AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1071320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071320 MtrunA17_Chr5g0395301 99.222 257 2 0 1 257 1 257 0.0 524
Msa1071320 MtrunA17_Chr5g0448431 28.289 152 86 3 17 168 14 142 9.47e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071320 AT5G16800.2 59.459 259 101 2 1 257 14 270 7.25e-107 310
Msa1071320 AT5G16800.3 56.870 262 106 3 1 257 14 273 1.60e-97 286
Msa1071320 AT5G16800.1 61.062 226 82 1 1 226 14 233 6.51e-96 281
Msa1071320 AT3G02980.1 60.181 221 87 1 12 232 25 244 7.60e-95 279
Msa1071320 AT3G02980.2 55.333 150 66 1 83 232 26 174 2.36e-56 178
Msa1071320 AT5G11340.1 27.607 163 94 4 17 179 14 152 2.98e-14 68.9

Find 83 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTATCAAGTGTTAAA+TGG 0.185040 7_2:-67796393 Msa1071320:five_prime_UTR
TTGATTGACTAGACCCTTTC+GGG 0.206622 7_2:+67796260 None:intergenic
CTGTTGATTATTGTCGTAAT+TGG 0.221186 7_2:-67793286 Msa1071320:three_prime_UTR
TTATTCGTGCACTACGTAAA+TGG 0.221441 7_2:-67794260 Msa1071320:CDS
CTACGTGAAGAGTGGCTTTA+AGG 0.221630 7_2:-67793725 Msa1071320:CDS
ACATACAGTAAGTATAATTT+TGG 0.231091 7_2:+67793488 None:intergenic
GGCCAAAGTGATGAACTTAT+TGG 0.280025 7_2:-67795995 Msa1071320:CDS
AACAATCATCATAATCTTCT+TGG 0.297967 7_2:-67796767 Msa1071320:intron
GGGAGTAGTGGAAGCATATA+GGG 0.323949 7_2:-67794558 Msa1071320:CDS
CAGAGTAGTGACAATGAAAA+AGG 0.325536 7_2:+67796370 None:intergenic
TTTGATTGACTAGACCCTTT+CGG 0.334623 7_2:+67796259 None:intergenic
CACTAAAGTCTGGTCAGATT+TGG 0.334799 7_2:+67794595 None:intergenic
TATTCGTGCACTACGTAAAT+GGG 0.359781 7_2:-67794259 Msa1071320:CDS
TGGGAGTAGTGGAAGCATAT+AGG 0.379806 7_2:-67794559 Msa1071320:CDS
GCATATAGGGGCCTTGGAAT+AGG 0.403458 7_2:-67794545 Msa1071320:intron
AGTATTATCTTCTATAAGAA+TGG 0.411563 7_2:+67793350 None:intergenic
CACCAGCTTCTTCTTTGATA+CGG 0.412039 7_2:-67794448 Msa1071320:intron
ATGTGTGTGGCCTACAGTTT+TGG 0.417271 7_2:+67793424 None:intergenic
TCAAAATCAGACGGTCGTAT+AGG 0.418162 7_2:+67796223 None:intergenic
ATGGTAGATTATTTCCCATC+AGG 0.419207 7_2:-67796183 Msa1071320:intron
GTGGAAGCATATAGGGGCCT+TGG 0.421160 7_2:-67794551 Msa1071320:CDS
AGTTCATCACTTTGGCCATT+CGG 0.428159 7_2:+67796001 None:intergenic
CATTGTCACTACTCTGTGAA+TGG 0.432482 7_2:-67796363 Msa1071320:five_prime_UTR
TGGAAGTGGTTGTTGATGCT+TGG 0.446825 7_2:-67796343 Msa1071320:five_prime_UTR
ACCAGCTTCTTCTTTGATAC+GGG 0.449831 7_2:-67794447 Msa1071320:intron
CTATTCTGTCAGAATAAACT+TGG 0.453739 7_2:-67793463 Msa1071320:three_prime_UTR
CAAGTGTGTTAGAAAGCTGC+AGG 0.455738 7_2:-67794321 Msa1071320:CDS
ATTATGATGATTGTTTCGTT+CGG 0.467301 7_2:+67796775 None:intergenic
ATCCAATAAGTTCATCACTT+TGG 0.471996 7_2:+67795993 None:intergenic
AAATGAAAGAACATAGAGAA+GGG 0.480347 7_2:-67796858 Msa1071320:five_prime_UTR
AGCTGTGCAAGAACGAAGTT+AGG 0.483514 7_2:-67793690 Msa1071320:CDS
TGCACTTACAATGGCGAGCA+AGG 0.487162 7_2:+67794227 None:intergenic
TAAGTGGAAATAACGATCAA+TGG 0.489757 7_2:-67796287 Msa1071320:exon
GATCACAGCAAGTAGCGAAA+TGG 0.489793 7_2:+67796797 None:intergenic
TAAGTGTGATTGAATAGTAC+AGG 0.496458 7_2:+67793531 None:intergenic
AACTTCGTTCTTGCACAGCT+TGG 0.497962 7_2:+67793693 None:intergenic
GTATTATCTTCTATAAGAAT+GGG 0.503576 7_2:+67793351 None:intergenic
CAAATTATTTGACCATGGGT+TGG 0.512806 7_2:-67793376 Msa1071320:three_prime_UTR
TTGTAGATAGTGGATTTGCT+TGG 0.513932 7_2:-67794629 Msa1071320:intron
CGAAGATGTGGTGAACAGAC+GGG 0.516575 7_2:-67796059 Msa1071320:CDS
CACTACTCTGTGAATGGAAG+TGG 0.518401 7_2:-67796357 Msa1071320:five_prime_UTR
TTTAGTGTATGTTCTAACAC+TGG 0.518861 7_2:-67794579 Msa1071320:CDS
TTAGAACATACACTAAAGTC+TGG 0.520023 7_2:+67794585 None:intergenic
TTAACAAATTATTTGACCAT+GGG 0.522271 7_2:-67793380 Msa1071320:three_prime_UTR
TTGAGAGTGAGACAAGAGAA+TGG 0.529226 7_2:+67793635 None:intergenic
GATCAATGGTAAACCCGAAA+GGG 0.533764 7_2:-67796273 Msa1071320:exon
TTTAACAAATTATTTGACCA+TGG 0.535676 7_2:-67793381 Msa1071320:three_prime_UTR
TCGAAGATGTGGTGAACAGA+CGG 0.541792 7_2:-67796060 Msa1071320:CDS
CAGACGGGATATTGTGTCGT+GGG 0.543303 7_2:-67796044 Msa1071320:CDS
ACTTATAATTCTCACTAGAA+AGG 0.552289 7_2:-67793513 Msa1071320:three_prime_UTR
TGTTCTAACACTGGGAGTAG+TGG 0.563129 7_2:-67794570 Msa1071320:CDS
GAAATGAAAGAACATAGAGA+AGG 0.570309 7_2:-67796859 Msa1071320:five_prime_UTR
TGTTCTTGCAAAAGAAAGTG+AGG 0.573579 7_2:-67795954 Msa1071320:intron
GAAGAGTGGCTTTAAGGCAG+TGG 0.581385 7_2:-67793719 Msa1071320:CDS
AACATGGCAGTCGAGTCTAC+TGG 0.586352 7_2:-67793595 Msa1071320:CDS
CGATCAATGGTAAACCCGAA+AGG 0.590054 7_2:-67796274 Msa1071320:exon
TTGGCAGAAGTAGTAAGAGT+AGG 0.590269 7_2:-67793267 None:intergenic
ATGAAAGAACATAGAGAAGG+GGG 0.591351 7_2:-67796856 Msa1071320:five_prime_UTR
AGCTTCTTCTTTGATACGGG+AGG 0.591740 7_2:-67794444 Msa1071320:CDS
ACAAACTGCTACCTATTCCA+AGG 0.593056 7_2:+67794534 None:intergenic
TTAGTGTATGTTCTAACACT+GGG 0.599355 7_2:-67794578 Msa1071320:CDS
TTTGTAAGCTACGTGAAGAG+TGG 0.599551 7_2:-67793733 Msa1071320:CDS
ACACGATGATCTCACCTGAT+GGG 0.613102 7_2:+67796169 None:intergenic
ATTCGTGCACTACGTAAATG+GGG 0.616046 7_2:-67794258 Msa1071320:CDS
AGAGATGACACCAAAACTGT+AGG 0.623611 7_2:-67793434 Msa1071320:three_prime_UTR
GTTGATCTTAGTCGACCGAA+TGG 0.627310 7_2:-67796016 Msa1071320:CDS
ACGAAGTTAGGAAGATCTCA+AGG 0.631340 7_2:-67793678 Msa1071320:CDS
AATGAAAGAACATAGAGAAG+GGG 0.634502 7_2:-67796857 Msa1071320:five_prime_UTR
AGTTAGGAAGATCTCAAGGT+GGG 0.635024 7_2:-67793674 Msa1071320:CDS
GGAGTAGTGGAAGCATATAG+GGG 0.641948 7_2:-67794557 Msa1071320:CDS
TAAGAATGGGAGCCAACCCA+TGG 0.644300 7_2:+67793364 None:intergenic
AAGTGTGTTAGAAAGCTGCA+GGG 0.647080 7_2:-67794320 Msa1071320:CDS
TTCGTGCACTACGTAAATGG+GGG 0.654674 7_2:-67794257 Msa1071320:CDS
ACAGACGGGATATTGTGTCG+TGG 0.662598 7_2:-67796045 Msa1071320:CDS
TCACGTGCAAGTAAACCGCT+CGG 0.669384 7_2:+67794390 None:intergenic
AAGCATTCCAACGTGCCGAG+CGG 0.675262 7_2:-67794405 Msa1071320:CDS
ACAGCAAGTAGCGAAATGGA+AGG 0.676149 7_2:+67796801 None:intergenic
AGACGGGATATTGTGTCGTG+GGG 0.679193 7_2:-67796043 Msa1071320:CDS
AATACCCAACAAAAGAAACA+TGG 0.688655 7_2:-67793611 Msa1071320:CDS
TCTAAAACGTCAAAATCAGA+CGG 0.689832 7_2:+67796214 None:intergenic
AAGTAAACCGCTCGGCACGT+TGG 0.692398 7_2:+67794398 None:intergenic
AAGTTAGGAAGATCTCAAGG+TGG 0.739682 7_2:-67793675 Msa1071320:CDS
TTATTGGATTTGTAACAGCG+CGG 0.789219 7_2:-67795979 Msa1071320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTTATTTTAATATTCT+TGG - chr7_2:67794656-67794675 Msa1071320:intron 10.0%
!!! TTCTGAAAATTTTGTTTATT+TGG - chr7_2:67793701-67793720 Msa1071320:CDS 15.0%
!!! ATTTACTTGTTTTCTATAAA+GGG - chr7_2:67794326-67794345 Msa1071320:CDS 15.0%
!! TTAAAATAAATACTCCAAAT+GGG + chr7_2:67794650-67794669 None:intergenic 15.0%
!! ATTAAAATAAATACTCCAAA+TGG + chr7_2:67794651-67794670 None:intergenic 15.0%
!!! ATTTATTTTAATATTCTTGG+AGG - chr7_2:67794659-67794678 Msa1071320:intron 15.0%
!! ATATTGAAGTCTAATAAATT+CGG + chr7_2:67796254-67796273 None:intergenic 15.0%
!!! TTCCTTTTATCTATAAAAAA+CGG - chr7_2:67796312-67796331 Msa1071320:five_prime_UTR 15.0%
!! TGCATACAGTTATATATAAA+GGG + chr7_2:67794202-67794221 None:intergenic 20.0%
!! ATGCATACAGTTATATATAA+AGG + chr7_2:67794203-67794222 None:intergenic 20.0%
!!! GATTTACTTGTTTTCTATAA+AGG - chr7_2:67794325-67794344 Msa1071320:CDS 20.0%
!!! TTTACTTGTTTTCTATAAAG+GGG - chr7_2:67794327-67794346 Msa1071320:CDS 20.0%
!! TTGAAATATTACATCAAACA+TGG + chr7_2:67794516-67794535 None:intergenic 20.0%
!! ACTACAATATATATTCCTAA+TGG + chr7_2:67794776-67794795 None:intergenic 20.0%
!! ATTAGGAATATATATTGTAG+TGG - chr7_2:67794775-67794794 Msa1071320:intron 20.0%
!!! CATTTTGATTATAACTTCTA+TGG - chr7_2:67794816-67794835 Msa1071320:intron 20.0%
!!! CTACAGCATATATTTTTAAT+AGG + chr7_2:67794869-67794888 None:intergenic 20.0%
!!! TTTTTCATAACAAGTTGTAT+TGG - chr7_2:67795097-67795116 Msa1071320:intron 20.0%
!!! TTTTCATAACAAGTTGTATT+GGG - chr7_2:67795098-67795117 Msa1071320:intron 20.0%
!!! AAAAAAAAAAGAGTATTGTC+TGG + chr7_2:67795189-67795208 None:intergenic 20.0%
!! TTATTCACCAATTTATCAAT+TGG - chr7_2:67795305-67795324 Msa1071320:intron 20.0%
!! TATAACACCAATTGATAAAT+TGG + chr7_2:67795315-67795334 None:intergenic 20.0%
!! AATAAACAATTATCAGCAAA+AGG + chr7_2:67795457-67795476 None:intergenic 20.0%
!! AATATTATTCTTGTAGATAG+TGG - chr7_2:67795485-67795504 Msa1071320:intron 20.0%
!! ATAAAAATGAATCATAGTGT+TGG + chr7_2:67795848-67795867 None:intergenic 20.0%
!!! TAAAGAATACAAAACCTTTT+TGG + chr7_2:67796103-67796122 None:intergenic 20.0%
!!! TTCCGTTTTTTATAGATAAA+AGG + chr7_2:67796317-67796336 None:intergenic 20.0%
!! ATGGAAAATAAAATTCTCTA+AGG + chr7_2:67796343-67796362 None:intergenic 20.0%
!!! ACATACAGTAAGTATAATTT+TGG + chr7_2:67796639-67796658 None:intergenic 20.0%
!! TTTAACAAATTATTTGACCA+TGG - chr7_2:67796743-67796762 Msa1071320:intron 20.0%
!! TTAACAAATTATTTGACCAT+GGG - chr7_2:67796744-67796763 Msa1071320:intron 20.0%
!! GTATTATCTTCTATAAGAAT+GGG + chr7_2:67796776-67796795 None:intergenic 20.0%
!! AGTATTATCTTCTATAAGAA+TGG + chr7_2:67796777-67796796 None:intergenic 20.0%
! ATTATGATGATTGTTTCGTT+CGG + chr7_2:67793352-67793371 None:intergenic 25.0%
! AACAATCATCATAATCTTCT+TGG - chr7_2:67793357-67793376 Msa1071320:three_prime_UTR 25.0%
!!! TAATTTTAACAAACACGTGA+TGG + chr7_2:67793403-67793422 None:intergenic 25.0%
! ATCTACTATCATTCATTTCT+AGG - chr7_2:67793523-67793542 Msa1071320:three_prime_UTR 25.0%
! TGCAATTATCAAGTGTTAAA+TGG - chr7_2:67793731-67793750 Msa1071320:CDS 25.0%
!! GATATTTTCTGTGAATTAAG+TGG - chr7_2:67793821-67793840 Msa1071320:intron 25.0%
! GTCAATCAAAAATATGCTAT+CGG - chr7_2:67793878-67793897 Msa1071320:intron 25.0%
! TTAAGATGTTTATGAATCTC+AGG - chr7_2:67794025-67794044 Msa1071320:intron 25.0%
! GCATACAGTTATATATAAAG+GGG + chr7_2:67794201-67794220 None:intergenic 25.0%
!! ACATAACACATACTTTGTTT+GGG + chr7_2:67794404-67794423 None:intergenic 25.0%
!! AGATTGATAGACTCAAATTT+TGG + chr7_2:67794477-67794496 None:intergenic 25.0%
! TTTATGAGTAGTTATCCATT+AGG - chr7_2:67794758-67794777 Msa1071320:intron 25.0%
! ATCGAATGAGATAGTTTAAT+CGG + chr7_2:67795404-67795423 None:intergenic 25.0%
! GTTAAACTAAGAATTACAGA+GGG + chr7_2:67795435-67795454 None:intergenic 25.0%
! TAGATTACCAATCATATTAC+TGG + chr7_2:67795643-67795662 None:intergenic 25.0%
! TCAAAACGATTATTTGACAT+TGG - chr7_2:67796192-67796211 Msa1071320:CDS 25.0%
! TCAATATTGATGTATACTTG+TGG - chr7_2:67796267-67796286 Msa1071320:CDS 25.0%
! ACTTATAATTCTCACTAGAA+AGG - chr7_2:67796611-67796630 Msa1071320:intron 25.0%
!! TTTTACATTGTATATGTGTG+TGG + chr7_2:67796716-67796735 None:intergenic 25.0%
! ACAACAATTGACTCAAATCT+TGG + chr7_2:67793623-67793642 None:intergenic 30.0%
TAAGTGGAAATAACGATCAA+TGG - chr7_2:67793837-67793856 Msa1071320:intron 30.0%
! TCTAAAACGTCAAAATCAGA+CGG + chr7_2:67793913-67793932 None:intergenic 30.0%
ATCCAATAAGTTCATCACTT+TGG + chr7_2:67794134-67794153 None:intergenic 30.0%
GACATAACACATACTTTGTT+TGG + chr7_2:67794405-67794424 None:intergenic 30.0%
ATGTGTTATGTCTATGTTCA+AGG - chr7_2:67794413-67794432 Msa1071320:CDS 30.0%
!! AGACTCAAATTTTGGTATCA+AGG + chr7_2:67794469-67794488 None:intergenic 30.0%
!! TGATCCTTTTATTAGTCTGA+TGG - chr7_2:67794566-67794585 Msa1071320:CDS 30.0%
!! GATCCTTTTATTAGTCTGAT+GGG - chr7_2:67794567-67794586 Msa1071320:CDS 30.0%
TAAGCTAATGGAACATTATC+AGG + chr7_2:67794611-67794630 None:intergenic 30.0%
!!! TTAGTTGGGTTTTAAGCTAA+TGG + chr7_2:67794623-67794642 None:intergenic 30.0%
AAATAAATACTCCAAATGGG+AGG + chr7_2:67794647-67794666 None:intergenic 30.0%
AACTTCTATGGTGACAATTA+TGG - chr7_2:67794828-67794847 Msa1071320:intron 30.0%
ACTTCTATGGTGACAATTAT+GGG - chr7_2:67794829-67794848 Msa1071320:intron 30.0%
CTGTGTTTATGTTGTAAGTT+TGG - chr7_2:67795029-67795048 Msa1071320:intron 30.0%
!! ACAACTTGTTATGAAAAACC+AGG + chr7_2:67795095-67795114 None:intergenic 30.0%
ATTGTGTGATTCAATTGCAT+TGG - chr7_2:67795126-67795145 Msa1071320:intron 30.0%
AACTTACAATTCACACAAAC+TGG + chr7_2:67795163-67795182 None:intergenic 30.0%
GTTTGTGTGAATTGTAAGTT+TGG - chr7_2:67795163-67795182 Msa1071320:intron 30.0%
CAAGCAATACAACTAAGAAA+AGG + chr7_2:67795263-67795282 None:intergenic 30.0%
TTGAGTAAGTCATTACCTAA+TGG + chr7_2:67795365-67795384 None:intergenic 30.0%
GGTTAAACTAAGAATTACAG+AGG + chr7_2:67795436-67795455 None:intergenic 30.0%
TTAGAACATACACTAAAGTC+TGG + chr7_2:67795542-67795561 None:intergenic 30.0%
TTTAGTGTATGTTCTAACAC+TGG - chr7_2:67795545-67795564 Msa1071320:intron 30.0%
TTAGTGTATGTTCTAACACT+GGG - chr7_2:67795546-67795565 Msa1071320:intron 30.0%
TTACCAATCATATTACTGGA+GGG + chr7_2:67795639-67795658 None:intergenic 30.0%
ATTACCAATCATATTACTGG+AGG + chr7_2:67795640-67795659 None:intergenic 30.0%
!!! CAGGGCTTTTATTTTATCAA+TGG - chr7_2:67795822-67795841 Msa1071320:intron 30.0%
GAAAGATATTGCACTTACAA+TGG + chr7_2:67795909-67795928 None:intergenic 30.0%
TTGTAGTATTACTCCTTAAC+TGG - chr7_2:67796030-67796049 Msa1071320:CDS 30.0%
TGTAGTATTACTCCTTAACT+GGG - chr7_2:67796031-67796050 Msa1071320:CDS 30.0%
TTGGTTCAACTTCATTACTT+TGG + chr7_2:67796084-67796103 None:intergenic 30.0%
GTAATGAAGTTGAACCAAAA+AGG - chr7_2:67796086-67796105 Msa1071320:intron 30.0%
AGATAAAAGGAACCACAAAA+AGG + chr7_2:67796304-67796323 None:intergenic 30.0%
! AAGCTGTCTGAAATATGAAA+TGG + chr7_2:67796362-67796381 None:intergenic 30.0%
AATACCCAACAAAAGAAACA+TGG - chr7_2:67796513-67796532 Msa1071320:intron 30.0%
ACAGGAAAAAGAAAACTAAC+AGG + chr7_2:67796578-67796597 None:intergenic 30.0%
TAAGTGTGATTGAATAGTAC+AGG + chr7_2:67796596-67796615 None:intergenic 30.0%
CTATTCTGTCAGAATAAACT+TGG - chr7_2:67796661-67796680 Msa1071320:intron 30.0%
! CTGTTGATTATTGTCGTAAT+TGG - chr7_2:67796838-67796857 Msa1071320:five_prime_UTR 30.0%
ATGAAAGAACATAGAGAAGG+GGG - chr7_2:67793268-67793287 Msa1071320:three_prime_UTR 35.0%
CAGAGTAGTGACAATGAAAA+AGG + chr7_2:67793757-67793776 None:intergenic 35.0%
TTTGATTGACTAGACCCTTT+CGG + chr7_2:67793868-67793887 None:intergenic 35.0%
ATGGTAGATTATTTCCCATC+AGG - chr7_2:67793941-67793960 Msa1071320:intron 35.0%
!!! ATCTGCTTTTTTCGAAGATG+TGG - chr7_2:67794053-67794072 Msa1071320:intron 35.0%
TTATTGGATTTGTAACAGCG+CGG - chr7_2:67794145-67794164 Msa1071320:intron 35.0%
TGTTCTTGCAAAAGAAAGTG+AGG - chr7_2:67794170-67794189 Msa1071320:intron 35.0%
TTACTACTCTGTGGAAAGTA+TGG - chr7_2:67794285-67794304 Msa1071320:CDS 35.0%
TTAAGCAGACAGTGTAAACT+AGG + chr7_2:67794540-67794559 None:intergenic 35.0%
GTTCCCATCAGACTAATAAA+AGG + chr7_2:67794573-67794592 None:intergenic 35.0%
!! TATCAGGTCCATTTAGTTCT+TGG + chr7_2:67794595-67794614 None:intergenic 35.0%
ACTTATGATTCACTTATGCG+TGG - chr7_2:67794705-67794724 Msa1071320:intron 35.0%
TGAAACCGGGAAGAAAAAAA+AGG - chr7_2:67794985-67795004 Msa1071320:intron 35.0%
!!! CACTACCTTTTTTTTCTTCC+CGG + chr7_2:67794993-67795012 None:intergenic 35.0%
CAGAATATCAGAATACTCTC+TGG - chr7_2:67795053-67795072 Msa1071320:intron 35.0%
ATATCAGAATACTCTCTGGT+AGG - chr7_2:67795057-67795076 Msa1071320:intron 35.0%
TAAGTAGACAGAGAATACGT+AGG - chr7_2:67795217-67795236 Msa1071320:intron 35.0%
CGTAGGAGTAATACGAATTT+CGG - chr7_2:67795234-67795253 Msa1071320:intron 35.0%
!! GGTGTTATATCCTAGTCTTT+TGG - chr7_2:67795326-67795345 Msa1071320:intron 35.0%
ACTATCTCATTCGATAGAGT+AGG - chr7_2:67795409-67795428 Msa1071320:intron 35.0%
!! TTGTAGATAGTGGATTTGCT+TGG - chr7_2:67795495-67795514 Msa1071320:intron 35.0%
TTATTCGTGCACTACGTAAA+TGG - chr7_2:67795864-67795883 Msa1071320:intron 35.0%
TATTCGTGCACTACGTAAAT+GGG - chr7_2:67795865-67795884 Msa1071320:intron 35.0%
TCAGTCAGAATATAACAGCA+GGG + chr7_2:67795942-67795961 None:intergenic 35.0%
ATCAGTCAGAATATAACAGC+AGG + chr7_2:67795943-67795962 None:intergenic 35.0%
TTACTCCTTAACTGGGATAT+AGG - chr7_2:67796038-67796057 Msa1071320:CDS 35.0%
CAAAACCTATATCCCAGTTA+AGG + chr7_2:67796046-67796065 None:intergenic 35.0%
GAAACTGAAACCTAGTTAGA+CGG + chr7_2:67796232-67796251 None:intergenic 35.0%
! ACTGCCATGTTTCTTTTGTT+GGG + chr7_2:67796520-67796539 None:intergenic 35.0%
CAAATTATTTGACCATGGGT+TGG - chr7_2:67796748-67796767 Msa1071320:intron 35.0%
CACGCGAGAATTGAATTTGA+TGG + chr7_2:67793457-67793476 None:intergenic 40.0%
CATTGTCACTACTCTGTGAA+TGG - chr7_2:67793761-67793780 Msa1071320:intron 40.0%
GATCAATGGTAAACCCGAAA+GGG - chr7_2:67793851-67793870 Msa1071320:intron 40.0%
TTGATTGACTAGACCCTTTC+GGG + chr7_2:67793867-67793886 None:intergenic 40.0%
TCAAAATCAGACGGTCGTAT+AGG + chr7_2:67793904-67793923 None:intergenic 40.0%
!!! GACGTTTTAGAGCGTATTCA+TGG - chr7_2:67793922-67793941 Msa1071320:intron 40.0%
ATACTCAAACTTGAAGCCAG+TGG + chr7_2:67793988-67794007 None:intergenic 40.0%
AGTTCATCACTTTGGCCATT+CGG + chr7_2:67794126-67794145 None:intergenic 40.0%
GGCCAAAGTGATGAACTTAT+TGG - chr7_2:67794129-67794148 Msa1071320:intron 40.0%
! ACAGAACACGTTCTGTTTTC+AGG + chr7_2:67794263-67794282 None:intergenic 40.0%
GTTCTGTTCTTACTACTCTG+TGG - chr7_2:67794276-67794295 Msa1071320:CDS 40.0%
TCAAGGCAAGAGAAACTTGA+TGG - chr7_2:67794430-67794449 Msa1071320:CDS 40.0%
GTTTACACTGTCTGCTTAAG+TGG - chr7_2:67794541-67794560 Msa1071320:intron 40.0%
GATGGGAACCAAGAACTAAA+TGG - chr7_2:67794584-67794603 Msa1071320:CDS 40.0%
TCCAAATGGGAGGTTTAGTT+GGG + chr7_2:67794637-67794656 None:intergenic 40.0%
! TTCTTGGAGGAGAAAGCATA+TGG - chr7_2:67794672-67794691 Msa1071320:intron 40.0%
GGTAGTGCTGTGTAAAAAAC+TGG - chr7_2:67795006-67795025 Msa1071320:intron 40.0%
CACTAAAGTCTGGTCAGATT+TGG + chr7_2:67795532-67795551 None:intergenic 40.0%
ACAAACTGCTACCTATTCCA+AGG + chr7_2:67795593-67795612 None:intergenic 40.0%
AAGCCCTCCAGTAATATGAT+TGG - chr7_2:67795633-67795652 Msa1071320:intron 40.0%
CACCAGCTTCTTCTTTGATA+CGG - chr7_2:67795676-67795695 Msa1071320:intron 40.0%
ACCAGCTTCTTCTTTGATAC+GGG - chr7_2:67795677-67795696 Msa1071320:intron 40.0%
AAGTGTGTTAGAAAGCTGCA+GGG - chr7_2:67795804-67795823 Msa1071320:intron 40.0%
ATTCGTGCACTACGTAAATG+GGG - chr7_2:67795866-67795885 Msa1071320:intron 40.0%
! GTATACGCATAGCCTTTTTG+TGG - chr7_2:67796289-67796308 Msa1071320:exon 40.0%
TTTGTAAGCTACGTGAAGAG+TGG - chr7_2:67796391-67796410 Msa1071320:five_prime_UTR 40.0%
ACGAAGTTAGGAAGATCTCA+AGG - chr7_2:67796446-67796465 Msa1071320:intron 40.0%
AAGTTAGGAAGATCTCAAGG+TGG - chr7_2:67796449-67796468 Msa1071320:intron 40.0%
AGTTAGGAAGATCTCAAGGT+GGG - chr7_2:67796450-67796469 Msa1071320:intron 40.0%
TTGAGAGTGAGACAAGAGAA+TGG + chr7_2:67796492-67796511 None:intergenic 40.0%
! GACTGCCATGTTTCTTTTGT+TGG + chr7_2:67796521-67796540 None:intergenic 40.0%
!!! TACAGTTTTGGTGTCATCTC+TGG + chr7_2:67796691-67796710 None:intergenic 40.0%
AGAGATGACACCAAAACTGT+AGG - chr7_2:67796690-67796709 Msa1071320:intron 40.0%
ACAGCAAGTAGCGAAATGGA+AGG + chr7_2:67793326-67793345 None:intergenic 45.0%
GATCACAGCAAGTAGCGAAA+TGG + chr7_2:67793330-67793349 None:intergenic 45.0%
CACTACTCTGTGAATGGAAG+TGG - chr7_2:67793767-67793786 Msa1071320:intron 45.0%
TGGAAGTGGTTGTTGATGCT+TGG - chr7_2:67793781-67793800 Msa1071320:intron 45.0%
CGATCAATGGTAAACCCGAA+AGG - chr7_2:67793850-67793869 Msa1071320:intron 45.0%
ACACGATGATCTCACCTGAT+GGG + chr7_2:67793958-67793977 None:intergenic 45.0%
AACACGATGATCTCACCTGA+TGG + chr7_2:67793959-67793978 None:intergenic 45.0%
! TCATCGTGTTGTTGTTCCAC+TGG - chr7_2:67793969-67793988 Msa1071320:intron 45.0%
TCGAAGATGTGGTGAACAGA+CGG - chr7_2:67794064-67794083 Msa1071320:intron 45.0%
GTTGATCTTAGTCGACCGAA+TGG - chr7_2:67794108-67794127 Msa1071320:intron 45.0%
ACCCAACTAAACCTCCCATT+TGG - chr7_2:67794633-67794652 Msa1071320:intron 45.0%
CTCCAAATGGGAGGTTTAGT+TGG + chr7_2:67794638-67794657 None:intergenic 45.0%
GTAGTGGTGTCTGAAAGTAG+TGG - chr7_2:67794791-67794810 Msa1071320:intron 45.0%
ATATGCTGTAGAACCAACCG+AGG - chr7_2:67794878-67794897 Msa1071320:intron 45.0%
! AACCTTGGTTCGCTATGTTG+CGG + chr7_2:67794931-67794950 None:intergenic 45.0%
GCGAACCAAGGTTCAAATTC+TGG - chr7_2:67794938-67794957 Msa1071320:intron 45.0%
ACCAAGGTTCAAATTCTGGC+TGG - chr7_2:67794942-67794961 Msa1071320:intron 45.0%
! CCAAGGTTCAAATTCTGGCT+GGG - chr7_2:67794943-67794962 Msa1071320:intron 45.0%
!! TGCCCACTTTTGTGTGAAAC+CGG - chr7_2:67794971-67794990 Msa1071320:intron 45.0%
TCCCGGTTTCACACAAAAGT+GGG + chr7_2:67794976-67794995 None:intergenic 45.0%
TTCCCGGTTTCACACAAAAG+TGG + chr7_2:67794977-67794996 None:intergenic 45.0%
GGTAGGAGTCATATAACTCC+TGG - chr7_2:67795074-67795093 Msa1071320:intron 45.0%
ATTACCTAATGGTCAGCGCT+TGG + chr7_2:67795354-67795373 None:intergenic 45.0%
TGTTCTAACACTGGGAGTAG+TGG - chr7_2:67795554-67795573 Msa1071320:intron 45.0%
! TGGGAGTAGTGGAAGCATAT+AGG - chr7_2:67795565-67795584 Msa1071320:intron 45.0%
! GGGAGTAGTGGAAGCATATA+GGG - chr7_2:67795566-67795585 Msa1071320:intron 45.0%
! GGAGTAGTGGAAGCATATAG+GGG - chr7_2:67795567-67795586 Msa1071320:intron 45.0%
! CAAAGAAGAAGCTGGTGATG+AGG + chr7_2:67795673-67795692 None:intergenic 45.0%
TCCCGTATCAAAGAAGAAGC+TGG + chr7_2:67795681-67795700 None:intergenic 45.0%
AGCTTCTTCTTTGATACGGG+AGG - chr7_2:67795680-67795699 Msa1071320:intron 45.0%
CAAGTGTGTTAGAAAGCTGC+AGG - chr7_2:67795803-67795822 Msa1071320:intron 45.0%
TTCGTGCACTACGTAAATGG+GGG - chr7_2:67795867-67795886 Msa1071320:intron 45.0%
ACTAATGACGCCGTCTAACT+AGG - chr7_2:67796219-67796238 Msa1071320:CDS 45.0%
! CTACGTGAAGAGTGGCTTTA+AGG - chr7_2:67796399-67796418 Msa1071320:five_prime_UTR 45.0%
AACTTCGTTCTTGCACAGCT+TGG + chr7_2:67796434-67796453 None:intergenic 45.0%
AGCTGTGCAAGAACGAAGTT+AGG - chr7_2:67796434-67796453 Msa1071320:intron 45.0%
! ATGTGTGTGGCCTACAGTTT+TGG + chr7_2:67796703-67796722 None:intergenic 45.0%
CGAAGATGTGGTGAACAGAC+GGG - chr7_2:67794065-67794084 Msa1071320:intron 50.0%
ACAGACGGGATATTGTGTCG+TGG - chr7_2:67794079-67794098 Msa1071320:intron 50.0%
CAGACGGGATATTGTGTCGT+GGG - chr7_2:67794080-67794099 Msa1071320:intron 50.0%
AGACGGGATATTGTGTCGTG+GGG - chr7_2:67794081-67794100 Msa1071320:intron 50.0%
CTGTAGAACCAACCGAGGTT+GGG - chr7_2:67794883-67794902 Msa1071320:intron 50.0%
! ACCTTGGTTCGCTATGTTGC+GGG + chr7_2:67794930-67794949 None:intergenic 50.0%
CCCAGCCAGAATTTGAACCT+TGG + chr7_2:67794946-67794965 None:intergenic 50.0%
! GTTCAAATTCTGGCTGGGAG+TGG - chr7_2:67794948-67794967 Msa1071320:intron 50.0%
!! GCCCACTTTTGTGTGAAACC+GGG - chr7_2:67794972-67794991 Msa1071320:intron 50.0%
GCATATAGGGGCCTTGGAAT+AGG - chr7_2:67795579-67795598 Msa1071320:intron 50.0%
TCACGTGCAAGTAAACCGCT+CGG + chr7_2:67795737-67795756 None:intergenic 50.0%
TGCACTACGTAAATGGGGGA+CGG - chr7_2:67795871-67795890 Msa1071320:intron 50.0%
TGCACTTACAATGGCGAGCA+AGG + chr7_2:67795900-67795919 None:intergenic 50.0%
!! GAAGAGTGGCTTTAAGGCAG+TGG - chr7_2:67796405-67796424 Msa1071320:intron 50.0%
AACATGGCAGTCGAGTCTAC+TGG - chr7_2:67796529-67796548 Msa1071320:intron 50.0%
TAAGAATGGGAGCCAACCCA+TGG + chr7_2:67796763-67796782 None:intergenic 50.0%
GCTGTAGAACCAACCGAGGT+TGG - chr7_2:67794882-67794901 Msa1071320:intron 55.0%
TCCCGCAACATAGCGAACCA+AGG - chr7_2:67794926-67794945 Msa1071320:intron 55.0%
GCGCTTGGCACCAAAAGACT+AGG + chr7_2:67795339-67795358 None:intergenic 55.0%
! GTGGAAGCATATAGGGGCCT+TGG - chr7_2:67795573-67795592 Msa1071320:intron 55.0%
AAGCATTCCAACGTGCCGAG+CGG - chr7_2:67795719-67795738 Msa1071320:intron 55.0%
AAGTAAACCGCTCGGCACGT+TGG + chr7_2:67795729-67795748 None:intergenic 55.0%
CCAACCGAGGTTGGGTCTAG+CGG - chr7_2:67794891-67794910 Msa1071320:intron 60.0%
CGTTCCGCTAGACCCAACCT+CGG + chr7_2:67794898-67794917 None:intergenic 60.0%
CGAGGTTGGGTCTAGCGGAA+CGG - chr7_2:67794896-67794915 Msa1071320:intron 60.0%
GAGGTTGGGTCTAGCGGAAC+GGG - chr7_2:67794897-67794916 Msa1071320:intron 60.0%
!! GGTGCCAAGCGCTGACCATT+AGG - chr7_2:67795347-67795366 Msa1071320:intron 60.0%
CCGCTAGACCCAACCTCGGT+TGG + chr7_2:67794894-67794913 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67793268 67796878 67793268 ID=Msa1071320;Name=Msa1071320
chr7_2 mRNA 67793268 67796878 67793268 ID=Msa1071320-mRNA-1;Parent=Msa1071320;Name=Msa1071320-mRNA-1;_AED=0.23;_eAED=0.23;_QI=240|1|1|1|0.4|0.5|6|311|257
chr7_2 exon 67793268 67793771 67793268 ID=Msa1071320-mRNA-1:exon:14777;Parent=Msa1071320-mRNA-1
chr7_2 exon 67794236 67794464 67794236 ID=Msa1071320-mRNA-1:exon:14776;Parent=Msa1071320-mRNA-1
chr7_2 exon 67794546 67794645 67794546 ID=Msa1071320-mRNA-1:exon:14775;Parent=Msa1071320-mRNA-1
chr7_2 exon 67795955 67796099 67795955 ID=Msa1071320-mRNA-1:exon:14774;Parent=Msa1071320-mRNA-1
chr7_2 exon 67796184 67796419 67796184 ID=Msa1071320-mRNA-1:exon:14773;Parent=Msa1071320-mRNA-1
chr7_2 exon 67796768 67796878 67796768 ID=Msa1071320-mRNA-1:exon:14772;Parent=Msa1071320-mRNA-1
chr7_2 five_prime_UTR 67796768 67796878 67796768 ID=Msa1071320-mRNA-1:five_prime_utr;Parent=Msa1071320-mRNA-1
chr7_2 five_prime_UTR 67796291 67796419 67796291 ID=Msa1071320-mRNA-1:five_prime_utr;Parent=Msa1071320-mRNA-1
chr7_2 CDS 67796184 67796290 67796184 ID=Msa1071320-mRNA-1:cds;Parent=Msa1071320-mRNA-1
chr7_2 CDS 67795955 67796099 67795955 ID=Msa1071320-mRNA-1:cds;Parent=Msa1071320-mRNA-1
chr7_2 CDS 67794546 67794645 67794546 ID=Msa1071320-mRNA-1:cds;Parent=Msa1071320-mRNA-1
chr7_2 CDS 67794236 67794464 67794236 ID=Msa1071320-mRNA-1:cds;Parent=Msa1071320-mRNA-1
chr7_2 CDS 67793579 67793771 67793579 ID=Msa1071320-mRNA-1:cds;Parent=Msa1071320-mRNA-1
chr7_2 three_prime_UTR 67793268 67793578 67793268 ID=Msa1071320-mRNA-1:three_prime_utr;Parent=Msa1071320-mRNA-1
Gene Sequence

>Msa1071320

ATGGTAAACCCGAAAGGGTCTAGTCAATCAAAAATATGCTATCGGCCTATACGACCGTCTGATTTTGACGTTTTAGAGCGTATTCATGGTAGATTATTTCCCATCAGGTATGAATCTGCTTTTTTCGAAGATGTGGTGAACAGACGGGATATTGTGTCGTGGGGAGCAGTTGATCTTAGTCGACCGAATGGCCAAAGTGATGAACTTATTGGATTTGTAACAGCGCGGATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATTTGCTTGGATATGACTCAGCCAAATCTGACCAGACTTTAGTGTATGTTCTAACACTGGGAGTAGTGGAAGCATATAGGGGCCTTGGAATAGCTTCTTCTTTGATACGGGAGGTCGTAAAGTATGCTTCAAGCATTCCAACGTGCCGAGCGGTTTACTTGCACGTGATTTCTTTCAATATCTCAGCAATCAATTTATACAAGAAAATGTCTTTCAAGTGTGTTAGAAAGCTGCAGGGCTTTTATTTTATCAATGGCCAACACTATGATTCATTTTTATTCGTGCACTACGTAAATGGGGGACGGTCTCCTTGCTCGCCATTACAGCTTCTCTCTGCATTTGTAAGCTACGTGAAGAGTGGCTTTAAGGCAGTGGCTGCCAAGCTGTGCAAGAACGAAGTTAGGAAGATCTCAAGGTGGGAAAAGTGTAGAGAAAGCCATTCTCTTGTCTCACTCTCAACAATACCCAACAAAAGAAACATGGCAGTCGAGTCTACTGGTTGTGAGTTTGTGTAA

Protein sequence

>Msa1071320

MVNPKGSSQSKICYRPIRPSDFDVLERIHGRLFPIRYESAFFEDVVNRRDIVSWGAVDLSRPNGQSDELIGFVTARIVLAKESEIVDLLGYDSAKSDQTLVYVLTLGVVEAYRGLGIASSLIREVVKYASSIPTCRAVYLHVISFNISAINLYKKMSFKCVRKLQGFYFINGQHYDSFLFVHYVNGGRSPCSPLQLLSAFVSYVKSGFKAVAAKLCKNEVRKISRWEKCRESHSLVSLSTIPNKRNMAVESTGCEFV*