AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905400 MtrunA17_Chr6g0453321 93.712 493 31 0 2 494 3 495 0.0 943
Msa0905400 MtrunA17_Chr7g0217581 55.403 509 188 9 1 494 99 583 7.05e-175 504
Msa0905400 MtrunA17_Chr4g0042481 44.048 504 226 17 2 492 3 463 2.58e-117 353
Msa0905400 MtrunA17_Chr3g0092111 42.745 510 230 18 1 494 2 465 6.89e-96 298
Msa0905400 MtrunA17_Chr7g0254161 36.992 492 213 21 4 474 8 423 6.06e-66 219
Msa0905400 MtrunA17_Chr8g0355261 37.209 387 175 15 122 493 105 438 1.01e-64 216
Msa0905400 MtrunA17_Chr5g0417601 36.342 421 146 12 73 492 80 379 6.06e-64 212
Msa0905400 MtrunA17_Chr5g0417561 35.885 418 131 17 85 492 71 361 7.59e-56 190
Msa0905400 MtrunA17_Chr5g0417551 33.400 497 191 18 5 492 4 369 1.90e-55 189
Msa0905400 MtrunA17_Chr6g0460731 39.683 252 116 8 92 327 51 282 1.50e-44 160
Msa0905400 MtrunA17_Chr6g0460721 41.393 244 110 9 95 329 47 266 2.21e-42 153
Msa0905400 MtrunA17_Chr5g0417571 43.137 204 102 5 8 199 7 208 5.00e-41 149
Msa0905400 MtrunA17_Chr2g0283811 81.538 65 11 1 125 188 36 100 9.39e-34 125
Msa0905400 MtrunA17_Chr3g0127201 67.742 62 20 0 130 191 22 83 6.04e-26 107
Msa0905400 MtrunA17_Chr8g0374251 75.926 54 13 0 135 188 68 121 3.06e-25 106
Msa0905400 MtrunA17_Chr8g0374111 44.915 118 53 3 135 243 29 143 3.49e-25 103
Msa0905400 MtrunA17_Chr2g0328021 50.549 91 44 1 99 188 25 115 3.82e-25 105
Msa0905400 MtrunA17_Chr4g0010151 68.966 58 18 0 131 188 78 135 5.40e-25 106
Msa0905400 MtrunA17_Chr8g0346551 50.538 93 36 1 130 212 19 111 5.58e-25 103
Msa0905400 MtrunA17_Chr4g0031411 51.087 92 43 1 128 217 68 159 1.77e-24 103
Msa0905400 MtrunA17_Chr2g0326001 69.492 59 18 0 130 188 35 93 1.82e-24 103
Msa0905400 MtrunA17_Chr2g0308011 77.551 49 11 0 135 183 37 85 2.31e-24 100
Msa0905400 MtrunA17_Chr8g0341671 75.000 52 13 0 135 186 20 71 2.68e-24 100
Msa0905400 MtrunA17_Chr4g0061761 69.811 53 16 0 133 185 38 90 7.56e-24 102
Msa0905400 MtrunA17_Chr1g0188851 62.712 59 22 0 129 187 37 95 1.98e-23 100
Msa0905400 MtrunA17_Chr7g0223311 76.471 51 12 0 137 187 79 129 2.43e-23 101
Msa0905400 MtrunA17_Chr4g0047001 75.000 52 13 0 137 188 57 108 3.62e-23 101
Msa0905400 MtrunA17_Chr3g0126201 58.108 74 20 1 137 210 53 115 4.10e-23 100
Msa0905400 MtrunA17_Chr8g0367161 47.368 95 45 2 123 217 20 109 4.79e-23 100
Msa0905400 MtrunA17_Chr5g0411951 67.273 55 18 0 131 185 39 93 6.44e-23 99.8
Msa0905400 MtrunA17_Chr7g0237921 71.154 52 15 0 137 188 78 129 1.34e-22 99.0
Msa0905400 MtrunA17_Chr2g0282511 55.844 77 31 1 107 183 20 93 1.55e-22 98.2
Msa0905400 MtrunA17_Chr3g0117601 45.455 110 53 1 97 206 30 132 1.73e-22 98.6
Msa0905400 MtrunA17_Chr1g0177251 54.321 81 34 2 130 207 6 86 1.76e-22 97.4
Msa0905400 MtrunA17_Chr4g0030051 65.625 64 21 1 125 187 30 93 3.09e-22 96.7
Msa0905400 MtrunA17_Chr4g0047761 66.667 54 18 0 135 188 72 125 9.57e-22 95.9
Msa0905400 MtrunA17_Chr2g0282051 73.077 52 13 1 137 188 48 98 9.64e-22 95.1
Msa0905400 MtrunA17_Chr2g0282441 70.000 50 15 0 137 186 27 76 2.02e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905400 AT5G39660.3 41.698 530 194 24 5 494 3 457 2.60e-103 317
Msa0905400 AT5G39660.1 41.698 530 194 24 5 494 3 457 2.60e-103 317
Msa0905400 AT5G39660.2 41.698 530 194 24 5 494 3 457 2.60e-103 317
Msa0905400 AT3G47500.1 39.370 508 228 19 1 492 3 446 2.03e-80 257
Msa0905400 AT5G62430.1 36.896 393 121 17 105 492 26 296 1.79e-52 179
Msa0905400 AT1G69570.1 34.677 372 137 14 128 493 125 396 6.13e-47 168
Msa0905400 AT1G26790.1 57.463 134 48 3 80 209 59 187 1.10e-37 142
Msa0905400 AT1G29160.1 86.667 60 8 0 129 188 56 115 3.94e-35 129
Msa0905400 AT2G34140.1 83.333 60 10 0 129 188 52 111 1.92e-33 125
Msa0905400 AT5G60850.1 61.429 70 27 0 123 192 39 108 4.41e-26 108
Msa0905400 AT1G51700.1 72.881 59 15 1 135 192 33 91 1.96e-25 103
Msa0905400 AT3G55370.2 60.870 69 27 0 131 199 72 140 3.39e-25 107
Msa0905400 AT3G55370.1 60.870 69 27 0 131 199 72 140 3.56e-25 106
Msa0905400 AT5G60200.1 55.172 87 37 2 131 215 51 137 5.05e-25 104
Msa0905400 AT3G55370.3 60.870 69 27 0 131 199 117 185 5.75e-25 106
Msa0905400 AT3G21270.1 77.358 53 12 0 135 187 29 81 1.30e-24 101
Msa0905400 AT1G07640.1 61.111 72 25 1 116 187 5 73 1.58e-24 103
Msa0905400 AT2G28810.2 65.574 61 21 0 126 186 68 128 1.58e-24 104
Msa0905400 AT3G45610.1 56.944 72 30 1 131 201 36 107 1.67e-24 102
Msa0905400 AT3G61850.2 63.492 63 23 0 130 192 57 119 2.30e-24 103
Msa0905400 AT3G61850.3 63.492 63 23 0 130 192 57 119 2.30e-24 103
Msa0905400 AT2G28810.1 65.574 61 21 0 126 186 85 145 2.41e-24 104
Msa0905400 AT3G61850.1 63.492 63 23 0 130 192 69 131 2.71e-24 103
Msa0905400 AT3G50410.1 73.585 53 14 0 135 187 30 82 3.16e-24 102
Msa0905400 AT1G07640.2 75.472 53 13 0 135 187 77 129 3.63e-24 103
Msa0905400 AT3G61850.5 63.492 63 23 0 130 192 57 119 3.84e-24 103
Msa0905400 AT3G61850.4 63.492 63 23 0 130 192 69 131 3.97e-24 103
Msa0905400 AT2G37590.1 67.241 58 19 0 131 188 85 142 4.13e-24 103
Msa0905400 AT5G65590.1 73.214 56 15 0 135 190 41 96 4.22e-24 103
Msa0905400 AT1G07640.3 75.472 53 13 0 135 187 85 137 4.35e-24 103
Msa0905400 AT4G38000.1 52.874 87 39 2 134 219 40 125 4.95e-24 101
Msa0905400 AT4G24060.1 68.421 57 18 0 132 188 50 106 7.07e-24 102
Msa0905400 AT1G64620.1 71.154 52 15 0 132 183 46 97 4.14e-23 100
Msa0905400 AT1G28310.1 72.222 54 15 0 135 188 27 80 4.49e-23 100
Msa0905400 AT5G02460.1 67.241 58 19 0 131 188 91 148 5.85e-23 101
Msa0905400 AT1G28310.2 72.222 54 15 0 135 188 51 104 7.31e-23 99.8
Msa0905400 AT2G28510.1 69.643 56 17 0 137 192 50 105 7.34e-23 99.0
Msa0905400 AT5G66940.1 67.925 53 17 0 135 187 32 84 2.17e-22 95.9
Msa0905400 AT4G00940.1 66.102 59 20 0 130 188 63 121 3.02e-22 97.4
Msa0905400 AT4G00940.3 66.102 59 20 0 130 188 63 121 3.02e-22 97.4
Msa0905400 AT4G00940.2 66.102 59 20 0 130 188 63 121 3.02e-22 97.4
Msa0905400 AT1G47655.1 73.469 49 13 0 135 183 29 77 3.72e-22 95.1
Msa0905400 AT2G46590.1 67.925 53 17 0 130 182 63 115 7.04e-22 97.4
Msa0905400 AT2G46590.2 67.925 53 17 0 130 182 75 127 7.35e-22 97.4
Msa0905400 AT3G52440.1 69.231 52 16 0 137 188 27 78 7.88e-22 95.1
Msa0905400 AT3G52440.2 69.231 52 16 0 137 188 46 97 1.02e-21 95.1
Msa0905400 AT1G21340.1 66.667 54 18 0 137 190 40 93 1.41e-21 94.7
Msa0905400 AT4G21050.1 57.353 68 29 0 121 188 10 77 4.98e-21 91.7
Msa0905400 AT5G62940.1 69.388 49 15 0 137 185 75 123 7.66e-20 91.7
Msa0905400 AT4G21040.1 49.412 85 36 2 137 221 27 104 1.01e-18 85.9
Msa0905400 AT4G21080.1 53.333 75 31 2 137 208 27 100 5.67e-18 84.0
Msa0905400 AT4G21030.1 56.818 44 19 0 137 180 23 66 7.44e-11 62.0

Find 165 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCTGCATTCGCTTTA+AGG 0.108754 6_2:+3519602 Msa0905400:three_prime_UTR
TCTATCCTCCACCGGCTTAT+TGG 0.171714 6_2:+3518892 Msa0905400:CDS
CTATCCTCCACCGGCTTATT+GGG 0.204943 6_2:+3518893 Msa0905400:CDS
ATTGAAAACTTCAAAGATTA+TGG 0.206877 6_2:+3518170 Msa0905400:CDS
CCATTAATGATTTGAGAAAA+TGG 0.248653 6_2:+3519434 Msa0905400:three_prime_UTR
GGTGGGAAGCTTTGACAATT+TGG 0.253300 6_2:-3518756 None:intergenic
CTGTTTCGGGTACAGTTATT+TGG 0.254197 6_2:-3518428 None:intergenic
CATGGTAGCTTTCATGTTAC+AGG 0.256387 6_2:+3519969 Msa0905400:three_prime_UTR
GTTATTGTAGTAGCAGAATT+TGG 0.264718 6_2:-3518277 None:intergenic
GAGTTAATGGCTGCACTATT+TGG 0.273329 6_2:-3518969 None:intergenic
GCAAGAAATGCCAGAGATAC+TGG 0.298374 6_2:+3518328 Msa0905400:CDS
GCAGAGTAGTTTCACCTCTT+AGG 0.306697 6_2:+3519644 Msa0905400:three_prime_UTR
CGAGTTAGGACCGGAGTTAA+TGG 0.309987 6_2:-3518982 None:intergenic
ATCGAGTCTGCCTTATTGTT+TGG 0.312583 6_2:-3519176 None:intergenic
AGAATTCTGAACAGCTGTTT+CGG 0.322405 6_2:-3518442 None:intergenic
GAATTCTGAACAGCTGTTTC+GGG 0.323421 6_2:-3518441 None:intergenic
GCTGGATTGGCCTGCATGGC+AGG 0.325373 6_2:-3519266 None:intergenic
TTACCTAAGGTTGGCGAGTT+AGG 0.325633 6_2:-3518996 None:intergenic
TTCATAGCTGTTGCGTCAAT+TGG 0.347659 6_2:-3519377 None:intergenic
GGTGTCCATGCTATTACAAC+GGG 0.366283 6_2:-3518256 None:intergenic
TGCTGCTGGATTGGCCTGCA+TGG 0.384791 6_2:-3519270 None:intergenic
GCATTGAACCTTGCTGATAA+AGG 0.387819 6_2:+3518567 Msa0905400:CDS
GGAGCACCAGCTTCATCTTC+TGG 0.388137 6_2:+3516627 Msa0905400:CDS
ATATACATCAACGATCTTGC+TGG 0.391847 6_2:-3519778 None:intergenic
CCTAGACATTGCTGCTGGAT+TGG 0.394113 6_2:-3519279 None:intergenic
ACATGAATCCGTAGACCTTC+CGG 0.402858 6_2:-3518624 None:intergenic
TGATGTGTCCGAAGATTTGA+TGG 0.404612 6_2:-3518682 None:intergenic
ATGGCACAGTCTTTACATTC+AGG 0.405324 6_2:+3518511 Msa0905400:CDS
TCTCGGGATTCCAAACAATA+AGG 0.410029 6_2:+3519166 Msa0905400:CDS
ATTGGATGCAAACGTGACTT+TGG 0.413283 6_2:+3519935 Msa0905400:three_prime_UTR
CAACCTTAGGTAAGCATTCA+AGG 0.416860 6_2:+3519006 Msa0905400:CDS
AACATTGAGGATTGATGACT+TGG 0.417618 6_2:+3519112 Msa0905400:CDS
AGCTCTATATTGACAACTCT+CGG 0.418682 6_2:+3519149 Msa0905400:CDS
CCCCGGCAGTCCAGTATCTC+TGG 0.422379 6_2:-3518338 None:intergenic
TTCCCTTGAATGCTTACCTA+AGG 0.425560 6_2:-3519009 None:intergenic
GGCAAAAGCCAAGGGGCACC+AGG 0.430656 6_2:-3518795 None:intergenic
TTCTCTCTCTTCTTCATCCA+TGG 0.431823 6_2:-3516691 None:intergenic
AGTTAGTTCTTGTTGATCAA+TGG 0.444575 6_2:+3519561 Msa0905400:three_prime_UTR
AGACACAAACTCAAGATTAG+TGG 0.448603 6_2:+3518107 Msa0905400:CDS
ATAAAGAAGAAAAGTCCCTT+TGG 0.450455 6_2:+3519081 Msa0905400:CDS
AAGAAAGCAATCTAAAAGAA+AGG 0.452021 6_2:-3519697 None:intergenic
TGGGAAGACAATTCCGGTAC+CGG 0.455670 6_2:+3516575 Msa0905400:CDS
CCTTGCCGCCGCCACCTAAG+AGG 0.455766 6_2:-3519658 None:intergenic
GCAAAACTCACCTGCCATGC+AGG 0.456838 6_2:+3519256 Msa0905400:CDS
TCCGGTAGAGTCACCGGATC+CGG 0.459421 6_2:-3516607 None:intergenic
GCCAGAGATACTGGACTGCC+GGG 0.460238 6_2:+3518337 Msa0905400:CDS
AATGGAAGAAATTGAGAAGA+TGG 0.461846 6_2:+3519579 Msa0905400:three_prime_UTR
CCGGATATCTCTGCCGGATC+CGG 0.463662 6_2:+3516594 Msa0905400:CDS
CTCAAACCAACCGACTCAAC+AGG 0.464405 6_2:+3519041 Msa0905400:CDS
TGCCATGGAATCCATCTCAA+TGG 0.464497 6_2:+3518814 Msa0905400:CDS
TAAAGAAGAAAAGTCCCTTT+GGG 0.467980 6_2:+3519082 Msa0905400:CDS
CGGCGTCCTAAAATCACATC+AGG 0.473709 6_2:-3520011 None:intergenic
CCATGGATTGTTCCACGCAC+CGG 0.474496 6_2:-3518928 None:intergenic
GGTCCTAACTCGCCAACCTT+AGG 0.475475 6_2:+3518993 Msa0905400:CDS
TCAGAACCTGTTGAGTCGGT+TGG 0.477638 6_2:-3519047 None:intergenic
TGCCAGAGATACTGGACTGC+CGG 0.478106 6_2:+3518336 Msa0905400:CDS
TGATCATTCCATCAAATCTT+CGG 0.483222 6_2:+3518674 Msa0905400:CDS
CTTGAATGCTTACCTAAGGT+TGG 0.484913 6_2:-3519005 None:intergenic
CACATTTCTCATGGCTCCCC+CGG 0.486523 6_2:-3518355 None:intergenic
GAAGGATGATGGACTCCGTT+TGG 0.487346 6_2:-3518477 None:intergenic
AACTTGTTCAAGAGAACTGC+TGG 0.493603 6_2:-3518730 None:intergenic
CCGGATCCGGCAGAGATATC+CGG 0.494232 6_2:-3516594 None:intergenic
TTCCTACGACCGGCACCTAC+AGG 0.494832 6_2:-3518378 None:intergenic
TGGATAACTATGCATGTGTT+TGG 0.495117 6_2:+3519901 Msa0905400:three_prime_UTR
AGAAAGCAATCTAAAAGAAA+GGG 0.498330 6_2:-3519696 None:intergenic
CTTCTGTCTGGCGCATGTCT+CGG 0.500469 6_2:+3520077 Msa0905400:three_prime_UTR
TTTGTGTGCAACCTTCTGTC+TGG 0.502089 6_2:+3520065 Msa0905400:three_prime_UTR
TACAGTTCAGTGAAGGATGA+TGG 0.503313 6_2:-3518488 None:intergenic
CTCCATTGAGATGGATTCCA+TGG 0.506520 6_2:-3518816 None:intergenic
TTCGTCAGAACCTGTTGAGT+CGG 0.506659 6_2:-3519051 None:intergenic
TCAAAACCATGGTTCTTCCA+TGG 0.507388 6_2:+3516674 Msa0905400:CDS
GCCGGATCCGGTGACTCTAC+CGG 0.509037 6_2:+3516606 Msa0905400:CDS
TCTCAATCCGACTCGCCAAA+CGG 0.513729 6_2:+3518462 Msa0905400:CDS
TCTGGTGATGCTGTTGATGA+TGG 0.515932 6_2:+3516645 Msa0905400:CDS
CATGGATTGTTCCACGCACC+GGG 0.516259 6_2:-3518927 None:intergenic
TTATAAGCTACATAATTATG+AGG 0.516746 6_2:-3519321 None:intergenic
CCTCTTAGGTGGCGGCGGCA+AGG 0.519889 6_2:+3519658 Msa0905400:three_prime_UTR
ATGGACTCCGTTTGGCGAGT+CGG 0.520233 6_2:-3518469 None:intergenic
TCATTAGACCGGAAGGTCTA+CGG 0.522416 6_2:+3518616 Msa0905400:CDS
CCAATCCAGCAGCAATGTCT+AGG 0.524624 6_2:+3519279 Msa0905400:CDS
TCTCACCCAATCATCAGAAA+AGG 0.525594 6_2:+3518074 Msa0905400:CDS
CATCCTTCACTGAACTGTAA+TGG 0.526917 6_2:+3518492 Msa0905400:CDS
ATTGACCTAGACATTGCTGC+TGG 0.532105 6_2:-3519284 None:intergenic
AGAAGATGAAGCTGGTGCTC+CGG 0.532773 6_2:-3516625 None:intergenic
ACTTGAGAGCTCCATTGAGA+TGG 0.535364 6_2:-3518825 None:intergenic
GTGGCATGGCAAATCCTTGT+GGG 0.536245 6_2:-3518869 None:intergenic
TGGTGCTCCGGTAGAGTCAC+CGG 0.536837 6_2:-3516613 None:intergenic
GCTCTATATTGACAACTCTC+GGG 0.539504 6_2:+3519150 Msa0905400:CDS
TGCGTGGAACAATCCATGGC+TGG 0.539604 6_2:+3518932 Msa0905400:CDS
CAAGGGGCACCAGGGTAGTA+CGG 0.543849 6_2:-3518786 None:intergenic
TTTCACCTCTTAGGTGGCGG+CGG 0.545372 6_2:+3519653 Msa0905400:three_prime_UTR
GGATTCCATGGCAAAAGCCA+AGG 0.546404 6_2:-3518804 None:intergenic
TAGTTTCACCTCTTAGGTGG+CGG 0.547587 6_2:+3519650 Msa0905400:three_prime_UTR
CGAGACATGCGCCAGACAGA+AGG 0.550848 6_2:-3520076 None:intergenic
TTTGGGTTCCGAAAACATTG+AGG 0.554840 6_2:+3519099 Msa0905400:CDS
TGAATCGACCAAATGTAAGA+AGG 0.555366 6_2:+3518038 Msa0905400:CDS
CCGGTACCGGATATCTCTGC+CGG 0.555389 6_2:+3516588 Msa0905400:CDS
TTCGGCGTCCATGTTCAAGT+CGG 0.556549 6_2:-3520031 None:intergenic
TATTAACTCCTTTATCAGCA+AGG 0.557069 6_2:-3518575 None:intergenic
TATCCTCCACCGGCTTATTG+GGG 0.557577 6_2:+3518894 Msa0905400:CDS
TTAGGACGCCGACTTGAACA+TGG 0.559285 6_2:+3520023 Msa0905400:three_prime_UTR
ATTCTTGTTCTTCCTACGAC+CGG 0.559859 6_2:-3518388 None:intergenic
CTTCATCCATGGAAGAACCA+TGG 0.559893 6_2:-3516680 None:intergenic
ATGCTAAAACCCCAATAAGC+CGG 0.561380 6_2:-3518903 None:intergenic
TGGTGTCCATGCTATTACAA+CGG 0.562401 6_2:-3518257 None:intergenic
ATCATGGAAGCAAAAGACCC+TGG 0.564274 6_2:+3516540 Msa0905400:exon
GCTGCACTATTTGGTGATGA+AGG 0.566444 6_2:-3518960 None:intergenic
TGCCTGTAGGTGCCGGTCGT+AGG 0.569339 6_2:+3518376 Msa0905400:CDS
TTTGCTCGTCCTCAGTGGAG+GGG 0.569766 6_2:-3518143 None:intergenic
AATAAGGCAGACTCGATTCG+TGG 0.569939 6_2:+3519182 Msa0905400:CDS
ACTTTGGACAAGCAGCTACA+TGG 0.570481 6_2:+3519951 Msa0905400:three_prime_UTR
CGGATTCATGTACCCTATGT+TGG 0.570976 6_2:+3518636 Msa0905400:CDS
ATAAGGCAGACTCGATTCGT+GGG 0.572613 6_2:+3519183 Msa0905400:CDS
GTGTCCCCGTTGTAATAGCA+TGG 0.578322 6_2:+3518251 Msa0905400:CDS
AAACCCCAATAAGCCGGTGG+AGG 0.580141 6_2:-3518897 None:intergenic
ACCTACAGGCACATTTCTCA+TGG 0.581950 6_2:-3518364 None:intergenic
GGGTAGTACGGAACTTGCGG+TGG 0.584630 6_2:-3518774 None:intergenic
AACGGAATCATTAGACCGGA+AGG 0.586342 6_2:+3518609 Msa0905400:CDS
GTGTCGATGTGTCTGTATCA+AGG 0.588057 6_2:-3519412 None:intergenic
GATTGATGACTTGGGAGAAG+CGG 0.590837 6_2:+3519121 Msa0905400:CDS
TAAGGTTGGCGAGTTAGGAC+CGG 0.591433 6_2:-3518991 None:intergenic
CCGCAAGTTCCGTACTACCC+TGG 0.592010 6_2:+3518777 Msa0905400:CDS
AATCTCCTTAAAGCGAATGC+AGG 0.592618 6_2:-3519607 None:intergenic
ATTTGAGAAAATGGACGTGT+TGG 0.594009 6_2:+3519443 Msa0905400:three_prime_UTR
CCGGTGCGTGGAACAATCCA+TGG 0.594068 6_2:+3518928 Msa0905400:CDS
AGAAATGTGCCTGTAGGTGC+CGG 0.595484 6_2:+3518369 Msa0905400:CDS
GAGTAGTTTCACCTCTTAGG+TGG 0.599213 6_2:+3519647 Msa0905400:three_prime_UTR
GCATCACCAGAAGATGAAGC+TGG 0.603079 6_2:-3516633 None:intergenic
TCATGGAAGCAAAAGACCCT+GGG 0.603420 6_2:+3516541 Msa0905400:exon
CCAGGGTAGTACGGAACTTG+CGG 0.603954 6_2:-3518777 None:intergenic
TACAAACTGTAAGAATACAT+TGG 0.604770 6_2:+3519517 Msa0905400:three_prime_UTR
GATTCCATGGCAAAAGCCAA+GGG 0.605584 6_2:-3518803 None:intergenic
TCATTTAGGTGCAATAAACA+TGG 0.605778 6_2:+3519862 Msa0905400:three_prime_UTR
CCGGCAGAGATATCCGGTAC+CGG 0.606081 6_2:-3516588 None:intergenic
GATGAAGGTTGTGCCAGCCA+TGG 0.606784 6_2:-3518945 None:intergenic
AACCTTAGGTAAGCATTCAA+GGG 0.609767 6_2:+3519007 Msa0905400:CDS
TGTTTGGTAGTGCATTACAT+TGG 0.610643 6_2:+3519917 Msa0905400:three_prime_UTR
CCAGAGATACTGGACTGCCG+GGG 0.615553 6_2:+3518338 Msa0905400:CDS
ATGCTATTACAACGGGGACA+CGG 0.617301 6_2:-3518249 None:intergenic
TAAGCTTATGTGACATAGTG+AGG 0.620731 6_2:+3519738 Msa0905400:three_prime_UTR
AGAAGAGAGAGAAATTGATG+AGG 0.620945 6_2:+3516701 Msa0905400:CDS
CATGCCACTCTATCCTCCAC+CGG 0.623143 6_2:+3518884 Msa0905400:CDS
TTCTTGAATTCAGGACACAA+TGG 0.623157 6_2:+3518011 Msa0905400:intron
TAAGCCGGTGGAGGATAGAG+TGG 0.624963 6_2:-3518888 None:intergenic
CAGAGATACTGGACTGCCGG+GGG 0.627532 6_2:+3518339 Msa0905400:CDS
AGTGGCATGGCAAATCCTTG+TGG 0.633181 6_2:-3518870 None:intergenic
AGATTGCATTGATTCACACA+AGG 0.639343 6_2:-3518544 None:intergenic
GACTCAACAGGTTCTGACGA+AGG 0.640024 6_2:+3519053 Msa0905400:CDS
AATAGTGCAGCCATTAACTC+CGG 0.645760 6_2:+3518972 Msa0905400:CDS
AGTGACACGTTATGTTTGTG+TGG 0.649491 6_2:-3516405 None:intergenic
TAAGGCAGACTCGATTCGTG+GGG 0.654612 6_2:+3519184 Msa0905400:CDS
GATGGTATCATTCAAAACCA+TGG 0.655530 6_2:+3516663 Msa0905400:CDS
GCAAAAGCCAAGGGGCACCA+GGG 0.656849 6_2:-3518794 None:intergenic
CGGTGGAGGATAGAGTGGCA+TGG 0.658087 6_2:-3518883 None:intergenic
GTGCCATTACAGTTCAGTGA+AGG 0.658325 6_2:-3518495 None:intergenic
ACATTGAGGATTGATGACTT+GGG 0.660611 6_2:+3519113 Msa0905400:CDS
GATTGCATTGATTCACACAA+GGG 0.666221 6_2:-3518543 None:intergenic
ATCAATTAACCCCTCCACTG+AGG 0.675714 6_2:+3518134 Msa0905400:CDS
GGTAGTACGGAACTTGCGGT+GGG 0.677836 6_2:-3518773 None:intergenic
CTAAAACCCCAATAAGCCGG+TGG 0.682119 6_2:-3518900 None:intergenic
GACGCAACAGCTATGAAACA+TGG 0.687461 6_2:+3519383 Msa0905400:three_prime_UTR
GCCATGAGAAATGTGCCTGT+AGG 0.725661 6_2:+3518363 Msa0905400:CDS
AAGGCAGACTCGATTCGTGG+GGG 0.727471 6_2:+3519185 Msa0905400:CDS
ATTCCATGGCAAAAGCCAAG+GGG 0.742778 6_2:-3518802 None:intergenic
GTGTCCATGCTATTACAACG+GGG 0.773351 6_2:-3518255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATGATGAAAAAAG+TGG - chr6_2:3516460-3516479 None:intergenic 15.0%
!! AAAAAAAAAACACACATAAA+AGG - chr6_2:3516845-3516864 None:intergenic 15.0%
!! ATAAAGAAAAAACAGATTTA+AGG + chr6_2:3517538-3517557 Msa0905400:intron 15.0%
!! AAAAAGAAACAGAAAAATCA+TGG + chr6_2:3516524-3516543 Msa0905400:exon 20.0%
!!! ATTTTCACATTTGAAATCAA+GGG - chr6_2:3516756-3516775 None:intergenic 20.0%
!!! TATTTTCACATTTGAAATCA+AGG - chr6_2:3516757-3516776 None:intergenic 20.0%
!! TCAAATGTGAAAATATTTAG+TGG + chr6_2:3516762-3516781 Msa0905400:intron 20.0%
!! CAAATGTGAAAATATTTAGT+GGG + chr6_2:3516763-3516782 Msa0905400:intron 20.0%
!!! TGTGTTTTTTTTTTGTTGAA+GGG + chr6_2:3516851-3516870 Msa0905400:intron 20.0%
!!! TTCAATTTTGGAATTGATTT+TGG + chr6_2:3516929-3516948 Msa0905400:intron 20.0%
!!! GATCATAGTTTTTTTTTGTT+TGG + chr6_2:3517100-3517119 Msa0905400:intron 20.0%
!! ATTGAAAACTTCAAAGATTA+TGG + chr6_2:3518170-3518189 Msa0905400:CDS 20.0%
!! TTATAAGCTACATAATTATG+AGG - chr6_2:3519324-3519343 None:intergenic 20.0%
!!! GTTTCAGAATTTTATCATTT+AGG + chr6_2:3519848-3519867 Msa0905400:three_prime_UTR 20.0%
!!! ATGGAAGTATTTTATCATTT+TGG + chr6_2:3519881-3519900 Msa0905400:three_prime_UTR 20.0%
!!! GTGTGTTTTTTTTTTGTTGA+AGG + chr6_2:3516850-3516869 Msa0905400:intron 25.0%
!!! GTTTGGATTTTGTGTTTTTT+TGG + chr6_2:3516885-3516904 Msa0905400:intron 25.0%
!!! TTTTTTGGATCTATGTTGTT+TGG + chr6_2:3516900-3516919 Msa0905400:intron 25.0%
!!! GTTTGGTTTTGTTTCAATTT+TGG + chr6_2:3516917-3516936 Msa0905400:intron 25.0%
!!! GGAATTGATTTTGGTTTTTA+AGG + chr6_2:3516938-3516957 Msa0905400:intron 25.0%
! GCTTAAGCTTAACATTAAAT+TGG + chr6_2:3517011-3517030 Msa0905400:intron 25.0%
! CTAGAACTAAATCAAAACTA+GGG - chr6_2:3517131-3517150 None:intergenic 25.0%
! TCATAATAACGAATCTAAGA+TGG - chr6_2:3517189-3517208 None:intergenic 25.0%
! TTCAGAATCAGATATAGAAA+AGG - chr6_2:3517446-3517465 None:intergenic 25.0%
!!! ATCTTTCTCTATTTAGCTTT+TGG + chr6_2:3517492-3517511 Msa0905400:intron 25.0%
!!! TCTTTCTCTATTTAGCTTTT+GGG + chr6_2:3517493-3517512 Msa0905400:intron 25.0%
! AAAAACAGATTTAAGGAGTA+AGG + chr6_2:3517545-3517564 Msa0905400:intron 25.0%
! CATAAATACTTGAGACTATT+CGG + chr6_2:3517805-3517824 Msa0905400:intron 25.0%
!! TCAAGATTTTTCTTGAATTC+AGG + chr6_2:3518002-3518021 Msa0905400:intron 25.0%
!! ATCTTTTTCCTTCTTACATT+TGG - chr6_2:3518049-3518068 None:intergenic 25.0%
!!! TTTCAAAGCATTTTCTTCAA+AGG + chr6_2:3519214-3519233 Msa0905400:CDS 25.0%
!!! TTCAAAGCATTTTCTTCAAA+GGG + chr6_2:3519215-3519234 Msa0905400:CDS 25.0%
!! CCATTTTCTCAAATCATTAA+TGG - chr6_2:3519437-3519456 None:intergenic 25.0%
! CCATTAATGATTTGAGAAAA+TGG + chr6_2:3519434-3519453 Msa0905400:three_prime_UTR 25.0%
! TACAAACTGTAAGAATACAT+TGG + chr6_2:3519517-3519536 Msa0905400:three_prime_UTR 25.0%
!!! CATTGGTTCATTTTTGTTTT+TGG + chr6_2:3519534-3519553 Msa0905400:three_prime_UTR 25.0%
! AGAAAGCAATCTAAAAGAAA+GGG - chr6_2:3519699-3519718 None:intergenic 25.0%
! AAGAAAGCAATCTAAAAGAA+AGG - chr6_2:3519700-3519719 None:intergenic 25.0%
!!! ACACAAATGATTGTTTTGTT+CGG - chr6_2:3520052-3520071 None:intergenic 25.0%
! TGTGAAAATATTTAGTGGGT+TGG + chr6_2:3516767-3516786 Msa0905400:intron 30.0%
GAAGGGTTTAGTATTTAGTT+TGG + chr6_2:3516868-3516887 Msa0905400:intron 30.0%
GCTAGAACTAAATCAAAACT+AGG - chr6_2:3517132-3517151 None:intergenic 30.0%
ACGATATCTATACTGAAACT+TGG - chr6_2:3517224-3517243 None:intergenic 30.0%
!! GTCAAACAAAGTTGATGTAT+TGG - chr6_2:3517325-3517344 None:intergenic 30.0%
ATAAACTCTATTTACTCCTC+TGG - chr6_2:3517347-3517366 None:intergenic 30.0%
GTTAAACACAATCAATACTC+TGG - chr6_2:3517400-3517419 None:intergenic 30.0%
!!! TTTTGTCATACTTTCTGGTT+TGG + chr6_2:3517594-3517613 Msa0905400:intron 30.0%
! TGACTATAGACAAAAGTACA+AGG - chr6_2:3517630-3517649 None:intergenic 30.0%
AATTAGTGCTTAATGCGTAA+AGG - chr6_2:3517940-3517959 None:intergenic 30.0%
!!! TATTTTGTCTGGCTTTTTCA+GGG - chr6_2:3518226-3518245 None:intergenic 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr6_2:3518280-3518299 None:intergenic 30.0%
TATTAACTCCTTTATCAGCA+AGG - chr6_2:3518578-3518597 None:intergenic 30.0%
GTTAATATTTCCGCGAAAAA+CGG + chr6_2:3518591-3518610 Msa0905400:CDS 30.0%
TGATCATTCCATCAAATCTT+CGG + chr6_2:3518674-3518693 Msa0905400:CDS 30.0%
ATAAAGAAGAAAAGTCCCTT+TGG + chr6_2:3519081-3519100 Msa0905400:CDS 30.0%
TAAAGAAGAAAAGTCCCTTT+GGG + chr6_2:3519082-3519101 Msa0905400:CDS 30.0%
! TCATCAATCCTCAATGTTTT+CGG - chr6_2:3519110-3519129 None:intergenic 30.0%
! AGTTAGTTCTTGTTGATCAA+TGG + chr6_2:3519561-3519580 Msa0905400:three_prime_UTR 30.0%
AATGGAAGAAATTGAGAAGA+TGG + chr6_2:3519579-3519598 Msa0905400:three_prime_UTR 30.0%
TCATTTAGGTGCAATAAACA+TGG + chr6_2:3519862-3519881 Msa0905400:three_prime_UTR 30.0%
GATGGTATCATTCAAAACCA+TGG + chr6_2:3516663-3516682 Msa0905400:CDS 35.0%
AGAAGAGAGAGAAATTGATG+AGG + chr6_2:3516701-3516720 Msa0905400:CDS 35.0%
GATGCTGTTGTAGTTTCTAA+TGG + chr6_2:3516989-3517008 Msa0905400:intron 35.0%
!! AAGTTTTAACCTGATGTGTC+TGG + chr6_2:3517286-3517305 Msa0905400:intron 35.0%
AAATTTGAACCAGACACATC+AGG - chr6_2:3517298-3517317 None:intergenic 35.0%
!!! AGCTTTTGGGTTTTGTATGT+TGG + chr6_2:3517506-3517525 Msa0905400:intron 35.0%
! GCTCATTTTGTCATACTTTC+TGG + chr6_2:3517589-3517608 Msa0905400:intron 35.0%
TTGTCTATAGTCAGCTAACA+TGG + chr6_2:3517637-3517656 Msa0905400:intron 35.0%
!! GCTATAGTACTGATTATCTG+TGG + chr6_2:3517666-3517685 Msa0905400:intron 35.0%
TTCTTGAATTCAGGACACAA+TGG + chr6_2:3518011-3518030 Msa0905400:intron 35.0%
TGAATCGACCAAATGTAAGA+AGG + chr6_2:3518038-3518057 Msa0905400:CDS 35.0%
! AGTGACCTTTTCTGATGATT+GGG - chr6_2:3518082-3518101 None:intergenic 35.0%
AGACACAAACTCAAGATTAG+TGG + chr6_2:3518107-3518126 Msa0905400:CDS 35.0%
!!! GTATTTTGTCTGGCTTTTTC+AGG - chr6_2:3518227-3518246 None:intergenic 35.0%
TCTGGCATTTCTTGCAAAAA+TGG - chr6_2:3518323-3518342 None:intergenic 35.0%
AGAATTCTGAACAGCTGTTT+CGG - chr6_2:3518445-3518464 None:intergenic 35.0%
!! GATTGCATTGATTCACACAA+GGG - chr6_2:3518546-3518565 None:intergenic 35.0%
!! AGATTGCATTGATTCACACA+AGG - chr6_2:3518547-3518566 None:intergenic 35.0%
!! TCTAATGATTCCGTTTTTCG+CGG - chr6_2:3518604-3518623 None:intergenic 35.0%
GAAAAACGGAATCATTAGAC+CGG + chr6_2:3518605-3518624 Msa0905400:CDS 35.0%
! CTCTTTTCTTCACCAACATA+GGG - chr6_2:3518651-3518670 None:intergenic 35.0%
! ACTCTTTTCTTCACCAACAT+AGG - chr6_2:3518652-3518671 None:intergenic 35.0%
AACCTTAGGTAAGCATTCAA+GGG + chr6_2:3519007-3519026 Msa0905400:CDS 35.0%
! AACATTGAGGATTGATGACT+TGG + chr6_2:3519112-3519131 Msa0905400:CDS 35.0%
! ACATTGAGGATTGATGACTT+GGG + chr6_2:3519113-3519132 Msa0905400:CDS 35.0%
AGCTCTATATTGACAACTCT+CGG + chr6_2:3519149-3519168 Msa0905400:CDS 35.0%
ATTTGAGAAAATGGACGTGT+TGG + chr6_2:3519443-3519462 Msa0905400:three_prime_UTR 35.0%
TAAGCTTATGTGACATAGTG+AGG + chr6_2:3519738-3519757 Msa0905400:three_prime_UTR 35.0%
ATATACATCAACGATCTTGC+TGG - chr6_2:3519781-3519800 None:intergenic 35.0%
TGGATAACTATGCATGTGTT+TGG + chr6_2:3519901-3519920 Msa0905400:three_prime_UTR 35.0%
!! TGTTTGGTAGTGCATTACAT+TGG + chr6_2:3519917-3519936 Msa0905400:three_prime_UTR 35.0%
! AAACTGCCTGATGTGATTTT+AGG + chr6_2:3520005-3520024 Msa0905400:three_prime_UTR 35.0%
!! GCTTTTTGGGAAGACAATTC+CGG + chr6_2:3516569-3516588 Msa0905400:CDS 40.0%
TCAAAACCATGGTTCTTCCA+TGG + chr6_2:3516674-3516693 Msa0905400:CDS 40.0%
TTCTCTCTCTTCTTCATCCA+TGG - chr6_2:3516694-3516713 None:intergenic 40.0%
!!! AGTGGGTTGGTGTTAGATTT+TGG + chr6_2:3516780-3516799 Msa0905400:intron 40.0%
! CATCAACTTTGTTTGACCAG+AGG + chr6_2:3517328-3517347 Msa0905400:intron 40.0%
TCTCACCCAATCATCAGAAA+AGG + chr6_2:3518074-3518093 Msa0905400:CDS 40.0%
! CAGTGACCTTTTCTGATGAT+TGG - chr6_2:3518083-3518102 None:intergenic 40.0%
TGGTGTCCATGCTATTACAA+CGG - chr6_2:3518260-3518279 None:intergenic 40.0%
CATTTCTTGCAAAAATGGCG+AGG - chr6_2:3518318-3518337 None:intergenic 40.0%
ATTCTTGTTCTTCCTACGAC+CGG - chr6_2:3518391-3518410 None:intergenic 40.0%
! CTGTTTCGGGTACAGTTATT+TGG - chr6_2:3518431-3518450 None:intergenic 40.0%
! GAATTCTGAACAGCTGTTTC+GGG - chr6_2:3518444-3518463 None:intergenic 40.0%
TACAGTTCAGTGAAGGATGA+TGG - chr6_2:3518491-3518510 None:intergenic 40.0%
CATCCTTCACTGAACTGTAA+TGG + chr6_2:3518492-3518511 Msa0905400:CDS 40.0%
ATGGCACAGTCTTTACATTC+AGG + chr6_2:3518511-3518530 Msa0905400:CDS 40.0%
GCATTGAACCTTGCTGATAA+AGG + chr6_2:3518567-3518586 Msa0905400:CDS 40.0%
TGATGTGTCCGAAGATTTGA+TGG - chr6_2:3518685-3518704 None:intergenic 40.0%
! AACTTGTTCAAGAGAACTGC+TGG - chr6_2:3518733-3518752 None:intergenic 40.0%
AATCCTTGTGGGAAAAAAGC+AGG - chr6_2:3518861-3518880 None:intergenic 40.0%
ATGCTAAAACCCCAATAAGC+CGG - chr6_2:3518906-3518925 None:intergenic 40.0%
GAGTTAATGGCTGCACTATT+TGG - chr6_2:3518972-3518991 None:intergenic 40.0%
AATAGTGCAGCCATTAACTC+CGG + chr6_2:3518972-3518991 Msa0905400:CDS 40.0%
CTTGAATGCTTACCTAAGGT+TGG - chr6_2:3519008-3519027 None:intergenic 40.0%
CAACCTTAGGTAAGCATTCA+AGG + chr6_2:3519006-3519025 Msa0905400:CDS 40.0%
TTCCCTTGAATGCTTACCTA+AGG - chr6_2:3519012-3519031 None:intergenic 40.0%
! CAATGTTTTCGGAACCCAAA+GGG - chr6_2:3519099-3519118 None:intergenic 40.0%
! TCAATGTTTTCGGAACCCAA+AGG - chr6_2:3519100-3519119 None:intergenic 40.0%
! TTTGGGTTCCGAAAACATTG+AGG + chr6_2:3519099-3519118 Msa0905400:CDS 40.0%
GCTCTATATTGACAACTCTC+GGG + chr6_2:3519150-3519169 Msa0905400:CDS 40.0%
TCTCGGGATTCCAAACAATA+AGG + chr6_2:3519166-3519185 Msa0905400:CDS 40.0%
! ATCGAGTCTGCCTTATTGTT+TGG - chr6_2:3519179-3519198 None:intergenic 40.0%
TTCATAGCTGTTGCGTCAAT+TGG - chr6_2:3519380-3519399 None:intergenic 40.0%
TTCTTCCTGCATTCGCTTTA+AGG + chr6_2:3519602-3519621 Msa0905400:three_prime_UTR 40.0%
AATCTCCTTAAAGCGAATGC+AGG - chr6_2:3519610-3519629 None:intergenic 40.0%
ATTGGATGCAAACGTGACTT+TGG + chr6_2:3519935-3519954 Msa0905400:three_prime_UTR 40.0%
CATGGTAGCTTTCATGTTAC+AGG + chr6_2:3519969-3519988 Msa0905400:three_prime_UTR 40.0%
ATCATGGAAGCAAAAGACCC+TGG + chr6_2:3516540-3516559 Msa0905400:exon 45.0%
TCATGGAAGCAAAAGACCCT+GGG + chr6_2:3516541-3516560 Msa0905400:exon 45.0%
! ACCCTGGGATCAAGCTTTTT+GGG + chr6_2:3516556-3516575 Msa0905400:CDS 45.0%
TCCCAAAAAGCTTGATCCCA+GGG - chr6_2:3516560-3516579 None:intergenic 45.0%
TTCCCAAAAAGCTTGATCCC+AGG - chr6_2:3516561-3516580 None:intergenic 45.0%
! TCTGGTGATGCTGTTGATGA+TGG + chr6_2:3516645-3516664 Msa0905400:CDS 45.0%
CTTCATCCATGGAAGAACCA+TGG - chr6_2:3516683-3516702 None:intergenic 45.0%
ATCAATTAACCCCTCCACTG+AGG + chr6_2:3518134-3518153 Msa0905400:CDS 45.0%
! TGTATTTTGCTCGTCCTCAG+TGG - chr6_2:3518151-3518170 None:intergenic 45.0%
ATGCTATTACAACGGGGACA+CGG - chr6_2:3518252-3518271 None:intergenic 45.0%
GTGTCCATGCTATTACAACG+GGG - chr6_2:3518258-3518277 None:intergenic 45.0%
GGTGTCCATGCTATTACAAC+GGG - chr6_2:3518259-3518278 None:intergenic 45.0%
GCAAGAAATGCCAGAGATAC+TGG + chr6_2:3518328-3518347 Msa0905400:CDS 45.0%
ACCTACAGGCACATTTCTCA+TGG - chr6_2:3518367-3518386 None:intergenic 45.0%
! GTGCCATTACAGTTCAGTGA+AGG - chr6_2:3518498-3518517 None:intergenic 45.0%
AACGGAATCATTAGACCGGA+AGG + chr6_2:3518609-3518628 Msa0905400:CDS 45.0%
TCATTAGACCGGAAGGTCTA+CGG + chr6_2:3518616-3518635 Msa0905400:CDS 45.0%
ACATGAATCCGTAGACCTTC+CGG - chr6_2:3518627-3518646 None:intergenic 45.0%
CGGATTCATGTACCCTATGT+TGG + chr6_2:3518636-3518655 Msa0905400:CDS 45.0%
! GGTGGGAAGCTTTGACAATT+TGG - chr6_2:3518759-3518778 None:intergenic 45.0%
ATTCCATGGCAAAAGCCAAG+GGG - chr6_2:3518805-3518824 None:intergenic 45.0%
GATTCCATGGCAAAAGCCAA+GGG - chr6_2:3518806-3518825 None:intergenic 45.0%
TGCCATGGAATCCATCTCAA+TGG + chr6_2:3518814-3518833 Msa0905400:CDS 45.0%
! CTCCATTGAGATGGATTCCA+TGG - chr6_2:3518819-3518838 None:intergenic 45.0%
ACTTGAGAGCTCCATTGAGA+TGG - chr6_2:3518828-3518847 None:intergenic 45.0%
!! TATTGGGGTTTTAGCATGCC+CGG + chr6_2:3518909-3518928 Msa0905400:CDS 45.0%
!! GCTGCACTATTTGGTGATGA+AGG - chr6_2:3518963-3518982 None:intergenic 45.0%
TTACCTAAGGTTGGCGAGTT+AGG - chr6_2:3518999-3519018 None:intergenic 45.0%
TTCGTCAGAACCTGTTGAGT+CGG - chr6_2:3519054-3519073 None:intergenic 45.0%
! GATTGATGACTTGGGAGAAG+CGG + chr6_2:3519121-3519140 Msa0905400:CDS 45.0%
! AATAAGGCAGACTCGATTCG+TGG + chr6_2:3519182-3519201 Msa0905400:CDS 45.0%
! ATAAGGCAGACTCGATTCGT+GGG + chr6_2:3519183-3519202 Msa0905400:CDS 45.0%
ATTGACCTAGACATTGCTGC+TGG - chr6_2:3519287-3519306 None:intergenic 45.0%
GACGCAACAGCTATGAAACA+TGG + chr6_2:3519383-3519402 Msa0905400:three_prime_UTR 45.0%
! GTGTCGATGTGTCTGTATCA+AGG - chr6_2:3519415-3519434 None:intergenic 45.0%
GCAGAGTAGTTTCACCTCTT+AGG + chr6_2:3519644-3519663 Msa0905400:three_prime_UTR 45.0%
GAGTAGTTTCACCTCTTAGG+TGG + chr6_2:3519647-3519666 Msa0905400:three_prime_UTR 45.0%
TAGTTTCACCTCTTAGGTGG+CGG + chr6_2:3519650-3519669 Msa0905400:three_prime_UTR 45.0%
ACTTTGGACAAGCAGCTACA+TGG + chr6_2:3519951-3519970 Msa0905400:three_prime_UTR 45.0%
TTTGTGTGCAACCTTCTGTC+TGG + chr6_2:3520065-3520084 Msa0905400:three_prime_UTR 45.0%
!!! TTTTATTTTTATGTATTTTT+TGG - chr6_2:3516502-3516521 None:intergenic 5.0%
! GACCCTGGGATCAAGCTTTT+TGG + chr6_2:3516555-3516574 Msa0905400:CDS 50.0%
TGGGAAGACAATTCCGGTAC+CGG + chr6_2:3516575-3516594 Msa0905400:CDS 50.0%
AGAAGATGAAGCTGGTGCTC+CGG - chr6_2:3516628-3516647 None:intergenic 50.0%
GCATCACCAGAAGATGAAGC+TGG - chr6_2:3516636-3516655 None:intergenic 50.0%
! TTTTGCTCGTCCTCAGTGGA+GGG - chr6_2:3518147-3518166 None:intergenic 50.0%
! ATTTTGCTCGTCCTCAGTGG+AGG - chr6_2:3518148-3518167 None:intergenic 50.0%
! GGACACGGCAGTATTTTGTC+TGG - chr6_2:3518237-3518256 None:intergenic 50.0%
GTGTCCCCGTTGTAATAGCA+TGG + chr6_2:3518251-3518270 Msa0905400:CDS 50.0%
TCTTGCAAAAATGGCGAGGC+TGG - chr6_2:3518314-3518333 None:intergenic 50.0%
GCCATGAGAAATGTGCCTGT+AGG + chr6_2:3518363-3518382 Msa0905400:CDS 50.0%
AGAAATGTGCCTGTAGGTGC+CGG + chr6_2:3518369-3518388 Msa0905400:CDS 50.0%
! TCTCAATCCGACTCGCCAAA+CGG + chr6_2:3518462-3518481 Msa0905400:CDS 50.0%
!! GAAGGATGATGGACTCCGTT+TGG - chr6_2:3518480-3518499 None:intergenic 50.0%
GGATTCCATGGCAAAAGCCA+AGG - chr6_2:3518807-3518826 None:intergenic 50.0%
TGTGGGAAAAAAGCAGGTGG+TGG - chr6_2:3518855-3518874 None:intergenic 50.0%
CCTTGTGGGAAAAAAGCAGG+TGG - chr6_2:3518858-3518877 None:intergenic 50.0%
!!! CCACCTGCTTTTTTCCCACA+AGG + chr6_2:3518855-3518874 Msa0905400:CDS 50.0%
GTGGCATGGCAAATCCTTGT+GGG - chr6_2:3518872-3518891 None:intergenic 50.0%
AGTGGCATGGCAAATCCTTG+TGG - chr6_2:3518873-3518892 None:intergenic 50.0%
!! TCTATCCTCCACCGGCTTAT+TGG + chr6_2:3518892-3518911 Msa0905400:CDS 50.0%
!! CTATCCTCCACCGGCTTATT+GGG + chr6_2:3518893-3518912 Msa0905400:CDS 50.0%
!! TATCCTCCACCGGCTTATTG+GGG + chr6_2:3518894-3518913 Msa0905400:CDS 50.0%
CTAAAACCCCAATAAGCCGG+TGG - chr6_2:3518903-3518922 None:intergenic 50.0%
CGAGTTAGGACCGGAGTTAA+TGG - chr6_2:3518985-3519004 None:intergenic 50.0%
TAAGGTTGGCGAGTTAGGAC+CGG - chr6_2:3518994-3519013 None:intergenic 50.0%
! CTCAAACCAACCGACTCAAC+AGG + chr6_2:3519041-3519060 Msa0905400:CDS 50.0%
TCAGAACCTGTTGAGTCGGT+TGG - chr6_2:3519050-3519069 None:intergenic 50.0%
! GACTCAACAGGTTCTGACGA+AGG + chr6_2:3519053-3519072 Msa0905400:CDS 50.0%
! TAAGGCAGACTCGATTCGTG+GGG + chr6_2:3519184-3519203 Msa0905400:CDS 50.0%
CCTAGACATTGCTGCTGGAT+TGG - chr6_2:3519282-3519301 None:intergenic 50.0%
CCAATCCAGCAGCAATGTCT+AGG + chr6_2:3519279-3519298 Msa0905400:CDS 50.0%
CGGCGTCCTAAAATCACATC+AGG - chr6_2:3520014-3520033 None:intergenic 50.0%
!! TTAGGACGCCGACTTGAACA+TGG + chr6_2:3520023-3520042 Msa0905400:three_prime_UTR 50.0%
TTCGGCGTCCATGTTCAAGT+CGG - chr6_2:3520034-3520053 None:intergenic 50.0%
! GGAGCACCAGCTTCATCTTC+TGG + chr6_2:3516627-3516646 Msa0905400:CDS 55.0%
TTTGCTCGTCCTCAGTGGAG+GGG - chr6_2:3518146-3518165 None:intergenic 55.0%
TGCCAGAGATACTGGACTGC+CGG + chr6_2:3518336-3518355 Msa0905400:CDS 55.0%
CACATTTCTCATGGCTCCCC+CGG - chr6_2:3518358-3518377 None:intergenic 55.0%
ATGGACTCCGTTTGGCGAGT+CGG - chr6_2:3518472-3518491 None:intergenic 55.0%
GGTAGTACGGAACTTGCGGT+GGG - chr6_2:3518776-3518795 None:intergenic 55.0%
CCAGGGTAGTACGGAACTTG+CGG - chr6_2:3518780-3518799 None:intergenic 55.0%
CATGCCACTCTATCCTCCAC+CGG + chr6_2:3518884-3518903 Msa0905400:CDS 55.0%
TAAGCCGGTGGAGGATAGAG+TGG - chr6_2:3518891-3518910 None:intergenic 55.0%
AAACCCCAATAAGCCGGTGG+AGG - chr6_2:3518900-3518919 None:intergenic 55.0%
! CATGGATTGTTCCACGCACC+GGG - chr6_2:3518930-3518949 None:intergenic 55.0%
! CCATGGATTGTTCCACGCAC+CGG - chr6_2:3518931-3518950 None:intergenic 55.0%
TGCGTGGAACAATCCATGGC+TGG + chr6_2:3518932-3518951 Msa0905400:CDS 55.0%
GATGAAGGTTGTGCCAGCCA+TGG - chr6_2:3518948-3518967 None:intergenic 55.0%
GGTCCTAACTCGCCAACCTT+AGG + chr6_2:3518993-3519012 Msa0905400:CDS 55.0%
! AAGGCAGACTCGATTCGTGG+GGG + chr6_2:3519185-3519204 Msa0905400:CDS 55.0%
GCAAAACTCACCTGCCATGC+AGG + chr6_2:3519256-3519275 Msa0905400:CDS 55.0%
! TTTCACCTCTTAGGTGGCGG+CGG + chr6_2:3519653-3519672 Msa0905400:three_prime_UTR 55.0%
CCGGCAGAGATATCCGGTAC+CGG - chr6_2:3516591-3516610 None:intergenic 60.0%
! CCGGTACCGGATATCTCTGC+CGG + chr6_2:3516588-3516607 Msa0905400:CDS 60.0%
CCGGATCCGGCAGAGATATC+CGG - chr6_2:3516597-3516616 None:intergenic 60.0%
CCGGATATCTCTGCCGGATC+CGG + chr6_2:3516594-3516613 Msa0905400:CDS 60.0%
TCCGGTAGAGTCACCGGATC+CGG - chr6_2:3516610-3516629 None:intergenic 60.0%
TGGTGCTCCGGTAGAGTCAC+CGG - chr6_2:3516616-3516635 None:intergenic 60.0%
GCCAGAGATACTGGACTGCC+GGG + chr6_2:3518337-3518356 Msa0905400:CDS 60.0%
CCAGAGATACTGGACTGCCG+GGG + chr6_2:3518338-3518357 Msa0905400:CDS 60.0%
CAGAGATACTGGACTGCCGG+GGG + chr6_2:3518339-3518358 Msa0905400:CDS 60.0%
TTCCTACGACCGGCACCTAC+AGG - chr6_2:3518381-3518400 None:intergenic 60.0%
GGGTAGTACGGAACTTGCGG+TGG - chr6_2:3518777-3518796 None:intergenic 60.0%
CCGCAAGTTCCGTACTACCC+TGG + chr6_2:3518777-3518796 Msa0905400:CDS 60.0%
!! CAAGGGGCACCAGGGTAGTA+CGG - chr6_2:3518789-3518808 None:intergenic 60.0%
!! GCAAAAGCCAAGGGGCACCA+GGG - chr6_2:3518797-3518816 None:intergenic 60.0%
!! GTGCCCCTTGGCTTTTGCCA+TGG + chr6_2:3518799-3518818 Msa0905400:CDS 60.0%
CGGTGGAGGATAGAGTGGCA+TGG - chr6_2:3518886-3518905 None:intergenic 60.0%
!! GTTTTAGCATGCCCGGTGCG+TGG + chr6_2:3518916-3518935 Msa0905400:CDS 60.0%
CCGGTGCGTGGAACAATCCA+TGG + chr6_2:3518928-3518947 Msa0905400:CDS 60.0%
!! TGCTGCTGGATTGGCCTGCA+TGG - chr6_2:3519273-3519292 None:intergenic 60.0%
CGAGACATGCGCCAGACAGA+AGG - chr6_2:3520079-3520098 None:intergenic 60.0%
GCCGGATCCGGTGACTCTAC+CGG + chr6_2:3516606-3516625 Msa0905400:CDS 65.0%
CCCCGGCAGTCCAGTATCTC+TGG - chr6_2:3518341-3518360 None:intergenic 65.0%
!! TGCCTGTAGGTGCCGGTCGT+AGG + chr6_2:3518376-3518395 Msa0905400:CDS 65.0%
CGTACTACCCTGGTGCCCCT+TGG + chr6_2:3518787-3518806 Msa0905400:CDS 65.0%
!! GGCAAAAGCCAAGGGGCACC+AGG - chr6_2:3518798-3518817 None:intergenic 65.0%
! GCAGACTCGATTCGTGGGGG+AGG + chr6_2:3519188-3519207 Msa0905400:CDS 65.0%
!! GCTGGATTGGCCTGCATGGC+AGG - chr6_2:3519269-3519288 None:intergenic 65.0%
CCTTGCCGCCGCCACCTAAG+AGG - chr6_2:3519661-3519680 None:intergenic 70.0%
! CCTCTTAGGTGGCGGCGGCA+AGG + chr6_2:3519658-3519677 Msa0905400:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3516408 3520099 3516408 ID=Msa0905400;Name=Msa0905400
chr6_2 mRNA 3516408 3520099 3516408 ID=Msa0905400-mRNA-1;Parent=Msa0905400;Name=Msa0905400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|771|494
chr6_2 exon 3516408 3516722 3516408 ID=Msa0905400-mRNA-1:exon:1052;Parent=Msa0905400-mRNA-1
chr6_2 exon 3518024 3520099 3518024 ID=Msa0905400-mRNA-1:exon:1053;Parent=Msa0905400-mRNA-1
chr6_2 five_prime_UTR 3516408 3516542 3516408 ID=Msa0905400-mRNA-1:five_prime_utr;Parent=Msa0905400-mRNA-1
chr6_2 CDS 3516543 3516722 3516543 ID=Msa0905400-mRNA-1:cds;Parent=Msa0905400-mRNA-1
chr6_2 CDS 3518024 3519328 3518024 ID=Msa0905400-mRNA-1:cds;Parent=Msa0905400-mRNA-1
chr6_2 three_prime_UTR 3519329 3520099 3519329 ID=Msa0905400-mRNA-1:three_prime_utr;Parent=Msa0905400-mRNA-1
Gene Sequence

>Msa0905400

ATGGAAGCAAAAGACCCTGGGATCAAGCTTTTTGGGAAGACAATTCCGGTACCGGATATCTCTGCCGGATCCGGTGACTCTACCGGAGCACCAGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGGTTCTTCCATGGATGAAGAAGAGAGAGAAATTGATGAGGACACAATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGGTCACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGTGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGCTGTTCAGAATTCTCAATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACTGATACACCCTTGTGTGAATCAATGCAATCTGCATTGAACCTTGCTGATAAAGGAGTTAATATTTCCGCGAAAAACGGAATCATTAGACCGGAAGGTCTACGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCGGACACATCAACAGCTCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCGCAAGTTCCGTACTACCCTGGTGCCCCTTGGCTTTTGCCATGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCATCACCAAATAGTGCAGCCATTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCGTGCTCAAACCAACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACATTGAGGATTGATGACTTGGGAGAAGCGGAAAAAAGCTCTATATTGACAACTCTCGGGATTCCAAACAATAAGGCAGACTCGATTCGTGGGGGAGGACTTTTCAAAGCATTTTCTTCAAAGGGCAATGAAAAAGATAGCATGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA
Protein sequence

>Msa0905400

MEAKDPGIKLFGKTIPVPDISAGSGDSTGAPASSSGDAVDDGIIQNHGSSMDEEEREIDEDTMEDESTKCKKEKDEALTQSSEKVTDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMQSALNLADKGVNISAKNGIIRPEGLRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAINSGPNSPTLGKHSREESVLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIPNNKADSIRGGGLFKAFSSKGNEKDSMQNSPAMQANPAAMSRSISFHETS*