AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0882570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882570 MtrunA17_Chr6g0462171 94.000 250 14 1 1 250 1 249 7.01e-176 483
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0882570 AT2G35790.1 74.611 193 40 2 62 250 51 238 3.31e-99 289

Find 70 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTGAGATGCAGTAAAT+TGG 0.207652 6_1:-31988569 None:intergenic
TCCGAAAACTTGATAGTCTT+TGG 0.213516 6_1:-31988975 None:intergenic
TAGGCCTTATGTGACATTTA+AGG 0.237769 6_1:+31989019 Msa0882570:CDS
CATGATAGCATGAACCCTTT+AGG 0.276085 6_1:+31989252 Msa0882570:three_prime_UTR
TATGTGACATTTAAGGCTAA+TGG 0.315354 6_1:+31989026 Msa0882570:CDS
TCTTCCTTATCATCTCCTTC+AGG 0.337341 6_1:+31984353 Msa0882570:CDS
TGTGTAGATGTGGTTGGATT+TGG 0.338414 6_1:+31989194 Msa0882570:three_prime_UTR
ATTGTTGGATTAGTAGTAAC+CGG 0.363216 6_1:-31988504 None:intergenic
GGAAGAAGATAAACGGTTGC+GGG 0.377714 6_1:-31984336 None:intergenic
CACAGAACACTGTCACAATA+AGG 0.380606 6_1:+31989067 Msa0882570:CDS
CTTTATTAATAAAACCTAAA+GGG 0.383102 6_1:-31989266 None:intergenic
AACCTCGAAGCTGTCTGAAC+CGG 0.384867 6_1:-31988922 None:intergenic
CCGAAAACTTGATAGTCTTT+GGG 0.391669 6_1:-31988974 None:intergenic
AAATGTCACATAAGGCCTAT+TGG 0.427501 6_1:-31989015 None:intergenic
CATTTGAGATGCAGTAAATT+GGG 0.432664 6_1:-31988568 None:intergenic
TTGCTCCACGGTTTGATTGT+TGG 0.434895 6_1:-31988519 None:intergenic
CTACAACCGCTATCCTTCAC+TGG 0.443154 6_1:+31988862 Msa0882570:CDS
GGAACCTGAAGGAGATGATA+AGG 0.455065 6_1:-31984357 None:intergenic
TGGGAAGACGGCTTATATGC+TGG 0.462964 6_1:-31988549 None:intergenic
CTCGGATTGTTGTACTCCAC+TGG 0.467172 6_1:-31988646 None:intergenic
AACGGTTGCGGGTTTGTGAT+CGG 0.471201 6_1:-31984325 None:intergenic
ACTTTATTAATAAAACCTAA+AGG 0.475196 6_1:-31989267 None:intergenic
TTCGTCCAGCTGACACCAAT+AGG 0.484168 6_1:+31989000 Msa0882570:CDS
TGCTAGACTCACCCCACAAA+AGG 0.485125 6_1:+31989097 Msa0882570:CDS
TGCTGTCTCTCGGTATCTCT+CGG 0.488625 6_1:+31988753 Msa0882570:CDS
TTAGCCTTAAATGTCACATA+AGG 0.497722 6_1:-31989023 None:intergenic
CAAATGAGATGGGCATCAAA+AGG 0.505343 6_1:+31988585 Msa0882570:CDS
ATGATAAGGAAGAAGATAAA+CGG 0.506648 6_1:-31984343 None:intergenic
TCTCTCAACTTGCTGTCTCT+CGG 0.519620 6_1:+31988743 Msa0882570:CDS
TTGAGGATGACATTACTGTC+AGG 0.523823 6_1:-31988801 None:intergenic
TAGCCATGTGTAGATGTGGT+TGG 0.527367 6_1:+31989188 Msa0882570:three_prime_UTR
ACCTCGAAGCTGTCTGAACC+GGG 0.531929 6_1:-31988921 None:intergenic
TAAGGCCTATTGGTGTCAGC+TGG 0.540333 6_1:-31989005 None:intergenic
CATCTGAGTTTGTGAACATA+CGG 0.543670 6_1:-31988894 None:intergenic
GAGGAAGACAAGATCAGCAT+TGG 0.551218 6_1:+31988618 Msa0882570:CDS
CGTATGTTCACAAACTCAGA+TGG 0.554386 6_1:+31988895 Msa0882570:CDS
TTACTGCATCTCAAATGAGA+TGG 0.555286 6_1:+31988574 Msa0882570:CDS
TACTGCATCTCAAATGAGAT+GGG 0.557710 6_1:+31988575 Msa0882570:CDS
CACAAACTCAGATGGGAACC+CGG 0.557988 6_1:+31988903 Msa0882570:CDS
GGTTGAGATGTTGTCATGGT+TGG 0.558066 6_1:+31988941 Msa0882570:CDS
ACTGTCAGGGGATGTCATGA+AGG 0.563633 6_1:-31988787 None:intergenic
GCTGGATTTGCATTGCTCCA+CGG 0.566497 6_1:-31988531 None:intergenic
TGACAGTAATGTCATCCTCA+AGG 0.568316 6_1:+31988803 Msa0882570:CDS
AGGAAGAAGATAAACGGTTG+CGG 0.582963 6_1:-31984337 None:intergenic
GATTGTTGTACTCCACTGGC+AGG 0.587858 6_1:-31988642 None:intergenic
AACCGGGCGTCCGGATGTGG+AGG 0.589758 6_1:-31988487 None:intergenic
GATGCAGTAAATTGGGAAGA+CGG 0.595617 6_1:-31988561 None:intergenic
TCTCTCGGTATCTCTCGGTC+CGG 0.596437 6_1:+31988758 Msa0882570:CDS
TTGTTGGATTAGTAGTAACC+GGG 0.597339 6_1:-31988503 None:intergenic
TGAGGATGACATTACTGTCA+GGG 0.598643 6_1:-31988800 None:intergenic
ATCAGCATTGGACCTGCCAG+TGG 0.600861 6_1:+31988630 Msa0882570:CDS
ATGTGGAGGACCTAAAACAC+TGG 0.602768 6_1:-31988473 None:intergenic
TGTCATCCTCAAGGGTGCAG+TGG 0.606987 6_1:+31988812 Msa0882570:CDS
GATGTCATGAAGGTTATGAC+CGG 0.607668 6_1:-31988777 None:intergenic
GACAGTAATGTCATCCTCAA+GGG 0.610533 6_1:+31988804 Msa0882570:CDS
GGAGTACAACAATCCGAGGA+AGG 0.613550 6_1:+31988651 Msa0882570:CDS
GCTTTAGCCATGTGTAGATG+TGG 0.616430 6_1:+31989184 Msa0882570:three_prime_UTR
ATAATTATTGAAGTTTACTG+TGG 0.617031 6_1:+31989375 Msa0882570:three_prime_UTR
TCGAGGTTGAGATGTTGTCA+TGG 0.619215 6_1:+31988937 Msa0882570:CDS
ACGGACTGACAAACCAGTGA+AGG 0.626755 6_1:-31988875 None:intergenic
ATCAAAAGGCACAACAACAG+AGG 0.634648 6_1:+31988599 Msa0882570:CDS
GACACCGCAGTTTACTACTA+CGG 0.636046 6_1:+31988681 Msa0882570:CDS
CAGTGGAGTACAACAATCCG+AGG 0.659205 6_1:+31988647 Msa0882570:CDS
GTATGTTCACAAACTCAGAT+GGG 0.660379 6_1:+31988896 Msa0882570:CDS
ATGATGCCACTGCACCCTTG+AGG 0.666549 6_1:-31988818 None:intergenic
GACAAACCAGTGAAGGATAG+CGG 0.672441 6_1:-31988868 None:intergenic
GAGGATGACATTACTGTCAG+GGG 0.692973 6_1:-31988799 None:intergenic
AATCCAACCACATCTACACA+TGG 0.696717 6_1:-31989191 None:intergenic
CTAATCCAACAATCAAACCG+TGG 0.712375 6_1:+31988514 Msa0882570:CDS
TGGACCGTAGTAGTAAACTG+CGG 0.798271 6_1:-31988685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAGTTAATTCAAAA+CGG - chr6_1:31984732-31984751 None:intergenic 10.0%
!!! AATAAACTGACTTTTTTTTT+AGG + chr6_1:31984953-31984972 Msa0882570:intron 15.0%
!!! AAATATCAAAAATGATTTTC+TGG + chr6_1:31985450-31985469 Msa0882570:intron 15.0%
!!! TAAACTTTTAAATTTGACAT+TGG + chr6_1:31985644-31985663 Msa0882570:intron 15.0%
!! TTATCCTAAACTAAATTTAA+GGG + chr6_1:31986897-31986916 Msa0882570:intron 15.0%
!!! CATTAAATTTTTAATTGATG+AGG - chr6_1:31987077-31987096 None:intergenic 15.0%
!! ATTAAAAATTTAATGACAAG+TGG + chr6_1:31987082-31987101 Msa0882570:intron 15.0%
!!! ATACAAATTTTAAAGCAAAA+GGG - chr6_1:31987722-31987741 None:intergenic 15.0%
!!! AATACAAATTTTAAAGCAAA+AGG - chr6_1:31987723-31987742 None:intergenic 15.0%
!! CATCAAAATAAAAACATTAA+TGG - chr6_1:31988429-31988448 None:intergenic 15.0%
!!! TAGAAGTTTTACTTTTTTTA+TGG - chr6_1:31988721-31988740 None:intergenic 15.0%
!! CTTTATTAATAAAACCTAAA+GGG - chr6_1:31989269-31989288 None:intergenic 15.0%
!! ACTTTATTAATAAAACCTAA+AGG - chr6_1:31989270-31989289 None:intergenic 15.0%
!!! ATTTTTTGTAACTTCAATTA+TGG + chr6_1:31989296-31989315 Msa0882570:three_prime_UTR 15.0%
!!! TTTTTTGTAACTTCAATTAT+GGG + chr6_1:31989297-31989316 Msa0882570:three_prime_UTR 15.0%
!! AATGTAAAATGGTTTATGTT+TGG + chr6_1:31984983-31985002 Msa0882570:intron 20.0%
!!! TGATTTTGCAAAATTGATTA+TGG + chr6_1:31985044-31985063 Msa0882570:intron 20.0%
!! AAATTATAAAATGAACTCGA+TGG - chr6_1:31985331-31985350 None:intergenic 20.0%
!!! TCGAGTTCATTTTATAATTT+AGG + chr6_1:31985331-31985350 Msa0882570:intron 20.0%
!!! CGAGTTCATTTTATAATTTA+GGG + chr6_1:31985332-31985351 Msa0882570:intron 20.0%
!! TTAAATTTGACATTGGAATA+TGG + chr6_1:31985651-31985670 Msa0882570:intron 20.0%
!! TAAATTTGACATTGGAATAT+GGG + chr6_1:31985652-31985671 Msa0882570:intron 20.0%
!!! TTAGGATAACACTATTTTTA+TGG - chr6_1:31986886-31986905 None:intergenic 20.0%
!! GTTATCCTAAACTAAATTTA+AGG + chr6_1:31986896-31986915 Msa0882570:intron 20.0%
!! TTATTTACAAAACATCACAA+TGG - chr6_1:31987413-31987432 None:intergenic 20.0%
!!! GTTAAAGTTACTTTTTGAAA+CGG + chr6_1:31987630-31987649 Msa0882570:intron 20.0%
!!! TTTTTATTGTGATAAGAAAC+AGG - chr6_1:31987697-31987716 None:intergenic 20.0%
!! GGGATAAATAAATTAGAAAT+GGG - chr6_1:31987763-31987782 None:intergenic 20.0%
!! TGGGATAAATAAATTAGAAA+TGG - chr6_1:31987764-31987783 None:intergenic 20.0%
!! ACAGAAATTAAAACCAATTA+GGG - chr6_1:31987818-31987837 None:intergenic 20.0%
!! TACAGAAATTAAAACCAATT+AGG - chr6_1:31987819-31987838 None:intergenic 20.0%
!!! AATCTGAAGTTAAAAAATGT+TGG + chr6_1:31988074-31988093 Msa0882570:intron 20.0%
!!! TAATGGAAATTTCTATTTTG+TGG + chr6_1:31989043-31989062 Msa0882570:CDS 20.0%
!!! TTTTTGTAACTTCAATTATG+GGG + chr6_1:31989298-31989317 Msa0882570:three_prime_UTR 20.0%
!!! GAAATCACTAATAATTTTGA+AGG - chr6_1:31989335-31989354 None:intergenic 20.0%
!! ATAATTATTGAAGTTTACTG+TGG + chr6_1:31989375-31989394 Msa0882570:three_prime_UTR 20.0%
! ATGATAAGGAAGAAGATAAA+CGG - chr6_1:31984346-31984365 None:intergenic 25.0%
!!! ACTAGGGTTTATTGTTTTTT+AGG + chr6_1:31984412-31984431 Msa0882570:intron 25.0%
!!! CTAGGGTTTATTGTTTTTTA+GGG + chr6_1:31984413-31984432 Msa0882570:intron 25.0%
!!! CTAGTCATAAGTTTTTTTTG+AGG - chr6_1:31984872-31984891 None:intergenic 25.0%
!!! AAACTGACTTTTTTTTTAGG+TGG + chr6_1:31984956-31984975 Msa0882570:intron 25.0%
!!! AACTGACTTTTTTTTTAGGT+GGG + chr6_1:31984957-31984976 Msa0882570:intron 25.0%
! AAATTGATTATGGCTAAAAG+TGG + chr6_1:31985054-31985073 Msa0882570:intron 25.0%
! AATTGATTATGGCTAAAAGT+GGG + chr6_1:31985055-31985074 Msa0882570:intron 25.0%
!!! TAGTATTCAAGTCACTTTTA+CGG - chr6_1:31985115-31985134 None:intergenic 25.0%
!!! AAGTTAGAATCAGTTCTAAA+TGG + chr6_1:31985187-31985206 Msa0882570:intron 25.0%
!!! AGTTAGAATCAGTTCTAAAT+GGG + chr6_1:31985188-31985207 Msa0882570:intron 25.0%
!!! AAATGGGTTATAGTATTAGT+TGG + chr6_1:31985204-31985223 Msa0882570:intron 25.0%
! AATTAAAACCCAACAACAAT+AGG + chr6_1:31985613-31985632 Msa0882570:intron 25.0%
! TTTCATCAAGATAATTGACA+TGG - chr6_1:31985715-31985734 None:intergenic 25.0%
!! TGAACTTCTAAATTTGACTT+TGG + chr6_1:31986137-31986156 Msa0882570:intron 25.0%
! GTACAAAATATTGTGAAAAG+CGG - chr6_1:31986805-31986824 None:intergenic 25.0%
!! TCTTCCCTTAAATTTAGTTT+AGG - chr6_1:31986904-31986923 None:intergenic 25.0%
!! TTAACAGTGTTGAAAAATCA+GGG - chr6_1:31986987-31987006 None:intergenic 25.0%
!! TTTAACAGTGTTGAAAAATC+AGG - chr6_1:31986988-31987007 None:intergenic 25.0%
! AGTAAACAAAAATCCAAAGA+TGG - chr6_1:31987139-31987158 None:intergenic 25.0%
!!! GACTAGATTTTAGTAACAAA+GGG - chr6_1:31987172-31987191 None:intergenic 25.0%
!!! AGACTAGATTTTAGTAACAA+AGG - chr6_1:31987173-31987192 None:intergenic 25.0%
! AAAACTACTTCACAACAATA+AGG - chr6_1:31987484-31987503 None:intergenic 25.0%
!! CATCTTAATTTGAAGTTATG+TGG - chr6_1:31988008-31988027 None:intergenic 25.0%
!! CTTCAGATTGTAGATTTTAT+AGG - chr6_1:31988063-31988082 None:intergenic 25.0%
!!! TTTTTTATGGTACTTGAGAT+TGG - chr6_1:31988708-31988727 None:intergenic 25.0%
TCTACAGAACTATCTTACTA+GGG + chr6_1:31984396-31984415 Msa0882570:intron 30.0%
TTTGTGAATTTGTGTCTGTT+TGG + chr6_1:31984615-31984634 Msa0882570:intron 30.0%
GTTTATTCAACATCAACGTT+TGG - chr6_1:31984940-31984959 None:intergenic 30.0%
TGGATACATTTACGTATGTT+TGG + chr6_1:31985003-31985022 Msa0882570:intron 30.0%
!!! AGTATTCAAGTCACTTTTAC+GGG - chr6_1:31985114-31985133 None:intergenic 30.0%
!! ATGTTTAGTTCCACTTTTGA+AGG - chr6_1:31985283-31985302 None:intergenic 30.0%
AAAGTGGAACTAAACATACA+TGG + chr6_1:31985286-31985305 Msa0882570:intron 30.0%
!! AAATGAGAAGTTGTTTCTAG+TGG - chr6_1:31985481-31985500 None:intergenic 30.0%
! TTTAAGAGCCTATTGTTGTT+GGG - chr6_1:31985624-31985643 None:intergenic 30.0%
ATTTAAGAGCCTATTGTTGT+TGG - chr6_1:31985625-31985644 None:intergenic 30.0%
! TTTTGTCAAATAGTGGCTTT+AGG + chr6_1:31985758-31985777 Msa0882570:intron 30.0%
! TTTGTCAAATAGTGGCTTTA+GGG + chr6_1:31985759-31985778 Msa0882570:intron 30.0%
CATATAAGCTCTTATGCATA+AGG - chr6_1:31985989-31986008 None:intergenic 30.0%
TTAAGCTGTTTACACAAACA+AGG + chr6_1:31986036-31986055 Msa0882570:intron 30.0%
! CTAAATTTGACTTTGGACTA+TGG + chr6_1:31986144-31986163 Msa0882570:intron 30.0%
! TAGCGGCTATAACTTTTATA+AGG + chr6_1:31986367-31986386 Msa0882570:intron 30.0%
! ATTTTTCTCCCTCCAATTTA+TGG + chr6_1:31986483-31986502 Msa0882570:intron 30.0%
! GTGTTGTTAATCACATATTG+CGG + chr6_1:31986528-31986547 Msa0882570:intron 30.0%
ATACTATCAGTGTTCTCATA+TGG + chr6_1:31986595-31986614 Msa0882570:intron 30.0%
! TAACAGTGTTGAAAAATCAG+GGG - chr6_1:31986986-31987005 None:intergenic 30.0%
ACAAAAATCCAAAGATGGAA+GGG - chr6_1:31987134-31987153 None:intergenic 30.0%
AACAAAAATCCAAAGATGGA+AGG - chr6_1:31987135-31987154 None:intergenic 30.0%
!! CTCTTCTAAAATGTCCATTA+TGG + chr6_1:31987196-31987215 Msa0882570:intron 30.0%
AGAATTTCTACCTCTTTAGT+TGG + chr6_1:31987229-31987248 Msa0882570:intron 30.0%
TCAACTAAGTAAAGCACAAA+GGG - chr6_1:31987294-31987313 None:intergenic 30.0%
ATCAACTAAGTAAAGCACAA+AGG - chr6_1:31987295-31987314 None:intergenic 30.0%
ATAAAGTTGAAAACGAGAAC+TGG + chr6_1:31987429-31987448 Msa0882570:intron 30.0%
AAGCTGTTTAACACCAATTA+TGG + chr6_1:31987577-31987596 Msa0882570:intron 30.0%
CTTTCTTAAGATTCTGTCAA+TGG - chr6_1:31987666-31987685 None:intergenic 30.0%
ACTTGAATCACAGAATGTTA+TGG + chr6_1:31987844-31987863 Msa0882570:intron 30.0%
!! TTTGATTTGCTTCTAACACA+TGG + chr6_1:31987896-31987915 Msa0882570:intron 30.0%
ACACATGGTTCATAATGTTT+CGG + chr6_1:31987911-31987930 Msa0882570:intron 30.0%
GTTGAGAGACTATTAGAATT+TGG - chr6_1:31987943-31987962 None:intergenic 30.0%
!!! CACTCATGTACTGTTTTTAA+TGG + chr6_1:31988124-31988143 Msa0882570:intron 30.0%
! GTTTTTAATGGTTACTCTTG+AGG + chr6_1:31988136-31988155 Msa0882570:intron 30.0%
GGTCTATATAAATTCAGTTC+AGG - chr6_1:31988316-31988335 None:intergenic 30.0%
!! GAATGTTGTTTCTGAAATGA+CGG + chr6_1:31988344-31988363 Msa0882570:intron 30.0%
!! ATTGTTGGATTAGTAGTAAC+CGG - chr6_1:31988507-31988526 None:intergenic 30.0%
! CATTTGAGATGCAGTAAATT+GGG - chr6_1:31988571-31988590 None:intergenic 30.0%
! TCATTTGAGATGCAGTAAAT+TGG - chr6_1:31988572-31988591 None:intergenic 30.0%
!! TTAGCCTTAAATGTCACATA+AGG - chr6_1:31989026-31989045 None:intergenic 30.0%
! TATGTGACATTTAAGGCTAA+TGG + chr6_1:31989026-31989045 Msa0882570:CDS 30.0%
! AATCATGAGTTTCCTTTTGT+GGG - chr6_1:31989112-31989131 None:intergenic 30.0%
CTCTACAGAACTATCTTACT+AGG + chr6_1:31984395-31984414 Msa0882570:intron 35.0%
GAATTTGTGTCTGTTTGGAT+TGG + chr6_1:31984620-31984639 Msa0882570:intron 35.0%
!! TTTGGATTGGTTGTTTGAGT+TGG + chr6_1:31984633-31984652 Msa0882570:intron 35.0%
TACTAGTCATAAGCTTGTCA+AGG - chr6_1:31984845-31984864 None:intergenic 35.0%
TTCAACATCAACGTTTGGAT+TGG - chr6_1:31984935-31984954 None:intergenic 35.0%
!! TAGGTGGGTTGAATGTAAAA+TGG + chr6_1:31984972-31984991 Msa0882570:intron 35.0%
! ACTGATTCTAACTTAGAGCT+AGG - chr6_1:31985181-31985200 None:intergenic 35.0%
TTTGACATTGGAATATGGGA+AGG + chr6_1:31985656-31985675 Msa0882570:intron 35.0%
ATTGGAATATGGGAAGGAAA+TGG + chr6_1:31985662-31985681 Msa0882570:intron 35.0%
TTGACAAAACTGGTCATTTC+TGG - chr6_1:31985747-31985766 None:intergenic 35.0%
!! TGACCAGTTTTGTCAAATAG+TGG + chr6_1:31985751-31985770 Msa0882570:intron 35.0%
AAGCCACTATTTGACAAAAC+TGG - chr6_1:31985757-31985776 None:intergenic 35.0%
TAAGTACTTGTGAGACTGTT+TGG + chr6_1:31985821-31985840 Msa0882570:intron 35.0%
AAGTACTTGTGAGACTGTTT+GGG + chr6_1:31985822-31985841 Msa0882570:intron 35.0%
GCTCAGTACGTAGAAAATAA+AGG - chr6_1:31986062-31986081 None:intergenic 35.0%
TTTGGACTATGGTGAGAAAA+TGG + chr6_1:31986155-31986174 Msa0882570:intron 35.0%
AAAGTAGTGTTGTCGAATAG+TGG + chr6_1:31986241-31986260 Msa0882570:intron 35.0%
TACTTTGCGATATATCTCCA+TGG + chr6_1:31986302-31986321 Msa0882570:intron 35.0%
TAGCCGCTATTTAACAACAT+CGG - chr6_1:31986356-31986375 None:intergenic 35.0%
!!! GTGGAAGTATTTTTTCCCAA+TGG - chr6_1:31986433-31986452 None:intergenic 35.0%
GACAACAAGAAAAGTTAAGG+TGG - chr6_1:31986452-31986471 None:intergenic 35.0%
GTGGACAACAAGAAAAGTTA+AGG - chr6_1:31986455-31986474 None:intergenic 35.0%
!! TAACTTTTCTTGTTGTCCAC+AGG + chr6_1:31986455-31986474 Msa0882570:intron 35.0%
TGATGGGAAATGCCATAAAT+TGG - chr6_1:31986498-31986517 None:intergenic 35.0%
CAACACTGTATAGAAGTGAT+GGG - chr6_1:31986514-31986533 None:intergenic 35.0%
ACAACACTGTATAGAAGTGA+TGG - chr6_1:31986515-31986534 None:intergenic 35.0%
GAGAACACTGATAGTATCTA+TGG - chr6_1:31986592-31986611 None:intergenic 35.0%
! GAACAAATTGCTATTGTTCC+TGG - chr6_1:31986842-31986861 None:intergenic 35.0%
AAAAATCAGGGGGAAAAATG+GGG - chr6_1:31986975-31986994 None:intergenic 35.0%
GAAAAATCAGGGGGAAAAAT+GGG - chr6_1:31986976-31986995 None:intergenic 35.0%
TGAAAAATCAGGGGGAAAAA+TGG - chr6_1:31986977-31986996 None:intergenic 35.0%
! AACAGTGTTGAAAAATCAGG+GGG - chr6_1:31986985-31987004 None:intergenic 35.0%
!!! ACTTGATCAGTTTTGAGAGT+AGG + chr6_1:31987007-31987026 Msa0882570:intron 35.0%
! TTCTGAGTTTTTCGCCATAA+TGG - chr6_1:31987213-31987232 None:intergenic 35.0%
AGAACATGATAATCAGTAGG+AGG - chr6_1:31987258-31987277 None:intergenic 35.0%
GACAGAACATGATAATCAGT+AGG - chr6_1:31987261-31987280 None:intergenic 35.0%
! GCTTTACTTAGTTGATACGA+TGG + chr6_1:31987299-31987318 Msa0882570:intron 35.0%
! ATGGTAATGTCTTGATTCAG+AGG + chr6_1:31987318-31987337 Msa0882570:intron 35.0%
CACAACAATAAGGTTCAGTT+TGG - chr6_1:31987474-31987493 None:intergenic 35.0%
CATCAAGAAGAGTCCATAAT+TGG - chr6_1:31987593-31987612 None:intergenic 35.0%
TGTTAGAAGCAAATCAAACC+AGG - chr6_1:31987894-31987913 None:intergenic 35.0%
AGAAACAACATTCGAAACAG+AGG - chr6_1:31988337-31988356 None:intergenic 35.0%
TGAAATGACGGTGATTAGAA+TGG + chr6_1:31988356-31988375 Msa0882570:intron 35.0%
!! TTGTTGGATTAGTAGTAACC+GGG - chr6_1:31988506-31988525 None:intergenic 35.0%
TTACTGCATCTCAAATGAGA+TGG + chr6_1:31988574-31988593 Msa0882570:CDS 35.0%
TACTGCATCTCAAATGAGAT+GGG + chr6_1:31988575-31988594 Msa0882570:CDS 35.0%
CATCTGAGTTTGTGAACATA+CGG - chr6_1:31988897-31988916 None:intergenic 35.0%
GTATGTTCACAAACTCAGAT+GGG + chr6_1:31988896-31988915 Msa0882570:CDS 35.0%
! CCGAAAACTTGATAGTCTTT+GGG - chr6_1:31988977-31988996 None:intergenic 35.0%
! CCCAAAGACTATCAAGTTTT+CGG + chr6_1:31988974-31988993 Msa0882570:CDS 35.0%
! TCCGAAAACTTGATAGTCTT+TGG - chr6_1:31988978-31988997 None:intergenic 35.0%
AAATGTCACATAAGGCCTAT+TGG - chr6_1:31989018-31989037 None:intergenic 35.0%
! TAGGCCTTATGTGACATTTA+AGG + chr6_1:31989019-31989038 Msa0882570:CDS 35.0%
! ATCATGAGTTTCCTTTTGTG+GGG - chr6_1:31989111-31989130 None:intergenic 35.0%
! GAATCATGAGTTTCCTTTTG+TGG - chr6_1:31989113-31989132 None:intergenic 35.0%
AGGAAGAAGATAAACGGTTG+CGG - chr6_1:31984340-31984359 None:intergenic 40.0%
TCTTCCTTATCATCTCCTTC+AGG + chr6_1:31984353-31984372 Msa0882570:CDS 40.0%
AGTTCTGTCTCCTTCAAAAG+TGG + chr6_1:31985270-31985289 Msa0882570:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG + chr6_1:31985833-31985852 Msa0882570:intron 40.0%
CAGCCGATGTTGTTAAATAG+CGG + chr6_1:31986350-31986369 Msa0882570:intron 40.0%
!!! AGTATTTTTTCCCAATGGCC+CGG - chr6_1:31986428-31986447 None:intergenic 40.0%
GGGAAATGCCATAAATTGGA+GGG - chr6_1:31986494-31986513 None:intergenic 40.0%
TGGGAAATGCCATAAATTGG+AGG - chr6_1:31986495-31986514 None:intergenic 40.0%
CTATCAGTGTTCTCATATGG+CGG + chr6_1:31986598-31986617 Msa0882570:intron 40.0%
GTACAAAATAGCATATCGCC+AGG + chr6_1:31986821-31986840 Msa0882570:intron 40.0%
! TTTAAAAGCCCACCGTTTTG+GGG - chr6_1:31986933-31986952 None:intergenic 40.0%
!! CTTTAAAAGCCCACCGTTTT+GGG - chr6_1:31986934-31986953 None:intergenic 40.0%
!! TCTTTAAAAGCCCACCGTTT+TGG - chr6_1:31986935-31986954 None:intergenic 40.0%
!!! TGATCAGTTTTGAGAGTAGG+TGG + chr6_1:31987010-31987029 Msa0882570:intron 40.0%
TTTGAGAGTAGGTGGACAAA+CGG + chr6_1:31987018-31987037 Msa0882570:intron 40.0%
AACGGTTAGACAGATTGTGA+AGG + chr6_1:31987036-31987055 Msa0882570:intron 40.0%
CTTCGGATCATTGAAGAACT+GGG - chr6_1:31987783-31987802 None:intergenic 40.0%
TCTTCGGATCATTGAAGAAC+TGG - chr6_1:31987784-31987803 None:intergenic 40.0%
AGTTCTTCAATGATCCGAAG+AGG + chr6_1:31987783-31987802 Msa0882570:intron 40.0%
GCAATACACGAAGAAGACAA+TGG - chr6_1:31988215-31988234 None:intergenic 40.0%
! GTTCAGTGTACCAGTGTTTT+AGG + chr6_1:31988463-31988482 Msa0882570:intron 40.0%
CTAATCCAACAATCAAACCG+TGG + chr6_1:31988514-31988533 Msa0882570:CDS 40.0%
GATGCAGTAAATTGGGAAGA+CGG - chr6_1:31988564-31988583 None:intergenic 40.0%
CAAATGAGATGGGCATCAAA+AGG + chr6_1:31988585-31988604 Msa0882570:CDS 40.0%
! ATCAAAAGGCACAACAACAG+AGG + chr6_1:31988599-31988618 Msa0882570:CDS 40.0%
ACAATCCGAGGAAGGAAAAA+AGG + chr6_1:31988659-31988678 Msa0882570:CDS 40.0%
GATGTCATGAAGGTTATGAC+CGG - chr6_1:31988780-31988799 None:intergenic 40.0%
TGAGGATGACATTACTGTCA+GGG - chr6_1:31988803-31988822 None:intergenic 40.0%
TTGAGGATGACATTACTGTC+AGG - chr6_1:31988804-31988823 None:intergenic 40.0%
TGACAGTAATGTCATCCTCA+AGG + chr6_1:31988803-31988822 Msa0882570:CDS 40.0%
GACAGTAATGTCATCCTCAA+GGG + chr6_1:31988804-31988823 Msa0882570:CDS 40.0%
CGTATGTTCACAAACTCAGA+TGG + chr6_1:31988895-31988914 Msa0882570:CDS 40.0%
CACAGAACACTGTCACAATA+AGG + chr6_1:31989067-31989086 Msa0882570:CDS 40.0%
AATCCAACCACATCTACACA+TGG - chr6_1:31989194-31989213 None:intergenic 40.0%
TGTGTAGATGTGGTTGGATT+TGG + chr6_1:31989194-31989213 Msa0882570:three_prime_UTR 40.0%
CATGATAGCATGAACCCTTT+AGG + chr6_1:31989252-31989271 Msa0882570:three_prime_UTR 40.0%
GGAAGAAGATAAACGGTTGC+GGG - chr6_1:31984339-31984358 None:intergenic 45.0%
GGAACCTGAAGGAGATGATA+AGG - chr6_1:31984360-31984379 None:intergenic 45.0%
AGAGTGAGATTGGAACCTGA+AGG - chr6_1:31984371-31984390 None:intergenic 45.0%
GTAGAGAGAGAGAGTGAGAT+TGG - chr6_1:31984381-31984400 None:intergenic 45.0%
!! TAGTGGCTTTAGGGCATGTT+TGG + chr6_1:31985768-31985787 Msa0882570:intron 45.0%
CATATTTCCAGCAGTTCTCC+AGG + chr6_1:31985891-31985910 Msa0882570:intron 45.0%
GCAGTTGTCATAAGCTATCC+TGG - chr6_1:31985912-31985931 None:intergenic 45.0%
CTACGTACTGAGCTAAAGCA+AGG + chr6_1:31986069-31986088 Msa0882570:intron 45.0%
ATAGTGGTTATAGCGCGTAG+CGG + chr6_1:31986257-31986276 Msa0882570:intron 45.0%
CAACAGTCTGCACTAAACCA+TGG - chr6_1:31986322-31986341 None:intergenic 45.0%
AGTTGCAATTACAGCCTTGC+CGG + chr6_1:31986406-31986425 Msa0882570:intron 45.0%
!! CTTTTCTTGTTGTCCACAGG+AGG + chr6_1:31986458-31986477 Msa0882570:intron 45.0%
GGGAGAAAAATATCCTCCTG+TGG - chr6_1:31986474-31986493 None:intergenic 45.0%
CAAATTCCGCTATGCTATGG+CGG - chr6_1:31986640-31986659 None:intergenic 45.0%
CTCCAAATTCCGCTATGCTA+TGG - chr6_1:31986643-31986662 None:intergenic 45.0%
!! GCGGTGCTATTGTGAAAAAG+CGG - chr6_1:31986786-31986805 None:intergenic 45.0%
ATCCAAAGATGGAAGGGTCA+TGG - chr6_1:31987128-31987147 None:intergenic 45.0%
!! TAGGAGGCATCCAACTAAAG+AGG - chr6_1:31987242-31987261 None:intergenic 45.0%
TAGGGAGATGAACACCTCTT+CGG - chr6_1:31987800-31987819 None:intergenic 45.0%
! GAGGTGTTCATCTCCCTAAT+TGG + chr6_1:31987802-31987821 Msa0882570:intron 45.0%
GTAAAGTGAATCACGAGTCC+TGG + chr6_1:31987873-31987892 Msa0882570:intron 45.0%
ATGTGGAGGACCTAAAACAC+TGG - chr6_1:31988476-31988495 None:intergenic 45.0%
!! TGTTTTAGGTCCTCCACATC+CGG + chr6_1:31988477-31988496 Msa0882570:CDS 45.0%
TTGCTCCACGGTTTGATTGT+TGG - chr6_1:31988522-31988541 None:intergenic 45.0%
GAGGAAGACAAGATCAGCAT+TGG + chr6_1:31988618-31988637 Msa0882570:CDS 45.0%
!!! GGTGTCCTTTTTTCCTTCCT+CGG - chr6_1:31988667-31988686 None:intergenic 45.0%
GACACCGCAGTTTACTACTA+CGG + chr6_1:31988681-31988700 Msa0882570:CDS 45.0%
TGGACCGTAGTAGTAAACTG+CGG - chr6_1:31988688-31988707 None:intergenic 45.0%
!! TCTCTCAACTTGCTGTCTCT+CGG + chr6_1:31988743-31988762 Msa0882570:CDS 45.0%
GAGGATGACATTACTGTCAG+GGG - chr6_1:31988802-31988821 None:intergenic 45.0%
GACAAACCAGTGAAGGATAG+CGG - chr6_1:31988871-31988890 None:intergenic 45.0%
TCGAGGTTGAGATGTTGTCA+TGG + chr6_1:31988937-31988956 Msa0882570:CDS 45.0%
GGTTGAGATGTTGTCATGGT+TGG + chr6_1:31988941-31988960 Msa0882570:CDS 45.0%
GCTTTAGCCATGTGTAGATG+TGG + chr6_1:31989184-31989203 Msa0882570:three_prime_UTR 45.0%
TAGCCATGTGTAGATGTGGT+TGG + chr6_1:31989188-31989207 Msa0882570:three_prime_UTR 45.0%
!! TAAAAATAAAGTAAAATTAA+CGG - chr6_1:31988397-31988416 None:intergenic 5.0%
AACGGTTGCGGGTTTGTGAT+CGG - chr6_1:31984328-31984347 None:intergenic 50.0%
AAGCTATCCTGGAGAACTGC+TGG - chr6_1:31985901-31985920 None:intergenic 50.0%
GTTGCAATTACAGCCTTGCC+GGG + chr6_1:31986407-31986426 Msa0882570:intron 50.0%
GCTATTCCGCCATAGCATAG+CGG + chr6_1:31986631-31986650 Msa0882570:intron 50.0%
! CGCCATAGCATAGCGGAATT+TGG + chr6_1:31986638-31986657 Msa0882570:intron 50.0%
GGAAGAGAACTGCCCCAAAA+CGG + chr6_1:31986918-31986937 Msa0882570:intron 50.0%
TGCCATGACCCTTCCATCTT+TGG + chr6_1:31987123-31987142 Msa0882570:intron 50.0%
ATTAGTAGTAACCGGGCGTC+CGG - chr6_1:31988499-31988518 None:intergenic 50.0%
GCTGGATTTGCATTGCTCCA+CGG - chr6_1:31988534-31988553 None:intergenic 50.0%
TGGGAAGACGGCTTATATGC+TGG - chr6_1:31988552-31988571 None:intergenic 50.0%
GATTGTTGTACTCCACTGGC+AGG - chr6_1:31988645-31988664 None:intergenic 50.0%
CTCGGATTGTTGTACTCCAC+TGG - chr6_1:31988649-31988668 None:intergenic 50.0%
CAGTGGAGTACAACAATCCG+AGG + chr6_1:31988647-31988666 Msa0882570:CDS 50.0%
GGAGTACAACAATCCGAGGA+AGG + chr6_1:31988651-31988670 Msa0882570:CDS 50.0%
TGCTGTCTCTCGGTATCTCT+CGG + chr6_1:31988753-31988772 Msa0882570:CDS 50.0%
ACTGTCAGGGGATGTCATGA+AGG - chr6_1:31988790-31988809 None:intergenic 50.0%
CTACAACCGCTATCCTTCAC+TGG + chr6_1:31988862-31988881 Msa0882570:CDS 50.0%
! ACGGACTGACAAACCAGTGA+AGG - chr6_1:31988878-31988897 None:intergenic 50.0%
CACAAACTCAGATGGGAACC+CGG + chr6_1:31988903-31988922 Msa0882570:CDS 50.0%
AACCTCGAAGCTGTCTGAAC+CGG - chr6_1:31988925-31988944 None:intergenic 50.0%
TTCGTCCAGCTGACACCAAT+AGG + chr6_1:31989000-31989019 Msa0882570:CDS 50.0%
!! TAAGGCCTATTGGTGTCAGC+TGG - chr6_1:31989008-31989027 None:intergenic 50.0%
TGCTAGACTCACCCCACAAA+AGG + chr6_1:31989097-31989116 Msa0882570:CDS 50.0%
! TTTTTCCCAATGGCCCGGCA+AGG - chr6_1:31986423-31986442 None:intergenic 55.0%
AGAGAACTGCCCCAAAACGG+TGG + chr6_1:31986921-31986940 Msa0882570:intron 55.0%
GAGAACTGCCCCAAAACGGT+GGG + chr6_1:31986922-31986941 Msa0882570:intron 55.0%
! ATCAGCATTGGACCTGCCAG+TGG + chr6_1:31988630-31988649 Msa0882570:CDS 55.0%
TCTCTCGGTATCTCTCGGTC+CGG + chr6_1:31988758-31988777 Msa0882570:CDS 55.0%
! TGTCATCCTCAAGGGTGCAG+TGG + chr6_1:31988812-31988831 Msa0882570:CDS 55.0%
ATGATGCCACTGCACCCTTG+AGG - chr6_1:31988821-31988840 None:intergenic 55.0%
ACCTCGAAGCTGTCTGAACC+GGG - chr6_1:31988924-31988943 None:intergenic 55.0%
TTACAGCCTTGCCGGGCCAT+TGG + chr6_1:31986414-31986433 Msa0882570:intron 60.0%
TACAGCCTTGCCGGGCCATT+GGG + chr6_1:31986415-31986434 Msa0882570:intron 60.0%
ACCCGGTTCAGACAGCTTCG+AGG + chr6_1:31988920-31988939 Msa0882570:CDS 60.0%
AGTAACCGGGCGTCCGGATG+TGG - chr6_1:31988493-31988512 None:intergenic 65.0%
GTCCTCCACATCCGGACGCC+CGG + chr6_1:31988485-31988504 Msa0882570:CDS 70.0%
AACCGGGCGTCCGGATGTGG+AGG - chr6_1:31988490-31988509 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 31984244 31989414 31984244 ID=Msa0882570;Name=Msa0882570
chr6_1 mRNA 31984244 31989414 31984244 ID=Msa0882570-mRNA-1;Parent=Msa0882570;Name=Msa0882570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=61|1|1|1|1|1|2|263|250
chr6_1 exon 31984244 31984374 31984244 ID=Msa0882570-mRNA-1:exon:7902;Parent=Msa0882570-mRNA-1
chr6_1 exon 31988469 31989414 31988469 ID=Msa0882570-mRNA-1:exon:7903;Parent=Msa0882570-mRNA-1
chr6_1 five_prime_UTR 31984244 31984304 31984244 ID=Msa0882570-mRNA-1:five_prime_utr;Parent=Msa0882570-mRNA-1
chr6_1 CDS 31984305 31984374 31984305 ID=Msa0882570-mRNA-1:cds;Parent=Msa0882570-mRNA-1
chr6_1 CDS 31988469 31989151 31988469 ID=Msa0882570-mRNA-1:cds;Parent=Msa0882570-mRNA-1
chr6_1 three_prime_UTR 31989152 31989414 31989152 ID=Msa0882570-mRNA-1:three_prime_utr;Parent=Msa0882570-mRNA-1
Gene Sequence

>Msa0882570

ATGAGTTTGATTCAGTTGCTCCGATCACAAACCCGCAACCGTTTATCTTCTTCCTTATCATCTCCTTCAGTGTACCAGTGTTTTAGGTCCTCCACATCCGGACGCCCGGTTACTACTAATCCAACAATCAAACCGTGGAGCAATGCAAATCCAGCATATAAGCCGTCTTCCCAATTTACTGCATCTCAAATGAGATGGGCATCAAAAGGCACAACAACAGAGGAAGACAAGATCAGCATTGGACCTGCCAGTGGAGTACAACAATCCGAGGAAGGAAAAAAGGACACCGCAGTTTACTACTACGGTCCAATCTCAAGTACCATAAAAAAAGTAAAACTTCTATCTCTCTCAACTTGCTGTCTCTCGGTATCTCTCGGTCCGGTCATAACCTTCATGACATCCCCTGACAGTAATGTCATCCTCAAGGGTGCAGTGGCATCATCAGTAATATTCTTTAGCGCTTCTACAACCGCTATCCTTCACTGGTTTGTCAGTCCGTATGTTCACAAACTCAGATGGGAACCCGGTTCAGACAGCTTCGAGGTTGAGATGTTGTCATGGTTGGCAACACATATCCCAAAGACTATCAAGTTTTCGGATATTCGTCCAGCTGACACCAATAGGCCTTATGTGACATTTAAGGCTAATGGAAATTTCTATTTTGTGGACACAGAACACTGTCACAATAAGGCACTTCTTGCTAGACTCACCCCACAAAAGGAAACTCATGATTCTGCTTTCAAGAACTTGTGA

Protein sequence

>Msa0882570

MSLIQLLRSQTRNRLSSSLSSPSVYQCFRSSTSGRPVTTNPTIKPWSNANPAYKPSSQFTASQMRWASKGTTTEEDKISIGPASGVQQSEEGKKDTAVYYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPDSNVILKGAVASSVIFFSASTTAILHWFVSPYVHKLRWEPGSDSFEVEMLSWLATHIPKTIKFSDIRPADTNRPYVTFKANGNFYFVDTEHCHNKALLARLTPQKETHDSAFKNL*