGG - chr6_1:7397852-7397871 None:intergenic 55.0%
TGCGTGGAACAATCCATGGC+TGG + chr6_1:7397853-7397872 Msa0872080:CDS 55.0%
GATGAAGGTTGTGCCAGCCA+TGG - chr6_1:7397869-7397888 None:intergenic 55.0%
GGTCCTAACTCGCCAACCTT+AGG + chr6_1:7397914-7397933 Msa0872080:CDS 55.0%
! AAGGCAGACTCGATTCGTGG+GGG + chr6_1:7398106-7398125 Msa0872080:CDS 55.0%
GCAAAACTCACCTGCCATGC+AGG + chr6_1:7398177-7398196 Msa0872080:CDS 55.0%
! TTTCACCTCTTAGGTGGCGG+CGG + chr6_1:7398574-7398593 Msa0872080:three_prime_UTR 55.0%
TCCGGTAGAGTCACCGGATC+CGG - chr6_1:7395526-7395545 None:intergenic 60.0%
TGGTGCTCCGGTAGAGTCAC+CGG - chr6_1:7395532-7395551 None:intergenic 60.0%
GCCAGAGATACTGGACTGCC+GGG + chr6_1:7397258-7397277 Msa0872080:CDS 60.0%
CCAGAGATACTGGACTGCCG+GGG + chr6_1:7397259-7397278 Msa0872080:CDS 60.0%
CAGAGATACTGGACTGCCGG+GGG + chr6_1:7397260-7397279 Msa0872080:CDS 60.0%
TTCCTACGACCGGCACCTAC+AGG - chr6_1:7397302-7397321 None:intergenic 60.0%
GGGTAGTACGGAACTTGCGG+TGG - chr6_1:7397698-7397717 None:intergenic 60.0%
CCGCAAGTTCCGTACTACCC+TGG + chr6_1:7397698-7397717 Msa0872080:CDS 60.0%
!! CAAGGGGCACCAGGGTAGTA+CGG - chr6_1:7397710-7397729 None:intergenic 60.0%
!! GCAAAAGCCAAGGGGCACCA+GGG - chr6_1:7397718-7397737 None:intergenic 60.0%
!! GTGCCCCTTGGCTTTTGCCA+TGG + chr6_1:7397720-7397739 Msa0872080:CDS 60.0%
CGGTGGAGGATAGAGTGGCA+TGG - chr6_1:7397807-7397826 None:intergenic 60.0%
!! GTTTTAGCATGCCCGGTGCG+TGG + chr6_1:7397837-7397856 Msa0872080:CDS 60.0%
CCGGTGCGTGGAACAATCCA+TGG + chr6_1:7397849-7397868 Msa0872080:CDS 60.0%
!! TGCTGCTGGATTGGCCTGCA+TGG - chr6_1:7398194-7398213 None:intergenic 60.0%
CGAGACATGCGCCAGACAGA+AGG - chr6_1:7399000-7399019 None:intergenic 60.0%
CCGGCAGAGATCTCCGGTAC+CGG - chr6_1:7395507-7395526 None:intergenic 65.0%
! CCGGTACCGGAGATCTCTGC+CGG + chr6_1:7395504-7395523 Msa0872080:CDS 65.0%
CCGGATCCGGCAGAGATCTC+CGG - chr6_1:7395513-7395532 None:intergenic 65.0%
CCGGAGATCTCTGCCGGATC+CGG + chr6_1:7395510-7395529 Msa0872080:CDS 65.0%
GCCGGATCCGGTGACTCTAC+CGG + chr6_1:7395522-7395541 Msa0872080:CDS 65.0%
CCCCGGCAGTCCAGTATCTC+TGG - chr6_1:7397262-7397281 None:intergenic 65.0%
!! TGCCTGTAGGTGCCGGTCGT+AGG + chr6_1:7397297-7397316 Msa0872080:CDS 65.0%
CGTACTACCCTGGTGCCCCT+TGG + chr6_1:7397708-7397727 Msa0872080:CDS 65.0%
!! GGCAAAAGCCAAGGGGCACC+AGG - chr6_1:7397719-7397738 None:intergenic 65.0%
! GCAGACTCGATTCGTGGGGG+AGG + chr6_1:7398109-7398128 Msa0872080:CDS 65.0%
!! GCTGGATTGGCCTGCATGGC+AGG - chr6_1:7398190-7398209 None:intergenic 65.0%
CCTTGCCGCCGCCACCTAAG+AGG - chr6_1:7398582-7398601 None:intergenic 70.0%
! CCTCTTAGGTGGCGGCGGCA+AGG + chr6_1:7398579-7398598 Msa0872080:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 7395324 7399020 7395324 ID=Msa0872080;Name=Msa0872080
chr6_1 mRNA 7395324 7399020 7395324 ID=Msa0872080-mRNA-1;Parent=Msa0872080;Name=Msa0872080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|771|494
chr6_1 exon 7395324 7395638 7395324 ID=Msa0872080-mRNA-1:exon:2205;Parent=Msa0872080-mRNA-1
chr6_1 exon 7396945 7399020 7396945 ID=Msa0872080-mRNA-1:exon:2206;Parent=Msa0872080-mRNA-1
chr6_1 five_prime_UTR 7395324 7395458 7395324 ID=Msa0872080-mRNA-1:five_prime_utr;Parent=Msa0872080-mRNA-1
chr6_1 CDS 7395459 7395638 7395459 ID=Msa0872080-mRNA-1:cds;Parent=Msa0872080-mRNA-1
chr6_1 CDS 7396945 7398249 7396945 ID=Msa0872080-mRNA-1:cds;Parent=Msa0872080-mRNA-1
chr6_1 three_prime_UTR 7398250 7399020 7398250 ID=Msa0872080-mRNA-1:three_prime_utr;Parent=Msa0872080-mRNA-1
Gene Sequence

>Msa0872080

ATGGAAGCAAAAGACCCTGGGATCAAGCTTTTTGGGAAGACAATTCCGGTACCGGAGATCTCTGCCGGATCCGGTGACTCTACCGGAGCACCAGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGGTTCTTCCATGGATGAAGAAGAGAGAGAAATTGATGAGGACACAATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGGTCACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGTGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGCTGTTCAGAATTCTCAATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACTGATACACCCTTGTGTGAATCAATGCAATCTGCATTGAACCTTGCTGATAAAGGAGTTAATATTTCCGCGAAAAACGGAATCATTAGACCGGAAGGTCTACGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCGGACACATCAACAGCTCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCGCAAGTTCCGTACTACCCTGGTGCCCCTTGGCTTTTGCCATGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCATCACCAAATAGTGCAGCCATTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCGTGCTCAAACCAACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACATTGAGGATTGATGACTTGGGAGAAGCGGAAAAAAGCTCTATATTGACAACTCTCGGGATTCCAAACAATAAGGCAGACTCGATTCGTGGGGGAGGACTTTTCAAAGCATTTTCTTCAAAGGGCAATGAAAAAGATAGCATGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA
Protein sequence

>Msa0872080

MEAKDPGIKLFGKTIPVPEISAGSGDSTGAPASSSGDAVDDGIIQNHGSSMDEEEREIDEDTMEDESTKCKKEKDEALTQSSEKVTDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMQSALNLADKGVNISAKNGIIRPEGLRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAINSGPNSPTLGKHSREESVLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIPNNKADSIRGGGLFKAFSSKGNEKDSMQNSPAMQANPAAMSRSISFHETS*