Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880210 | XP_013468771.2 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 7.21e-70 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880210 | sp|Q9FDX9|GG1_ARATH | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.42e-31 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880210 | A0A396JVQ5 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 3.44e-70 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078000 | Msa0880210 | 0.819364 | 1.207619e-52 | -8.615850e-47 |
| Msa0748460 | Msa0880210 | 0.949185 | 2.121936e-107 | -8.615850e-47 |
| Msa0170560 | Msa0880210 | 0.844461 | 7.453786e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880210 | MtrunA17_Chr1g0188131 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 6.63e-74 | 214 |
| Msa0880210 | MtrunA17_Chr1g0188161 | 79.817 | 109 | 18 | 3 | 1 | 106 | 1 | 108 | 1.63e-48 | 150 |
| Msa0880210 | MtrunA17_Chr1g0184941 | 53.846 | 104 | 47 | 1 | 3 | 106 | 7 | 109 | 7.01e-37 | 120 |
| Msa0880210 | MtrunA17_Chr1g0148341 | 40.217 | 92 | 52 | 2 | 16 | 105 | 35 | 125 | 4.77e-18 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880210 | AT3G63420.1 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
| Msa0880210 | AT3G63420.2 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
| Msa0880210 | AT3G22942.1 | 70.238 | 84 | 24 | 1 | 23 | 106 | 18 | 100 | 7.20e-32 | 108 |
| Msa0880210 | AT3G63420.3 | 56.842 | 95 | 40 | 1 | 12 | 106 | 45 | 138 | 1.23e-31 | 108 |
Find 71 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCCCATATAGGATTTA+AGG | 0.165452 | 6_1:-26728282 | None:intergenic |
| ATTACATGGTCAACACTTAA+TGG | 0.242126 | 6_1:+26725690 | Msa0880210:five_prime_UTR |
| CAGGACCAATCTCGAATTAA+AGG | 0.249997 | 6_1:-26728388 | None:intergenic |
| TGCAGCAGCCTTTGGAATCT+TGG | 0.250553 | 6_1:-26728319 | None:intergenic |
| AAATAAACTCACAAAATTTC+AGG | 0.285103 | 6_1:-26728407 | None:intergenic |
| GCAGCAGCCTTTGGAATCTT+GGG | 0.298135 | 6_1:-26728318 | None:intergenic |
| TTGGTCCCTTAAATCCTATA+TGG | 0.329222 | 6_1:+26728276 | Msa0880210:CDS |
| CAACTGGTTTGAAATAGTTA+AGG | 0.332083 | 6_1:+26728567 | Msa0880210:three_prime_UTR |
| CTGTTGTTTCTTTCATTACA+TGG | 0.337952 | 6_1:+26725676 | Msa0880210:five_prime_UTR |
| TAAATCCTATATGGGATAGA+TGG | 0.350762 | 6_1:+26728285 | Msa0880210:CDS |
| GATCATTTAAGAAATGTAAA+TGG | 0.351180 | 6_1:+26728530 | Msa0880210:three_prime_UTR |
| AAAGTGGGTCGTCGGGTTAT+CGG | 0.364117 | 6_1:-26725875 | None:intergenic |
| TTACATGGTCAACACTTAAT+GGG | 0.374330 | 6_1:+26725691 | Msa0880210:five_prime_UTR |
| AGACAGAGAAAGAGACAGTT+TGG | 0.376834 | 6_1:-26725628 | None:intergenic |
| AAACAACAGAGCGGGATCTA+TGG | 0.380122 | 6_1:-26725662 | None:intergenic |
| AACTGGTTTGAAATAGTTAA+GGG | 0.382241 | 6_1:+26728568 | Msa0880210:three_prime_UTR |
| CCAACATCTGCAGCAGCCTT+TGG | 0.388678 | 6_1:-26728327 | None:intergenic |
| TTGAAATAGTTAAGGGTTGA+AGG | 0.396529 | 6_1:+26728575 | Msa0880210:three_prime_UTR |
| AGGACCAATCTCGAATTAAA+GGG | 0.404517 | 6_1:-26728387 | None:intergenic |
| GAAGAAAGTGAGCGGGTTTG+AGG | 0.425851 | 6_1:-26725584 | None:intergenic |
| CTATCCCATATAGGATTTAA+GGG | 0.439135 | 6_1:-26728281 | None:intergenic |
| GCTAAGATTGTTTGTAGCAA+TGG | 0.445005 | 6_1:-26725822 | None:intergenic |
| TTCTGCTTTGACAGAACAGT+TGG | 0.445567 | 6_1:+26728257 | Msa0880210:intron |
| GGATACATGCTGAACTTAAA+CGG | 0.451608 | 6_1:+26725938 | Msa0880210:CDS |
| GAGCGGGATCTATGGTGGTT+TGG | 0.455036 | 6_1:-26725654 | None:intergenic |
| TCAAACCATCTATCCCATAT+AGG | 0.457946 | 6_1:-26728290 | None:intergenic |
| GCTGGAAAAGCTTGAGAGGA+TGG | 0.463059 | 6_1:+26727978 | Msa0880210:CDS |
| AAATTCAATGTAGGAAGAGC+TGG | 0.464733 | 6_1:+26727960 | Msa0880210:intron |
| CCAAAGGCTGCTGCAGATGT+TGG | 0.474766 | 6_1:+26728327 | Msa0880210:CDS |
| TACAATGGAAGCAATGGGTC+AGG | 0.475240 | 6_1:-26728142 | None:intergenic |
| ACTGAACAAAGTGGGTCGTC+GGG | 0.478830 | 6_1:-26725882 | None:intergenic |
| AAGAAAGTGAGCGGGTTTGA+GGG | 0.479219 | 6_1:-26725583 | None:intergenic |
| CAGATACAAGAGGGAAACAT+AGG | 0.483669 | 6_1:+26725917 | Msa0880210:CDS |
| TGGTTAGAAGTGCGTTTGTT+TGG | 0.484707 | 6_1:-26725608 | None:intergenic |
| ATATGACCGGGGAATGAGAA+TGG | 0.487064 | 6_1:-26725720 | None:intergenic |
| ACAAGAAACAAGGTACTTAG+AGG | 0.487565 | 6_1:+26725966 | Msa0880210:CDS |
| AATAGCTTGATGAAGCTAAA+GGG | 0.491263 | 6_1:-26725785 | None:intergenic |
| AAATAGCTTGATGAAGCTAA+AGG | 0.493185 | 6_1:-26725786 | None:intergenic |
| TGGTCCCTTAAATCCTATAT+GGG | 0.499485 | 6_1:+26728277 | Msa0880210:CDS |
| TGCTTGGCAATGTCGAGAAA+AGG | 0.501990 | 6_1:+26728119 | Msa0880210:CDS |
| ATATGGGATAGATGGTTTGA+AGG | 0.520251 | 6_1:+26728293 | Msa0880210:CDS |
| GGAGGGGTGAGTATCTCAAC+TGG | 0.521496 | 6_1:+26728551 | Msa0880210:three_prime_UTR |
| GACTGAACAAAGTGGGTCGT+CGG | 0.531551 | 6_1:-26725883 | None:intergenic |
| CAGCAGCCTTTGGAATCTTG+GGG | 0.533463 | 6_1:-26728317 | None:intergenic |
| TGGGACCCATTCTCATTCCC+CGG | 0.534066 | 6_1:+26725714 | Msa0880210:five_prime_UTR |
| TTTCTTAAATGATCATCGAC+TGG | 0.535411 | 6_1:-26728521 | None:intergenic |
| TTAGCCTCAGAAAATGCAAT+CGG | 0.537051 | 6_1:+26725840 | Msa0880210:exon |
| ACATGCTGAACTTAAACGGT+TGG | 0.538744 | 6_1:+26725942 | Msa0880210:CDS |
| GGATTTGTAGTGTAGAATGT+GGG | 0.540585 | 6_1:-26725562 | None:intergenic |
| TATGACCGGGGAATGAGAAT+GGG | 0.542153 | 6_1:-26725719 | None:intergenic |
| GTTTGGTGAAGAAAGTGAGC+GGG | 0.543461 | 6_1:-26725591 | None:intergenic |
| CCTCAGAAAATGCAATCGGA+TGG | 0.564403 | 6_1:+26725844 | Msa0880210:exon |
| AATGAAAGAAACAACAGAGC+GGG | 0.566645 | 6_1:-26725670 | None:intergenic |
| AAGAGCTGGAAAAGCTTGAG+AGG | 0.574159 | 6_1:+26727974 | Msa0880210:CDS |
| CATTTAAGAAATGTAAATGG+AGG | 0.575476 | 6_1:+26728533 | Msa0880210:three_prime_UTR |
| ATTTAAGAAATGTAAATGGA+GGG | 0.576481 | 6_1:+26728534 | Msa0880210:three_prime_UTR |
| TTTAAGAAATGTAAATGGAG+GGG | 0.587286 | 6_1:+26728535 | Msa0880210:three_prime_UTR |
| CATGGTCAACACTTAATGGG+TGG | 0.588204 | 6_1:+26725694 | Msa0880210:five_prime_UTR |
| ATGGTCAACACTTAATGGGT+GGG | 0.597116 | 6_1:+26725695 | Msa0880210:five_prime_UTR |
| GGGATTTGTAGTGTAGAATG+TGG | 0.597864 | 6_1:-26725563 | None:intergenic |
| CTCAGAAAATGCAATCGGAT+GGG | 0.599299 | 6_1:+26725845 | Msa0880210:exon |
| GATTTGTAGTGTAGAATGTG+GGG | 0.624298 | 6_1:-26725561 | None:intergenic |
| AAGACTGAGACTGAACAAAG+TGG | 0.627696 | 6_1:-26725891 | None:intergenic |
| CAACAGAGCGGGATCTATGG+TGG | 0.631039 | 6_1:-26725659 | None:intergenic |
| GAAGGACCCCAAGATTCCAA+AGG | 0.632878 | 6_1:+26728311 | Msa0880210:CDS |
| AGACTGAGACTGAACAAAGT+GGG | 0.647300 | 6_1:-26725890 | None:intergenic |
| ATTTGTAGTGTAGAATGTGG+GGG | 0.661830 | 6_1:-26725560 | None:intergenic |
| TTTGTAGTGTAGAATGTGGG+GGG | 0.665344 | 6_1:-26725559 | None:intergenic |
| TGTTTGGTGAAGAAAGTGAG+CGG | 0.672165 | 6_1:-26725592 | None:intergenic |
| AACGGTTGGAACAAGAAACA+AGG | 0.682214 | 6_1:+26725956 | Msa0880210:CDS |
| TAATGAAAGAAACAACAGAG+CGG | 0.759258 | 6_1:-26725671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTCTTTTTTTAATAATT+GGG | - | chr6_1:26726730-26726749 | None:intergenic | 10.0% |
| !!! | AAAGTTCTTTTTTTAATAAT+TGG | - | chr6_1:26726731-26726750 | None:intergenic | 10.0% |
| !!! | AAAAAAAGAACTTTTTTTTT+TGG | + | chr6_1:26726737-26726756 | Msa0880210:intron | 10.0% |
| !!! | AAAAAAGAACTTTTTTTTTT+GGG | + | chr6_1:26726738-26726757 | Msa0880210:intron | 10.0% |
| !!! | TCAATTAAAGCTAAATTTTA+AGG | - | chr6_1:26726166-26726185 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTGTTTTTAGTT+TGG | + | chr6_1:26726211-26726230 | Msa0880210:intron | 15.0% |
| !!! | AAAAAGAACTTTTTTTTTTG+GGG | + | chr6_1:26726739-26726758 | Msa0880210:intron | 15.0% |
| !! | AAAATAATCTTAACTAGTTA+AGG | - | chr6_1:26727747-26727766 | None:intergenic | 15.0% |
| !! | TTACAAAAGTAATTTATCAA+AGG | - | chr6_1:26728219-26728238 | None:intergenic | 15.0% |
| !! | TTAACGAGTAATAGTAAAAT+GGG | + | chr6_1:26726118-26726137 | Msa0880210:intron | 20.0% |
| !!! | TTTAGCTTTAATTGATTTCT+TGG | + | chr6_1:26726171-26726190 | Msa0880210:intron | 20.0% |
| !!! | TTAGCTTTAATTGATTTCTT+GGG | + | chr6_1:26726172-26726191 | Msa0880210:intron | 20.0% |
| !!! | TCAACTTTTGATAGTTAAAA+GGG | + | chr6_1:26726344-26726363 | Msa0880210:intron | 20.0% |
| !!! | TTGAATTTTTAGTGACTATA+TGG | + | chr6_1:26726446-26726465 | Msa0880210:intron | 20.0% |
| !!! | TAAAATTTTGTTGTGTTTGT+TGG | - | chr6_1:26727300-26727319 | None:intergenic | 20.0% |
| !! | TTGATCTTATTAAAGATTCA+GGG | + | chr6_1:26727326-26727345 | Msa0880210:intron | 20.0% |
| !! | ATTCACTATAAATTCAATGT+AGG | + | chr6_1:26727951-26727970 | Msa0880210:intron | 20.0% |
| !! | AAATAAACTCACAAAATTTC+AGG | - | chr6_1:26728410-26728429 | None:intergenic | 20.0% |
| !! | GATCATTTAAGAAATGTAAA+TGG | + | chr6_1:26728530-26728549 | Msa0880210:three_prime_UTR | 20.0% |
| !! | ATTTAAGAAATGTAAATGGA+GGG | + | chr6_1:26728534-26728553 | Msa0880210:three_prime_UTR | 20.0% |
| ! | TTGAAGTGAAAAAATATGAC+CGG | - | chr6_1:26725736-26725755 | None:intergenic | 25.0% |
| ! | GTTAACGAGTAATAGTAAAA+TGG | + | chr6_1:26726117-26726136 | Msa0880210:intron | 25.0% |
| ! | ACTGAAAAGTAATGACAATT+TGG | + | chr6_1:26726250-26726269 | Msa0880210:intron | 25.0% |
| ! | CTGAAAAGTAATGACAATTT+GGG | + | chr6_1:26726251-26726270 | Msa0880210:intron | 25.0% |
| ! | TGAAAAGTAATGACAATTTG+GGG | + | chr6_1:26726252-26726271 | Msa0880210:intron | 25.0% |
| !!! | GTCAACTTTTGATAGTTAAA+AGG | + | chr6_1:26726343-26726362 | Msa0880210:intron | 25.0% |
| ! | TTTGTAATAACAGCAACATA+AGG | + | chr6_1:26726886-26726905 | Msa0880210:intron | 25.0% |
| ! | AGAAAGAAAGACGAAAATTA+AGG | - | chr6_1:26726956-26726975 | None:intergenic | 25.0% |
| ! | CTTGATCTTATTAAAGATTC+AGG | + | chr6_1:26727325-26727344 | Msa0880210:intron | 25.0% |
| ! | GCAAATTACGAATTAATCAA+GGG | - | chr6_1:26727623-26727642 | None:intergenic | 25.0% |
| !!! | CATTCATTTCTGAGATATAT+AGG | + | chr6_1:26727815-26727834 | Msa0880210:intron | 25.0% |
| !! | ATCATCTTTTCTGTAAAAAG+TGG | - | chr6_1:26727863-26727882 | None:intergenic | 25.0% |
| ! | TCAAATTTGATCAGACATTA+TGG | - | chr6_1:26728054-26728073 | None:intergenic | 25.0% |
| ! | ATTAAGTTTGAATTTCTGTC+TGG | + | chr6_1:26728079-26728098 | Msa0880210:intron | 25.0% |
| ! | CATTTAAGAAATGTAAATGG+AGG | + | chr6_1:26728533-26728552 | Msa0880210:three_prime_UTR | 25.0% |
| ! | TTTAAGAAATGTAAATGGAG+GGG | + | chr6_1:26728535-26728554 | Msa0880210:three_prime_UTR | 25.0% |
| !!! | AACTGGTTTGAAATAGTTAA+GGG | + | chr6_1:26728568-26728587 | Msa0880210:three_prime_UTR | 25.0% |
| TAATGAAAGAAACAACAGAG+CGG | - | chr6_1:26725674-26725693 | None:intergenic | 30.0% | |
| !! | CTGTTGTTTCTTTCATTACA+TGG | + | chr6_1:26725676-26725695 | Msa0880210:five_prime_UTR | 30.0% |
| ATTACATGGTCAACACTTAA+TGG | + | chr6_1:26725690-26725709 | Msa0880210:five_prime_UTR | 30.0% | |
| TTACATGGTCAACACTTAAT+GGG | + | chr6_1:26725691-26725710 | Msa0880210:five_prime_UTR | 30.0% | |
| TGAAGTGAAAAAATATGACC+GGG | - | chr6_1:26725735-26725754 | None:intergenic | 30.0% | |
| AATAGCTTGATGAAGCTAAA+GGG | - | chr6_1:26725788-26725807 | None:intergenic | 30.0% | |
| AAATAGCTTGATGAAGCTAA+AGG | - | chr6_1:26725789-26725808 | None:intergenic | 30.0% | |
| !!! | AGTCTTTTTCAGATACAAGA+GGG | + | chr6_1:26725908-26725927 | Msa0880210:CDS | 30.0% |
| ! | TCTTCATCTTTACCATGTTT+TGG | + | chr6_1:26726042-26726061 | Msa0880210:intron | 30.0% |
| AAGAACAAAACTCCAAAACA+TGG | - | chr6_1:26726057-26726076 | None:intergenic | 30.0% | |
| ! | TTCCATGTACTTCAAGTTTA+AGG | + | chr6_1:26726321-26726340 | Msa0880210:intron | 30.0% |
| GAACAAATATTTGCAACATG+AGG | - | chr6_1:26726407-26726426 | None:intergenic | 30.0% | |
| !! | TTCGTCTTGTTCTAACATTT+TGG | - | chr6_1:26726559-26726578 | None:intergenic | 30.0% |
| ACGAAAATTAAGGCGAAAAA+TGG | - | chr6_1:26726946-26726965 | None:intergenic | 30.0% | |
| TGTGCCATCAAACAAAAAAA+TGG | + | chr6_1:26727141-26727160 | Msa0880210:intron | 30.0% | |
| GTGCCATCAAACAAAAAAAT+GGG | + | chr6_1:26727142-26727161 | Msa0880210:intron | 30.0% | |
| CTTGTGTAGAAAATATGGTA+AGG | - | chr6_1:26727242-26727261 | None:intergenic | 30.0% | |
| ! | TACCATATTTTCTACACAAG+AGG | + | chr6_1:26727242-26727261 | Msa0880210:intron | 30.0% |
| GGATAGACATTTATCAGTAA+TGG | - | chr6_1:26727375-26727394 | None:intergenic | 30.0% | |
| TCAAGGGAACTGAAAAATTA+AGG | - | chr6_1:26727607-26727626 | None:intergenic | 30.0% | |
| GGCAAATTACGAATTAATCA+AGG | - | chr6_1:26727624-26727643 | None:intergenic | 30.0% | |
| ! | ATGTCTGAAGTTGATTGATA+AGG | + | chr6_1:26727648-26727667 | Msa0880210:intron | 30.0% |
| ATAAGCCAGTTACCTAAAAT+TGG | - | chr6_1:26727677-26727696 | None:intergenic | 30.0% | |
| !!! | TATATAGGTTGTTTTTCCAG+CGG | + | chr6_1:26727830-26727849 | Msa0880210:intron | 30.0% |
| ! | TCTTTTCTGTAAAAAGTGGT+TGG | - | chr6_1:26727859-26727878 | None:intergenic | 30.0% |
| ! | GATTTTACAATGGAAGCAAT+GGG | - | chr6_1:26728150-26728169 | None:intergenic | 30.0% |
| ! | AGATTTTACAATGGAAGCAA+TGG | - | chr6_1:26728151-26728170 | None:intergenic | 30.0% |
| ! | TGGCATAAGAGATTTTACAA+TGG | - | chr6_1:26728160-26728179 | None:intergenic | 30.0% |
| TAGCATTAAACACTAGAAGT+TGG | - | chr6_1:26728180-26728199 | None:intergenic | 30.0% | |
| CTATCCCATATAGGATTTAA+GGG | - | chr6_1:26728284-26728303 | None:intergenic | 30.0% | |
| TCTATCCCATATAGGATTTA+AGG | - | chr6_1:26728285-26728304 | None:intergenic | 30.0% | |
| TAAATCCTATATGGGATAGA+TGG | + | chr6_1:26728285-26728304 | Msa0880210:CDS | 30.0% | |
| AGGGAAAAAAACGTAGAATT+TGG | - | chr6_1:26728371-26728390 | None:intergenic | 30.0% | |
| ! | TTTTCCCTTTAATTCGAGAT+TGG | + | chr6_1:26728383-26728402 | Msa0880210:three_prime_UTR | 30.0% |
| TTTCTTAAATGATCATCGAC+TGG | - | chr6_1:26728524-26728543 | None:intergenic | 30.0% | |
| !! | CAACTGGTTTGAAATAGTTA+AGG | + | chr6_1:26728567-26728586 | Msa0880210:three_prime_UTR | 30.0% |
| ATTTGTAGTGTAGAATGTGG+GGG | - | chr6_1:26725563-26725582 | None:intergenic | 35.0% | |
| GATTTGTAGTGTAGAATGTG+GGG | - | chr6_1:26725564-26725583 | None:intergenic | 35.0% | |
| GGATTTGTAGTGTAGAATGT+GGG | - | chr6_1:26725565-26725584 | None:intergenic | 35.0% | |
| AATGAAAGAAACAACAGAGC+GGG | - | chr6_1:26725673-26725692 | None:intergenic | 35.0% | |
| GAAGTGAAAAAATATGACCG+GGG | - | chr6_1:26725734-26725753 | None:intergenic | 35.0% | |
| GCTAAGATTGTTTGTAGCAA+TGG | - | chr6_1:26725825-26725844 | None:intergenic | 35.0% | |
| TTAGCCTCAGAAAATGCAAT+CGG | + | chr6_1:26725840-26725859 | Msa0880210:exon | 35.0% | |
| !!! | CAGTCTTTTTCAGATACAAG+AGG | + | chr6_1:26725907-26725926 | Msa0880210:CDS | 35.0% |
| GGATACATGCTGAACTTAAA+CGG | + | chr6_1:26725938-26725957 | Msa0880210:CDS | 35.0% | |
| ! | ACAAGAAACAAGGTACTTAG+AGG | + | chr6_1:26725966-26725985 | Msa0880210:CDS | 35.0% |
| ATTTCTTGGGATACTCTTCT+GGG | + | chr6_1:26726185-26726204 | Msa0880210:intron | 35.0% | |
| GGGAATTATGTTGTTGTGAT+AGG | + | chr6_1:26726272-26726291 | Msa0880210:intron | 35.0% | |
| TTATGTTGTTGTGATAGGAG+AGG | + | chr6_1:26726277-26726296 | Msa0880210:intron | 35.0% | |
| !! | ATAGGAGAGGTACTTGTAAT+TGG | + | chr6_1:26726290-26726309 | Msa0880210:intron | 35.0% |
| !! | TAGGAGAGGTACTTGTAATT+GGG | + | chr6_1:26726291-26726310 | Msa0880210:intron | 35.0% |
| AACTTGAAGTACATGGAAGA+TGG | - | chr6_1:26726319-26726338 | None:intergenic | 35.0% | |
| GACCTTAAACTTGAAGTACA+TGG | - | chr6_1:26726326-26726345 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTGGGGTAGCCA+AGG | + | chr6_1:26726748-26726767 | Msa0880210:intron | 35.0% |
| ACAAAGTCTCTCATAGCAAT+GGG | - | chr6_1:26726778-26726797 | None:intergenic | 35.0% | |
| CCTCAAATTGTTCAAAAGTC+AGG | - | chr6_1:26727022-26727041 | None:intergenic | 35.0% | |
| ! | CCTGACTTTTGAACAATTTG+AGG | + | chr6_1:26727019-26727038 | Msa0880210:intron | 35.0% |
| GTAGTTGCGTTATGCTTATT+TGG | + | chr6_1:26727062-26727081 | Msa0880210:intron | 35.0% | |
| !!! | CTGCCCATTTTTTTGTTTGA+TGG | - | chr6_1:26727148-26727167 | None:intergenic | 35.0% |
| AGCCTCTTGTGTAGAAAATA+TGG | - | chr6_1:26727247-26727266 | None:intergenic | 35.0% | |
| ! | AGGGTCTTATGAAAGATTCA+GGG | + | chr6_1:26727273-26727292 | Msa0880210:intron | 35.0% |
| GGGTCTTGATAAATTAGTGT+TGG | + | chr6_1:26727346-26727365 | Msa0880210:intron | 35.0% | |
| TCTAGATGACATGTTCTGTT+TGG | - | chr6_1:26727396-26727415 | None:intergenic | 35.0% | |
| TTACCTGCGTTGGAATATTT+AGG | + | chr6_1:26727427-26727446 | Msa0880210:intron | 35.0% | |
| TACCTGCGTTGGAATATTTA+GGG | + | chr6_1:26727428-26727447 | Msa0880210:intron | 35.0% | |
| ! | CAAGAACTCAAAAAAGGTGT+TGG | - | chr6_1:26727478-26727497 | None:intergenic | 35.0% |
| GCAGAACAAGAACTCAAAAA+AGG | - | chr6_1:26727484-26727503 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTTCTTGTTCTGCT+CGG | + | chr6_1:26727485-26727504 | Msa0880210:intron | 35.0% |
| TGTTTAAGTCAATTGCACAG+GGG | - | chr6_1:26727555-26727574 | None:intergenic | 35.0% | |
| GTGTTTAAGTCAATTGCACA+GGG | - | chr6_1:26727556-26727575 | None:intergenic | 35.0% | |
| ! | GCAATTGACTTAAACACCAA+TGG | + | chr6_1:26727559-26727578 | Msa0880210:intron | 35.0% |
| TATTTGCATACTGTGTCCAT+TGG | - | chr6_1:26727578-26727597 | None:intergenic | 35.0% | |
| ! | TCTGAAGTTGATTGATAAGG+TGG | + | chr6_1:26727651-26727670 | Msa0880210:intron | 35.0% |
| ! | TTGATAAGGTGGCCAATTTT+AGG | + | chr6_1:26727662-26727681 | Msa0880210:intron | 35.0% |
| CAGATAATTAGTGCTCATGA+TGG | - | chr6_1:26727774-26727793 | None:intergenic | 35.0% | |
| TCATGAGCACTAATTATCTG+TGG | + | chr6_1:26727774-26727793 | Msa0880210:intron | 35.0% | |
| TTTCTGTAAAAAGTGGTTGG+AGG | - | chr6_1:26727856-26727875 | None:intergenic | 35.0% | |
| AAATTCAATGTAGGAAGAGC+TGG | + | chr6_1:26727960-26727979 | Msa0880210:intron | 35.0% | |
| TTGGTCCCTTAAATCCTATA+TGG | + | chr6_1:26728276-26728295 | Msa0880210:CDS | 35.0% | |
| TGGTCCCTTAAATCCTATAT+GGG | + | chr6_1:26728277-26728296 | Msa0880210:CDS | 35.0% | |
| TCAAACCATCTATCCCATAT+AGG | - | chr6_1:26728293-26728312 | None:intergenic | 35.0% | |
| ATATGGGATAGATGGTTTGA+AGG | + | chr6_1:26728293-26728312 | Msa0880210:CDS | 35.0% | |
| AGGACCAATCTCGAATTAAA+GGG | - | chr6_1:26728390-26728409 | None:intergenic | 35.0% | |
| TTTGTAGTGTAGAATGTGGG+GGG | - | chr6_1:26725562-26725581 | None:intergenic | 40.0% | |
| GGGATTTGTAGTGTAGAATG+TGG | - | chr6_1:26725566-26725585 | None:intergenic | 40.0% | |
| ! | TGTTTGGTGAAGAAAGTGAG+CGG | - | chr6_1:26725595-26725614 | None:intergenic | 40.0% |
| ! | TGGTTAGAAGTGCGTTTGTT+TGG | - | chr6_1:26725611-26725630 | None:intergenic | 40.0% |
| AGACAGAGAAAGAGACAGTT+TGG | - | chr6_1:26725631-26725650 | None:intergenic | 40.0% | |
| ! | ATGGTCAACACTTAATGGGT+GGG | + | chr6_1:26725695-26725714 | Msa0880210:five_prime_UTR | 40.0% |
| CTCAGAAAATGCAATCGGAT+GGG | + | chr6_1:26725845-26725864 | Msa0880210:exon | 40.0% | |
| AGACTGAGACTGAACAAAGT+GGG | - | chr6_1:26725893-26725912 | None:intergenic | 40.0% | |
| AAGACTGAGACTGAACAAAG+TGG | - | chr6_1:26725894-26725913 | None:intergenic | 40.0% | |
| CAGATACAAGAGGGAAACAT+AGG | + | chr6_1:26725917-26725936 | Msa0880210:CDS | 40.0% | |
| ACATGCTGAACTTAAACGGT+TGG | + | chr6_1:26725942-26725961 | Msa0880210:CDS | 40.0% | |
| AACGGTTGGAACAAGAAACA+AGG | + | chr6_1:26725956-26725975 | Msa0880210:CDS | 40.0% | |
| ! | GAAACAAGGTACTTAGAGGT+TGG | + | chr6_1:26725970-26725989 | Msa0880210:intron | 40.0% |
| GATTTCTTGGGATACTCTTC+TGG | + | chr6_1:26726184-26726203 | Msa0880210:intron | 40.0% | |
| !! | AGGAGAGGTACTTGTAATTG+GGG | + | chr6_1:26726292-26726311 | Msa0880210:intron | 40.0% |
| CAAAGTCTCTCATAGCAATG+GGG | - | chr6_1:26726777-26726796 | None:intergenic | 40.0% | |
| GACAAAGTCTCTCATAGCAA+TGG | - | chr6_1:26726779-26726798 | None:intergenic | 40.0% | |
| GAGACTTGATGTTTGACGTT+TGG | + | chr6_1:26726986-26727005 | Msa0880210:intron | 40.0% | |
| ! | GTCTCTTTTGCTCACTCTAT+AGG | - | chr6_1:26727094-26727113 | None:intergenic | 40.0% |
| GCACATGTTTGTATGCACAT+TGG | + | chr6_1:26727117-26727136 | Msa0880210:intron | 40.0% | |
| GTTGCGTACAAAAGACCAAA+TGG | - | chr6_1:26727220-26727239 | None:intergenic | 40.0% | |
| CTGAATCTTTCATAAGACCC+TGG | - | chr6_1:26727274-26727293 | None:intergenic | 40.0% | |
| ! | CAGGGTCTTATGAAAGATTC+AGG | + | chr6_1:26727272-26727291 | Msa0880210:intron | 40.0% |
| AACCCTAAATATTCCAACGC+AGG | - | chr6_1:26727433-26727452 | None:intergenic | 40.0% | |
| !! | AACTCAAAAAAGGTGTTGGC+AGG | - | chr6_1:26727474-26727493 | None:intergenic | 40.0% |
| TTCTTGTTCTGCTCGGTTAA+GGG | + | chr6_1:26727492-26727511 | Msa0880210:intron | 40.0% | |
| GGGGATTTGAGAAACATCAA+TGG | - | chr6_1:26727536-26727555 | None:intergenic | 40.0% | |
| GGTGTTTAAGTCAATTGCAC+AGG | - | chr6_1:26727557-26727576 | None:intergenic | 40.0% | |
| CAATCAACTTCAGACATTGC+TGG | - | chr6_1:26727645-26727664 | None:intergenic | 40.0% | |
| ! | AACTGGCTTATATCAGTCGT+TGG | + | chr6_1:26727686-26727705 | Msa0880210:intron | 40.0% |
| TGAGCACTAATTATCTGTGG+AGG | + | chr6_1:26727777-26727796 | Msa0880210:intron | 40.0% | |
| TTCTGCTTTGACAGAACAGT+TGG | + | chr6_1:26728257-26728276 | Msa0880210:intron | 40.0% | |
| CAGGACCAATCTCGAATTAA+AGG | - | chr6_1:26728391-26728410 | None:intergenic | 40.0% | |
| ! | AAGAAAGTGAGCGGGTTTGA+GGG | - | chr6_1:26725586-26725605 | None:intergenic | 45.0% |
| ! | GTTTGGTGAAGAAAGTGAGC+GGG | - | chr6_1:26725594-26725613 | None:intergenic | 45.0% |
| AAACAACAGAGCGGGATCTA+TGG | - | chr6_1:26725665-26725684 | None:intergenic | 45.0% | |
| CATGGTCAACACTTAATGGG+TGG | + | chr6_1:26725694-26725713 | Msa0880210:five_prime_UTR | 45.0% | |
| TATGACCGGGGAATGAGAAT+GGG | - | chr6_1:26725722-26725741 | None:intergenic | 45.0% | |
| ATATGACCGGGGAATGAGAA+TGG | - | chr6_1:26725723-26725742 | None:intergenic | 45.0% | |
| ! | CCATCCGATTGCATTTTCTG+AGG | - | chr6_1:26725847-26725866 | None:intergenic | 45.0% |
| CCTCAGAAAATGCAATCGGA+TGG | + | chr6_1:26725844-26725863 | Msa0880210:exon | 45.0% | |
| GCTATGAGAGACTTTGTCTC+TGG | + | chr6_1:26726781-26726800 | Msa0880210:intron | 45.0% | |
| ! | AGAGACTTTGTCTCTGGTTC+AGG | + | chr6_1:26726787-26726806 | Msa0880210:intron | 45.0% |
| ! | GAGACTTTGTCTCTGGTTCA+GGG | + | chr6_1:26726788-26726807 | Msa0880210:intron | 45.0% |
| ! | AGACTTTGTCTCTGGTTCAG+GGG | + | chr6_1:26726789-26726808 | Msa0880210:intron | 45.0% |
| ! | GGATGAGTTTTGCTGAGACT+TGG | + | chr6_1:26727040-26727059 | Msa0880210:intron | 45.0% |
| ! | TACACAAGAGGCTGTTTCCA+GGG | + | chr6_1:26727254-26727273 | Msa0880210:intron | 45.0% |
| TGATGTGACATTACCTGCGT+TGG | + | chr6_1:26727417-26727436 | Msa0880210:intron | 45.0% | |
| GTTCTTGTTCTGCTCGGTTA+AGG | + | chr6_1:26727491-26727510 | Msa0880210:intron | 45.0% | |
| !! | GGTGGCCAATTTTAGGTAAC+TGG | + | chr6_1:26727669-26727688 | Msa0880210:intron | 45.0% |
| AAGAGCTGGAAAAGCTTGAG+AGG | + | chr6_1:26727974-26727993 | Msa0880210:CDS | 45.0% | |
| !!! | TGTCTGGTGTTTGTTTTGCC+AGG | + | chr6_1:26728095-26728114 | Msa0880210:intron | 45.0% |
| !!! | GTTTGTTTTGCCAGGATGCT+TGG | + | chr6_1:26728103-26728122 | Msa0880210:intron | 45.0% |
| TGCTTGGCAATGTCGAGAAA+AGG | + | chr6_1:26728119-26728138 | Msa0880210:CDS | 45.0% | |
| TACAATGGAAGCAATGGGTC+AGG | - | chr6_1:26728145-26728164 | None:intergenic | 45.0% | |
| GTAGAATGTGGGGGGTGAAA+AGG | - | chr6_1:26725554-26725573 | None:intergenic | 50.0% | |
| ! | GAAGAAAGTGAGCGGGTTTG+AGG | - | chr6_1:26725587-26725606 | None:intergenic | 50.0% |
| AAAGTGGGTCGTCGGGTTAT+CGG | - | chr6_1:26725878-26725897 | None:intergenic | 50.0% | |
| ACTGAACAAAGTGGGTCGTC+GGG | - | chr6_1:26725885-26725904 | None:intergenic | 50.0% | |
| GACTGAACAAAGTGGGTCGT+CGG | - | chr6_1:26725886-26725905 | None:intergenic | 50.0% | |
| AGTCTCTCATAGCAATGGGG+TGG | - | chr6_1:26726774-26726793 | None:intergenic | 50.0% | |
| TGGTTCAGGGGTCTTCACTT+AGG | + | chr6_1:26726801-26726820 | Msa0880210:intron | 50.0% | |
| !! | ATGCGGGAGCATTAGTGCAA+CGG | - | chr6_1:26727172-26727191 | None:intergenic | 50.0% |
| ! | CTACACAAGAGGCTGTTTCC+AGG | + | chr6_1:26727253-26727272 | Msa0880210:intron | 50.0% |
| GCTGGAAAAGCTTGAGAGGA+TGG | + | chr6_1:26727978-26727997 | Msa0880210:CDS | 50.0% | |
| GAAGGACCCCAAGATTCCAA+AGG | + | chr6_1:26728311-26728330 | Msa0880210:CDS | 50.0% | |
| !! | CAGCAGCCTTTGGAATCTTG+GGG | - | chr6_1:26728320-26728339 | None:intergenic | 50.0% |
| !! | GCAGCAGCCTTTGGAATCTT+GGG | - | chr6_1:26728321-26728340 | None:intergenic | 50.0% |
| !! | TGCAGCAGCCTTTGGAATCT+TGG | - | chr6_1:26728322-26728341 | None:intergenic | 50.0% |
| GAGCGGGATCTATGGTGGTT+TGG | - | chr6_1:26725657-26725676 | None:intergenic | 55.0% | |
| CAACAGAGCGGGATCTATGG+TGG | - | chr6_1:26725662-26725681 | None:intergenic | 55.0% | |
| TGGGACCCATTCTCATTCCC+CGG | + | chr6_1:26725714-26725733 | Msa0880210:five_prime_UTR | 55.0% | |
| TCATAGCAATGGGGTGGCCT+TGG | - | chr6_1:26726768-26726787 | None:intergenic | 55.0% | |
| !! | TGCGGGAGCATTAGTGCAAC+GGG | - | chr6_1:26727171-26727190 | None:intergenic | 55.0% |
| ACTAATGCTCCCGCATACGC+AGG | + | chr6_1:26727176-26727195 | Msa0880210:intron | 55.0% | |
| CTAATGCTCCCGCATACGCA+GGG | + | chr6_1:26727177-26727196 | Msa0880210:intron | 55.0% | |
| CAAATGGTGAGACCCCTTCC+TGG | - | chr6_1:26727204-26727223 | None:intergenic | 55.0% | |
| CAGGAAGGGGTCTCACCATT+TGG | + | chr6_1:26727202-26727221 | Msa0880210:intron | 55.0% | |
| AAAAAGTGGTTGGAGGCCGC+TGG | - | chr6_1:26727849-26727868 | None:intergenic | 55.0% | |
| CTCGACATTGCCAAGCATCC+TGG | - | chr6_1:26728116-26728135 | None:intergenic | 55.0% | |
| CCAACATCTGCAGCAGCCTT+TGG | - | chr6_1:26728330-26728349 | None:intergenic | 55.0% | |
| CCAAAGGCTGCTGCAGATGT+TGG | + | chr6_1:26728327-26728346 | Msa0880210:CDS | 55.0% | |
| GGAGGGGTGAGTATCTCAAC+TGG | + | chr6_1:26728551-26728570 | Msa0880210:three_prime_UTR | 55.0% | |
| TTCCTGGACCCTGCGTATGC+GGG | - | chr6_1:26727188-26727207 | None:intergenic | 60.0% | |
| CTTCCTGGACCCTGCGTATG+CGG | - | chr6_1:26727189-26727208 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCAGGAA+GGG | + | chr6_1:26727188-26727207 | Msa0880210:intron | 60.0% | |
| CATACGCAGGGTCCAGGAAG+GGG | + | chr6_1:26727189-26727208 | Msa0880210:intron | 60.0% | |
| CGCATACGCAGGGTCCAGGA+AGG | + | chr6_1:26727187-26727206 | Msa0880210:intron | 65.0% | |
| CTCCCGCATACGCAGGGTCC+AGG | + | chr6_1:26727183-26727202 | Msa0880210:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 26725501 | 26728594 | 26725501 | ID=Msa0880210;Name=Msa0880210 |
| chr6_1 | mRNA | 26725501 | 26728594 | 26725501 | ID=Msa0880210-mRNA-1;Parent=Msa0880210;Name=Msa0880210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=352|1|1|1|0.66|0.75|4|236|106 |
| chr6_1 | exon | 26725501 | 26725987 | 26725501 | ID=Msa0880210-mRNA-1:exon:6462;Parent=Msa0880210-mRNA-1 |
| chr6_1 | exon | 26727973 | 26728025 | 26727973 | ID=Msa0880210-mRNA-1:exon:6463;Parent=Msa0880210-mRNA-1 |
| chr6_1 | exon | 26728117 | 26728161 | 26728117 | ID=Msa0880210-mRNA-1:exon:6464;Parent=Msa0880210-mRNA-1 |
| chr6_1 | exon | 26728271 | 26728594 | 26728271 | ID=Msa0880210-mRNA-1:exon:6465;Parent=Msa0880210-mRNA-1 |
| chr6_1 | five_prime_UTR | 26725501 | 26725852 | 26725501 | ID=Msa0880210-mRNA-1:five_prime_utr;Parent=Msa0880210-mRNA-1 |
| chr6_1 | CDS | 26725853 | 26725987 | 26725853 | ID=Msa0880210-mRNA-1:cds;Parent=Msa0880210-mRNA-1 |
| chr6_1 | CDS | 26727973 | 26728025 | 26727973 | ID=Msa0880210-mRNA-1:cds;Parent=Msa0880210-mRNA-1 |
| chr6_1 | CDS | 26728117 | 26728161 | 26728117 | ID=Msa0880210-mRNA-1:cds;Parent=Msa0880210-mRNA-1 |
| chr6_1 | CDS | 26728271 | 26728358 | 26728271 | ID=Msa0880210-mRNA-1:cds;Parent=Msa0880210-mRNA-1 |
| chr6_1 | three_prime_UTR | 26728359 | 26728594 | 26728359 | ID=Msa0880210-mRNA-1:three_prime_utr;Parent=Msa0880210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
