AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937340 MtrunA17_Chr6g0453321 94.726 493 26 0 2 494 3 495 0.0 952
Msa0937340 MtrunA17_Chr7g0217581 55.599 509 187 9 1 494 99 583 2.68e-175 505
Msa0937340 MtrunA17_Chr4g0042481 44.246 504 225 17 2 492 3 463 1.99e-116 350
Msa0937340 MtrunA17_Chr3g0092111 42.941 510 229 18 1 494 2 465 3.40e-97 301
Msa0937340 MtrunA17_Chr7g0254161 36.585 492 215 20 4 474 8 423 1.89e-66 220
Msa0937340 MtrunA17_Chr8g0355261 37.468 387 174 15 122 493 105 438 4.23e-65 217
Msa0937340 MtrunA17_Chr5g0417601 36.342 421 146 12 73 492 80 379 9.45e-64 211
Msa0937340 MtrunA17_Chr5g0417551 35.990 414 136 16 85 492 79 369 1.93e-56 192
Msa0937340 MtrunA17_Chr5g0417561 36.124 418 130 17 85 492 71 361 5.66e-56 191
Msa0937340 MtrunA17_Chr6g0460731 34.402 343 142 10 1 327 7 282 8.37e-45 161
Msa0937340 MtrunA17_Chr6g0460721 41.393 244 110 9 95 329 47 266 1.85e-42 154
Msa0937340 MtrunA17_Chr5g0417571 43.137 204 102 5 8 199 7 208 6.59e-41 149
Msa0937340 MtrunA17_Chr2g0283811 81.538 65 11 1 125 188 36 100 8.22e-34 125
Msa0937340 MtrunA17_Chr3g0127201 68.852 61 19 0 130 190 22 82 5.42e-26 107
Msa0937340 MtrunA17_Chr8g0374251 75.926 54 13 0 135 188 68 121 2.83e-25 106
Msa0937340 MtrunA17_Chr8g0374111 44.915 118 53 3 135 243 29 143 3.46e-25 103
Msa0937340 MtrunA17_Chr2g0328021 50.549 91 44 1 99 188 25 115 3.75e-25 105
Msa0937340 MtrunA17_Chr8g0346551 50.538 93 36 1 130 212 19 111 4.87e-25 104
Msa0937340 MtrunA17_Chr4g0010151 68.966 58 18 0 131 188 78 135 5.56e-25 106
Msa0937340 MtrunA17_Chr4g0031411 51.087 92 43 1 128 217 68 159 1.64e-24 104
Msa0937340 MtrunA17_Chr2g0326001 69.492 59 18 0 130 188 35 93 1.72e-24 103
Msa0937340 MtrunA17_Chr2g0308011 77.551 49 11 0 135 183 37 85 2.07e-24 100
Msa0937340 MtrunA17_Chr8g0341671 75.000 52 13 0 135 186 20 71 2.41e-24 100
Msa0937340 MtrunA17_Chr4g0061761 69.811 53 16 0 133 185 38 90 7.34e-24 102
Msa0937340 MtrunA17_Chr1g0188851 69.811 53 16 0 135 187 43 95 1.88e-23 100
Msa0937340 MtrunA17_Chr7g0223311 76.471 51 12 0 137 187 79 129 2.25e-23 101
Msa0937340 MtrunA17_Chr4g0047001 75.000 52 13 0 137 188 57 108 3.32e-23 101
Msa0937340 MtrunA17_Chr3g0126201 58.108 74 20 1 137 210 53 115 3.69e-23 100
Msa0937340 MtrunA17_Chr8g0367161 47.368 95 45 2 123 217 20 109 4.66e-23 100
Msa0937340 MtrunA17_Chr5g0411951 67.273 55 18 0 131 185 39 93 5.69e-23 99.8
Msa0937340 MtrunA17_Chr7g0237921 71.154 52 15 0 137 188 78 129 1.26e-22 99.0
Msa0937340 MtrunA17_Chr2g0282511 55.844 77 31 1 107 183 20 93 1.42e-22 98.2
Msa0937340 MtrunA17_Chr3g0117601 45.455 110 53 1 97 206 30 132 1.56e-22 98.6
Msa0937340 MtrunA17_Chr1g0177251 54.321 81 34 2 130 207 6 86 1.66e-22 97.4
Msa0937340 MtrunA17_Chr4g0030051 65.625 64 21 1 125 187 30 93 2.97e-22 96.7
Msa0937340 MtrunA17_Chr4g0047761 66.667 54 18 0 135 188 72 125 8.29e-22 96.3
Msa0937340 MtrunA17_Chr2g0282051 73.077 52 13 1 137 188 48 98 8.68e-22 95.1
Msa0937340 MtrunA17_Chr2g0282441 70.000 50 15 0 137 186 27 76 1.86e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937340 AT5G39660.3 41.887 530 193 24 5 494 3 457 6.33e-104 318
Msa0937340 AT5G39660.1 41.887 530 193 24 5 494 3 457 6.33e-104 318
Msa0937340 AT5G39660.2 41.887 530 193 24 5 494 3 457 6.33e-104 318
Msa0937340 AT3G47500.1 38.521 514 224 19 1 492 3 446 2.77e-82 262
Msa0937340 AT5G62430.1 37.150 393 120 17 105 492 26 296 2.34e-54 184
Msa0937340 AT1G69570.1 34.409 372 138 14 128 493 125 396 1.28e-45 164
Msa0937340 AT1G26790.1 57.463 134 48 3 80 209 59 187 9.58e-38 142
Msa0937340 AT1G29160.1 86.667 60 8 0 129 188 56 115 3.71e-35 129
Msa0937340 AT2G34140.1 83.333 60 10 0 129 188 52 111 1.86e-33 125
Msa0937340 AT5G60850.1 61.429 70 27 0 123 192 39 108 3.96e-26 108
Msa0937340 AT1G51700.1 72.881 59 15 1 135 192 33 91 1.83e-25 103
Msa0937340 AT3G55370.1 60.870 69 27 0 131 199 72 140 3.11e-25 106
Msa0937340 AT3G55370.2 60.870 69 27 0 131 199 72 140 3.36e-25 107
Msa0937340 AT5G60200.1 55.172 87 37 2 131 215 51 137 4.67e-25 104
Msa0937340 AT3G55370.3 60.870 69 27 0 131 199 117 185 5.23e-25 106
Msa0937340 AT3G21270.1 77.358 53 12 0 135 187 29 81 1.16e-24 102
Msa0937340 AT2G28810.2 65.574 61 21 0 126 186 68 128 1.35e-24 104
Msa0937340 AT1G07640.1 61.111 72 25 1 116 187 5 73 1.42e-24 103
Msa0937340 AT3G45610.1 56.944 72 30 1 131 201 36 107 1.48e-24 102
Msa0937340 AT2G28810.1 65.574 61 21 0 126 186 85 145 2.21e-24 104
Msa0937340 AT3G61850.2 63.492 63 23 0 130 192 57 119 2.25e-24 103
Msa0937340 AT3G61850.3 63.492 63 23 0 130 192 57 119 2.25e-24 103
Msa0937340 AT3G61850.1 63.492 63 23 0 130 192 69 131 2.27e-24 103
Msa0937340 AT3G50410.1 73.585 53 14 0 135 187 30 82 3.16e-24 102
Msa0937340 AT1G07640.2 75.472 53 13 0 135 187 77 129 3.20e-24 103
Msa0937340 AT3G61850.5 63.492 63 23 0 130 192 57 119 3.32e-24 103
Msa0937340 AT5G65590.1 73.214 56 15 0 135 190 41 96 3.73e-24 103
Msa0937340 AT3G61850.4 63.492 63 23 0 130 192 69 131 3.75e-24 103
Msa0937340 AT2G37590.1 67.241 58 19 0 131 188 85 142 3.93e-24 103
Msa0937340 AT1G07640.3 75.472 53 13 0 135 187 85 137 4.03e-24 103
Msa0937340 AT4G38000.1 52.874 87 39 2 134 219 40 125 4.44e-24 101
Msa0937340 AT4G24060.1 68.421 57 18 0 132 188 50 106 6.74e-24 103
Msa0937340 AT1G64620.1 71.154 52 15 0 132 183 46 97 3.45e-23 101
Msa0937340 AT1G28310.1 72.222 54 15 0 135 188 27 80 4.32e-23 100
Msa0937340 AT5G02460.1 67.241 58 19 0 131 188 91 148 5.91e-23 101
Msa0937340 AT2G28510.1 69.643 56 17 0 137 192 50 105 6.54e-23 99.0
Msa0937340 AT1G28310.2 72.222 54 15 0 135 188 51 104 6.90e-23 100
Msa0937340 AT5G66940.1 67.925 53 17 0 135 187 32 84 2.03e-22 96.3
Msa0937340 AT4G00940.1 66.102 59 20 0 130 188 63 121 2.69e-22 97.4
Msa0937340 AT4G00940.3 66.102 59 20 0 130 188 63 121 2.69e-22 97.4
Msa0937340 AT4G00940.2 66.102 59 20 0 130 188 63 121 2.69e-22 97.4
Msa0937340 AT1G47655.1 73.469 49 13 0 135 183 29 77 3.48e-22 95.1
Msa0937340 AT2G46590.1 67.925 53 17 0 130 182 63 115 6.59e-22 97.4
Msa0937340 AT2G46590.2 67.925 53 17 0 130 182 75 127 6.75e-22 97.8
Msa0937340 AT3G52440.1 69.231 52 16 0 137 188 27 78 7.22e-22 95.1
Msa0937340 AT3G52440.2 69.231 52 16 0 137 188 46 97 9.57e-22 95.1
Msa0937340 AT1G21340.1 66.667 54 18 0 137 190 40 93 1.16e-21 94.7
Msa0937340 AT4G21050.1 57.353 68 29 0 121 188 10 77 4.66e-21 91.7
Msa0937340 AT5G62940.1 69.388 49 15 0 137 185 75 123 7.25e-20 91.7
Msa0937340 AT4G21040.1 49.412 85 36 2 137 221 27 104 8.87e-19 85.9
Msa0937340 AT4G21080.1 53.333 75 31 2 137 208 27 100 5.67e-18 84.0
Msa0937340 AT4G21030.1 56.818 44 19 0 137 180 23 66 7.09e-11 62.0

Find 146 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTGCATTCGCTTTA+AGG 0.100087 6_3:+8585660 Msa0937340:three_prime_UTR
TCTATCCTCCACCGGCTTAT+TGG 0.171714 6_3:+8584952 Msa0937340:CDS
CTATCCTCCACCGGCTTATT+GGG 0.204943 6_3:+8584953 Msa0937340:CDS
ATTGAAAACTTCAAAGATTA+TGG 0.206877 6_3:+8584230 Msa0937340:CDS
GGTGGGAAGCTTTGACAATT+TGG 0.253300 6_3:-8584816 None:intergenic
CTGTTTCGGGTACAGTTATT+TGG 0.254197 6_3:-8584488 None:intergenic
GTTATTGTAGTAGCAGAATT+TGG 0.264718 6_3:-8584337 None:intergenic
GCAAGAAATGCCAGAGATAC+TGG 0.298374 6_3:+8584388 Msa0937340:CDS
CTTGCCGCCGCCGCCACATA+AGG 0.299078 6_3:-8585718 None:intergenic
GAGTTAACGGCTGCACTATT+TGG 0.304692 6_3:-8585029 None:intergenic
AGAATTCTGAACAGCTGTTT+CGG 0.322405 6_3:-8584502 None:intergenic
GAATTCTGAACAGCTGTTTC+GGG 0.323421 6_3:-8584501 None:intergenic
GCTGGATTGGCCTGCATGGC+AGG 0.325373 6_3:-8585326 None:intergenic
TTACCTAAGGTTGGCGAGTT+AGG 0.325633 6_3:-8585056 None:intergenic
GGTGTCCATGCTATTACAAC+GGG 0.366283 6_3:-8584316 None:intergenic
TTCATAGCTGCTGTGTCAAT+TGG 0.384604 6_3:-8585437 None:intergenic
TGCTGCTGGATTGGCCTGCA+TGG 0.384791 6_3:-8585330 None:intergenic
GCATTGAACCTTGCTGATAA+AGG 0.387819 6_3:+8584627 Msa0937340:CDS
GGAGCACCAGCTTCATCTTC+TGG 0.388137 6_3:+8582676 Msa0937340:CDS
CCTAGACATTGCTGCTGGAT+TGG 0.394113 6_3:-8585339 None:intergenic
ACATGAATCCGTAGACCTTC+CGG 0.402858 6_3:-8584684 None:intergenic
TGATGTGTCCGAAGATTTGA+TGG 0.404612 6_3:-8584742 None:intergenic
ATGGCACAGTCTTTACATTC+AGG 0.405324 6_3:+8584571 Msa0937340:CDS
ACCTCAATATTGACAACTCT+CGG 0.408584 6_3:+8585209 Msa0937340:CDS
ATATACATCGACAATCTTGC+AGG 0.412854 6_3:-8585839 None:intergenic
CAACCTTAGGTAAGCATTCA+AGG 0.416860 6_3:+8585066 Msa0937340:CDS
CCCCGGCAGTCCAGTATCTC+TGG 0.422379 6_3:-8584398 None:intergenic
GGCAAAAGCCAAGGGGCACC+AGG 0.424018 6_3:-8584855 None:intergenic
TTCCCTTGAATGCTTACCTA+AGG 0.425560 6_3:-8585069 None:intergenic
AAGAAAGCATTCTAAAAGAA+AGG 0.427452 6_3:-8585758 None:intergenic
CGAGTTAGGACCGGAGTTAA+CGG 0.433388 6_3:-8585042 None:intergenic
TTCATTGCTCTTTGAACCAA+AGG 0.434809 6_3:-8585282 None:intergenic
CCCGAGAGTTGTCAATATTG+AGG 0.441514 6_3:-8585210 None:intergenic
CACCCCTTATGTGGCGGCGG+CGG 0.444998 6_3:+8585714 Msa0937340:three_prime_UTR
AGACACAAACTCAAGATTAG+TGG 0.448603 6_3:+8584167 Msa0937340:CDS
ATAAAGAAGAAAAGTCCCTT+TGG 0.450455 6_3:+8585141 Msa0937340:CDS
TTCTATCTCTTCTTCATCCA+TGG 0.451574 6_3:-8582740 None:intergenic
TGGGAAGACAATTCCGGTAC+CGG 0.459321 6_3:+8582624 Msa0937340:CDS
TCCGGTAGAGTCACCGGATC+CGG 0.459421 6_3:-8582656 None:intergenic
GCCAGAGATACTGGACTGCC+GGG 0.460238 6_3:+8584397 Msa0937340:CDS
CCGGAGATCTCTGCCGGATC+CGG 0.461337 6_3:+8582643 Msa0937340:CDS
TGCCGTGGAATCCATCTCAA+TGG 0.462888 6_3:+8584874 Msa0937340:CDS
CTCAAACCAACCGACTCAAC+AGG 0.464405 6_3:+8585101 Msa0937340:CDS
TAAAGAAGAAAAGTCCCTTT+GGG 0.467980 6_3:+8585142 Msa0937340:CDS
CCATGGATTGTTCCACGCAC+CGG 0.474496 6_3:-8584988 None:intergenic
GGTCCTAACTCGCCAACCTT+AGG 0.475475 6_3:+8585053 Msa0937340:CDS
GCAAAACTCACCTGCCATGC+AGG 0.477299 6_3:+8585316 Msa0937340:CDS
TCAGAACCTGTTGAGTCGGT+TGG 0.477638 6_3:-8585107 None:intergenic
TGCCAGAGATACTGGACTGC+CGG 0.478106 6_3:+8584396 Msa0937340:CDS
AATGGAAGATATTGAGAAGA+TGG 0.482463 6_3:+8585637 Msa0937340:three_prime_UTR
TGATCATTCCATCAAATCTT+CGG 0.483222 6_3:+8584734 Msa0937340:CDS
CTTGAATGCTTACCTAAGGT+TGG 0.484913 6_3:-8585065 None:intergenic
CACATTTCTCATGGCTCCCC+CGG 0.486523 6_3:-8584415 None:intergenic
GAAGGATGATGGACTCCGTT+TGG 0.487346 6_3:-8584537 None:intergenic
AACTTGTTCAAGAGAACTGC+TGG 0.493603 6_3:-8584790 None:intergenic
TTCCTACGACCGGCACCTAC+AGG 0.494832 6_3:-8584438 None:intergenic
AGAAAGCATTCTAAAAGAAA+GGG 0.495661 6_3:-8585757 None:intergenic
TACAGTTCAGTGAAGGATGA+TGG 0.503313 6_3:-8584548 None:intergenic
TTCGTCAGAACCTGTTGAGT+CGG 0.506659 6_3:-8585111 None:intergenic
TCAAAACCATGGTTCTTCCA+TGG 0.507388 6_3:+8582723 Msa0937340:CDS
GCCGGATCCGGTGACTCTAC+CGG 0.509037 6_3:+8582655 Msa0937340:CDS
TCTCAATCCGACTCGCCAAA+CGG 0.513729 6_3:+8584522 Msa0937340:CDS
TCTGGTGATGCTGTTGATGA+TGG 0.515932 6_3:+8582694 Msa0937340:CDS
CATGGATTGTTCCACGCACC+GGG 0.516259 6_3:-8584987 None:intergenic
TTATAAGCTACATAATTATG+AGG 0.516746 6_3:-8585381 None:intergenic
ATGGACTCCGTTTGGCGAGT+CGG 0.520233 6_3:-8584529 None:intergenic
TCATTAGACCGGAAGGTCTA+CGG 0.522416 6_3:+8584676 Msa0937340:CDS
CCAATCCAGCAGCAATGTCT+AGG 0.524624 6_3:+8585339 Msa0937340:CDS
GAGTAGTTTCACCCCTTATG+TGG 0.525007 6_3:+8585705 Msa0937340:three_prime_UTR
TCTCACCCAATCATCAGAAA+AGG 0.525594 6_3:+8584134 Msa0937340:CDS
CATCCTTCACTGAACTGTAA+TGG 0.526917 6_3:+8584552 Msa0937340:CDS
AGTAAGGCGGACGCGATTCG+TGG 0.530810 6_3:+8585242 Msa0937340:CDS
CCGGCAGAGATCTCCGGTAC+CGG 0.531399 6_3:-8582637 None:intergenic
ATTGACCTAGACATTGCTGC+TGG 0.532105 6_3:-8585344 None:intergenic
AGAAGATGAAGCTGGTGCTC+CGG 0.532773 6_3:-8582674 None:intergenic
GCTGCACTATTTGGTGAAGA+AGG 0.534001 6_3:-8585020 None:intergenic
TGCCGCCGCCGCCACATAAG+GGG 0.534121 6_3:-8585716 None:intergenic
ACTTGAGAGCTCCATTGAGA+TGG 0.535364 6_3:-8584885 None:intergenic
GTGGCATGGCAAATCCTTGT+GGG 0.536245 6_3:-8584929 None:intergenic
TGGTGCTCCGGTAGAGTCAC+CGG 0.536837 6_3:-8582662 None:intergenic
TGCGTGGAACAATCCATGGC+TGG 0.539604 6_3:+8584992 Msa0937340:CDS
CCTCAATATTGACAACTCTC+GGG 0.541239 6_3:+8585210 Msa0937340:CDS
GTAAGGCGGACGCGATTCGT+GGG 0.543719 6_3:+8585243 Msa0937340:CDS
CAAGGGGCACCAGGGTAGTA+CGG 0.543849 6_3:-8584846 None:intergenic
CTTATGTGGCGGCGGCGGCA+AGG 0.550827 6_3:+8585719 Msa0937340:three_prime_UTR
CTCCATTGAGATGGATTCCA+CGG 0.551011 6_3:-8584876 None:intergenic
TGAATCGACCAAATGTAAGA+AGG 0.555366 6_3:+8584098 Msa0937340:CDS
TATTAACTCCTTTATCAGCA+AGG 0.557069 6_3:-8584635 None:intergenic
TATCCTCCACCGGCTTATTG+GGG 0.557577 6_3:+8584954 Msa0937340:CDS
ATTCTTGTTCTTCCTACGAC+CGG 0.559859 6_3:-8584448 None:intergenic
CTTCATCCATGGAAGAACCA+TGG 0.559893 6_3:-8582729 None:intergenic
ATGCTAAAACCCCAATAAGC+CGG 0.561380 6_3:-8584963 None:intergenic
TGGTGTCCATGCTATTACAA+CGG 0.562401 6_3:-8584317 None:intergenic
ATCATGGAAGCAAAAGACCC+TGG 0.564274 6_3:+8582589 Msa0937340:exon
GGATTCCACGGCAAAAGCCA+AGG 0.568149 6_3:-8584864 None:intergenic
TGCCTGTAGGTGCCGGTCGT+AGG 0.569339 6_3:+8584436 Msa0937340:CDS
TTTGCTCGTCCTCAGTGGAG+GGG 0.569766 6_3:-8584203 None:intergenic
CGGATTCATGTACCCTATGT+TGG 0.570976 6_3:+8584696 Msa0937340:CDS
GTGTCCCCGTTGTAATAGCA+TGG 0.578322 6_3:+8584311 Msa0937340:CDS
AAACCCCAATAAGCCGGTGG+AGG 0.580141 6_3:-8584957 None:intergenic
ACCTACAGGCACATTTCTCA+TGG 0.581950 6_3:-8584424 None:intergenic
GGGTAGTACGGAACTTGCGG+TGG 0.584630 6_3:-8584834 None:intergenic
TTTCACCCCTTATGTGGCGG+CGG 0.584663 6_3:+8585711 Msa0937340:three_prime_UTR
AACGGAATCATTAGACCGGA+AGG 0.586342 6_3:+8584669 Msa0937340:CDS
TAAGGTTGGCGAGTTAGGAC+CGG 0.591433 6_3:-8585051 None:intergenic
CCGCAAGTTCCGTACTACCC+TGG 0.592010 6_3:+8584837 Msa0937340:CDS
CCGGTGCGTGGAACAATCCA+TGG 0.594068 6_3:+8584988 Msa0937340:CDS
AGAAATGTGCCTGTAGGTGC+CGG 0.595484 6_3:+8584429 Msa0937340:CDS
ACGTTGAGGATTGATGACTT+AGG 0.598062 6_3:+8585173 Msa0937340:CDS
GCATCACCAGAAGATGAAGC+TGG 0.603079 6_3:-8582682 None:intergenic
TCATGGAAGCAAAAGACCCT+GGG 0.603420 6_3:+8582590 Msa0937340:exon
CCAGGGTAGTACGGAACTTG+CGG 0.603954 6_3:-8584837 None:intergenic
TACAAACTGTAAGAATACAT+TGG 0.604770 6_3:+8585575 Msa0937340:three_prime_UTR
TAGTTTCACCCCTTATGTGG+CGG 0.605508 6_3:+8585708 Msa0937340:three_prime_UTR
GATTCCACGGCAAAAGCCAA+GGG 0.605584 6_3:-8584863 None:intergenic
AGAAGAGATAGAAATTGATG+AGG 0.608917 6_3:+8582750 Msa0937340:CDS
AATAGTGCAGCCGTTAACTC+CGG 0.609641 6_3:+8585032 Msa0937340:CDS
AACCTTAGGTAAGCATTCAA+GGG 0.609767 6_3:+8585067 Msa0937340:CDS
GAAGAAGGTTGTGCCAGCCA+TGG 0.610893 6_3:-8585005 None:intergenic
ATTTGAGAAAATGAAAGTGT+TGG 0.612177 6_3:+8585501 Msa0937340:three_prime_UTR
TTTGGGTTCCGAAAACGTTG+AGG 0.613827 6_3:+8585159 Msa0937340:CDS
CCAGAGATACTGGACTGCCG+GGG 0.615553 6_3:+8584398 Msa0937340:CDS
ATGCTATTACAACGGGGACA+CGG 0.617301 6_3:-8584309 None:intergenic
TAAGGCGGACGCGATTCGTG+GGG 0.619512 6_3:+8585244 Msa0937340:CDS
TAAGCTTATGTGACATAGTG+AGG 0.620731 6_3:+8585799 Msa0937340:three_prime_UTR
CATGCCACTCTATCCTCCAC+CGG 0.623143 6_3:+8584944 Msa0937340:CDS
TAAGCCGGTGGAGGATAGAG+TGG 0.624963 6_3:-8584948 None:intergenic
CAGAGATACTGGACTGCCGG+GGG 0.627532 6_3:+8584399 Msa0937340:CDS
GCAAAAGCCAAGGGGCACCA+GGG 0.629020 6_3:-8584854 None:intergenic
TTCTTGAATTCAGGACACAA+TGG 0.631423 6_3:+8584071 Msa0937340:intron
AGTGGCATGGCAAATCCTTG+TGG 0.633181 6_3:-8584930 None:intergenic
AGATTGCATTGATTCACACA+AGG 0.639343 6_3:-8584604 None:intergenic
GACTCAACAGGTTCTGACGA+AGG 0.640024 6_3:+8585113 Msa0937340:CDS
AAGGCGGACGCGATTCGTGG+GGG 0.643400 6_3:+8585245 Msa0937340:CDS
GATGGTATCATTCAAAACCA+TGG 0.655530 6_3:+8582712 Msa0937340:CDS
CGGTGGAGGATAGAGTGGCA+TGG 0.658087 6_3:-8584943 None:intergenic
GTGCCATTACAGTTCAGTGA+AGG 0.658325 6_3:-8584555 None:intergenic
GATTGCATTGATTCACACAA+GGG 0.666221 6_3:-8584603 None:intergenic
CTATGAAACAGACACAACAT+TGG 0.667427 6_3:+8585453 Msa0937340:three_prime_UTR
ATCAATTAACCCCTCCACTG+AGG 0.675714 6_3:+8584194 Msa0937340:CDS
GGTAGTACGGAACTTGCGGT+GGG 0.677836 6_3:-8584833 None:intergenic
CTAAAACCCCAATAAGCCGG+TGG 0.682119 6_3:-8584960 None:intergenic
GCCATGAGAAATGTGCCTGT+AGG 0.725661 6_3:+8584423 Msa0937340:CDS
ATTCCACGGCAAAAGCCAAG+GGG 0.744240 6_3:-8584862 None:intergenic
GTGTCCATGCTATTACAACG+GGG 0.773351 6_3:-8584315 None:intergenic
GACATGCGTTACAAGCACAG+TGG 0.786778 6_3:+8585529 Msa0937340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTTGTT+TGG + chr6_3:8583156-8583175 Msa0937340:intron 10.0%
!! AAAAAAAAAACACACATAAA+AGG - chr6_3:8582894-8582913 None:intergenic 15.0%
!! ATAAAGAAAAAACAGATTTA+AGG + chr6_3:8583598-8583617 Msa0937340:intron 15.0%
!! TTATATGTGATGAAAAAAGT+GGG - chr6_3:8582508-8582527 None:intergenic 20.0%
!! TTTATATGTGATGAAAAAAG+TGG - chr6_3:8582509-8582528 None:intergenic 20.0%
!! AAAAAGAAACAGAAAAATCA+TGG + chr6_3:8582573-8582592 Msa0937340:exon 20.0%
!!! ATTTTCACATTTGAAATCAA+GGG - chr6_3:8582805-8582824 None:intergenic 20.0%
!!! TATTTTCACATTTGAAATCA+AGG - chr6_3:8582806-8582825 None:intergenic 20.0%
!! TCAAATGTGAAAATATTTAG+TGG + chr6_3:8582811-8582830 Msa0937340:intron 20.0%
!! CAAATGTGAAAATATTTAGT+GGG + chr6_3:8582812-8582831 Msa0937340:intron 20.0%
!!! TGTGTTTTTTTTTTGTTGAA+GGG + chr6_3:8582900-8582919 Msa0937340:intron 20.0%
!!! TTCAATTTTGGAATTGATTT+TGG + chr6_3:8582978-8582997 Msa0937340:intron 20.0%
!! ATTGAAAACTTCAAAGATTA+TGG + chr6_3:8584230-8584249 Msa0937340:CDS 20.0%
!! TTATAAGCTACATAATTATG+AGG - chr6_3:8585384-8585403 None:intergenic 20.0%
!!! TCATTTTCTCAAATCATTAA+TGG - chr6_3:8585495-8585514 None:intergenic 20.0%
! TATATGTGATGAAAAAAGTG+GGG - chr6_3:8582507-8582526 None:intergenic 25.0%
!!! GTGTGTTTTTTTTTTGTTGA+AGG + chr6_3:8582899-8582918 Msa0937340:intron 25.0%
!!! GTTTGGATTTTGTGTTTTTT+TGG + chr6_3:8582934-8582953 Msa0937340:intron 25.0%
!!! TTTTTTGGATCTATGTTGTT+TGG + chr6_3:8582949-8582968 Msa0937340:intron 25.0%
!!! GTTTGGTTTTGTTTCAATTT+TGG + chr6_3:8582966-8582985 Msa0937340:intron 25.0%
!!! GGAATTGATTTTGGTTTTTA+AGG + chr6_3:8582987-8583006 Msa0937340:intron 25.0%
! GCTTAAGCTTAACATTAAAT+TGG + chr6_3:8583060-8583079 Msa0937340:intron 25.0%
! CTAGAACTAAATCAAAACTA+GGG - chr6_3:8583187-8583206 None:intergenic 25.0%
! TCATAATAACGAATCTAAGA+TGG - chr6_3:8583245-8583264 None:intergenic 25.0%
!!! ATCTGATTCAAAGTTTTAAC+CGG + chr6_3:8583332-8583351 Msa0937340:intron 25.0%
! TTCAGAATCAGATATAGAAA+AGG - chr6_3:8583506-8583525 None:intergenic 25.0%
! AAAAACAGATTTAAGGAGTA+AGG + chr6_3:8583605-8583624 Msa0937340:intron 25.0%
!! ATCTTTTTCCTTCTTACATT+TGG - chr6_3:8584109-8584128 None:intergenic 25.0%
!! ATTTGAGAAAATGAAAGTGT+TGG + chr6_3:8585501-8585520 Msa0937340:three_prime_UTR 25.0%
! TACAAACTGTAAGAATACAT+TGG + chr6_3:8585575-8585594 Msa0937340:three_prime_UTR 25.0%
!!! CATTGGTTCATTTTTGTTTT+TGG + chr6_3:8585592-8585611 Msa0937340:three_prime_UTR 25.0%
!!! AGTTAGTTTTTGTTGATCAA+TGG + chr6_3:8585619-8585638 Msa0937340:three_prime_UTR 25.0%
!!! AGAAAGCATTCTAAAAGAAA+GGG - chr6_3:8585760-8585779 None:intergenic 25.0%
!!! AAGAAAGCATTCTAAAAGAA+AGG - chr6_3:8585761-8585780 None:intergenic 25.0%
AGAAGAGATAGAAATTGATG+AGG + chr6_3:8582750-8582769 Msa0937340:CDS 30.0%
! TGTGAAAATATTTAGTGGGT+TGG + chr6_3:8582816-8582835 Msa0937340:intron 30.0%
GAAGGGTTTAGTATTTAGTT+TGG + chr6_3:8582917-8582936 Msa0937340:intron 30.0%
GCTAGAACTAAATCAAAACT+AGG - chr6_3:8583188-8583207 None:intergenic 30.0%
ACGATATCTATACTGAAACT+TGG - chr6_3:8583280-8583299 None:intergenic 30.0%
!! GTCAAACAAAGTTGATGTAT+TGG - chr6_3:8583387-8583406 None:intergenic 30.0%
ATAAACTCTATTTACTCCTC+TGG - chr6_3:8583409-8583428 None:intergenic 30.0%
GTTAAACACAATCAATACTC+TGG - chr6_3:8583460-8583479 None:intergenic 30.0%
! ATCTTTCTCTATTTAGCTTC+TGG + chr6_3:8583552-8583571 Msa0937340:intron 30.0%
!!! TTTTGTCATACTTTCTGGTT+TGG + chr6_3:8583654-8583673 Msa0937340:intron 30.0%
! TGACTATAGACAAAAGTACA+AGG - chr6_3:8583690-8583709 None:intergenic 30.0%
CATAAACACTTGAGACTATT+CGG + chr6_3:8583865-8583884 Msa0937340:intron 30.0%
! TCAAGAGTTTTCTTGAATTC+AGG + chr6_3:8584062-8584081 Msa0937340:intron 30.0%
!!! TATTTTGTCTGGCTTTTTCA+GGG - chr6_3:8584286-8584305 None:intergenic 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr6_3:8584340-8584359 None:intergenic 30.0%
TATTAACTCCTTTATCAGCA+AGG - chr6_3:8584638-8584657 None:intergenic 30.0%
GTTAATATTTCCGCGAAAAA+CGG + chr6_3:8584651-8584670 Msa0937340:CDS 30.0%
TGATCATTCCATCAAATCTT+CGG + chr6_3:8584734-8584753 Msa0937340:CDS 30.0%
ATAAAGAAGAAAAGTCCCTT+TGG + chr6_3:8585141-8585160 Msa0937340:CDS 30.0%
TAAAGAAGAAAAGTCCCTTT+GGG + chr6_3:8585142-8585161 Msa0937340:CDS 30.0%
TCTCGGGATTAAAAATAGTA+AGG + chr6_3:8585226-8585245 Msa0937340:CDS 30.0%
AATGGAAGATATTGAGAAGA+TGG + chr6_3:8585637-8585656 Msa0937340:three_prime_UTR 30.0%
GATGGTATCATTCAAAACCA+TGG + chr6_3:8582712-8582731 Msa0937340:CDS 35.0%
TTCTATCTCTTCTTCATCCA+TGG - chr6_3:8582743-8582762 None:intergenic 35.0%
! AGCTTCTGGATTTTGTATGT+TGG + chr6_3:8583566-8583585 Msa0937340:intron 35.0%
! GCTCATTTTGTCATACTTTC+TGG + chr6_3:8583649-8583668 Msa0937340:intron 35.0%
TTGTCTATAGTCAGCTAACA+TGG + chr6_3:8583697-8583716 Msa0937340:intron 35.0%
!! GCTATAGTACTGATTATCTG+TGG + chr6_3:8583726-8583745 Msa0937340:intron 35.0%
AATTAGCGCTTAATGCGTAA+AGG - chr6_3:8584000-8584019 None:intergenic 35.0%
TTCTTGAATTCAGGACACAA+TGG + chr6_3:8584071-8584090 Msa0937340:intron 35.0%
TGAATCGACCAAATGTAAGA+AGG + chr6_3:8584098-8584117 Msa0937340:CDS 35.0%
! AGTGACCTTTTCTGATGATT+GGG - chr6_3:8584142-8584161 None:intergenic 35.0%
AGACACAAACTCAAGATTAG+TGG + chr6_3:8584167-8584186 Msa0937340:CDS 35.0%
!!! GTATTTTGTCTGGCTTTTTC+AGG - chr6_3:8584287-8584306 None:intergenic 35.0%
TCTGGCATTTCTTGCAAAAA+TGG - chr6_3:8584383-8584402 None:intergenic 35.0%
AGAATTCTGAACAGCTGTTT+CGG - chr6_3:8584505-8584524 None:intergenic 35.0%
!! GATTGCATTGATTCACACAA+GGG - chr6_3:8584606-8584625 None:intergenic 35.0%
!! AGATTGCATTGATTCACACA+AGG - chr6_3:8584607-8584626 None:intergenic 35.0%
!! TCTAATGATTCCGTTTTTCG+CGG - chr6_3:8584664-8584683 None:intergenic 35.0%
GAAAAACGGAATCATTAGAC+CGG + chr6_3:8584665-8584684 Msa0937340:CDS 35.0%
! CTCTTTTCTTCACCAACATA+GGG - chr6_3:8584711-8584730 None:intergenic 35.0%
! ACTCTTTTCTTCACCAACAT+AGG - chr6_3:8584712-8584731 None:intergenic 35.0%
AACCTTAGGTAAGCATTCAA+GGG + chr6_3:8585067-8585086 Msa0937340:CDS 35.0%
! TCATCAATCCTCAACGTTTT+CGG - chr6_3:8585170-8585189 None:intergenic 35.0%
ACCTCAATATTGACAACTCT+CGG + chr6_3:8585209-8585228 Msa0937340:CDS 35.0%
CGGGATTAAAAATAGTAAGG+CGG + chr6_3:8585229-8585248 Msa0937340:CDS 35.0%
TTCATTGCTCTTTGAACCAA+AGG - chr6_3:8585285-8585304 None:intergenic 35.0%
CTATGAAACAGACACAACAT+TGG + chr6_3:8585453-8585472 Msa0937340:three_prime_UTR 35.0%
TTCTTTCTGCATTCGCTTTA+AGG + chr6_3:8585660-8585679 Msa0937340:three_prime_UTR 35.0%
TAAGCTTATGTGACATAGTG+AGG + chr6_3:8585799-8585818 Msa0937340:three_prime_UTR 35.0%
ATATACATCGACAATCTTGC+AGG - chr6_3:8585842-8585861 None:intergenic 35.0%
!! GCTTTTTGGGAAGACAATTC+CGG + chr6_3:8582618-8582637 Msa0937340:CDS 40.0%
TCAAAACCATGGTTCTTCCA+TGG + chr6_3:8582723-8582742 Msa0937340:CDS 40.0%
!!! AGTGGGTTGGTGTTAGATTT+TGG + chr6_3:8582829-8582848 Msa0937340:intron 40.0%
GATGCTGTTGTAGTTTCTGA+TGG + chr6_3:8583038-8583057 Msa0937340:intron 40.0%
! CATCAACTTTGTTTGACCAG+AGG + chr6_3:8583390-8583409 Msa0937340:intron 40.0%
TCTCACCCAATCATCAGAAA+AGG + chr6_3:8584134-8584153 Msa0937340:CDS 40.0%
! CAGTGACCTTTTCTGATGAT+TGG - chr6_3:8584143-8584162 None:intergenic 40.0%
TGGTGTCCATGCTATTACAA+CGG - chr6_3:8584320-8584339 None:intergenic 40.0%
CATTTCTTGCAAAAATGGCG+AGG - chr6_3:8584378-8584397 None:intergenic 40.0%
ATTCTTGTTCTTCCTACGAC+CGG - chr6_3:8584451-8584470 None:intergenic 40.0%
! CTGTTTCGGGTACAGTTATT+TGG - chr6_3:8584491-8584510 None:intergenic 40.0%
! GAATTCTGAACAGCTGTTTC+GGG - chr6_3:8584504-8584523 None:intergenic 40.0%
TACAGTTCAGTGAAGGATGA+TGG - chr6_3:8584551-8584570 None:intergenic 40.0%
CATCCTTCACTGAACTGTAA+TGG + chr6_3:8584552-8584571 Msa0937340:CDS 40.0%
ATGGCACAGTCTTTACATTC+AGG + chr6_3:8584571-8584590 Msa0937340:CDS 40.0%
GCATTGAACCTTGCTGATAA+AGG + chr6_3:8584627-8584646 Msa0937340:CDS 40.0%
TGATGTGTCCGAAGATTTGA+TGG - chr6_3:8584745-8584764 None:intergenic 40.0%
! AACTTGTTCAAGAGAACTGC+TGG - chr6_3:8584793-8584812 None:intergenic 40.0%
AATCCTTGTGGGAAAAAAGC+AGG - chr6_3:8584921-8584940 None:intergenic 40.0%
ATGCTAAAACCCCAATAAGC+CGG - chr6_3:8584966-8584985 None:intergenic 40.0%
CTTGAATGCTTACCTAAGGT+TGG - chr6_3:8585068-8585087 None:intergenic 40.0%
CAACCTTAGGTAAGCATTCA+AGG + chr6_3:8585066-8585085 Msa0937340:CDS 40.0%
TTCCCTTGAATGCTTACCTA+AGG - chr6_3:8585072-8585091 None:intergenic 40.0%
! ACGTTGAGGATTGATGACTT+AGG + chr6_3:8585173-8585192 Msa0937340:CDS 40.0%
CCTCAATATTGACAACTCTC+GGG + chr6_3:8585210-8585229 Msa0937340:CDS 40.0%
TTCATAGCTGCTGTGTCAAT+TGG - chr6_3:8585440-8585459 None:intergenic 40.0%
ATCATGGAAGCAAAAGACCC+TGG + chr6_3:8582589-8582608 Msa0937340:exon 45.0%
TCATGGAAGCAAAAGACCCT+GGG + chr6_3:8582590-8582609 Msa0937340:exon 45.0%
! ACCCTGGGATCAAGCTTTTT+GGG + chr6_3:8582605-8582624 Msa0937340:CDS 45.0%
TCCCAAAAAGCTTGATCCCA+GGG - chr6_3:8582609-8582628 None:intergenic 45.0%
TTCCCAAAAAGCTTGATCCC+AGG - chr6_3:8582610-8582629 None:intergenic 45.0%
! TCTGGTGATGCTGTTGATGA+TGG + chr6_3:8582694-8582713 Msa0937340:CDS 45.0%
CTTCATCCATGGAAGAACCA+TGG - chr6_3:8582732-8582751 None:intergenic 45.0%
!! TAACCGGAAGTTGATGTGTC+TGG + chr6_3:8583348-8583367 Msa0937340:intron 45.0%
GAACCAGACACATCAACTTC+CGG - chr6_3:8583354-8583373 None:intergenic 45.0%
ATCAATTAACCCCTCCACTG+AGG + chr6_3:8584194-8584213 Msa0937340:CDS 45.0%
! TGTATTTTGCTCGTCCTCAG+TGG - chr6_3:8584211-8584230 None:intergenic 45.0%
ATGCTATTACAACGGGGACA+CGG - chr6_3:8584312-8584331 None:intergenic 45.0%
GTGTCCATGCTATTACAACG+GGG - chr6_3:8584318-8584337 None:intergenic 45.0%
GGTGTCCATGCTATTACAAC+GGG - chr6_3:8584319-8584338 None:intergenic 45.0%
GCAAGAAATGCCAGAGATAC+TGG + chr6_3:8584388-8584407 Msa0937340:CDS 45.0%
ACCTACAGGCACATTTCTCA+TGG - chr6_3:8584427-8584446 None:intergenic 45.0%
! GTGCCATTACAGTTCAGTGA+AGG - chr6_3:8584558-8584577 None:intergenic 45.0%
AACGGAATCATTAGACCGGA+AGG + chr6_3:8584669-8584688 Msa0937340:CDS 45.0%
TCATTAGACCGGAAGGTCTA+CGG + chr6_3:8584676-8584695 Msa0937340:CDS 45.0%
ACATGAATCCGTAGACCTTC+CGG - chr6_3:8584687-8584706 None:intergenic 45.0%
CGGATTCATGTACCCTATGT+TGG + chr6_3:8584696-8584715 Msa0937340:CDS 45.0%
! GGTGGGAAGCTTTGACAATT+TGG - chr6_3:8584819-8584838 None:intergenic 45.0%
! CTCCATTGAGATGGATTCCA+CGG - chr6_3:8584879-8584898 None:intergenic 45.0%
ACTTGAGAGCTCCATTGAGA+TGG - chr6_3:8584888-8584907 None:intergenic 45.0%
!! TATTGGGGTTTTAGCATGCC+CGG + chr6_3:8584969-8584988 Msa0937340:CDS 45.0%
! GCTGCACTATTTGGTGAAGA+AGG - chr6_3:8585023-8585042 None:intergenic 45.0%
GAGTTAACGGCTGCACTATT+TGG - chr6_3:8585032-8585051 None:intergenic 45.0%
AATAGTGCAGCCGTTAACTC+CGG + chr6_3:8585032-8585051 Msa0937340:CDS 45.0%
TTACCTAAGGTTGGCGAGTT+AGG - chr6_3:8585059-8585078 None:intergenic 45.0%
TTCGTCAGAACCTGTTGAGT+CGG - chr6_3:8585114-8585133 None:intergenic 45.0%
! CAACGTTTTCGGAACCCAAA+GGG - chr6_3:8585159-8585178 None:intergenic 45.0%
! TCAACGTTTTCGGAACCCAA+AGG - chr6_3:8585160-8585179 None:intergenic 45.0%
! TTTGGGTTCCGAAAACGTTG+AGG + chr6_3:8585159-8585178 Msa0937340:CDS 45.0%
CCCGAGAGTTGTCAATATTG+AGG - chr6_3:8585213-8585232 None:intergenic 45.0%
! GGAGGACTTTTCAAAGCCTT+TGG + chr6_3:8585266-8585285 Msa0937340:CDS 45.0%
ATTGACCTAGACATTGCTGC+TGG - chr6_3:8585347-8585366 None:intergenic 45.0%
GAGTAGTTTCACCCCTTATG+TGG + chr6_3:8585705-8585724 Msa0937340:three_prime_UTR 45.0%
TAGTTTCACCCCTTATGTGG+CGG + chr6_3:8585708-8585727 Msa0937340:three_prime_UTR 45.0%
!!! TTTTATTTTTATGTATTTTT+TGG - chr6_3:8582551-8582570 None:intergenic 5.0%
! GACCCTGGGATCAAGCTTTT+TGG + chr6_3:8582604-8582623 Msa0937340:CDS 50.0%
TGGGAAGACAATTCCGGTAC+CGG + chr6_3:8582624-8582643 Msa0937340:CDS 50.0%
AGAAGATGAAGCTGGTGCTC+CGG - chr6_3:8582677-8582696 None:intergenic 50.0%
GCATCACCAGAAGATGAAGC+TGG - chr6_3:8582685-8582704 None:intergenic 50.0%
! TTTTGCTCGTCCTCAGTGGA+GGG - chr6_3:8584207-8584226 None:intergenic 50.0%
! ATTTTGCTCGTCCTCAGTGG+AGG - chr6_3:8584208-8584227 None:intergenic 50.0%
! GGACACGGCAGTATTTTGTC+TGG - chr6_3:8584297-8584316 None:intergenic 50.0%
GTGTCCCCGTTGTAATAGCA+TGG + chr6_3:8584311-8584330 Msa0937340:CDS 50.0%
TCTTGCAAAAATGGCGAGGC+TGG - chr6_3:8584374-8584393 None:intergenic 50.0%
GCCATGAGAAATGTGCCTGT+AGG + chr6_3:8584423-8584442 Msa0937340:CDS 50.0%
AGAAATGTGCCTGTAGGTGC+CGG + chr6_3:8584429-8584448 Msa0937340:CDS 50.0%
! TCTCAATCCGACTCGCCAAA+CGG + chr6_3:8584522-8584541 Msa0937340:CDS 50.0%
!! GAAGGATGATGGACTCCGTT+TGG - chr6_3:8584540-8584559 None:intergenic 50.0%
ATTCCACGGCAAAAGCCAAG+GGG - chr6_3:8584865-8584884 None:intergenic 50.0%
GATTCCACGGCAAAAGCCAA+GGG - chr6_3:8584866-8584885 None:intergenic 50.0%
TGCCGTGGAATCCATCTCAA+TGG + chr6_3:8584874-8584893 Msa0937340:CDS 50.0%
TGTGGGAAAAAAGCAGGTGG+TGG - chr6_3:8584915-8584934 None:intergenic 50.0%
CCTTGTGGGAAAAAAGCAGG+TGG - chr6_3:8584918-8584937 None:intergenic 50.0%
!!! CCACCTGCTTTTTTCCCACA+AGG + chr6_3:8584915-8584934 Msa0937340:CDS 50.0%
GTGGCATGGCAAATCCTTGT+GGG - chr6_3:8584932-8584951 None:intergenic 50.0%
AGTGGCATGGCAAATCCTTG+TGG - chr6_3:8584933-8584952 None:intergenic 50.0%
!! TCTATCCTCCACCGGCTTAT+TGG + chr6_3:8584952-8584971 Msa0937340:CDS 50.0%
!! CTATCCTCCACCGGCTTATT+GGG + chr6_3:8584953-8584972 Msa0937340:CDS 50.0%
!! TATCCTCCACCGGCTTATTG+GGG + chr6_3:8584954-8584973 Msa0937340:CDS 50.0%
CTAAAACCCCAATAAGCCGG+TGG - chr6_3:8584963-8584982 None:intergenic 50.0%
CGAGTTAGGACCGGAGTTAA+CGG - chr6_3:8585045-8585064 None:intergenic 50.0%
TAAGGTTGGCGAGTTAGGAC+CGG - chr6_3:8585054-8585073 None:intergenic 50.0%
! CTCAAACCAACCGACTCAAC+AGG + chr6_3:8585101-8585120 Msa0937340:CDS 50.0%
TCAGAACCTGTTGAGTCGGT+TGG - chr6_3:8585110-8585129 None:intergenic 50.0%
! GACTCAACAGGTTCTGACGA+AGG + chr6_3:8585113-8585132 Msa0937340:CDS 50.0%
CCTAGACATTGCTGCTGGAT+TGG - chr6_3:8585342-8585361 None:intergenic 50.0%
CCAATCCAGCAGCAATGTCT+AGG + chr6_3:8585339-8585358 Msa0937340:CDS 50.0%
GACATGCGTTACAAGCACAG+TGG + chr6_3:8585529-8585548 Msa0937340:three_prime_UTR 50.0%
! GGAGCACCAGCTTCATCTTC+TGG + chr6_3:8582676-8582695 Msa0937340:CDS 55.0%
TTTGCTCGTCCTCAGTGGAG+GGG - chr6_3:8584206-8584225 None:intergenic 55.0%
TGCCAGAGATACTGGACTGC+CGG + chr6_3:8584396-8584415 Msa0937340:CDS 55.0%
CACATTTCTCATGGCTCCCC+CGG - chr6_3:8584418-8584437 None:intergenic 55.0%
ATGGACTCCGTTTGGCGAGT+CGG - chr6_3:8584532-8584551 None:intergenic 55.0%
GGTAGTACGGAACTTGCGGT+GGG - chr6_3:8584836-8584855 None:intergenic 55.0%
CCAGGGTAGTACGGAACTTG+CGG - chr6_3:8584840-8584859 None:intergenic 55.0%
GGATTCCACGGCAAAAGCCA+AGG - chr6_3:8584867-8584886 None:intergenic 55.0%
CATGCCACTCTATCCTCCAC+CGG + chr6_3:8584944-8584963 Msa0937340:CDS 55.0%
TAAGCCGGTGGAGGATAGAG+TGG - chr6_3:8584951-8584970 None:intergenic 55.0%
AAACCCCAATAAGCCGGTGG+AGG - chr6_3:8584960-8584979 None:intergenic 55.0%
! CATGGATTGTTCCACGCACC+GGG - chr6_3:8584990-8585009 None:intergenic 55.0%
! CCATGGATTGTTCCACGCAC+CGG - chr6_3:8584991-8585010 None:intergenic 55.0%
TGCGTGGAACAATCCATGGC+TGG + chr6_3:8584992-8585011 Msa0937340:CDS 55.0%
GAAGAAGGTTGTGCCAGCCA+TGG - chr6_3:8585008-8585027 None:intergenic 55.0%
GGTCCTAACTCGCCAACCTT+AGG + chr6_3:8585053-8585072 Msa0937340:CDS 55.0%
GCAAAACTCACCTGCCATGC+AGG + chr6_3:8585316-8585335 Msa0937340:CDS 55.0%
TTTCACCCCTTATGTGGCGG+CGG + chr6_3:8585711-8585730 Msa0937340:three_prime_UTR 55.0%
TCCGGTAGAGTCACCGGATC+CGG - chr6_3:8582659-8582678 None:intergenic 60.0%
TGGTGCTCCGGTAGAGTCAC+CGG - chr6_3:8582665-8582684 None:intergenic 60.0%
GCCAGAGATACTGGACTGCC+GGG + chr6_3:8584397-8584416 Msa0937340:CDS 60.0%
CCAGAGATACTGGACTGCCG+GGG + chr6_3:8584398-8584417 Msa0937340:CDS 60.0%
CAGAGATACTGGACTGCCGG+GGG + chr6_3:8584399-8584418 Msa0937340:CDS 60.0%
TTCCTACGACCGGCACCTAC+AGG - chr6_3:8584441-8584460 None:intergenic 60.0%
GGGTAGTACGGAACTTGCGG+TGG - chr6_3:8584837-8584856 None:intergenic 60.0%
CCGCAAGTTCCGTACTACCC+TGG + chr6_3:8584837-8584856 Msa0937340:CDS 60.0%
!! CAAGGGGCACCAGGGTAGTA+CGG - chr6_3:8584849-8584868 None:intergenic 60.0%
!! GCAAAAGCCAAGGGGCACCA+GGG - chr6_3:8584857-8584876 None:intergenic 60.0%
CGGTGGAGGATAGAGTGGCA+TGG - chr6_3:8584946-8584965 None:intergenic 60.0%
!! GTTTTAGCATGCCCGGTGCG+TGG + chr6_3:8584976-8584995 Msa0937340:CDS 60.0%
CCGGTGCGTGGAACAATCCA+TGG + chr6_3:8584988-8585007 Msa0937340:CDS 60.0%
AGTAAGGCGGACGCGATTCG+TGG + chr6_3:8585242-8585261 Msa0937340:CDS 60.0%
GTAAGGCGGACGCGATTCGT+GGG + chr6_3:8585243-8585262 Msa0937340:CDS 60.0%
TAAGGCGGACGCGATTCGTG+GGG + chr6_3:8585244-8585263 Msa0937340:CDS 60.0%
!! TGCTGCTGGATTGGCCTGCA+TGG - chr6_3:8585333-8585352 None:intergenic 60.0%
CCGGCAGAGATCTCCGGTAC+CGG - chr6_3:8582640-8582659 None:intergenic 65.0%
! CCGGTACCGGAGATCTCTGC+CGG + chr6_3:8582637-8582656 Msa0937340:CDS 65.0%
CCGGATCCGGCAGAGATCTC+CGG - chr6_3:8582646-8582665 None:intergenic 65.0%
CCGGAGATCTCTGCCGGATC+CGG + chr6_3:8582643-8582662 Msa0937340:CDS 65.0%
GCCGGATCCGGTGACTCTAC+CGG + chr6_3:8582655-8582674 Msa0937340:CDS 65.0%
CCCCGGCAGTCCAGTATCTC+TGG - chr6_3:8584401-8584420 None:intergenic 65.0%
!! TGCCTGTAGGTGCCGGTCGT+AGG + chr6_3:8584436-8584455 Msa0937340:CDS 65.0%
CGTACTACCCTGGTGCCCCT+TGG + chr6_3:8584847-8584866 Msa0937340:CDS 65.0%
!! GGCAAAAGCCAAGGGGCACC+AGG - chr6_3:8584858-8584877 None:intergenic 65.0%
!! GTGCCCCTTGGCTTTTGCCG+TGG + chr6_3:8584859-8584878 Msa0937340:CDS 65.0%
AAGGCGGACGCGATTCGTGG+GGG + chr6_3:8585245-8585264 Msa0937340:CDS 65.0%
!! GCTGGATTGGCCTGCATGGC+AGG - chr6_3:8585329-8585348 None:intergenic 65.0%
TTGCCGCCGCCGCCACATAA+GGG - chr6_3:8585720-8585739 None:intergenic 65.0%
CACCCCTTATGTGGCGGCGG+CGG + chr6_3:8585714-8585733 Msa0937340:three_prime_UTR 70.0%
TGCCGCCGCCGCCACATAAG+GGG - chr6_3:8585719-8585738 None:intergenic 70.0%
CTTGCCGCCGCCGCCACATA+AGG - chr6_3:8585721-8585740 None:intergenic 70.0%
CTTATGTGGCGGCGGCGGCA+AGG + chr6_3:8585719-8585738 Msa0937340:three_prime_UTR 70.0%
GCGGACGCGATTCGTGGGGG+AGG + chr6_3:8585248-8585267 Msa0937340:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8582445 8585922 8582445 ID=Msa0937340;Name=Msa0937340
chr6_3 mRNA 8582445 8585922 8582445 ID=Msa0937340-mRNA-1;Parent=Msa0937340;Name=Msa0937340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=147|1|1|1|1|1|2|534|494
chr6_3 exon 8582445 8582771 8582445 ID=Msa0937340-mRNA-1:exon:2761;Parent=Msa0937340-mRNA-1
chr6_3 exon 8584084 8585922 8584084 ID=Msa0937340-mRNA-1:exon:2762;Parent=Msa0937340-mRNA-1
chr6_3 five_prime_UTR 8582445 8582591 8582445 ID=Msa0937340-mRNA-1:five_prime_utr;Parent=Msa0937340-mRNA-1
chr6_3 CDS 8582592 8582771 8582592 ID=Msa0937340-mRNA-1:cds;Parent=Msa0937340-mRNA-1
chr6_3 CDS 8584084 8585388 8584084 ID=Msa0937340-mRNA-1:cds;Parent=Msa0937340-mRNA-1
chr6_3 three_prime_UTR 8585389 8585922 8585389 ID=Msa0937340-mRNA-1:three_prime_utr;Parent=Msa0937340-mRNA-1
Gene Sequence

>Msa0937340

ATGGAAGCAAAAGACCCTGGGATCAAGCTTTTTGGGAAGACAATTCCGGTACCGGAGATCTCTGCCGGATCCGGTGACTCTACCGGAGCACCAGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGGTTCTTCCATGGATGAAGAAGAGATAGAAATTGATGAGGACACAATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGGTCACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGTGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGCTGTTCAGAATTCTCAATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACTGATACACCCTTGTGTGAATCAATGCAATCTGCATTGAACCTTGCTGATAAAGGAGTTAATATTTCCGCGAAAAACGGAATCATTAGACCGGAAGGTCTACGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCGGACACATCAACAGCTCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCGCAAGTTCCGTACTACCCTGGTGCCCCTTGGCTTTTGCCGTGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCTTCACCAAATAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCATGCTCAAACCAACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACGTTGAGGATTGATGACTTAGGAGAAGCAGAAAAAACCTCAATATTGACAACTCTCGGGATTAAAAATAGTAAGGCGGACGCGATTCGTGGGGGAGGACTTTTCAAAGCCTTTGGTTCAAAGAGCAATGAAAAAGATAGCGTGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA
Protein sequence

>Msa0937340

MEAKDPGIKLFGKTIPVPEISAGSGDSTGAPASSSGDAVDDGIIQNHGSSMDEEEIEIDEDTMEDESTKCKKEKDEALTQSSEKVTDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMQSALNLADKGVNISAKNGIIRPEGLRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAVNSGPNSPTLGKHSREESMLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKTSILTTLGIKNSKADAIRGGGLFKAFGSKSNEKDSVQNSPAMQANPAAMSRSISFHETS*