Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0078000 | sp|Q9FDX9|GG1_ARATH | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.42e-31 | 109 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0078000 | A0A396JVQ5 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 3.44e-70 | 214 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000490 | Msa0078000 | 0.816216 | 6.199041e-52 | -8.615850e-47 |
Msa0032840 | Msa0078000 | 0.812240 | 4.682923e-51 | -8.615850e-47 |
Msa0078000 | Msa0143080 | -0.829100 | 6.219384e-55 | -8.615850e-47 |
Msa0078000 | Msa0143240 | 0.801249 | 9.843711e-49 | -8.615850e-47 |
Msa0078000 | Msa0168640 | 0.813777 | 2.155973e-51 | -8.615850e-47 |
Msa0078000 | Msa0170560 | 0.943245 | 1.702907e-102 | -8.615850e-47 |
Msa0078000 | Msa0172960 | 0.801118 | 1.047021e-48 | -8.615850e-47 |
Msa0078000 | Msa0188680 | 0.809963 | 1.459128e-50 | -8.615850e-47 |
Msa0078000 | Msa0194970 | -0.821260 | 4.437094e-53 | -8.615850e-47 |
Msa0078000 | Msa0230550 | 0.809847 | 1.545364e-50 | -8.615850e-47 |
Msa0078000 | Msa0236980 | -0.826603 | 2.477490e-54 | -8.615850e-47 |
Msa0078000 | Msa0270220 | 0.816112 | 6.541612e-52 | -8.615850e-47 |
Msa0078000 | Msa0307830 | 0.818191 | 2.229434e-52 | -8.615850e-47 |
Msa0078000 | Msa0328210 | -0.850762 | 1.376660e-60 | -8.615850e-47 |
Msa0078000 | Msa0436280 | 0.809051 | 2.290225e-50 | -8.615850e-47 |
Msa0078000 | Msa0469910 | 0.819302 | 1.247360e-52 | -8.615850e-47 |
Msa0078000 | Msa0511320 | 0.812163 | 4.867201e-51 | -8.615850e-47 |
Msa0078000 | Msa0525340 | -0.806739 | 7.106930e-50 | -8.615850e-47 |
Msa0078000 | Msa0590680 | -0.800027 | 1.747070e-48 | -8.615850e-47 |
Msa0078000 | Msa0607290 | 0.803428 | 3.503092e-49 | -8.615850e-47 |
Msa0078000 | Msa0707390 | -0.807212 | 5.642955e-50 | -8.615850e-47 |
Msa0078000 | Msa0712310 | -0.815272 | 1.006432e-51 | -8.615850e-47 |
Msa0078000 | Msa0748460 | 0.831073 | 2.052592e-55 | -8.615850e-47 |
Msa0078000 | Msa0775260 | -0.814055 | 1.871912e-51 | -8.615850e-47 |
Msa0078000 | Msa0790390 | 0.823791 | 1.145375e-53 | -8.615850e-47 |
Msa0078000 | Msa0795030 | -0.804566 | 2.030966e-49 | -8.615850e-47 |
Msa0078000 | Msa0813720 | -0.800775 | 1.230116e-48 | -8.615850e-47 |
Msa0078000 | Msa0830990 | -0.816109 | 6.551531e-52 | -8.615850e-47 |
Msa0078000 | Msa0852730 | -0.813238 | 2.831602e-51 | -8.615850e-47 |
Msa0078000 | Msa0880210 | 0.819364 | 1.207619e-52 | -8.615850e-47 |
Msa0078000 | Msa0900630 | -0.811014 | 8.652295e-51 | -8.615850e-47 |
Msa0078000 | Msa0957450 | 0.803843 | 2.872237e-49 | -8.615850e-47 |
Msa0078000 | Msa0966720 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
Msa0078000 | Msa0974810 | -0.808196 | 3.487359e-50 | -8.615850e-47 |
Msa0078000 | Msa1001580 | -0.803099 | 4.097384e-49 | -8.615850e-47 |
Msa0078000 | Msa1069660 | 0.838437 | 2.877640e-57 | -8.615850e-47 |
Msa0078000 | Msa1080410 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
Msa0078000 | Msa1126120 | 0.870063 | 1.936119e-66 | -8.615850e-47 |
Msa0078000 | Msa1130210 | 0.803321 | 3.686627e-49 | -8.615850e-47 |
Msa0078000 | Msa1171770 | 0.849452 | 3.204520e-60 | -8.615850e-47 |
Msa0078000 | Msa1193950 | 0.816021 | 6.852983e-52 | -8.615850e-47 |
Msa0078000 | Msa1246530 | 0.802109 | 6.556609e-49 | -8.615850e-47 |
Msa0078000 | Msa1269580 | 0.813875 | 2.051159e-51 | -8.615850e-47 |
Msa0078000 | Msa1403580 | 0.832070 | 1.165624e-55 | -8.615850e-47 |
Msa0078000 | Msa1429360 | 0.807356 | 5.261134e-50 | -8.615850e-47 |
Msa0078000 | Msa1443290 | 0.825946 | 3.552781e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0078000 | MtrunA17_Chr1g0188131 | 95.413 | 109 | 2 | 1 | 1 | 106 | 1 | 109 | 6.63e-74 | 214 |
Msa0078000 | MtrunA17_Chr1g0188161 | 79.817 | 109 | 18 | 3 | 1 | 106 | 1 | 108 | 1.63e-48 | 150 |
Msa0078000 | MtrunA17_Chr1g0184941 | 53.846 | 104 | 47 | 1 | 3 | 106 | 7 | 109 | 7.01e-37 | 120 |
Msa0078000 | MtrunA17_Chr1g0148341 | 40.217 | 92 | 52 | 2 | 16 | 105 | 35 | 125 | 4.77e-18 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0078000 | AT3G63420.1 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
Msa0078000 | AT3G63420.2 | 56.842 | 95 | 40 | 1 | 12 | 106 | 5 | 98 | 2.46e-32 | 109 |
Msa0078000 | AT3G22942.1 | 70.238 | 84 | 24 | 1 | 23 | 106 | 18 | 100 | 7.20e-32 | 108 |
Msa0078000 | AT3G63420.3 | 56.842 | 95 | 40 | 1 | 12 | 106 | 45 | 138 | 1.23e-31 | 108 |
Find 70 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATCCCATATAGGATTTA+AGG | 0.165452 | 1_2:-55223616 | None:intergenic |
CAGGACCAAACTCGAATTAA+AGG | 0.240045 | 1_2:-55223722 | None:intergenic |
ATTACATGGTCAACACTTAA+TGG | 0.242126 | 1_2:+55221031 | Msa0078000:five_prime_UTR |
TGCAGCAGCCTTTGGAATCT+TGG | 0.250553 | 1_2:-55223653 | None:intergenic |
AAATAAACTCACAAAATTTC+AGG | 0.285103 | 1_2:-55223741 | None:intergenic |
GCAGCAGCCTTTGGAATCTT+GGG | 0.298135 | 1_2:-55223652 | None:intergenic |
TTGGTCCCTTAAATCCTATA+TGG | 0.329222 | 1_2:+55223610 | Msa0078000:CDS |
CAACTGGTTTGAAATAGTTA+AGG | 0.332083 | 1_2:+55223901 | Msa0078000:three_prime_UTR |
CTGTTGTTTCTTTCATTACA+TGG | 0.337952 | 1_2:+55221017 | Msa0078000:five_prime_UTR |
TAAATCCTATATGGGATAGA+TGG | 0.350762 | 1_2:+55223619 | Msa0078000:CDS |
GATCATTTAAGAAATGTAAA+TGG | 0.351180 | 1_2:+55223864 | Msa0078000:three_prime_UTR |
AAAGTGGGTCGTCGGGTTAT+CGG | 0.364117 | 1_2:-55221216 | None:intergenic |
TTACATGGTCAACACTTAAT+GGG | 0.374330 | 1_2:+55221032 | Msa0078000:five_prime_UTR |
AAACAACAGAGCGGAATCTA+TGG | 0.377414 | 1_2:-55221003 | None:intergenic |
GACAGAGAAAGAGACAGTTT+TGG | 0.379861 | 1_2:-55220968 | None:intergenic |
AACTGGTTTGAAATAGTTAA+GGG | 0.382241 | 1_2:+55223902 | Msa0078000:three_prime_UTR |
CCAACATCTGCAGCAGCCTT+TGG | 0.388678 | 1_2:-55223661 | None:intergenic |
TTGAAATAGTTAAGGGTTGA+AGG | 0.396529 | 1_2:+55223909 | Msa0078000:three_prime_UTR |
AGGACCAAACTCGAATTAAA+GGG | 0.414218 | 1_2:-55223721 | None:intergenic |
GAAGAAAGTGAGCGGGTTTG+AGG | 0.425851 | 1_2:-55220924 | None:intergenic |
CTATCCCATATAGGATTTAA+GGG | 0.439135 | 1_2:-55223615 | None:intergenic |
GCTAAGATTGTTTGTAGCAA+TGG | 0.445005 | 1_2:-55221163 | None:intergenic |
TTCTGCTTTGACAGAACAGT+TGG | 0.445567 | 1_2:+55223591 | Msa0078000:intron |
GGATACATGCTGAACTTAAA+CGG | 0.451608 | 1_2:+55221279 | Msa0078000:CDS |
GAGCGGAATCTATGGTGGTT+TGG | 0.455036 | 1_2:-55220995 | None:intergenic |
TCAAACCATCTATCCCATAT+AGG | 0.457946 | 1_2:-55223624 | None:intergenic |
TACAATGGAAGTAATGGGTC+AGG | 0.462616 | 1_2:-55223476 | None:intergenic |
GCTGGAAAAGCTTGAGAGGA+TGG | 0.463059 | 1_2:+55223314 | Msa0078000:CDS |
AAATTCAATGTAGGAAGAGC+TGG | 0.464733 | 1_2:+55223296 | Msa0078000:intron |
TGGTTAGAAGTGCGTTTGTT+TGG | 0.471868 | 1_2:-55220948 | None:intergenic |
CCAAAGGCTGCTGCAGATGT+TGG | 0.474766 | 1_2:+55223661 | Msa0078000:CDS |
ACTGAACAAAGTGGGTCGTC+GGG | 0.478830 | 1_2:-55221223 | None:intergenic |
AAGAAAGTGAGCGGGTTTGA+GGG | 0.479219 | 1_2:-55220923 | None:intergenic |
ATATGACCGGGGAATGTGAA+TGG | 0.479588 | 1_2:-55221061 | None:intergenic |
CAGATACAAGAGGGAAACAT+AGG | 0.483669 | 1_2:+55221258 | Msa0078000:CDS |
ACAAGAAACAAGGTACTTAG+AGG | 0.487565 | 1_2:+55221307 | Msa0078000:CDS |
AATAGCTTGATGAAGCTAAA+GGG | 0.491263 | 1_2:-55221126 | None:intergenic |
AAATAGCTTGATGAAGCTAA+AGG | 0.493185 | 1_2:-55221127 | None:intergenic |
TGGTCCCTTAAATCCTATAT+GGG | 0.499485 | 1_2:+55223611 | Msa0078000:CDS |
TGCTTGGCAATGTCGAGAAA+AGG | 0.501990 | 1_2:+55223453 | Msa0078000:CDS |
ATATGGGATAGATGGTTTGA+AGG | 0.520251 | 1_2:+55223627 | Msa0078000:CDS |
GGAGGGGTGAGTATCTCAAC+TGG | 0.521496 | 1_2:+55223885 | Msa0078000:three_prime_UTR |
TGGGACCCATTCACATTCCC+CGG | 0.524059 | 1_2:+55221055 | Msa0078000:five_prime_UTR |
GACTGAACAAAGTGGGTCGT+CGG | 0.531551 | 1_2:-55221224 | None:intergenic |
CAGCAGCCTTTGGAATCTTG+GGG | 0.533463 | 1_2:-55223651 | None:intergenic |
TTTCTTAAATGATCATCGAC+TGG | 0.535411 | 1_2:-55223855 | None:intergenic |
TTAGCCTCAGAAAATGCAAT+CGG | 0.537051 | 1_2:+55221181 | Msa0078000:exon |
ACATGCTGAACTTAAACGGT+TGG | 0.538744 | 1_2:+55221283 | Msa0078000:CDS |
TATGACCGGGGAATGTGAAT+GGG | 0.539487 | 1_2:-55221060 | None:intergenic |
GGATTTGTAGTGTAGAATGT+GGG | 0.540585 | 1_2:-55220902 | None:intergenic |
GTTTGGTGAAGAAAGTGAGC+GGG | 0.543461 | 1_2:-55220931 | None:intergenic |
CCTCAGAAAATGCAATCGGA+TGG | 0.564403 | 1_2:+55221185 | Msa0078000:exon |
AAGAGCTGGAAAAGCTTGAG+AGG | 0.574159 | 1_2:+55223310 | Msa0078000:CDS |
CATTTAAGAAATGTAAATGG+AGG | 0.575476 | 1_2:+55223867 | Msa0078000:three_prime_UTR |
ATTTAAGAAATGTAAATGGA+GGG | 0.576481 | 1_2:+55223868 | Msa0078000:three_prime_UTR |
TTTAAGAAATGTAAATGGAG+GGG | 0.587286 | 1_2:+55223869 | Msa0078000:three_prime_UTR |
CATGGTCAACACTTAATGGG+TGG | 0.588204 | 1_2:+55221035 | Msa0078000:five_prime_UTR |
ATGGTCAACACTTAATGGGT+GGG | 0.597116 | 1_2:+55221036 | Msa0078000:five_prime_UTR |
GGGATTTGTAGTGTAGAATG+TGG | 0.597864 | 1_2:-55220903 | None:intergenic |
CTCAGAAAATGCAATCGGAT+GGG | 0.599299 | 1_2:+55221186 | Msa0078000:exon |
GATTTGTAGTGTAGAATGTG+GGG | 0.624298 | 1_2:-55220901 | None:intergenic |
AAGACTGAGACTGAACAAAG+TGG | 0.627696 | 1_2:-55221232 | None:intergenic |
GAAGGACCCCAAGATTCCAA+AGG | 0.632878 | 1_2:+55223645 | Msa0078000:CDS |
AGACTGAGACTGAACAAAGT+GGG | 0.647300 | 1_2:-55221231 | None:intergenic |
CAACAGAGCGGAATCTATGG+TGG | 0.649195 | 1_2:-55221000 | None:intergenic |
ATTTGTAGTGTAGAATGTGG+GGG | 0.661830 | 1_2:-55220900 | None:intergenic |
TTTGTAGTGTAGAATGTGGG+GGG | 0.665344 | 1_2:-55220899 | None:intergenic |
TGTTTGGTGAAGAAAGTGAG+CGG | 0.672165 | 1_2:-55220932 | None:intergenic |
AACGGTTGGAACAAGAAACA+AGG | 0.682214 | 1_2:+55221297 | Msa0078000:CDS |
TAATGAAAGAAACAACAGAG+CGG | 0.773565 | 1_2:-55221012 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGTTCTTTTTTTAATAATT+GGG | - | chr1_2:55222059-55222078 | None:intergenic | 10.0% |
!!! | AAAGTTCTTTTTTTAATAAT+TGG | - | chr1_2:55222060-55222079 | None:intergenic | 10.0% |
!!! | TCAATTAAAGCTAAATTTTA+AGG | - | chr1_2:55221477-55221496 | None:intergenic | 15.0% |
!!! | TGAATTTTTTGTTTTTAGTT+TGG | + | chr1_2:55221522-55221541 | Msa0078000:intron | 15.0% |
!!! | AAAAAAAGAACTTTTCTTTT+TGG | + | chr1_2:55222066-55222085 | Msa0078000:intron | 15.0% |
!!! | AAAAAAGAACTTTTCTTTTT+GGG | + | chr1_2:55222067-55222086 | Msa0078000:intron | 15.0% |
!! | AAAATAATCTTAACTAGTTA+AGG | - | chr1_2:55223083-55223102 | None:intergenic | 15.0% |
!! | TTACAAAAGTAATTTATCAA+AGG | - | chr1_2:55223553-55223572 | None:intergenic | 15.0% |
!! | TTAACGAGTAATAGTAAAAT+GGG | + | chr1_2:55221429-55221448 | Msa0078000:intron | 20.0% |
!!! | TTTAGCTTTAATTGATTTCT+TGG | + | chr1_2:55221482-55221501 | Msa0078000:intron | 20.0% |
!!! | TTAGCTTTAATTGATTTCTT+GGG | + | chr1_2:55221483-55221502 | Msa0078000:intron | 20.0% |
!!! | TCAACTTTTGATAGTTAAAA+GGG | + | chr1_2:55221655-55221674 | Msa0078000:intron | 20.0% |
!!! | AATTTTTAGTGACTATGTTA+TGG | + | chr1_2:55221775-55221794 | Msa0078000:intron | 20.0% |
!!! | AAAAAGAACTTTTCTTTTTG+GGG | + | chr1_2:55222068-55222087 | Msa0078000:intron | 20.0% |
!!! | TAAAATTTTGTTGTGTTTGT+TGG | - | chr1_2:55222629-55222648 | None:intergenic | 20.0% |
!! | TTGATCTTATTAAAGATTCA+GGG | + | chr1_2:55222655-55222674 | Msa0078000:intron | 20.0% |
!! | ATTCACTATAAATTCAATGT+AGG | + | chr1_2:55223287-55223306 | Msa0078000:intron | 20.0% |
!! | AAATAAACTCACAAAATTTC+AGG | - | chr1_2:55223744-55223763 | None:intergenic | 20.0% |
!! | GATCATTTAAGAAATGTAAA+TGG | + | chr1_2:55223864-55223883 | Msa0078000:three_prime_UTR | 20.0% |
!! | ATTTAAGAAATGTAAATGGA+GGG | + | chr1_2:55223868-55223887 | Msa0078000:three_prime_UTR | 20.0% |
! | TTGAAGTGAAAAAATATGAC+CGG | - | chr1_2:55221077-55221096 | None:intergenic | 25.0% |
! | GTTAACGAGTAATAGTAAAA+TGG | + | chr1_2:55221428-55221447 | Msa0078000:intron | 25.0% |
! | ACTGAAAAGTAATGACAATT+TGG | + | chr1_2:55221561-55221580 | Msa0078000:intron | 25.0% |
! | CTGAAAAGTAATGACAATTT+GGG | + | chr1_2:55221562-55221581 | Msa0078000:intron | 25.0% |
! | TGAAAAGTAATGACAATTTG+GGG | + | chr1_2:55221563-55221582 | Msa0078000:intron | 25.0% |
!!! | GTCAACTTTTGATAGTTAAA+AGG | + | chr1_2:55221654-55221673 | Msa0078000:intron | 25.0% |
! | ATGAGTAGAACAAATATTCA+AGG | - | chr1_2:55221740-55221759 | None:intergenic | 25.0% |
! | TTTGTAATAACAGCAACATA+AGG | + | chr1_2:55222215-55222234 | Msa0078000:intron | 25.0% |
! | AGAAAGAAAGACGAAAATTA+AGG | - | chr1_2:55222285-55222304 | None:intergenic | 25.0% |
! | CTTGATCTTATTAAAGATTC+AGG | + | chr1_2:55222654-55222673 | Msa0078000:intron | 25.0% |
! | GCAAATTACGAATTAATCAA+GGG | - | chr1_2:55222959-55222978 | None:intergenic | 25.0% |
!!! | CATTCATTTCTGAGATATAT+AGG | + | chr1_2:55223151-55223170 | Msa0078000:intron | 25.0% |
!! | ATCATCTTTTCTGTAAAAAG+TGG | - | chr1_2:55223199-55223218 | None:intergenic | 25.0% |
!! | TTTTACAGAAAAGATGATTG+TGG | + | chr1_2:55223201-55223220 | Msa0078000:intron | 25.0% |
! | TCAAATTTGATCAGACATTA+TGG | - | chr1_2:55223390-55223409 | None:intergenic | 25.0% |
!! | GATTTTACAATGGAAGTAAT+GGG | - | chr1_2:55223484-55223503 | None:intergenic | 25.0% |
!! | AGATTTTACAATGGAAGTAA+TGG | - | chr1_2:55223485-55223504 | None:intergenic | 25.0% |
! | CATTTAAGAAATGTAAATGG+AGG | + | chr1_2:55223867-55223886 | Msa0078000:three_prime_UTR | 25.0% |
! | TTTAAGAAATGTAAATGGAG+GGG | + | chr1_2:55223869-55223888 | Msa0078000:three_prime_UTR | 25.0% |
!!! | AACTGGTTTGAAATAGTTAA+GGG | + | chr1_2:55223902-55223921 | Msa0078000:three_prime_UTR | 25.0% |
TAATGAAAGAAACAACAGAG+CGG | - | chr1_2:55221015-55221034 | None:intergenic | 30.0% | |
!! | CTGTTGTTTCTTTCATTACA+TGG | + | chr1_2:55221017-55221036 | Msa0078000:five_prime_UTR | 30.0% |
ATTACATGGTCAACACTTAA+TGG | + | chr1_2:55221031-55221050 | Msa0078000:five_prime_UTR | 30.0% | |
TTACATGGTCAACACTTAAT+GGG | + | chr1_2:55221032-55221051 | Msa0078000:five_prime_UTR | 30.0% | |
TGAAGTGAAAAAATATGACC+GGG | - | chr1_2:55221076-55221095 | None:intergenic | 30.0% | |
AATAGCTTGATGAAGCTAAA+GGG | - | chr1_2:55221129-55221148 | None:intergenic | 30.0% | |
AAATAGCTTGATGAAGCTAA+AGG | - | chr1_2:55221130-55221149 | None:intergenic | 30.0% | |
!!! | AGTCTTTTTCAGATACAAGA+GGG | + | chr1_2:55221249-55221268 | Msa0078000:CDS | 30.0% |
! | TCTTCATCTTTACCATGTTT+TGG | + | chr1_2:55221353-55221372 | Msa0078000:intron | 30.0% |
AAGAACAAAACTCCAAAACA+TGG | - | chr1_2:55221368-55221387 | None:intergenic | 30.0% | |
! | TTCCATGTACTTCAAGTTTA+AGG | + | chr1_2:55221632-55221651 | Msa0078000:intron | 30.0% |
!! | TTCGTCTTGTTCTAACATTT+TGG | - | chr1_2:55221888-55221907 | None:intergenic | 30.0% |
TAAACACACACTATTAGAGT+AGG | + | chr1_2:55221977-55221996 | Msa0078000:intron | 30.0% | |
ACGAAAATTAAGGCGAAAAA+TGG | - | chr1_2:55222275-55222294 | None:intergenic | 30.0% | |
TGTGCCATCAAACAAAAAAA+TGG | + | chr1_2:55222470-55222489 | Msa0078000:intron | 30.0% | |
GTGCCATCAAACAAAAAAAT+GGG | + | chr1_2:55222471-55222490 | Msa0078000:intron | 30.0% | |
CTTGTGTAGAAAATATGGTA+AGG | - | chr1_2:55222571-55222590 | None:intergenic | 30.0% | |
! | TACCATATTTTCTACACAAG+AGG | + | chr1_2:55222571-55222590 | Msa0078000:intron | 30.0% |
AACCTCTTGTGTAGAAAATA+TGG | - | chr1_2:55222576-55222595 | None:intergenic | 30.0% | |
GGATAGACATTTATCAGTAA+TGG | - | chr1_2:55222704-55222723 | None:intergenic | 30.0% | |
AATTACGAATTAATCAAGGG+AGG | - | chr1_2:55222956-55222975 | None:intergenic | 30.0% | |
GGCAAATTACGAATTAATCA+AGG | - | chr1_2:55222960-55222979 | None:intergenic | 30.0% | |
! | ATGTCTGAAGTTGATTGATA+AGG | + | chr1_2:55222984-55223003 | Msa0078000:intron | 30.0% |
ATAAGCCAGTTACCTAAAAT+TGG | - | chr1_2:55223013-55223032 | None:intergenic | 30.0% | |
!!! | TATATAGGTTGTTTTTCCAG+CGG | + | chr1_2:55223166-55223185 | Msa0078000:intron | 30.0% |
! | TCTTTTCTGTAAAAAGTGGT+TGG | - | chr1_2:55223195-55223214 | None:intergenic | 30.0% |
CGATTAAGTTTGAATTTCTC+TGG | + | chr1_2:55223413-55223432 | Msa0078000:intron | 30.0% | |
! | TGGCATAAGAGATTTTACAA+TGG | - | chr1_2:55223494-55223513 | None:intergenic | 30.0% |
TAGCATTAAACACTAGAAGT+TGG | - | chr1_2:55223514-55223533 | None:intergenic | 30.0% | |
CTATCCCATATAGGATTTAA+GGG | - | chr1_2:55223618-55223637 | None:intergenic | 30.0% | |
TCTATCCCATATAGGATTTA+AGG | - | chr1_2:55223619-55223638 | None:intergenic | 30.0% | |
TAAATCCTATATGGGATAGA+TGG | + | chr1_2:55223619-55223638 | Msa0078000:CDS | 30.0% | |
AGGGAAAAAAACGTAGAATT+TGG | - | chr1_2:55223705-55223724 | None:intergenic | 30.0% | |
!! | TTTTCCCTTTAATTCGAGTT+TGG | + | chr1_2:55223717-55223736 | Msa0078000:three_prime_UTR | 30.0% |
TTTCTTAAATGATCATCGAC+TGG | - | chr1_2:55223858-55223877 | None:intergenic | 30.0% | |
!! | CAACTGGTTTGAAATAGTTA+AGG | + | chr1_2:55223901-55223920 | Msa0078000:three_prime_UTR | 30.0% |
ATTTGTAGTGTAGAATGTGG+GGG | - | chr1_2:55220903-55220922 | None:intergenic | 35.0% | |
GATTTGTAGTGTAGAATGTG+GGG | - | chr1_2:55220904-55220923 | None:intergenic | 35.0% | |
GGATTTGTAGTGTAGAATGT+GGG | - | chr1_2:55220905-55220924 | None:intergenic | 35.0% | |
GAAGTGAAAAAATATGACCG+GGG | - | chr1_2:55221075-55221094 | None:intergenic | 35.0% | |
GCTAAGATTGTTTGTAGCAA+TGG | - | chr1_2:55221166-55221185 | None:intergenic | 35.0% | |
TTAGCCTCAGAAAATGCAAT+CGG | + | chr1_2:55221181-55221200 | Msa0078000:exon | 35.0% | |
!!! | CAGTCTTTTTCAGATACAAG+AGG | + | chr1_2:55221248-55221267 | Msa0078000:CDS | 35.0% |
GGATACATGCTGAACTTAAA+CGG | + | chr1_2:55221279-55221298 | Msa0078000:CDS | 35.0% | |
! | ACAAGAAACAAGGTACTTAG+AGG | + | chr1_2:55221307-55221326 | Msa0078000:CDS | 35.0% |
ATTTCTTGGGATACTCTTCT+GGG | + | chr1_2:55221496-55221515 | Msa0078000:intron | 35.0% | |
GGGAATTATGTTGTTGTGAT+AGG | + | chr1_2:55221583-55221602 | Msa0078000:intron | 35.0% | |
TTATGTTGTTGTGATAGGAG+AGG | + | chr1_2:55221588-55221607 | Msa0078000:intron | 35.0% | |
!! | ATAGGAGAGGTACTTGTAAT+TGG | + | chr1_2:55221601-55221620 | Msa0078000:intron | 35.0% |
!! | TAGGAGAGGTACTTGTAATT+GGG | + | chr1_2:55221602-55221621 | Msa0078000:intron | 35.0% |
AACTTGAAGTACATGGAAGA+TGG | - | chr1_2:55221630-55221649 | None:intergenic | 35.0% | |
GACCTTAAACTTGAAGTACA+TGG | - | chr1_2:55221637-55221656 | None:intergenic | 35.0% | |
GACAAAACATTTGCAACATG+AGG | - | chr1_2:55221718-55221737 | None:intergenic | 35.0% | |
ACAAAGTCTCTCATAGCAAT+GGG | - | chr1_2:55222107-55222126 | None:intergenic | 35.0% | |
CCTCAAATTGTTCAAAAGTC+AGG | - | chr1_2:55222351-55222370 | None:intergenic | 35.0% | |
! | CCTGACTTTTGAACAATTTG+AGG | + | chr1_2:55222348-55222367 | Msa0078000:intron | 35.0% |
GTAGTTGCGTTATGCTTATT+TGG | + | chr1_2:55222391-55222410 | Msa0078000:intron | 35.0% | |
!!! | CTGCCCATTTTTTTGTTTGA+TGG | - | chr1_2:55222477-55222496 | None:intergenic | 35.0% |
! | AGGGTCTTATGAAAGATTCA+GGG | + | chr1_2:55222602-55222621 | Msa0078000:intron | 35.0% |
GGGTCTTGATAAATTAGTGT+TGG | + | chr1_2:55222675-55222694 | Msa0078000:intron | 35.0% | |
TCTAGATGACATGTTCTGTT+TGG | - | chr1_2:55222725-55222744 | None:intergenic | 35.0% | |
TACCTGCGTTGGAATATTTA+AGG | + | chr1_2:55222757-55222776 | Msa0078000:intron | 35.0% | |
AACCTTAAATATTCCAACGC+AGG | - | chr1_2:55222762-55222781 | None:intergenic | 35.0% | |
! | CAAGAACTCAAAAAAGGTGT+TGG | - | chr1_2:55222807-55222826 | None:intergenic | 35.0% |
GCAGAACAAGAACTCAAAAA+AGG | - | chr1_2:55222813-55222832 | None:intergenic | 35.0% | |
!!! | TTTTGAGTTCTTGTTCTGCT+CGG | + | chr1_2:55222814-55222833 | Msa0078000:intron | 35.0% |
TGTTTAAGTCAATTGCACAG+GGG | - | chr1_2:55222884-55222903 | None:intergenic | 35.0% | |
GTGTTTAAGTCAATTGCACA+GGG | - | chr1_2:55222885-55222904 | None:intergenic | 35.0% | |
! | GCAATTGACTTAAACACCAA+TGG | + | chr1_2:55222888-55222907 | Msa0078000:intron | 35.0% |
TATTTGCATACTGTGTCCAT+TGG | - | chr1_2:55222907-55222926 | None:intergenic | 35.0% | |
AGGAGGGAACTGAAAAATTA+TGG | - | chr1_2:55222936-55222955 | None:intergenic | 35.0% | |
! | TCTGAAGTTGATTGATAAGG+TGG | + | chr1_2:55222987-55223006 | Msa0078000:intron | 35.0% |
! | TTGATAAGGTGGCCAATTTT+AGG | + | chr1_2:55222998-55223017 | Msa0078000:intron | 35.0% |
CAGATAATTAGTGCTCATGA+TGG | - | chr1_2:55223110-55223129 | None:intergenic | 35.0% | |
TCATGAGCACTAATTATCTG+TGG | + | chr1_2:55223110-55223129 | Msa0078000:intron | 35.0% | |
TTTCTGTAAAAAGTGGTTGG+AGG | - | chr1_2:55223192-55223211 | None:intergenic | 35.0% | |
AAATTCAATGTAGGAAGAGC+TGG | + | chr1_2:55223296-55223315 | Msa0078000:intron | 35.0% | |
TTGGTCCCTTAAATCCTATA+TGG | + | chr1_2:55223610-55223629 | Msa0078000:CDS | 35.0% | |
TGGTCCCTTAAATCCTATAT+GGG | + | chr1_2:55223611-55223630 | Msa0078000:CDS | 35.0% | |
TCAAACCATCTATCCCATAT+AGG | - | chr1_2:55223627-55223646 | None:intergenic | 35.0% | |
ATATGGGATAGATGGTTTGA+AGG | + | chr1_2:55223627-55223646 | Msa0078000:CDS | 35.0% | |
AGGACCAAACTCGAATTAAA+GGG | - | chr1_2:55223724-55223743 | None:intergenic | 35.0% | |
TTTGTAGTGTAGAATGTGGG+GGG | - | chr1_2:55220902-55220921 | None:intergenic | 40.0% | |
GGGATTTGTAGTGTAGAATG+TGG | - | chr1_2:55220906-55220925 | None:intergenic | 40.0% | |
! | TGTTTGGTGAAGAAAGTGAG+CGG | - | chr1_2:55220935-55220954 | None:intergenic | 40.0% |
! | TGGTTAGAAGTGCGTTTGTT+TGG | - | chr1_2:55220951-55220970 | None:intergenic | 40.0% |
! | GACAGAGAAAGAGACAGTTT+TGG | - | chr1_2:55220971-55220990 | None:intergenic | 40.0% |
AAACAACAGAGCGGAATCTA+TGG | - | chr1_2:55221006-55221025 | None:intergenic | 40.0% | |
! | ATGGTCAACACTTAATGGGT+GGG | + | chr1_2:55221036-55221055 | Msa0078000:five_prime_UTR | 40.0% |
CTCAGAAAATGCAATCGGAT+GGG | + | chr1_2:55221186-55221205 | Msa0078000:exon | 40.0% | |
AGACTGAGACTGAACAAAGT+GGG | - | chr1_2:55221234-55221253 | None:intergenic | 40.0% | |
AAGACTGAGACTGAACAAAG+TGG | - | chr1_2:55221235-55221254 | None:intergenic | 40.0% | |
CAGATACAAGAGGGAAACAT+AGG | + | chr1_2:55221258-55221277 | Msa0078000:CDS | 40.0% | |
ACATGCTGAACTTAAACGGT+TGG | + | chr1_2:55221283-55221302 | Msa0078000:CDS | 40.0% | |
AACGGTTGGAACAAGAAACA+AGG | + | chr1_2:55221297-55221316 | Msa0078000:CDS | 40.0% | |
! | GAAACAAGGTACTTAGAGGT+TGG | + | chr1_2:55221311-55221330 | Msa0078000:intron | 40.0% |
GATTTCTTGGGATACTCTTC+TGG | + | chr1_2:55221495-55221514 | Msa0078000:intron | 40.0% | |
!! | AGGAGAGGTACTTGTAATTG+GGG | + | chr1_2:55221603-55221622 | Msa0078000:intron | 40.0% |
!!! | TTTTCTTTTTGGGGTAGCCA+AGG | + | chr1_2:55222077-55222096 | Msa0078000:intron | 40.0% |
CAAAGTCTCTCATAGCAATG+GGG | - | chr1_2:55222106-55222125 | None:intergenic | 40.0% | |
GACAAAGTCTCTCATAGCAA+TGG | - | chr1_2:55222108-55222127 | None:intergenic | 40.0% | |
GAGACTTGATGTTTGACGTT+TGG | + | chr1_2:55222315-55222334 | Msa0078000:intron | 40.0% | |
! | GTCTCTTTTGCTCACTCTAT+AGG | - | chr1_2:55222423-55222442 | None:intergenic | 40.0% |
GCACATGTTTGTATGCACAT+TGG | + | chr1_2:55222446-55222465 | Msa0078000:intron | 40.0% | |
GTTGCGTACAAAAGACCAAA+TGG | - | chr1_2:55222549-55222568 | None:intergenic | 40.0% | |
! | TACACAAGAGGTTGTTTCCA+GGG | + | chr1_2:55222583-55222602 | Msa0078000:intron | 40.0% |
CTGAATCTTTCATAAGACCC+TGG | - | chr1_2:55222603-55222622 | None:intergenic | 40.0% | |
! | CAGGGTCTTATGAAAGATTC+AGG | + | chr1_2:55222601-55222620 | Msa0078000:intron | 40.0% |
!! | AACTCAAAAAAGGTGTTGGC+AGG | - | chr1_2:55222803-55222822 | None:intergenic | 40.0% |
TTCTTGTTCTGCTCGGTTAA+GGG | + | chr1_2:55222821-55222840 | Msa0078000:intron | 40.0% | |
GGGGATTTGAGAAACATCAA+TGG | - | chr1_2:55222865-55222884 | None:intergenic | 40.0% | |
GGTGTTTAAGTCAATTGCAC+AGG | - | chr1_2:55222886-55222905 | None:intergenic | 40.0% | |
ACGAATTAATCAAGGGAGGA+GGG | - | chr1_2:55222952-55222971 | None:intergenic | 40.0% | |
TACGAATTAATCAAGGGAGG+AGG | - | chr1_2:55222953-55222972 | None:intergenic | 40.0% | |
CAATCAACTTCAGACATTGC+TGG | - | chr1_2:55222981-55223000 | None:intergenic | 40.0% | |
! | AACTGGCTTATATCAGTCGT+TGG | + | chr1_2:55223022-55223041 | Msa0078000:intron | 40.0% |
TGAGCACTAATTATCTGTGG+AGG | + | chr1_2:55223113-55223132 | Msa0078000:intron | 40.0% | |
!! | TACAATGGAAGTAATGGGTC+AGG | - | chr1_2:55223479-55223498 | None:intergenic | 40.0% |
TTCTGCTTTGACAGAACAGT+TGG | + | chr1_2:55223591-55223610 | Msa0078000:intron | 40.0% | |
CAGGACCAAACTCGAATTAA+AGG | - | chr1_2:55223725-55223744 | None:intergenic | 40.0% | |
! | AAGAAAGTGAGCGGGTTTGA+GGG | - | chr1_2:55220926-55220945 | None:intergenic | 45.0% |
! | GTTTGGTGAAGAAAGTGAGC+GGG | - | chr1_2:55220934-55220953 | None:intergenic | 45.0% |
CATGGTCAACACTTAATGGG+TGG | + | chr1_2:55221035-55221054 | Msa0078000:five_prime_UTR | 45.0% | |
TATGACCGGGGAATGTGAAT+GGG | - | chr1_2:55221063-55221082 | None:intergenic | 45.0% | |
ATATGACCGGGGAATGTGAA+TGG | - | chr1_2:55221064-55221083 | None:intergenic | 45.0% | |
! | CCATCCGATTGCATTTTCTG+AGG | - | chr1_2:55221188-55221207 | None:intergenic | 45.0% |
CCTCAGAAAATGCAATCGGA+TGG | + | chr1_2:55221185-55221204 | Msa0078000:exon | 45.0% | |
GCTATGAGAGACTTTGTCTC+TGG | + | chr1_2:55222110-55222129 | Msa0078000:intron | 45.0% | |
! | AGAGACTTTGTCTCTGGTTC+AGG | + | chr1_2:55222116-55222135 | Msa0078000:intron | 45.0% |
! | GAGACTTTGTCTCTGGTTCA+GGG | + | chr1_2:55222117-55222136 | Msa0078000:intron | 45.0% |
! | AGACTTTGTCTCTGGTTCAG+GGG | + | chr1_2:55222118-55222137 | Msa0078000:intron | 45.0% |
! | GGATGAGTTTTGCTGAGACT+TGG | + | chr1_2:55222369-55222388 | Msa0078000:intron | 45.0% |
! | CTACACAAGAGGTTGTTTCC+AGG | + | chr1_2:55222582-55222601 | Msa0078000:intron | 45.0% |
TGATGTGACATTACCTGCGT+TGG | + | chr1_2:55222746-55222765 | Msa0078000:intron | 45.0% | |
GTTCTTGTTCTGCTCGGTTA+AGG | + | chr1_2:55222820-55222839 | Msa0078000:intron | 45.0% | |
!! | GGTGGCCAATTTTAGGTAAC+TGG | + | chr1_2:55223005-55223024 | Msa0078000:intron | 45.0% |
AAGAGCTGGAAAAGCTTGAG+AGG | + | chr1_2:55223310-55223329 | Msa0078000:CDS | 45.0% | |
!!! | TCTCTGGTGTTTGTTTTGCC+AGG | + | chr1_2:55223429-55223448 | Msa0078000:intron | 45.0% |
!!! | GTTTGTTTTGCCAGGATGCT+TGG | + | chr1_2:55223437-55223456 | Msa0078000:intron | 45.0% |
TGCTTGGCAATGTCGAGAAA+AGG | + | chr1_2:55223453-55223472 | Msa0078000:CDS | 45.0% | |
GTAGAATGTGGGGGGTGAAA+AGG | - | chr1_2:55220894-55220913 | None:intergenic | 50.0% | |
! | GAAGAAAGTGAGCGGGTTTG+AGG | - | chr1_2:55220927-55220946 | None:intergenic | 50.0% |
GAGCGGAATCTATGGTGGTT+TGG | - | chr1_2:55220998-55221017 | None:intergenic | 50.0% | |
CAACAGAGCGGAATCTATGG+TGG | - | chr1_2:55221003-55221022 | None:intergenic | 50.0% | |
AAAGTGGGTCGTCGGGTTAT+CGG | - | chr1_2:55221219-55221238 | None:intergenic | 50.0% | |
ACTGAACAAAGTGGGTCGTC+GGG | - | chr1_2:55221226-55221245 | None:intergenic | 50.0% | |
GACTGAACAAAGTGGGTCGT+CGG | - | chr1_2:55221227-55221246 | None:intergenic | 50.0% | |
AGTCTCTCATAGCAATGGGG+TGG | - | chr1_2:55222103-55222122 | None:intergenic | 50.0% | |
TGGTTCAGGGGTCTTCACTT+AGG | + | chr1_2:55222130-55222149 | Msa0078000:intron | 50.0% | |
!! | ATGCGGGAGCATTAGTGCAA+CGG | - | chr1_2:55222501-55222520 | None:intergenic | 50.0% |
GCTGGAAAAGCTTGAGAGGA+TGG | + | chr1_2:55223314-55223333 | Msa0078000:CDS | 50.0% | |
GAAGGACCCCAAGATTCCAA+AGG | + | chr1_2:55223645-55223664 | Msa0078000:CDS | 50.0% | |
!! | CAGCAGCCTTTGGAATCTTG+GGG | - | chr1_2:55223654-55223673 | None:intergenic | 50.0% |
!! | GCAGCAGCCTTTGGAATCTT+GGG | - | chr1_2:55223655-55223674 | None:intergenic | 50.0% |
!! | TGCAGCAGCCTTTGGAATCT+TGG | - | chr1_2:55223656-55223675 | None:intergenic | 50.0% |
TGGGACCCATTCACATTCCC+CGG | + | chr1_2:55221055-55221074 | Msa0078000:five_prime_UTR | 55.0% | |
TCATAGCAATGGGGTGGCCT+TGG | - | chr1_2:55222097-55222116 | None:intergenic | 55.0% | |
!! | TGCGGGAGCATTAGTGCAAC+GGG | - | chr1_2:55222500-55222519 | None:intergenic | 55.0% |
ACTAATGCTCCCGCATACGC+AGG | + | chr1_2:55222505-55222524 | Msa0078000:intron | 55.0% | |
CTAATGCTCCCGCATACGCA+GGG | + | chr1_2:55222506-55222525 | Msa0078000:intron | 55.0% | |
CAAATGGTGAGACCCCTTCC+TGG | - | chr1_2:55222533-55222552 | None:intergenic | 55.0% | |
CAGGAAGGGGTCTCACCATT+TGG | + | chr1_2:55222531-55222550 | Msa0078000:intron | 55.0% | |
AAAAAGTGGTTGGAGGCCGC+TGG | - | chr1_2:55223185-55223204 | None:intergenic | 55.0% | |
CTCGACATTGCCAAGCATCC+TGG | - | chr1_2:55223450-55223469 | None:intergenic | 55.0% | |
CCAACATCTGCAGCAGCCTT+TGG | - | chr1_2:55223664-55223683 | None:intergenic | 55.0% | |
CCAAAGGCTGCTGCAGATGT+TGG | + | chr1_2:55223661-55223680 | Msa0078000:CDS | 55.0% | |
GGAGGGGTGAGTATCTCAAC+TGG | + | chr1_2:55223885-55223904 | Msa0078000:three_prime_UTR | 55.0% | |
TTCCTGGACCCTGCGTATGC+GGG | - | chr1_2:55222517-55222536 | None:intergenic | 60.0% | |
CTTCCTGGACCCTGCGTATG+CGG | - | chr1_2:55222518-55222537 | None:intergenic | 60.0% | |
GCATACGCAGGGTCCAGGAA+GGG | + | chr1_2:55222517-55222536 | Msa0078000:intron | 60.0% | |
CATACGCAGGGTCCAGGAAG+GGG | + | chr1_2:55222518-55222537 | Msa0078000:intron | 60.0% | |
CGCATACGCAGGGTCCAGGA+AGG | + | chr1_2:55222516-55222535 | Msa0078000:intron | 65.0% | |
CTCCCGCATACGCAGGGTCC+AGG | + | chr1_2:55222512-55222531 | Msa0078000:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 55220841 | 55223928 | 55220841 | ID=Msa0078000;Name=Msa0078000 |
chr1_2 | mRNA | 55220841 | 55223928 | 55220841 | ID=Msa0078000-mRNA-1;Parent=Msa0078000;Name=Msa0078000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=353|1|1|1|1|1|4|236|106 |
chr1_2 | exon | 55220841 | 55221328 | 55220841 | ID=Msa0078000-mRNA-1:exon:17186;Parent=Msa0078000-mRNA-1 |
chr1_2 | exon | 55223309 | 55223361 | 55223309 | ID=Msa0078000-mRNA-1:exon:17187;Parent=Msa0078000-mRNA-1 |
chr1_2 | exon | 55223451 | 55223495 | 55223451 | ID=Msa0078000-mRNA-1:exon:17188;Parent=Msa0078000-mRNA-1 |
chr1_2 | exon | 55223605 | 55223928 | 55223605 | ID=Msa0078000-mRNA-1:exon:17189;Parent=Msa0078000-mRNA-1 |
chr1_2 | five_prime_UTR | 55220841 | 55221193 | 55220841 | ID=Msa0078000-mRNA-1:five_prime_utr;Parent=Msa0078000-mRNA-1 |
chr1_2 | CDS | 55221194 | 55221328 | 55221194 | ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1 |
chr1_2 | CDS | 55223309 | 55223361 | 55223309 | ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1 |
chr1_2 | CDS | 55223451 | 55223495 | 55223451 | ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1 |
chr1_2 | CDS | 55223605 | 55223692 | 55223605 | ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1 |
chr1_2 | three_prime_UTR | 55223693 | 55223928 | 55223693 | ID=Msa0078000-mRNA-1:three_prime_utr;Parent=Msa0078000-mRNA-1 |
Gene Sequence |
Protein sequence |