Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170560 | XP_013468771.2 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 7.21e-70 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170560 | sp|Q9FDX9|GG1_ARATH | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.42e-31 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170560 | A0A396JVQ5 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 3.44e-70 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0170560 | 0.817503 | 3.187553e-52 | -8.615850e-47 |
| Msa0001950 | Msa0170560 | -0.804573 | 2.024989e-49 | -8.615850e-47 |
| Msa0032840 | Msa0170560 | 0.808341 | 3.248381e-50 | -8.615850e-47 |
| Msa0049400 | Msa0170560 | 0.800686 | 1.282893e-48 | -8.615850e-47 |
| Msa0078000 | Msa0170560 | 0.943245 | 1.702907e-102 | -8.615850e-47 |
| Msa0079250 | Msa0170560 | -0.811102 | 8.281061e-51 | -8.615850e-47 |
| Msa0114540 | Msa0170560 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0143080 | Msa0170560 | -0.862267 | 5.720821e-64 | -8.615850e-47 |
| Msa0168640 | Msa0170560 | 0.801822 | 7.510840e-49 | -8.615850e-47 |
| Msa0169620 | Msa0170560 | -0.818773 | 1.645916e-52 | -8.615850e-47 |
| Msa0170560 | Msa0172960 | 0.818713 | 1.698357e-52 | -8.615850e-47 |
| Msa0170560 | Msa0188680 | 0.819905 | 9.084419e-53 | -8.615850e-47 |
| Msa0170560 | Msa0194970 | -0.839269 | 1.752574e-57 | -8.615850e-47 |
| Msa0170560 | Msa0230550 | 0.811700 | 6.141003e-51 | -8.615850e-47 |
| Msa0170560 | Msa0236980 | -0.850617 | 1.512666e-60 | -8.615850e-47 |
| Msa0170560 | Msa0252180 | -0.800978 | 1.118410e-48 | -8.615850e-47 |
| Msa0170560 | Msa0270220 | 0.816265 | 6.044256e-52 | -8.615850e-47 |
| Msa0170560 | Msa0307830 | 0.819384 | 1.194915e-52 | -8.615850e-47 |
| Msa0170560 | Msa0328210 | -0.871107 | 8.792001e-67 | -8.615850e-47 |
| Msa0170560 | Msa0378080 | -0.806561 | 7.747765e-50 | -8.615850e-47 |
| Msa0170560 | Msa0465480 | 0.807530 | 4.832948e-50 | -8.615850e-47 |
| Msa0170560 | Msa0468160 | -0.816597 | 5.095393e-52 | -8.615850e-47 |
| Msa0170560 | Msa0469910 | 0.823418 | 1.400211e-53 | -8.615850e-47 |
| Msa0170560 | Msa0480320 | -0.815156 | 1.068059e-51 | -8.615850e-47 |
| Msa0170560 | Msa0482680 | -0.802106 | 6.566321e-49 | -8.615850e-47 |
| Msa0170560 | Msa0511320 | 0.812126 | 4.960440e-51 | -8.615850e-47 |
| Msa0170560 | Msa0518040 | -0.803010 | 4.275603e-49 | -8.615850e-47 |
| Msa0170560 | Msa0579290 | -0.810798 | 9.636777e-51 | -8.615850e-47 |
| Msa0170560 | Msa0579390 | -0.807494 | 4.918501e-50 | -8.615850e-47 |
| Msa0170560 | Msa0590680 | -0.806483 | 8.048576e-50 | -8.615850e-47 |
| Msa0170560 | Msa0591060 | -0.802749 | 4.840324e-49 | -8.615850e-47 |
| Msa0170560 | Msa0591770 | -0.813486 | 2.498382e-51 | -8.615850e-47 |
| Msa0170560 | Msa0607290 | 0.819832 | 9.440553e-53 | -8.615850e-47 |
| Msa0170560 | Msa0618010 | -0.806560 | 7.751642e-50 | -8.615850e-47 |
| Msa0170560 | Msa0669850 | -0.807937 | 3.959652e-50 | -8.615850e-47 |
| Msa0170560 | Msa0725920 | -0.801102 | 1.055124e-48 | -8.615850e-47 |
| Msa0170560 | Msa0748460 | 0.874937 | 4.568548e-68 | -8.615850e-47 |
| Msa0170560 | Msa0775260 | -0.854164 | 1.477255e-61 | -8.615850e-47 |
| Msa0170560 | Msa0790390 | 0.830554 | 2.751086e-55 | -8.615850e-47 |
| Msa0170560 | Msa0852730 | -0.831738 | 1.408082e-55 | -8.615850e-47 |
| Msa0170560 | Msa0853170 | -0.839394 | 1.626730e-57 | -8.615850e-47 |
| Msa0170560 | Msa0880210 | 0.844461 | 7.453786e-59 | -8.615850e-47 |
| Msa0170560 | Msa1015060 | -0.824449 | 8.022130e-54 | -8.615850e-47 |
| Msa0170560 | Msa1069660 | 0.801321 | 9.516206e-49 | -8.615850e-47 |
| Msa0170560 | Msa1092820 | -0.806021 | 1.006970e-49 | -8.615850e-47 |
| Msa0170560 | Msa1126120 | 0.829418 | 5.205801e-55 | -8.615850e-47 |
| Msa0170560 | Msa1130210 | 0.824333 | 8.541657e-54 | -8.615850e-47 |
| Msa0170560 | Msa1171770 | 0.839733 | 1.328145e-57 | -8.615850e-47 |
| Msa0170560 | Msa1193950 | 0.816037 | 6.797739e-52 | -8.615850e-47 |
| Msa0170560 | Msa1219110 | -0.806795 | 6.914973e-50 | -8.615850e-47 |
| Msa0170560 | Msa1237030 | -0.812153 | 4.892813e-51 | -8.615850e-47 |
| Msa0170560 | Msa1246370 | -0.814495 | 1.496531e-51 | -8.615850e-47 |
| Msa0170560 | Msa1337090 | -0.807484 | 4.942174e-50 | -8.615850e-47 |
| Msa0170560 | Msa1362510 | -0.814524 | 1.474736e-51 | -8.615850e-47 |
| Msa0170560 | Msa1373510 | -0.809181 | 2.148673e-50 | -8.615850e-47 |
| Msa0170560 | Msa1381130 | -0.800739 | 1.251500e-48 | -8.615850e-47 |
| Msa0170560 | Msa1382310 | -0.813546 | 2.423109e-51 | -8.615850e-47 |
| Msa0170560 | Msa1403580 | 0.828842 | 7.178632e-55 | -8.615850e-47 |
| Msa0170560 | Msa1403930 | 0.804269 | 2.342523e-49 | -8.615850e-47 |
| Msa0170560 | Msa1412080 | -0.801011 | 1.101205e-48 | -8.615850e-47 |
| Msa0170560 | Msa1432640 | -0.803109 | 4.078110e-49 | -8.615850e-47 |
| Msa0170560 | Msa1443290 | 0.828561 | 8.393638e-55 | -8.615850e-47 |
| Msa0170560 | Msa1444450 | -0.816365 | 5.742327e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170560 | MtrunA17_Chr1g0188131 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 6.63e-74 | 214 |
| Msa0170560 | MtrunA17_Chr1g0188161 | 79.817 | 109 | 18 | 3 | 1 | 106 | 1 | 108 | 1.63e-48 | 150 |
| Msa0170560 | MtrunA17_Chr1g0184941 | 53.846 | 104 | 47 | 1 | 3 | 106 | 7 | 109 | 7.01e-37 | 120 |
| Msa0170560 | MtrunA17_Chr1g0148341 | 40.217 | 92 | 52 | 2 | 16 | 105 | 35 | 125 | 4.77e-18 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170560 | AT3G63420.1 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
| Msa0170560 | AT3G63420.2 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
| Msa0170560 | AT3G22942.1 | 70.238 | 84 | 24 | 1 | 23 | 106 | 18 | 100 | 7.20e-32 | 108 |
| Msa0170560 | AT3G63420.3 | 56.842 | 95 | 40 | 1 | 12 | 106 | 45 | 138 | 1.23e-31 | 108 |
Find 71 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCCCATATAGGATTTA+AGG | 0.165452 | 1_4:-54722121 | None:intergenic |
| ATTACATGGTCAACACTTAA+TGG | 0.242126 | 1_4:+54719526 | Msa0170560:five_prime_UTR |
| CAGGACCAATCTCGAATTAA+AGG | 0.249997 | 1_4:-54722227 | None:intergenic |
| TGCAGCAGCCTTTGGAATCT+TGG | 0.250553 | 1_4:-54722158 | None:intergenic |
| AAATAAACTCACAAAATTTC+AGG | 0.285103 | 1_4:-54722246 | None:intergenic |
| GCAGCAGCCTTTGGAATCTT+GGG | 0.298135 | 1_4:-54722157 | None:intergenic |
| TTGGTCCCTTAAATCCTATA+TGG | 0.329222 | 1_4:+54722115 | Msa0170560:CDS |
| CAACTGGTTTGAAATAGTTA+AGG | 0.332083 | 1_4:+54722406 | Msa0170560:three_prime_UTR |
| CTGTTGTTTCTTTCATTACA+TGG | 0.337952 | 1_4:+54719512 | Msa0170560:five_prime_UTR |
| TAAATCCTATATGGGATAGA+TGG | 0.350762 | 1_4:+54722124 | Msa0170560:CDS |
| GATCATTTAAGAAATGTAAA+TGG | 0.351180 | 1_4:+54722369 | Msa0170560:three_prime_UTR |
| AAAGTGGGTCGTCGGGTTAT+CGG | 0.364117 | 1_4:-54719711 | None:intergenic |
| TTACATGGTCAACACTTAAT+GGG | 0.374330 | 1_4:+54719527 | Msa0170560:five_prime_UTR |
| GACAGAGAAAGAGACAGTTT+TGG | 0.379861 | 1_4:-54719463 | None:intergenic |
| AAACAACAGAGCGGGATCTA+TGG | 0.380122 | 1_4:-54719498 | None:intergenic |
| AACTGGTTTGAAATAGTTAA+GGG | 0.382241 | 1_4:+54722407 | Msa0170560:three_prime_UTR |
| CCAACATCTGCAGCAGCCTT+TGG | 0.388678 | 1_4:-54722166 | None:intergenic |
| TTGAAATAGTTAAGGGTTGA+AGG | 0.396529 | 1_4:+54722414 | Msa0170560:three_prime_UTR |
| AGGACCAATCTCGAATTAAA+GGG | 0.404517 | 1_4:-54722226 | None:intergenic |
| GAAGAAAGTGAGCGGGTTTG+AGG | 0.425851 | 1_4:-54719419 | None:intergenic |
| CTATCCCATATAGGATTTAA+GGG | 0.439135 | 1_4:-54722120 | None:intergenic |
| GCTAAGATTGTTTGTAGCAA+TGG | 0.445005 | 1_4:-54719658 | None:intergenic |
| TTCTGCTTTGACAGAACAGT+TGG | 0.445567 | 1_4:+54722096 | Msa0170560:intron |
| GGATACATGCTGAACTTAAA+CGG | 0.451608 | 1_4:+54719774 | Msa0170560:CDS |
| GAGCGGGATCTATGGTGGTT+TGG | 0.455036 | 1_4:-54719490 | None:intergenic |
| TCAAACCATCTATCCCATAT+AGG | 0.457946 | 1_4:-54722129 | None:intergenic |
| TACAATGGAAGTAATGGGTC+AGG | 0.462616 | 1_4:-54721981 | None:intergenic |
| GCTGGAAAAGCTTGAGAGGA+TGG | 0.463059 | 1_4:+54721817 | Msa0170560:CDS |
| AAATTCAATGTAGGAAGAGC+TGG | 0.464733 | 1_4:+54721799 | Msa0170560:intron |
| TGGTTAGAAGTGCGTTTGTT+TGG | 0.471868 | 1_4:-54719443 | None:intergenic |
| CCAAAGGCTGCTGCAGATGT+TGG | 0.474766 | 1_4:+54722166 | Msa0170560:CDS |
| ACTGAACAAAGTGGGTCGTC+GGG | 0.478830 | 1_4:-54719718 | None:intergenic |
| AAGAAAGTGAGCGGGTTTGA+GGG | 0.479219 | 1_4:-54719418 | None:intergenic |
| ATATGACCGGGGAATGTGAA+TGG | 0.479588 | 1_4:-54719556 | None:intergenic |
| CAGATACAAGAGGGAAACAT+AGG | 0.483669 | 1_4:+54719753 | Msa0170560:CDS |
| ACAAGAAACAAGGTACTTAG+AGG | 0.487565 | 1_4:+54719802 | Msa0170560:CDS |
| AATAGCTTGATGAAGCTAAA+GGG | 0.491263 | 1_4:-54719621 | None:intergenic |
| AAATAGCTTGATGAAGCTAA+AGG | 0.493185 | 1_4:-54719622 | None:intergenic |
| TGGTCCCTTAAATCCTATAT+GGG | 0.499485 | 1_4:+54722116 | Msa0170560:CDS |
| TGCTTGGCAATGTCGAGAAA+AGG | 0.501990 | 1_4:+54721958 | Msa0170560:CDS |
| ATATGGGATAGATGGTTTGA+AGG | 0.520251 | 1_4:+54722132 | Msa0170560:CDS |
| GGAGGGGTGAGTATCTCAAC+TGG | 0.521496 | 1_4:+54722390 | Msa0170560:three_prime_UTR |
| TGGGACCCATTCACATTCCC+CGG | 0.524059 | 1_4:+54719550 | Msa0170560:five_prime_UTR |
| GACTGAACAAAGTGGGTCGT+CGG | 0.531551 | 1_4:-54719719 | None:intergenic |
| CAGCAGCCTTTGGAATCTTG+GGG | 0.533463 | 1_4:-54722156 | None:intergenic |
| TTTCTTAAATGATCATCGAC+TGG | 0.535411 | 1_4:-54722360 | None:intergenic |
| TTAGCCTCAGAAAATGCAAT+CGG | 0.537051 | 1_4:+54719676 | Msa0170560:exon |
| ACATGCTGAACTTAAACGGT+TGG | 0.538744 | 1_4:+54719778 | Msa0170560:CDS |
| TATGACCGGGGAATGTGAAT+GGG | 0.539487 | 1_4:-54719555 | None:intergenic |
| GGATTTGTAGTGTAGAATGT+GGG | 0.540585 | 1_4:-54719397 | None:intergenic |
| GTTTGGTGAAGAAAGTGAGC+GGG | 0.543461 | 1_4:-54719426 | None:intergenic |
| CCTCAGAAAATGCAATCGGA+TGG | 0.564403 | 1_4:+54719680 | Msa0170560:exon |
| AATGAAAGAAACAACAGAGC+GGG | 0.566645 | 1_4:-54719506 | None:intergenic |
| AAGAGCTGGAAAAGCTTGAG+AGG | 0.574159 | 1_4:+54721813 | Msa0170560:CDS |
| CATTTAAGAAATGTAAATGG+AGG | 0.575476 | 1_4:+54722372 | Msa0170560:three_prime_UTR |
| ATTTAAGAAATGTAAATGGA+GGG | 0.576481 | 1_4:+54722373 | Msa0170560:three_prime_UTR |
| TTTAAGAAATGTAAATGGAG+GGG | 0.587286 | 1_4:+54722374 | Msa0170560:three_prime_UTR |
| CATGGTCAACACTTAATGGG+TGG | 0.588204 | 1_4:+54719530 | Msa0170560:five_prime_UTR |
| ATGGTCAACACTTAATGGGT+GGG | 0.597116 | 1_4:+54719531 | Msa0170560:five_prime_UTR |
| GGGATTTGTAGTGTAGAATG+TGG | 0.597864 | 1_4:-54719398 | None:intergenic |
| CTCAGAAAATGCAATCGGAT+GGG | 0.599299 | 1_4:+54719681 | Msa0170560:exon |
| GATTTGTAGTGTAGAATGTG+GGG | 0.624298 | 1_4:-54719396 | None:intergenic |
| AAGACTGAGACTGAACAAAG+TGG | 0.627696 | 1_4:-54719727 | None:intergenic |
| CAACAGAGCGGGATCTATGG+TGG | 0.631039 | 1_4:-54719495 | None:intergenic |
| GAAGGACCCCAAGATTCCAA+AGG | 0.632878 | 1_4:+54722150 | Msa0170560:CDS |
| AGACTGAGACTGAACAAAGT+GGG | 0.647300 | 1_4:-54719726 | None:intergenic |
| ATTTGTAGTGTAGAATGTGG+GGG | 0.661830 | 1_4:-54719395 | None:intergenic |
| TTTGTAGTGTAGAATGTGGG+GGG | 0.665344 | 1_4:-54719394 | None:intergenic |
| TGTTTGGTGAAGAAAGTGAG+CGG | 0.672165 | 1_4:-54719427 | None:intergenic |
| AACGGTTGGAACAAGAAACA+AGG | 0.682214 | 1_4:+54719792 | Msa0170560:CDS |
| TAATGAAAGAAACAACAGAG+CGG | 0.759258 | 1_4:-54719507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTCTTTTTTTAATAATT+GGG | - | chr1_4:54720563-54720582 | None:intergenic | 10.0% |
| !!! | AAAGTTCTTTTTTTAATAAT+TGG | - | chr1_4:54720564-54720583 | None:intergenic | 10.0% |
| !!! | TAAAAAAAGAACTTTTTTTT+TGG | + | chr1_4:54720569-54720588 | Msa0170560:intron | 10.0% |
| !!! | AAAAAAAGAACTTTTTTTTT+GGG | + | chr1_4:54720570-54720589 | Msa0170560:intron | 10.0% |
| !!! | TCAATTAAAGCTAAATTTTA+AGG | - | chr1_4:54719981-54720000 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTGTTTTTAGTT+TGG | + | chr1_4:54720026-54720045 | Msa0170560:intron | 15.0% |
| !!! | AAAAAAGAACTTTTTTTTTG+GGG | + | chr1_4:54720571-54720590 | Msa0170560:intron | 15.0% |
| !! | AAAATAATCTTAACTAGTTA+AGG | - | chr1_4:54721586-54721605 | None:intergenic | 15.0% |
| !! | TTACAAAAGTAATTTATCAA+AGG | - | chr1_4:54722058-54722077 | None:intergenic | 15.0% |
| !! | TTAACGAGTAATAGTAAAAT+GGG | + | chr1_4:54719933-54719952 | Msa0170560:intron | 20.0% |
| !!! | TTTAGCTTTAATTGATTTCT+TGG | + | chr1_4:54719986-54720005 | Msa0170560:intron | 20.0% |
| !!! | TTAGCTTTAATTGATTTCTT+GGG | + | chr1_4:54719987-54720006 | Msa0170560:intron | 20.0% |
| !!! | TCAACTTTTGATAGTTAAAA+GGG | + | chr1_4:54720159-54720178 | Msa0170560:intron | 20.0% |
| !!! | AATTTTTAGTGACTATGTTA+TGG | + | chr1_4:54720279-54720298 | Msa0170560:intron | 20.0% |
| !!! | TAAAATTTTGTTGTGTTTGT+TGG | - | chr1_4:54721132-54721151 | None:intergenic | 20.0% |
| !! | TTGATCTTATTAAAGATTCA+GGG | + | chr1_4:54721158-54721177 | Msa0170560:intron | 20.0% |
| !! | ATTCACTATAAATTCAATGT+AGG | + | chr1_4:54721790-54721809 | Msa0170560:intron | 20.0% |
| !! | AAATAAACTCACAAAATTTC+AGG | - | chr1_4:54722249-54722268 | None:intergenic | 20.0% |
| !! | GATCATTTAAGAAATGTAAA+TGG | + | chr1_4:54722369-54722388 | Msa0170560:three_prime_UTR | 20.0% |
| !! | ATTTAAGAAATGTAAATGGA+GGG | + | chr1_4:54722373-54722392 | Msa0170560:three_prime_UTR | 20.0% |
| ! | TTGAAGTGAAAAAATATGAC+CGG | - | chr1_4:54719572-54719591 | None:intergenic | 25.0% |
| ! | GTTAACGAGTAATAGTAAAA+TGG | + | chr1_4:54719932-54719951 | Msa0170560:intron | 25.0% |
| ! | ACTGAAAAGTAATGACAATT+TGG | + | chr1_4:54720065-54720084 | Msa0170560:intron | 25.0% |
| ! | CTGAAAAGTAATGACAATTT+GGG | + | chr1_4:54720066-54720085 | Msa0170560:intron | 25.0% |
| ! | TGAAAAGTAATGACAATTTG+GGG | + | chr1_4:54720067-54720086 | Msa0170560:intron | 25.0% |
| !!! | GTCAACTTTTGATAGTTAAA+AGG | + | chr1_4:54720158-54720177 | Msa0170560:intron | 25.0% |
| ! | ATGAGTAGAACAAATATTCA+AGG | - | chr1_4:54720244-54720263 | None:intergenic | 25.0% |
| ! | TTTGTAATAACAGCAACATA+AGG | + | chr1_4:54720718-54720737 | Msa0170560:intron | 25.0% |
| ! | AGAAAGAAAGACGAAAATTA+AGG | - | chr1_4:54720788-54720807 | None:intergenic | 25.0% |
| ! | CTTGATCTTATTAAAGATTC+AGG | + | chr1_4:54721157-54721176 | Msa0170560:intron | 25.0% |
| ! | GCAAATTACGAATTAATCAA+GGG | - | chr1_4:54721462-54721481 | None:intergenic | 25.0% |
| !!! | CATTCATTTCTGAGATATAT+AGG | + | chr1_4:54721654-54721673 | Msa0170560:intron | 25.0% |
| !! | ATCATCTTTTCTGTAAAAAG+TGG | - | chr1_4:54721702-54721721 | None:intergenic | 25.0% |
| !! | TTTTACAGAAAAGATGATTG+TGG | + | chr1_4:54721704-54721723 | Msa0170560:intron | 25.0% |
| ! | TCAAATTTGATCAGACATTA+TGG | - | chr1_4:54721893-54721912 | None:intergenic | 25.0% |
| ! | ATTAAGTTTGAATTTCTGTC+TGG | + | chr1_4:54721918-54721937 | Msa0170560:intron | 25.0% |
| !! | GATTTTACAATGGAAGTAAT+GGG | - | chr1_4:54721989-54722008 | None:intergenic | 25.0% |
| !! | AGATTTTACAATGGAAGTAA+TGG | - | chr1_4:54721990-54722009 | None:intergenic | 25.0% |
| ! | CATTTAAGAAATGTAAATGG+AGG | + | chr1_4:54722372-54722391 | Msa0170560:three_prime_UTR | 25.0% |
| ! | TTTAAGAAATGTAAATGGAG+GGG | + | chr1_4:54722374-54722393 | Msa0170560:three_prime_UTR | 25.0% |
| !!! | AACTGGTTTGAAATAGTTAA+GGG | + | chr1_4:54722407-54722426 | Msa0170560:three_prime_UTR | 25.0% |
| TAATGAAAGAAACAACAGAG+CGG | - | chr1_4:54719510-54719529 | None:intergenic | 30.0% | |
| !! | CTGTTGTTTCTTTCATTACA+TGG | + | chr1_4:54719512-54719531 | Msa0170560:five_prime_UTR | 30.0% |
| ATTACATGGTCAACACTTAA+TGG | + | chr1_4:54719526-54719545 | Msa0170560:five_prime_UTR | 30.0% | |
| TTACATGGTCAACACTTAAT+GGG | + | chr1_4:54719527-54719546 | Msa0170560:five_prime_UTR | 30.0% | |
| TGAAGTGAAAAAATATGACC+GGG | - | chr1_4:54719571-54719590 | None:intergenic | 30.0% | |
| AATAGCTTGATGAAGCTAAA+GGG | - | chr1_4:54719624-54719643 | None:intergenic | 30.0% | |
| AAATAGCTTGATGAAGCTAA+AGG | - | chr1_4:54719625-54719644 | None:intergenic | 30.0% | |
| !!! | AGTCTTTTTCAGATACAAGA+GGG | + | chr1_4:54719744-54719763 | Msa0170560:CDS | 30.0% |
| AAGAACAAAACTCCAAAACA+TGG | - | chr1_4:54719872-54719891 | None:intergenic | 30.0% | |
| ! | TTCCATGTACTTCAAGTTTA+AGG | + | chr1_4:54720136-54720155 | Msa0170560:intron | 30.0% |
| ! | ATTCGTCTTGTTCTAACATT+TGG | - | chr1_4:54720392-54720411 | None:intergenic | 30.0% |
| ACGAAAATTAAGGCGAAAAA+TGG | - | chr1_4:54720778-54720797 | None:intergenic | 30.0% | |
| TGTGCCATCAAACAAAAAAA+TGG | + | chr1_4:54720973-54720992 | Msa0170560:intron | 30.0% | |
| GTGCCATCAAACAAAAAAAT+GGG | + | chr1_4:54720974-54720993 | Msa0170560:intron | 30.0% | |
| CTTGTGTAGAAAATATGGTA+AGG | - | chr1_4:54721074-54721093 | None:intergenic | 30.0% | |
| ! | TACCATATTTTCTACACAAG+AGG | + | chr1_4:54721074-54721093 | Msa0170560:intron | 30.0% |
| GGATAGACATTTATCAGTAA+TGG | - | chr1_4:54721207-54721226 | None:intergenic | 30.0% | |
| AATTACGAATTAATCAAGGG+AGG | - | chr1_4:54721459-54721478 | None:intergenic | 30.0% | |
| GGCAAATTACGAATTAATCA+AGG | - | chr1_4:54721463-54721482 | None:intergenic | 30.0% | |
| ! | ATGTCTGAAGTTGATTGATA+AGG | + | chr1_4:54721487-54721506 | Msa0170560:intron | 30.0% |
| ATAAGCCAGTTACCTAAAAT+TGG | - | chr1_4:54721516-54721535 | None:intergenic | 30.0% | |
| !!! | TATATAGGTTGTTTTTCCAG+CGG | + | chr1_4:54721669-54721688 | Msa0170560:intron | 30.0% |
| ! | TCTTTTCTGTAAAAAGTGGT+TGG | - | chr1_4:54721698-54721717 | None:intergenic | 30.0% |
| TAGCATTAAACACTAGAAGT+TGG | - | chr1_4:54722019-54722038 | None:intergenic | 30.0% | |
| CTATCCCATATAGGATTTAA+GGG | - | chr1_4:54722123-54722142 | None:intergenic | 30.0% | |
| TCTATCCCATATAGGATTTA+AGG | - | chr1_4:54722124-54722143 | None:intergenic | 30.0% | |
| TAAATCCTATATGGGATAGA+TGG | + | chr1_4:54722124-54722143 | Msa0170560:CDS | 30.0% | |
| AGGGAAAAAAACGTAGAATT+TGG | - | chr1_4:54722210-54722229 | None:intergenic | 30.0% | |
| ! | TTTTCCCTTTAATTCGAGAT+TGG | + | chr1_4:54722222-54722241 | Msa0170560:three_prime_UTR | 30.0% |
| TTTCTTAAATGATCATCGAC+TGG | - | chr1_4:54722363-54722382 | None:intergenic | 30.0% | |
| !! | CAACTGGTTTGAAATAGTTA+AGG | + | chr1_4:54722406-54722425 | Msa0170560:three_prime_UTR | 30.0% |
| ATTTGTAGTGTAGAATGTGG+GGG | - | chr1_4:54719398-54719417 | None:intergenic | 35.0% | |
| GATTTGTAGTGTAGAATGTG+GGG | - | chr1_4:54719399-54719418 | None:intergenic | 35.0% | |
| GGATTTGTAGTGTAGAATGT+GGG | - | chr1_4:54719400-54719419 | None:intergenic | 35.0% | |
| AATGAAAGAAACAACAGAGC+GGG | - | chr1_4:54719509-54719528 | None:intergenic | 35.0% | |
| GAAGTGAAAAAATATGACCG+GGG | - | chr1_4:54719570-54719589 | None:intergenic | 35.0% | |
| GCTAAGATTGTTTGTAGCAA+TGG | - | chr1_4:54719661-54719680 | None:intergenic | 35.0% | |
| TTAGCCTCAGAAAATGCAAT+CGG | + | chr1_4:54719676-54719695 | Msa0170560:exon | 35.0% | |
| !!! | CAGTCTTTTTCAGATACAAG+AGG | + | chr1_4:54719743-54719762 | Msa0170560:CDS | 35.0% |
| GGATACATGCTGAACTTAAA+CGG | + | chr1_4:54719774-54719793 | Msa0170560:CDS | 35.0% | |
| ! | ACAAGAAACAAGGTACTTAG+AGG | + | chr1_4:54719802-54719821 | Msa0170560:CDS | 35.0% |
| ! | TCTTCATCCTTACCATGTTT+TGG | + | chr1_4:54719857-54719876 | Msa0170560:intron | 35.0% |
| CAAAACTCCAAAACATGGTA+AGG | - | chr1_4:54719867-54719886 | None:intergenic | 35.0% | |
| ATTTCTTGGGATACTCTTCT+GGG | + | chr1_4:54720000-54720019 | Msa0170560:intron | 35.0% | |
| GGGAATTATGTTGTTGTGAT+AGG | + | chr1_4:54720087-54720106 | Msa0170560:intron | 35.0% | |
| TTATGTTGTTGTGATAGGAG+AGG | + | chr1_4:54720092-54720111 | Msa0170560:intron | 35.0% | |
| !! | ATAGGAGAGGTACTTGTAAT+TGG | + | chr1_4:54720105-54720124 | Msa0170560:intron | 35.0% |
| !! | TAGGAGAGGTACTTGTAATT+GGG | + | chr1_4:54720106-54720125 | Msa0170560:intron | 35.0% |
| AACTTGAAGTACATGGAAGA+TGG | - | chr1_4:54720134-54720153 | None:intergenic | 35.0% | |
| GACCTTAAACTTGAAGTACA+TGG | - | chr1_4:54720141-54720160 | None:intergenic | 35.0% | |
| GACAAAACATTTGCAAGATG+AGG | - | chr1_4:54720222-54720241 | None:intergenic | 35.0% | |
| ACAAAGTCTCTCATAGCAAT+GGG | - | chr1_4:54720610-54720629 | None:intergenic | 35.0% | |
| CCTCAAATTGTTCAAAAGTC+AGG | - | chr1_4:54720854-54720873 | None:intergenic | 35.0% | |
| ! | CCTGACTTTTGAACAATTTG+AGG | + | chr1_4:54720851-54720870 | Msa0170560:intron | 35.0% |
| GTAGTTGCGTTATGCTTATT+TGG | + | chr1_4:54720894-54720913 | Msa0170560:intron | 35.0% | |
| !!! | CTGCCCATTTTTTTGTTTGA+TGG | - | chr1_4:54720980-54720999 | None:intergenic | 35.0% |
| AGCCTCTTGTGTAGAAAATA+TGG | - | chr1_4:54721079-54721098 | None:intergenic | 35.0% | |
| ! | AGGGTCTTATGAAAGATTCA+GGG | + | chr1_4:54721105-54721124 | Msa0170560:intron | 35.0% |
| GGGTCTTGATAAATTAGTGT+TGG | + | chr1_4:54721178-54721197 | Msa0170560:intron | 35.0% | |
| TCTAGATGACATGTTCTGTT+TGG | - | chr1_4:54721228-54721247 | None:intergenic | 35.0% | |
| TACCTGCGTTGGAATATTTA+AGG | + | chr1_4:54721260-54721279 | Msa0170560:intron | 35.0% | |
| AACCTTAAATATTCCAACGC+AGG | - | chr1_4:54721265-54721284 | None:intergenic | 35.0% | |
| ! | CAAGAACTCAAAAAAGGTGT+TGG | - | chr1_4:54721310-54721329 | None:intergenic | 35.0% |
| GCAGAACAAGAACTCAAAAA+AGG | - | chr1_4:54721316-54721335 | None:intergenic | 35.0% | |
| !!! | TTTTGAGTTCTTGTTCTGCT+CGG | + | chr1_4:54721317-54721336 | Msa0170560:intron | 35.0% |
| ! | TCCATTGGTGTTTAAGTCAA+CGG | - | chr1_4:54721395-54721414 | None:intergenic | 35.0% |
| TATTTGCATACTGTGTCCAT+TGG | - | chr1_4:54721410-54721429 | None:intergenic | 35.0% | |
| AGGAGGGAACTGAAAAATTA+TGG | - | chr1_4:54721439-54721458 | None:intergenic | 35.0% | |
| ! | TCTGAAGTTGATTGATAAGG+TGG | + | chr1_4:54721490-54721509 | Msa0170560:intron | 35.0% |
| ! | TTGATAAGGTGGCCAATTTT+AGG | + | chr1_4:54721501-54721520 | Msa0170560:intron | 35.0% |
| CAGATAATTAGTGCTCATGA+TGG | - | chr1_4:54721613-54721632 | None:intergenic | 35.0% | |
| TCATGAGCACTAATTATCTG+TGG | + | chr1_4:54721613-54721632 | Msa0170560:intron | 35.0% | |
| TTTCTGTAAAAAGTGGTTGG+AGG | - | chr1_4:54721695-54721714 | None:intergenic | 35.0% | |
| AAATTCAATGTAGGAAGAGC+TGG | + | chr1_4:54721799-54721818 | Msa0170560:intron | 35.0% | |
| ! | TGGCATACGAGATTTTACAA+TGG | - | chr1_4:54721999-54722018 | None:intergenic | 35.0% |
| TTGGTCCCTTAAATCCTATA+TGG | + | chr1_4:54722115-54722134 | Msa0170560:CDS | 35.0% | |
| TGGTCCCTTAAATCCTATAT+GGG | + | chr1_4:54722116-54722135 | Msa0170560:CDS | 35.0% | |
| TCAAACCATCTATCCCATAT+AGG | - | chr1_4:54722132-54722151 | None:intergenic | 35.0% | |
| ATATGGGATAGATGGTTTGA+AGG | + | chr1_4:54722132-54722151 | Msa0170560:CDS | 35.0% | |
| AGGACCAATCTCGAATTAAA+GGG | - | chr1_4:54722229-54722248 | None:intergenic | 35.0% | |
| TTTGTAGTGTAGAATGTGGG+GGG | - | chr1_4:54719397-54719416 | None:intergenic | 40.0% | |
| GGGATTTGTAGTGTAGAATG+TGG | - | chr1_4:54719401-54719420 | None:intergenic | 40.0% | |
| ! | TGTTTGGTGAAGAAAGTGAG+CGG | - | chr1_4:54719430-54719449 | None:intergenic | 40.0% |
| ! | TGGTTAGAAGTGCGTTTGTT+TGG | - | chr1_4:54719446-54719465 | None:intergenic | 40.0% |
| ! | GACAGAGAAAGAGACAGTTT+TGG | - | chr1_4:54719466-54719485 | None:intergenic | 40.0% |
| ! | ATGGTCAACACTTAATGGGT+GGG | + | chr1_4:54719531-54719550 | Msa0170560:five_prime_UTR | 40.0% |
| CTCAGAAAATGCAATCGGAT+GGG | + | chr1_4:54719681-54719700 | Msa0170560:exon | 40.0% | |
| AGACTGAGACTGAACAAAGT+GGG | - | chr1_4:54719729-54719748 | None:intergenic | 40.0% | |
| AAGACTGAGACTGAACAAAG+TGG | - | chr1_4:54719730-54719749 | None:intergenic | 40.0% | |
| CAGATACAAGAGGGAAACAT+AGG | + | chr1_4:54719753-54719772 | Msa0170560:CDS | 40.0% | |
| ACATGCTGAACTTAAACGGT+TGG | + | chr1_4:54719778-54719797 | Msa0170560:CDS | 40.0% | |
| AACGGTTGGAACAAGAAACA+AGG | + | chr1_4:54719792-54719811 | Msa0170560:CDS | 40.0% | |
| ! | GAAACAAGGTACTTAGAGGT+TGG | + | chr1_4:54719806-54719825 | Msa0170560:intron | 40.0% |
| GATTTCTTGGGATACTCTTC+TGG | + | chr1_4:54719999-54720018 | Msa0170560:intron | 40.0% | |
| !! | AGGAGAGGTACTTGTAATTG+GGG | + | chr1_4:54720107-54720126 | Msa0170560:intron | 40.0% |
| !!! | CTTTTTTTTTGGGGTAGCCA+AGG | + | chr1_4:54720580-54720599 | Msa0170560:intron | 40.0% |
| CAAAGTCTCTCATAGCAATG+GGG | - | chr1_4:54720609-54720628 | None:intergenic | 40.0% | |
| GACAAAGTCTCTCATAGCAA+TGG | - | chr1_4:54720611-54720630 | None:intergenic | 40.0% | |
| GAGACTTGATGTTTGACGTT+TGG | + | chr1_4:54720818-54720837 | Msa0170560:intron | 40.0% | |
| ! | GTCTCTTTTGCTCACTCTAT+AGG | - | chr1_4:54720926-54720945 | None:intergenic | 40.0% |
| GCACATGTTTGTATGCACAT+TGG | + | chr1_4:54720949-54720968 | Msa0170560:intron | 40.0% | |
| GTTGCGTACAAAAGACCAAA+TGG | - | chr1_4:54721052-54721071 | None:intergenic | 40.0% | |
| CTGAATCTTTCATAAGACCC+TGG | - | chr1_4:54721106-54721125 | None:intergenic | 40.0% | |
| ! | CAGGGTCTTATGAAAGATTC+AGG | + | chr1_4:54721104-54721123 | Msa0170560:intron | 40.0% |
| !! | AACTCAAAAAAGGTGTTGGC+AGG | - | chr1_4:54721306-54721325 | None:intergenic | 40.0% |
| TTCTTGTTCTGCTCGGTTAA+GGG | + | chr1_4:54721324-54721343 | Msa0170560:intron | 40.0% | |
| GGGGATTTGAGAAACATCAA+TGG | - | chr1_4:54721368-54721387 | None:intergenic | 40.0% | |
| ACGAATTAATCAAGGGAGGA+GGG | - | chr1_4:54721455-54721474 | None:intergenic | 40.0% | |
| TACGAATTAATCAAGGGAGG+AGG | - | chr1_4:54721456-54721475 | None:intergenic | 40.0% | |
| CAATCAACTTCAGACATTGC+TGG | - | chr1_4:54721484-54721503 | None:intergenic | 40.0% | |
| ! | AACTGGCTTATATCAGTCGT+TGG | + | chr1_4:54721525-54721544 | Msa0170560:intron | 40.0% |
| TGAGCACTAATTATCTGTGG+AGG | + | chr1_4:54721616-54721635 | Msa0170560:intron | 40.0% | |
| !! | TACAATGGAAGTAATGGGTC+AGG | - | chr1_4:54721984-54722003 | None:intergenic | 40.0% |
| TTCTGCTTTGACAGAACAGT+TGG | + | chr1_4:54722096-54722115 | Msa0170560:intron | 40.0% | |
| CAGGACCAATCTCGAATTAA+AGG | - | chr1_4:54722230-54722249 | None:intergenic | 40.0% | |
| ! | AAGAAAGTGAGCGGGTTTGA+GGG | - | chr1_4:54719421-54719440 | None:intergenic | 45.0% |
| ! | GTTTGGTGAAGAAAGTGAGC+GGG | - | chr1_4:54719429-54719448 | None:intergenic | 45.0% |
| AAACAACAGAGCGGGATCTA+TGG | - | chr1_4:54719501-54719520 | None:intergenic | 45.0% | |
| CATGGTCAACACTTAATGGG+TGG | + | chr1_4:54719530-54719549 | Msa0170560:five_prime_UTR | 45.0% | |
| TATGACCGGGGAATGTGAAT+GGG | - | chr1_4:54719558-54719577 | None:intergenic | 45.0% | |
| ATATGACCGGGGAATGTGAA+TGG | - | chr1_4:54719559-54719578 | None:intergenic | 45.0% | |
| ! | CCATCCGATTGCATTTTCTG+AGG | - | chr1_4:54719683-54719702 | None:intergenic | 45.0% |
| CCTCAGAAAATGCAATCGGA+TGG | + | chr1_4:54719680-54719699 | Msa0170560:exon | 45.0% | |
| GCTATGAGAGACTTTGTCTC+TGG | + | chr1_4:54720613-54720632 | Msa0170560:intron | 45.0% | |
| ! | AGAGACTTTGTCTCTGGTTC+AGG | + | chr1_4:54720619-54720638 | Msa0170560:intron | 45.0% |
| ! | GAGACTTTGTCTCTGGTTCA+GGG | + | chr1_4:54720620-54720639 | Msa0170560:intron | 45.0% |
| ! | AGACTTTGTCTCTGGTTCAG+GGG | + | chr1_4:54720621-54720640 | Msa0170560:intron | 45.0% |
| ! | GGATGAGTTTTGCTGAGACT+TGG | + | chr1_4:54720872-54720891 | Msa0170560:intron | 45.0% |
| ! | TACACAAGAGGCTGTTTCCA+GGG | + | chr1_4:54721086-54721105 | Msa0170560:intron | 45.0% |
| TGATGTGACATTACCTGCGT+TGG | + | chr1_4:54721249-54721268 | Msa0170560:intron | 45.0% | |
| GTTCTTGTTCTGCTCGGTTA+AGG | + | chr1_4:54721323-54721342 | Msa0170560:intron | 45.0% | |
| TGTTTAAGTCAACGGCACAG+GGG | - | chr1_4:54721387-54721406 | None:intergenic | 45.0% | |
| GTGTTTAAGTCAACGGCACA+GGG | - | chr1_4:54721388-54721407 | None:intergenic | 45.0% | |
| !! | GCCGTTGACTTAAACACCAA+TGG | + | chr1_4:54721391-54721410 | Msa0170560:intron | 45.0% |
| !! | GGTGGCCAATTTTAGGTAAC+TGG | + | chr1_4:54721508-54721527 | Msa0170560:intron | 45.0% |
| AAGAGCTGGAAAAGCTTGAG+AGG | + | chr1_4:54721813-54721832 | Msa0170560:CDS | 45.0% | |
| !!! | TGTCTGGTGTTTGTTTTGCC+AGG | + | chr1_4:54721934-54721953 | Msa0170560:intron | 45.0% |
| !!! | GTTTGTTTTGCCAGGATGCT+TGG | + | chr1_4:54721942-54721961 | Msa0170560:intron | 45.0% |
| TGCTTGGCAATGTCGAGAAA+AGG | + | chr1_4:54721958-54721977 | Msa0170560:CDS | 45.0% | |
| GTAGAATGTGGGGGGTGAAA+AGG | - | chr1_4:54719389-54719408 | None:intergenic | 50.0% | |
| ! | GAAGAAAGTGAGCGGGTTTG+AGG | - | chr1_4:54719422-54719441 | None:intergenic | 50.0% |
| AAAGTGGGTCGTCGGGTTAT+CGG | - | chr1_4:54719714-54719733 | None:intergenic | 50.0% | |
| ACTGAACAAAGTGGGTCGTC+GGG | - | chr1_4:54719721-54719740 | None:intergenic | 50.0% | |
| GACTGAACAAAGTGGGTCGT+CGG | - | chr1_4:54719722-54719741 | None:intergenic | 50.0% | |
| AGTCTCTCATAGCAATGGGG+TGG | - | chr1_4:54720606-54720625 | None:intergenic | 50.0% | |
| TGGTTCAGGGGTCTTCACTT+AGG | + | chr1_4:54720633-54720652 | Msa0170560:intron | 50.0% | |
| !! | ATGCGGGAGCATTAGTGCAA+CGG | - | chr1_4:54721004-54721023 | None:intergenic | 50.0% |
| ACTAATGCTCCCGCATACTC+AGG | + | chr1_4:54721008-54721027 | Msa0170560:intron | 50.0% | |
| CTAATGCTCCCGCATACTCA+GGG | + | chr1_4:54721009-54721028 | Msa0170560:intron | 50.0% | |
| ! | CTACACAAGAGGCTGTTTCC+AGG | + | chr1_4:54721085-54721104 | Msa0170560:intron | 50.0% |
| GGTGTTTAAGTCAACGGCAC+AGG | - | chr1_4:54721389-54721408 | None:intergenic | 50.0% | |
| GCTGGAAAAGCTTGAGAGGA+TGG | + | chr1_4:54721817-54721836 | Msa0170560:CDS | 50.0% | |
| GAAGGACCCCAAGATTCCAA+AGG | + | chr1_4:54722150-54722169 | Msa0170560:CDS | 50.0% | |
| !! | CAGCAGCCTTTGGAATCTTG+GGG | - | chr1_4:54722159-54722178 | None:intergenic | 50.0% |
| !! | GCAGCAGCCTTTGGAATCTT+GGG | - | chr1_4:54722160-54722179 | None:intergenic | 50.0% |
| !! | TGCAGCAGCCTTTGGAATCT+TGG | - | chr1_4:54722161-54722180 | None:intergenic | 50.0% |
| GAGCGGGATCTATGGTGGTT+TGG | - | chr1_4:54719493-54719512 | None:intergenic | 55.0% | |
| CAACAGAGCGGGATCTATGG+TGG | - | chr1_4:54719498-54719517 | None:intergenic | 55.0% | |
| TGGGACCCATTCACATTCCC+CGG | + | chr1_4:54719550-54719569 | Msa0170560:five_prime_UTR | 55.0% | |
| TCATAGCAATGGGGTGGCCT+TGG | - | chr1_4:54720600-54720619 | None:intergenic | 55.0% | |
| !! | TGCGGGAGCATTAGTGCAAC+GGG | - | chr1_4:54721003-54721022 | None:intergenic | 55.0% |
| TTCCTGGACCCTGAGTATGC+GGG | - | chr1_4:54721020-54721039 | None:intergenic | 55.0% | |
| CTTCCTGGACCCTGAGTATG+CGG | - | chr1_4:54721021-54721040 | None:intergenic | 55.0% | |
| GCATACTCAGGGTCCAGGAA+GGG | + | chr1_4:54721020-54721039 | Msa0170560:intron | 55.0% | |
| CATACTCAGGGTCCAGGAAG+GGG | + | chr1_4:54721021-54721040 | Msa0170560:intron | 55.0% | |
| CAAATGGTGAGACCCCTTCC+TGG | - | chr1_4:54721036-54721055 | None:intergenic | 55.0% | |
| CAGGAAGGGGTCTCACCATT+TGG | + | chr1_4:54721034-54721053 | Msa0170560:intron | 55.0% | |
| AAAAAGTGGTTGGAGGCCGC+TGG | - | chr1_4:54721688-54721707 | None:intergenic | 55.0% | |
| CTCGACATTGCCAAGCATCC+TGG | - | chr1_4:54721955-54721974 | None:intergenic | 55.0% | |
| CCAACATCTGCAGCAGCCTT+TGG | - | chr1_4:54722169-54722188 | None:intergenic | 55.0% | |
| CCAAAGGCTGCTGCAGATGT+TGG | + | chr1_4:54722166-54722185 | Msa0170560:CDS | 55.0% | |
| GGAGGGGTGAGTATCTCAAC+TGG | + | chr1_4:54722390-54722409 | Msa0170560:three_prime_UTR | 55.0% | |
| CGCATACTCAGGGTCCAGGA+AGG | + | chr1_4:54721019-54721038 | Msa0170560:intron | 60.0% | |
| CTCCCGCATACTCAGGGTCC+AGG | + | chr1_4:54721015-54721034 | Msa0170560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 54719336 | 54722433 | 54719336 | ID=Msa0170560;Name=Msa0170560 |
| chr1_4 | mRNA | 54719336 | 54722433 | 54719336 | ID=Msa0170560-mRNA-1;Parent=Msa0170560;Name=Msa0170560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=353|1|1|1|1|1|4|236|106 |
| chr1_4 | exon | 54719336 | 54719823 | 54719336 | ID=Msa0170560-mRNA-1:exon:16352;Parent=Msa0170560-mRNA-1 |
| chr1_4 | exon | 54721812 | 54721864 | 54721812 | ID=Msa0170560-mRNA-1:exon:16353;Parent=Msa0170560-mRNA-1 |
| chr1_4 | exon | 54721956 | 54722000 | 54721956 | ID=Msa0170560-mRNA-1:exon:16354;Parent=Msa0170560-mRNA-1 |
| chr1_4 | exon | 54722110 | 54722433 | 54722110 | ID=Msa0170560-mRNA-1:exon:16355;Parent=Msa0170560-mRNA-1 |
| chr1_4 | five_prime_UTR | 54719336 | 54719688 | 54719336 | ID=Msa0170560-mRNA-1:five_prime_utr;Parent=Msa0170560-mRNA-1 |
| chr1_4 | CDS | 54719689 | 54719823 | 54719689 | ID=Msa0170560-mRNA-1:cds;Parent=Msa0170560-mRNA-1 |
| chr1_4 | CDS | 54721812 | 54721864 | 54721812 | ID=Msa0170560-mRNA-1:cds;Parent=Msa0170560-mRNA-1 |
| chr1_4 | CDS | 54721956 | 54722000 | 54721956 | ID=Msa0170560-mRNA-1:cds;Parent=Msa0170560-mRNA-1 |
| chr1_4 | CDS | 54722110 | 54722197 | 54722110 | ID=Msa0170560-mRNA-1:cds;Parent=Msa0170560-mRNA-1 |
| chr1_4 | three_prime_UTR | 54722198 | 54722433 | 54722198 | ID=Msa0170560-mRNA-1:three_prime_utr;Parent=Msa0170560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
