AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078000 MtrunA17_Chr1g0188131 95.413 109 2 1 1 106 1 109 6.63e-74 214
Msa0078000 MtrunA17_Chr1g0188161 79.817 109 18 3 1 106 1 108 1.63e-48 150
Msa0078000 MtrunA17_Chr1g0184941 53.846 104 47 1 3 106 7 109 7.01e-37 120
Msa0078000 MtrunA17_Chr1g0148341 40.217 92 52 2 16 105 35 125 4.77e-18 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078000 AT3G63420.1 56.842 95 40 1 12 106 5 98 2.46e-32 109
Msa0078000 AT3G63420.2 56.842 95 40 1 12 106 5 98 2.46e-32 109
Msa0078000 AT3G22942.1 70.238 84 24 1 23 106 18 100 7.20e-32 108
Msa0078000 AT3G63420.3 56.842 95 40 1 12 106 45 138 1.23e-31 108

Find 70 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCCCATATAGGATTTA+AGG 0.165452 1_2:-55223616 None:intergenic
CAGGACCAAACTCGAATTAA+AGG 0.240045 1_2:-55223722 None:intergenic
ATTACATGGTCAACACTTAA+TGG 0.242126 1_2:+55221031 Msa0078000:five_prime_UTR
TGCAGCAGCCTTTGGAATCT+TGG 0.250553 1_2:-55223653 None:intergenic
AAATAAACTCACAAAATTTC+AGG 0.285103 1_2:-55223741 None:intergenic
GCAGCAGCCTTTGGAATCTT+GGG 0.298135 1_2:-55223652 None:intergenic
TTGGTCCCTTAAATCCTATA+TGG 0.329222 1_2:+55223610 Msa0078000:CDS
CAACTGGTTTGAAATAGTTA+AGG 0.332083 1_2:+55223901 Msa0078000:three_prime_UTR
CTGTTGTTTCTTTCATTACA+TGG 0.337952 1_2:+55221017 Msa0078000:five_prime_UTR
TAAATCCTATATGGGATAGA+TGG 0.350762 1_2:+55223619 Msa0078000:CDS
GATCATTTAAGAAATGTAAA+TGG 0.351180 1_2:+55223864 Msa0078000:three_prime_UTR
AAAGTGGGTCGTCGGGTTAT+CGG 0.364117 1_2:-55221216 None:intergenic
TTACATGGTCAACACTTAAT+GGG 0.374330 1_2:+55221032 Msa0078000:five_prime_UTR
AAACAACAGAGCGGAATCTA+TGG 0.377414 1_2:-55221003 None:intergenic
GACAGAGAAAGAGACAGTTT+TGG 0.379861 1_2:-55220968 None:intergenic
AACTGGTTTGAAATAGTTAA+GGG 0.382241 1_2:+55223902 Msa0078000:three_prime_UTR
CCAACATCTGCAGCAGCCTT+TGG 0.388678 1_2:-55223661 None:intergenic
TTGAAATAGTTAAGGGTTGA+AGG 0.396529 1_2:+55223909 Msa0078000:three_prime_UTR
AGGACCAAACTCGAATTAAA+GGG 0.414218 1_2:-55223721 None:intergenic
GAAGAAAGTGAGCGGGTTTG+AGG 0.425851 1_2:-55220924 None:intergenic
CTATCCCATATAGGATTTAA+GGG 0.439135 1_2:-55223615 None:intergenic
GCTAAGATTGTTTGTAGCAA+TGG 0.445005 1_2:-55221163 None:intergenic
TTCTGCTTTGACAGAACAGT+TGG 0.445567 1_2:+55223591 Msa0078000:intron
GGATACATGCTGAACTTAAA+CGG 0.451608 1_2:+55221279 Msa0078000:CDS
GAGCGGAATCTATGGTGGTT+TGG 0.455036 1_2:-55220995 None:intergenic
TCAAACCATCTATCCCATAT+AGG 0.457946 1_2:-55223624 None:intergenic
TACAATGGAAGTAATGGGTC+AGG 0.462616 1_2:-55223476 None:intergenic
GCTGGAAAAGCTTGAGAGGA+TGG 0.463059 1_2:+55223314 Msa0078000:CDS
AAATTCAATGTAGGAAGAGC+TGG 0.464733 1_2:+55223296 Msa0078000:intron
TGGTTAGAAGTGCGTTTGTT+TGG 0.471868 1_2:-55220948 None:intergenic
CCAAAGGCTGCTGCAGATGT+TGG 0.474766 1_2:+55223661 Msa0078000:CDS
ACTGAACAAAGTGGGTCGTC+GGG 0.478830 1_2:-55221223 None:intergenic
AAGAAAGTGAGCGGGTTTGA+GGG 0.479219 1_2:-55220923 None:intergenic
ATATGACCGGGGAATGTGAA+TGG 0.479588 1_2:-55221061 None:intergenic
CAGATACAAGAGGGAAACAT+AGG 0.483669 1_2:+55221258 Msa0078000:CDS
ACAAGAAACAAGGTACTTAG+AGG 0.487565 1_2:+55221307 Msa0078000:CDS
AATAGCTTGATGAAGCTAAA+GGG 0.491263 1_2:-55221126 None:intergenic
AAATAGCTTGATGAAGCTAA+AGG 0.493185 1_2:-55221127 None:intergenic
TGGTCCCTTAAATCCTATAT+GGG 0.499485 1_2:+55223611 Msa0078000:CDS
TGCTTGGCAATGTCGAGAAA+AGG 0.501990 1_2:+55223453 Msa0078000:CDS
ATATGGGATAGATGGTTTGA+AGG 0.520251 1_2:+55223627 Msa0078000:CDS
GGAGGGGTGAGTATCTCAAC+TGG 0.521496 1_2:+55223885 Msa0078000:three_prime_UTR
TGGGACCCATTCACATTCCC+CGG 0.524059 1_2:+55221055 Msa0078000:five_prime_UTR
GACTGAACAAAGTGGGTCGT+CGG 0.531551 1_2:-55221224 None:intergenic
CAGCAGCCTTTGGAATCTTG+GGG 0.533463 1_2:-55223651 None:intergenic
TTTCTTAAATGATCATCGAC+TGG 0.535411 1_2:-55223855 None:intergenic
TTAGCCTCAGAAAATGCAAT+CGG 0.537051 1_2:+55221181 Msa0078000:exon
ACATGCTGAACTTAAACGGT+TGG 0.538744 1_2:+55221283 Msa0078000:CDS
TATGACCGGGGAATGTGAAT+GGG 0.539487 1_2:-55221060 None:intergenic
GGATTTGTAGTGTAGAATGT+GGG 0.540585 1_2:-55220902 None:intergenic
GTTTGGTGAAGAAAGTGAGC+GGG 0.543461 1_2:-55220931 None:intergenic
CCTCAGAAAATGCAATCGGA+TGG 0.564403 1_2:+55221185 Msa0078000:exon
AAGAGCTGGAAAAGCTTGAG+AGG 0.574159 1_2:+55223310 Msa0078000:CDS
CATTTAAGAAATGTAAATGG+AGG 0.575476 1_2:+55223867 Msa0078000:three_prime_UTR
ATTTAAGAAATGTAAATGGA+GGG 0.576481 1_2:+55223868 Msa0078000:three_prime_UTR
TTTAAGAAATGTAAATGGAG+GGG 0.587286 1_2:+55223869 Msa0078000:three_prime_UTR
CATGGTCAACACTTAATGGG+TGG 0.588204 1_2:+55221035 Msa0078000:five_prime_UTR
ATGGTCAACACTTAATGGGT+GGG 0.597116 1_2:+55221036 Msa0078000:five_prime_UTR
GGGATTTGTAGTGTAGAATG+TGG 0.597864 1_2:-55220903 None:intergenic
CTCAGAAAATGCAATCGGAT+GGG 0.599299 1_2:+55221186 Msa0078000:exon
GATTTGTAGTGTAGAATGTG+GGG 0.624298 1_2:-55220901 None:intergenic
AAGACTGAGACTGAACAAAG+TGG 0.627696 1_2:-55221232 None:intergenic
GAAGGACCCCAAGATTCCAA+AGG 0.632878 1_2:+55223645 Msa0078000:CDS
AGACTGAGACTGAACAAAGT+GGG 0.647300 1_2:-55221231 None:intergenic
CAACAGAGCGGAATCTATGG+TGG 0.649195 1_2:-55221000 None:intergenic
ATTTGTAGTGTAGAATGTGG+GGG 0.661830 1_2:-55220900 None:intergenic
TTTGTAGTGTAGAATGTGGG+GGG 0.665344 1_2:-55220899 None:intergenic
TGTTTGGTGAAGAAAGTGAG+CGG 0.672165 1_2:-55220932 None:intergenic
AACGGTTGGAACAAGAAACA+AGG 0.682214 1_2:+55221297 Msa0078000:CDS
TAATGAAAGAAACAACAGAG+CGG 0.773565 1_2:-55221012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTCTTTTTTTAATAATT+GGG - chr1_2:55222059-55222078 None:intergenic 10.0%
!!! AAAGTTCTTTTTTTAATAAT+TGG - chr1_2:55222060-55222079 None:intergenic 10.0%
!!! TCAATTAAAGCTAAATTTTA+AGG - chr1_2:55221477-55221496 None:intergenic 15.0%
!!! TGAATTTTTTGTTTTTAGTT+TGG + chr1_2:55221522-55221541 Msa0078000:intron 15.0%
!!! AAAAAAAGAACTTTTCTTTT+TGG + chr1_2:55222066-55222085 Msa0078000:intron 15.0%
!!! AAAAAAGAACTTTTCTTTTT+GGG + chr1_2:55222067-55222086 Msa0078000:intron 15.0%
!! AAAATAATCTTAACTAGTTA+AGG - chr1_2:55223083-55223102 None:intergenic 15.0%
!! TTACAAAAGTAATTTATCAA+AGG - chr1_2:55223553-55223572 None:intergenic 15.0%
!! TTAACGAGTAATAGTAAAAT+GGG + chr1_2:55221429-55221448 Msa0078000:intron 20.0%
!!! TTTAGCTTTAATTGATTTCT+TGG + chr1_2:55221482-55221501 Msa0078000:intron 20.0%
!!! TTAGCTTTAATTGATTTCTT+GGG + chr1_2:55221483-55221502 Msa0078000:intron 20.0%
!!! TCAACTTTTGATAGTTAAAA+GGG + chr1_2:55221655-55221674 Msa0078000:intron 20.0%
!!! AATTTTTAGTGACTATGTTA+TGG + chr1_2:55221775-55221794 Msa0078000:intron 20.0%
!!! AAAAAGAACTTTTCTTTTTG+GGG + chr1_2:55222068-55222087 Msa0078000:intron 20.0%
!!! TAAAATTTTGTTGTGTTTGT+TGG - chr1_2:55222629-55222648 None:intergenic 20.0%
!! TTGATCTTATTAAAGATTCA+GGG + chr1_2:55222655-55222674 Msa0078000:intron 20.0%
!! ATTCACTATAAATTCAATGT+AGG + chr1_2:55223287-55223306 Msa0078000:intron 20.0%
!! AAATAAACTCACAAAATTTC+AGG - chr1_2:55223744-55223763 None:intergenic 20.0%
!! GATCATTTAAGAAATGTAAA+TGG + chr1_2:55223864-55223883 Msa0078000:three_prime_UTR 20.0%
!! ATTTAAGAAATGTAAATGGA+GGG + chr1_2:55223868-55223887 Msa0078000:three_prime_UTR 20.0%
! TTGAAGTGAAAAAATATGAC+CGG - chr1_2:55221077-55221096 None:intergenic 25.0%
! GTTAACGAGTAATAGTAAAA+TGG + chr1_2:55221428-55221447 Msa0078000:intron 25.0%
! ACTGAAAAGTAATGACAATT+TGG + chr1_2:55221561-55221580 Msa0078000:intron 25.0%
! CTGAAAAGTAATGACAATTT+GGG + chr1_2:55221562-55221581 Msa0078000:intron 25.0%
! TGAAAAGTAATGACAATTTG+GGG + chr1_2:55221563-55221582 Msa0078000:intron 25.0%
!!! GTCAACTTTTGATAGTTAAA+AGG + chr1_2:55221654-55221673 Msa0078000:intron 25.0%
! ATGAGTAGAACAAATATTCA+AGG - chr1_2:55221740-55221759 None:intergenic 25.0%
! TTTGTAATAACAGCAACATA+AGG + chr1_2:55222215-55222234 Msa0078000:intron 25.0%
! AGAAAGAAAGACGAAAATTA+AGG - chr1_2:55222285-55222304 None:intergenic 25.0%
! CTTGATCTTATTAAAGATTC+AGG + chr1_2:55222654-55222673 Msa0078000:intron 25.0%
! GCAAATTACGAATTAATCAA+GGG - chr1_2:55222959-55222978 None:intergenic 25.0%
!!! CATTCATTTCTGAGATATAT+AGG + chr1_2:55223151-55223170 Msa0078000:intron 25.0%
!! ATCATCTTTTCTGTAAAAAG+TGG - chr1_2:55223199-55223218 None:intergenic 25.0%
!! TTTTACAGAAAAGATGATTG+TGG + chr1_2:55223201-55223220 Msa0078000:intron 25.0%
! TCAAATTTGATCAGACATTA+TGG - chr1_2:55223390-55223409 None:intergenic 25.0%
!! GATTTTACAATGGAAGTAAT+GGG - chr1_2:55223484-55223503 None:intergenic 25.0%
!! AGATTTTACAATGGAAGTAA+TGG - chr1_2:55223485-55223504 None:intergenic 25.0%
! CATTTAAGAAATGTAAATGG+AGG + chr1_2:55223867-55223886 Msa0078000:three_prime_UTR 25.0%
! TTTAAGAAATGTAAATGGAG+GGG + chr1_2:55223869-55223888 Msa0078000:three_prime_UTR 25.0%
!!! AACTGGTTTGAAATAGTTAA+GGG + chr1_2:55223902-55223921 Msa0078000:three_prime_UTR 25.0%
TAATGAAAGAAACAACAGAG+CGG - chr1_2:55221015-55221034 None:intergenic 30.0%
!! CTGTTGTTTCTTTCATTACA+TGG + chr1_2:55221017-55221036 Msa0078000:five_prime_UTR 30.0%
ATTACATGGTCAACACTTAA+TGG + chr1_2:55221031-55221050 Msa0078000:five_prime_UTR 30.0%
TTACATGGTCAACACTTAAT+GGG + chr1_2:55221032-55221051 Msa0078000:five_prime_UTR 30.0%
TGAAGTGAAAAAATATGACC+GGG - chr1_2:55221076-55221095 None:intergenic 30.0%
AATAGCTTGATGAAGCTAAA+GGG - chr1_2:55221129-55221148 None:intergenic 30.0%
AAATAGCTTGATGAAGCTAA+AGG - chr1_2:55221130-55221149 None:intergenic 30.0%
!!! AGTCTTTTTCAGATACAAGA+GGG + chr1_2:55221249-55221268 Msa0078000:CDS 30.0%
! TCTTCATCTTTACCATGTTT+TGG + chr1_2:55221353-55221372 Msa0078000:intron 30.0%
AAGAACAAAACTCCAAAACA+TGG - chr1_2:55221368-55221387 None:intergenic 30.0%
! TTCCATGTACTTCAAGTTTA+AGG + chr1_2:55221632-55221651 Msa0078000:intron 30.0%
!! TTCGTCTTGTTCTAACATTT+TGG - chr1_2:55221888-55221907 None:intergenic 30.0%
TAAACACACACTATTAGAGT+AGG + chr1_2:55221977-55221996 Msa0078000:intron 30.0%
ACGAAAATTAAGGCGAAAAA+TGG - chr1_2:55222275-55222294 None:intergenic 30.0%
TGTGCCATCAAACAAAAAAA+TGG + chr1_2:55222470-55222489 Msa0078000:intron 30.0%
GTGCCATCAAACAAAAAAAT+GGG + chr1_2:55222471-55222490 Msa0078000:intron 30.0%
CTTGTGTAGAAAATATGGTA+AGG - chr1_2:55222571-55222590 None:intergenic 30.0%
! TACCATATTTTCTACACAAG+AGG + chr1_2:55222571-55222590 Msa0078000:intron 30.0%
AACCTCTTGTGTAGAAAATA+TGG - chr1_2:55222576-55222595 None:intergenic 30.0%
GGATAGACATTTATCAGTAA+TGG - chr1_2:55222704-55222723 None:intergenic 30.0%
AATTACGAATTAATCAAGGG+AGG - chr1_2:55222956-55222975 None:intergenic 30.0%
GGCAAATTACGAATTAATCA+AGG - chr1_2:55222960-55222979 None:intergenic 30.0%
! ATGTCTGAAGTTGATTGATA+AGG + chr1_2:55222984-55223003 Msa0078000:intron 30.0%
ATAAGCCAGTTACCTAAAAT+TGG - chr1_2:55223013-55223032 None:intergenic 30.0%
!!! TATATAGGTTGTTTTTCCAG+CGG + chr1_2:55223166-55223185 Msa0078000:intron 30.0%
! TCTTTTCTGTAAAAAGTGGT+TGG - chr1_2:55223195-55223214 None:intergenic 30.0%
CGATTAAGTTTGAATTTCTC+TGG + chr1_2:55223413-55223432 Msa0078000:intron 30.0%
! TGGCATAAGAGATTTTACAA+TGG - chr1_2:55223494-55223513 None:intergenic 30.0%
TAGCATTAAACACTAGAAGT+TGG - chr1_2:55223514-55223533 None:intergenic 30.0%
CTATCCCATATAGGATTTAA+GGG - chr1_2:55223618-55223637 None:intergenic 30.0%
TCTATCCCATATAGGATTTA+AGG - chr1_2:55223619-55223638 None:intergenic 30.0%
TAAATCCTATATGGGATAGA+TGG + chr1_2:55223619-55223638 Msa0078000:CDS 30.0%
AGGGAAAAAAACGTAGAATT+TGG - chr1_2:55223705-55223724 None:intergenic 30.0%
!! TTTTCCCTTTAATTCGAGTT+TGG + chr1_2:55223717-55223736 Msa0078000:three_prime_UTR 30.0%
TTTCTTAAATGATCATCGAC+TGG - chr1_2:55223858-55223877 None:intergenic 30.0%
!! CAACTGGTTTGAAATAGTTA+AGG + chr1_2:55223901-55223920 Msa0078000:three_prime_UTR 30.0%
ATTTGTAGTGTAGAATGTGG+GGG - chr1_2:55220903-55220922 None:intergenic 35.0%
GATTTGTAGTGTAGAATGTG+GGG - chr1_2:55220904-55220923 None:intergenic 35.0%
GGATTTGTAGTGTAGAATGT+GGG - chr1_2:55220905-55220924 None:intergenic 35.0%
GAAGTGAAAAAATATGACCG+GGG - chr1_2:55221075-55221094 None:intergenic 35.0%
GCTAAGATTGTTTGTAGCAA+TGG - chr1_2:55221166-55221185 None:intergenic 35.0%
TTAGCCTCAGAAAATGCAAT+CGG + chr1_2:55221181-55221200 Msa0078000:exon 35.0%
!!! CAGTCTTTTTCAGATACAAG+AGG + chr1_2:55221248-55221267 Msa0078000:CDS 35.0%
GGATACATGCTGAACTTAAA+CGG + chr1_2:55221279-55221298 Msa0078000:CDS 35.0%
! ACAAGAAACAAGGTACTTAG+AGG + chr1_2:55221307-55221326 Msa0078000:CDS 35.0%
ATTTCTTGGGATACTCTTCT+GGG + chr1_2:55221496-55221515 Msa0078000:intron 35.0%
GGGAATTATGTTGTTGTGAT+AGG + chr1_2:55221583-55221602 Msa0078000:intron 35.0%
TTATGTTGTTGTGATAGGAG+AGG + chr1_2:55221588-55221607 Msa0078000:intron 35.0%
!! ATAGGAGAGGTACTTGTAAT+TGG + chr1_2:55221601-55221620 Msa0078000:intron 35.0%
!! TAGGAGAGGTACTTGTAATT+GGG + chr1_2:55221602-55221621 Msa0078000:intron 35.0%
AACTTGAAGTACATGGAAGA+TGG - chr1_2:55221630-55221649 None:intergenic 35.0%
GACCTTAAACTTGAAGTACA+TGG - chr1_2:55221637-55221656 None:intergenic 35.0%
GACAAAACATTTGCAACATG+AGG - chr1_2:55221718-55221737 None:intergenic 35.0%
ACAAAGTCTCTCATAGCAAT+GGG - chr1_2:55222107-55222126 None:intergenic 35.0%
CCTCAAATTGTTCAAAAGTC+AGG - chr1_2:55222351-55222370 None:intergenic 35.0%
! CCTGACTTTTGAACAATTTG+AGG + chr1_2:55222348-55222367 Msa0078000:intron 35.0%
GTAGTTGCGTTATGCTTATT+TGG + chr1_2:55222391-55222410 Msa0078000:intron 35.0%
!!! CTGCCCATTTTTTTGTTTGA+TGG - chr1_2:55222477-55222496 None:intergenic 35.0%
! AGGGTCTTATGAAAGATTCA+GGG + chr1_2:55222602-55222621 Msa0078000:intron 35.0%
GGGTCTTGATAAATTAGTGT+TGG + chr1_2:55222675-55222694 Msa0078000:intron 35.0%
TCTAGATGACATGTTCTGTT+TGG - chr1_2:55222725-55222744 None:intergenic 35.0%
TACCTGCGTTGGAATATTTA+AGG + chr1_2:55222757-55222776 Msa0078000:intron 35.0%
AACCTTAAATATTCCAACGC+AGG - chr1_2:55222762-55222781 None:intergenic 35.0%
! CAAGAACTCAAAAAAGGTGT+TGG - chr1_2:55222807-55222826 None:intergenic 35.0%
GCAGAACAAGAACTCAAAAA+AGG - chr1_2:55222813-55222832 None:intergenic 35.0%
!!! TTTTGAGTTCTTGTTCTGCT+CGG + chr1_2:55222814-55222833 Msa0078000:intron 35.0%
TGTTTAAGTCAATTGCACAG+GGG - chr1_2:55222884-55222903 None:intergenic 35.0%
GTGTTTAAGTCAATTGCACA+GGG - chr1_2:55222885-55222904 None:intergenic 35.0%
! GCAATTGACTTAAACACCAA+TGG + chr1_2:55222888-55222907 Msa0078000:intron 35.0%
TATTTGCATACTGTGTCCAT+TGG - chr1_2:55222907-55222926 None:intergenic 35.0%
AGGAGGGAACTGAAAAATTA+TGG - chr1_2:55222936-55222955 None:intergenic 35.0%
! TCTGAAGTTGATTGATAAGG+TGG + chr1_2:55222987-55223006 Msa0078000:intron 35.0%
! TTGATAAGGTGGCCAATTTT+AGG + chr1_2:55222998-55223017 Msa0078000:intron 35.0%
CAGATAATTAGTGCTCATGA+TGG - chr1_2:55223110-55223129 None:intergenic 35.0%
TCATGAGCACTAATTATCTG+TGG + chr1_2:55223110-55223129 Msa0078000:intron 35.0%
TTTCTGTAAAAAGTGGTTGG+AGG - chr1_2:55223192-55223211 None:intergenic 35.0%
AAATTCAATGTAGGAAGAGC+TGG + chr1_2:55223296-55223315 Msa0078000:intron 35.0%
TTGGTCCCTTAAATCCTATA+TGG + chr1_2:55223610-55223629 Msa0078000:CDS 35.0%
TGGTCCCTTAAATCCTATAT+GGG + chr1_2:55223611-55223630 Msa0078000:CDS 35.0%
TCAAACCATCTATCCCATAT+AGG - chr1_2:55223627-55223646 None:intergenic 35.0%
ATATGGGATAGATGGTTTGA+AGG + chr1_2:55223627-55223646 Msa0078000:CDS 35.0%
AGGACCAAACTCGAATTAAA+GGG - chr1_2:55223724-55223743 None:intergenic 35.0%
TTTGTAGTGTAGAATGTGGG+GGG - chr1_2:55220902-55220921 None:intergenic 40.0%
GGGATTTGTAGTGTAGAATG+TGG - chr1_2:55220906-55220925 None:intergenic 40.0%
! TGTTTGGTGAAGAAAGTGAG+CGG - chr1_2:55220935-55220954 None:intergenic 40.0%
! TGGTTAGAAGTGCGTTTGTT+TGG - chr1_2:55220951-55220970 None:intergenic 40.0%
! GACAGAGAAAGAGACAGTTT+TGG - chr1_2:55220971-55220990 None:intergenic 40.0%
AAACAACAGAGCGGAATCTA+TGG - chr1_2:55221006-55221025 None:intergenic 40.0%
! ATGGTCAACACTTAATGGGT+GGG + chr1_2:55221036-55221055 Msa0078000:five_prime_UTR 40.0%
CTCAGAAAATGCAATCGGAT+GGG + chr1_2:55221186-55221205 Msa0078000:exon 40.0%
AGACTGAGACTGAACAAAGT+GGG - chr1_2:55221234-55221253 None:intergenic 40.0%
AAGACTGAGACTGAACAAAG+TGG - chr1_2:55221235-55221254 None:intergenic 40.0%
CAGATACAAGAGGGAAACAT+AGG + chr1_2:55221258-55221277 Msa0078000:CDS 40.0%
ACATGCTGAACTTAAACGGT+TGG + chr1_2:55221283-55221302 Msa0078000:CDS 40.0%
AACGGTTGGAACAAGAAACA+AGG + chr1_2:55221297-55221316 Msa0078000:CDS 40.0%
! GAAACAAGGTACTTAGAGGT+TGG + chr1_2:55221311-55221330 Msa0078000:intron 40.0%
GATTTCTTGGGATACTCTTC+TGG + chr1_2:55221495-55221514 Msa0078000:intron 40.0%
!! AGGAGAGGTACTTGTAATTG+GGG + chr1_2:55221603-55221622 Msa0078000:intron 40.0%
!!! TTTTCTTTTTGGGGTAGCCA+AGG + chr1_2:55222077-55222096 Msa0078000:intron 40.0%
CAAAGTCTCTCATAGCAATG+GGG - chr1_2:55222106-55222125 None:intergenic 40.0%
GACAAAGTCTCTCATAGCAA+TGG - chr1_2:55222108-55222127 None:intergenic 40.0%
GAGACTTGATGTTTGACGTT+TGG + chr1_2:55222315-55222334 Msa0078000:intron 40.0%
! GTCTCTTTTGCTCACTCTAT+AGG - chr1_2:55222423-55222442 None:intergenic 40.0%
GCACATGTTTGTATGCACAT+TGG + chr1_2:55222446-55222465 Msa0078000:intron 40.0%
GTTGCGTACAAAAGACCAAA+TGG - chr1_2:55222549-55222568 None:intergenic 40.0%
! TACACAAGAGGTTGTTTCCA+GGG + chr1_2:55222583-55222602 Msa0078000:intron 40.0%
CTGAATCTTTCATAAGACCC+TGG - chr1_2:55222603-55222622 None:intergenic 40.0%
! CAGGGTCTTATGAAAGATTC+AGG + chr1_2:55222601-55222620 Msa0078000:intron 40.0%
!! AACTCAAAAAAGGTGTTGGC+AGG - chr1_2:55222803-55222822 None:intergenic 40.0%
TTCTTGTTCTGCTCGGTTAA+GGG + chr1_2:55222821-55222840 Msa0078000:intron 40.0%
GGGGATTTGAGAAACATCAA+TGG - chr1_2:55222865-55222884 None:intergenic 40.0%
GGTGTTTAAGTCAATTGCAC+AGG - chr1_2:55222886-55222905 None:intergenic 40.0%
ACGAATTAATCAAGGGAGGA+GGG - chr1_2:55222952-55222971 None:intergenic 40.0%
TACGAATTAATCAAGGGAGG+AGG - chr1_2:55222953-55222972 None:intergenic 40.0%
CAATCAACTTCAGACATTGC+TGG - chr1_2:55222981-55223000 None:intergenic 40.0%
! AACTGGCTTATATCAGTCGT+TGG + chr1_2:55223022-55223041 Msa0078000:intron 40.0%
TGAGCACTAATTATCTGTGG+AGG + chr1_2:55223113-55223132 Msa0078000:intron 40.0%
!! TACAATGGAAGTAATGGGTC+AGG - chr1_2:55223479-55223498 None:intergenic 40.0%
TTCTGCTTTGACAGAACAGT+TGG + chr1_2:55223591-55223610 Msa0078000:intron 40.0%
CAGGACCAAACTCGAATTAA+AGG - chr1_2:55223725-55223744 None:intergenic 40.0%
! AAGAAAGTGAGCGGGTTTGA+GGG - chr1_2:55220926-55220945 None:intergenic 45.0%
! GTTTGGTGAAGAAAGTGAGC+GGG - chr1_2:55220934-55220953 None:intergenic 45.0%
CATGGTCAACACTTAATGGG+TGG + chr1_2:55221035-55221054 Msa0078000:five_prime_UTR 45.0%
TATGACCGGGGAATGTGAAT+GGG - chr1_2:55221063-55221082 None:intergenic 45.0%
ATATGACCGGGGAATGTGAA+TGG - chr1_2:55221064-55221083 None:intergenic 45.0%
! CCATCCGATTGCATTTTCTG+AGG - chr1_2:55221188-55221207 None:intergenic 45.0%
CCTCAGAAAATGCAATCGGA+TGG + chr1_2:55221185-55221204 Msa0078000:exon 45.0%
GCTATGAGAGACTTTGTCTC+TGG + chr1_2:55222110-55222129 Msa0078000:intron 45.0%
! AGAGACTTTGTCTCTGGTTC+AGG + chr1_2:55222116-55222135 Msa0078000:intron 45.0%
! GAGACTTTGTCTCTGGTTCA+GGG + chr1_2:55222117-55222136 Msa0078000:intron 45.0%
! AGACTTTGTCTCTGGTTCAG+GGG + chr1_2:55222118-55222137 Msa0078000:intron 45.0%
! GGATGAGTTTTGCTGAGACT+TGG + chr1_2:55222369-55222388 Msa0078000:intron 45.0%
! CTACACAAGAGGTTGTTTCC+AGG + chr1_2:55222582-55222601 Msa0078000:intron 45.0%
TGATGTGACATTACCTGCGT+TGG + chr1_2:55222746-55222765 Msa0078000:intron 45.0%
GTTCTTGTTCTGCTCGGTTA+AGG + chr1_2:55222820-55222839 Msa0078000:intron 45.0%
!! GGTGGCCAATTTTAGGTAAC+TGG + chr1_2:55223005-55223024 Msa0078000:intron 45.0%
AAGAGCTGGAAAAGCTTGAG+AGG + chr1_2:55223310-55223329 Msa0078000:CDS 45.0%
!!! TCTCTGGTGTTTGTTTTGCC+AGG + chr1_2:55223429-55223448 Msa0078000:intron 45.0%
!!! GTTTGTTTTGCCAGGATGCT+TGG + chr1_2:55223437-55223456 Msa0078000:intron 45.0%
TGCTTGGCAATGTCGAGAAA+AGG + chr1_2:55223453-55223472 Msa0078000:CDS 45.0%
GTAGAATGTGGGGGGTGAAA+AGG - chr1_2:55220894-55220913 None:intergenic 50.0%
! GAAGAAAGTGAGCGGGTTTG+AGG - chr1_2:55220927-55220946 None:intergenic 50.0%
GAGCGGAATCTATGGTGGTT+TGG - chr1_2:55220998-55221017 None:intergenic 50.0%
CAACAGAGCGGAATCTATGG+TGG - chr1_2:55221003-55221022 None:intergenic 50.0%
AAAGTGGGTCGTCGGGTTAT+CGG - chr1_2:55221219-55221238 None:intergenic 50.0%
ACTGAACAAAGTGGGTCGTC+GGG - chr1_2:55221226-55221245 None:intergenic 50.0%
GACTGAACAAAGTGGGTCGT+CGG - chr1_2:55221227-55221246 None:intergenic 50.0%
AGTCTCTCATAGCAATGGGG+TGG - chr1_2:55222103-55222122 None:intergenic 50.0%
TGGTTCAGGGGTCTTCACTT+AGG + chr1_2:55222130-55222149 Msa0078000:intron 50.0%
!! ATGCGGGAGCATTAGTGCAA+CGG - chr1_2:55222501-55222520 None:intergenic 50.0%
GCTGGAAAAGCTTGAGAGGA+TGG + chr1_2:55223314-55223333 Msa0078000:CDS 50.0%
GAAGGACCCCAAGATTCCAA+AGG + chr1_2:55223645-55223664 Msa0078000:CDS 50.0%
!! CAGCAGCCTTTGGAATCTTG+GGG - chr1_2:55223654-55223673 None:intergenic 50.0%
!! GCAGCAGCCTTTGGAATCTT+GGG - chr1_2:55223655-55223674 None:intergenic 50.0%
!! TGCAGCAGCCTTTGGAATCT+TGG - chr1_2:55223656-55223675 None:intergenic 50.0%
TGGGACCCATTCACATTCCC+CGG + chr1_2:55221055-55221074 Msa0078000:five_prime_UTR 55.0%
TCATAGCAATGGGGTGGCCT+TGG - chr1_2:55222097-55222116 None:intergenic 55.0%
!! TGCGGGAGCATTAGTGCAAC+GGG - chr1_2:55222500-55222519 None:intergenic 55.0%
ACTAATGCTCCCGCATACGC+AGG + chr1_2:55222505-55222524 Msa0078000:intron 55.0%
CTAATGCTCCCGCATACGCA+GGG + chr1_2:55222506-55222525 Msa0078000:intron 55.0%
CAAATGGTGAGACCCCTTCC+TGG - chr1_2:55222533-55222552 None:intergenic 55.0%
CAGGAAGGGGTCTCACCATT+TGG + chr1_2:55222531-55222550 Msa0078000:intron 55.0%
AAAAAGTGGTTGGAGGCCGC+TGG - chr1_2:55223185-55223204 None:intergenic 55.0%
CTCGACATTGCCAAGCATCC+TGG - chr1_2:55223450-55223469 None:intergenic 55.0%
CCAACATCTGCAGCAGCCTT+TGG - chr1_2:55223664-55223683 None:intergenic 55.0%
CCAAAGGCTGCTGCAGATGT+TGG + chr1_2:55223661-55223680 Msa0078000:CDS 55.0%
GGAGGGGTGAGTATCTCAAC+TGG + chr1_2:55223885-55223904 Msa0078000:three_prime_UTR 55.0%
TTCCTGGACCCTGCGTATGC+GGG - chr1_2:55222517-55222536 None:intergenic 60.0%
CTTCCTGGACCCTGCGTATG+CGG - chr1_2:55222518-55222537 None:intergenic 60.0%
GCATACGCAGGGTCCAGGAA+GGG + chr1_2:55222517-55222536 Msa0078000:intron 60.0%
CATACGCAGGGTCCAGGAAG+GGG + chr1_2:55222518-55222537 Msa0078000:intron 60.0%
CGCATACGCAGGGTCCAGGA+AGG + chr1_2:55222516-55222535 Msa0078000:intron 65.0%
CTCCCGCATACGCAGGGTCC+AGG + chr1_2:55222512-55222531 Msa0078000:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55220841 55223928 55220841 ID=Msa0078000;Name=Msa0078000
chr1_2 mRNA 55220841 55223928 55220841 ID=Msa0078000-mRNA-1;Parent=Msa0078000;Name=Msa0078000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=353|1|1|1|1|1|4|236|106
chr1_2 exon 55220841 55221328 55220841 ID=Msa0078000-mRNA-1:exon:17186;Parent=Msa0078000-mRNA-1
chr1_2 exon 55223309 55223361 55223309 ID=Msa0078000-mRNA-1:exon:17187;Parent=Msa0078000-mRNA-1
chr1_2 exon 55223451 55223495 55223451 ID=Msa0078000-mRNA-1:exon:17188;Parent=Msa0078000-mRNA-1
chr1_2 exon 55223605 55223928 55223605 ID=Msa0078000-mRNA-1:exon:17189;Parent=Msa0078000-mRNA-1
chr1_2 five_prime_UTR 55220841 55221193 55220841 ID=Msa0078000-mRNA-1:five_prime_utr;Parent=Msa0078000-mRNA-1
chr1_2 CDS 55221194 55221328 55221194 ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1
chr1_2 CDS 55223309 55223361 55223309 ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1
chr1_2 CDS 55223451 55223495 55223451 ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1
chr1_2 CDS 55223605 55223692 55223605 ID=Msa0078000-mRNA-1:cds;Parent=Msa0078000-mRNA-1
chr1_2 three_prime_UTR 55223693 55223928 55223693 ID=Msa0078000-mRNA-1:three_prime_utr;Parent=Msa0078000-mRNA-1
Gene Sequence

>Msa0078000

ATGCAATCGGATGGGTCTGAATCCGATAACCCGACGACCCACTTTGTTCAGTCTCAGTCTTTTTCAGATACAAGAGGGAAACATAGGATACATGCTGAACTTAAACGGTTGGAACAAGAAACAAGGTACTTAGAGGAAGAGCTGGAAAAGCTTGAGAGGATGGACAAAGCATCTGCATCGTGTAAAGAGATGCTTGGCAATGTCGAGAAAAGGCCTGACCCATTACTTCCATTAACAGTTGGTCCCTTAAATCCTATATGGGATAGATGGTTTGAAGGACCCCAAGATTCCAAAGGCTGCTGCAGATGTTGGATTCTCTGA

Protein sequence

>Msa0078000

MQSDGSESDNPTTHFVQSQSFSDTRGKHRIHAELKRLEQETRYLEEELEKLERMDKASASCKEMLGNVEKRPDPLLPLTVGPLNPIWDRWFEGPQDSKGCCRCWIL*