Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885540 | XP_039690896.1 | 94.495 | 327 | 18 | 0 | 1 | 327 | 1 | 327 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885540 | sp|Q84V25|ENOXE_FRAAN | 72.611 | 314 | 86 | 0 | 14 | 327 | 8 | 321 | 2.71e-158 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885540 | A0A396HJ19 | 94.495 | 327 | 18 | 0 | 1 | 327 | 1 | 327 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657720 | Msa0885540 | 0.804717 | 1.889318e-49 | -8.615850e-47 |
| Msa0702790 | Msa0885540 | 0.801573 | 8.447689e-49 | -8.615850e-47 |
| Msa0189680 | Msa0885540 | 0.804408 | 2.191936e-49 | -8.615850e-47 |
| Msa0231990 | Msa0885540 | 0.801814 | 7.540267e-49 | -8.615850e-47 |
| Msa0232060 | Msa0885540 | 0.818962 | 1.490835e-52 | -8.615850e-47 |
| Msa0881280 | Msa0885540 | 0.803276 | 3.766622e-49 | -8.615850e-47 |
| Msa0885540 | Msa0912700 | 0.807846 | 4.140973e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885540 | MtrunA17_Chr6g0465501 | 94.495 | 327 | 18 | 0 | 1 | 327 | 1 | 327 | 0.0 | 598 |
| Msa0885540 | MtrunA17_Chr6g0466321 | 94.495 | 327 | 18 | 0 | 1 | 327 | 1 | 327 | 0.0 | 598 |
| Msa0885540 | MtrunA17_Chr7g0228011 | 72.990 | 311 | 84 | 0 | 17 | 327 | 6 | 316 | 3.23e-150 | 424 |
| Msa0885540 | MtrunA17_Chr8g0365421 | 61.162 | 327 | 126 | 1 | 1 | 327 | 58 | 383 | 1.97e-144 | 412 |
| Msa0885540 | MtrunA17_Chr6g0453201 | 68.153 | 314 | 100 | 0 | 14 | 327 | 6 | 319 | 5.96e-143 | 406 |
| Msa0885540 | MtrunA17_Chr6g0453191 | 67.474 | 289 | 94 | 0 | 14 | 302 | 6 | 294 | 9.08e-130 | 372 |
| Msa0885540 | MtrunA17_Chr8g0351271 | 46.429 | 308 | 157 | 6 | 20 | 324 | 5 | 307 | 4.39e-83 | 254 |
| Msa0885540 | MtrunA17_Chr8g0351481 | 46.429 | 308 | 157 | 6 | 20 | 324 | 5 | 307 | 6.24e-83 | 254 |
| Msa0885540 | MtrunA17_Chr6g0465551 | 90.000 | 80 | 8 | 0 | 1 | 80 | 1 | 80 | 3.22e-48 | 156 |
| Msa0885540 | MtrunA17_Chr4g0015051 | 31.953 | 338 | 185 | 10 | 20 | 326 | 7 | 330 | 3.57e-34 | 127 |
| Msa0885540 | MtrunA17_Chr4g0014691 | 31.348 | 319 | 178 | 8 | 37 | 326 | 23 | 329 | 2.98e-33 | 125 |
| Msa0885540 | MtrunA17_Chr4g0014541 | 31.348 | 319 | 178 | 8 | 37 | 326 | 23 | 329 | 3.34e-33 | 125 |
| Msa0885540 | MtrunA17_Chr4g0014951 | 31.737 | 334 | 183 | 11 | 24 | 326 | 11 | 330 | 7.60e-33 | 124 |
| Msa0885540 | MtrunA17_Chr4g0015091 | 31.090 | 312 | 174 | 9 | 42 | 324 | 28 | 327 | 4.39e-31 | 119 |
| Msa0885540 | MtrunA17_Chr4g0014971 | 31.250 | 336 | 190 | 11 | 20 | 326 | 7 | 330 | 8.04e-31 | 119 |
| Msa0885540 | MtrunA17_Chr7g0235021 | 31.420 | 331 | 189 | 11 | 20 | 323 | 7 | 326 | 5.07e-30 | 116 |
| Msa0885540 | MtrunA17_Chr4g0014931 | 30.588 | 340 | 187 | 11 | 20 | 326 | 7 | 330 | 1.99e-28 | 112 |
| Msa0885540 | MtrunA17_Chr2g0316731 | 31.686 | 344 | 186 | 13 | 19 | 324 | 26 | 358 | 7.33e-28 | 111 |
| Msa0885540 | MtrunA17_Chr2g0281301 | 26.822 | 343 | 198 | 12 | 17 | 324 | 12 | 336 | 1.49e-23 | 99.0 |
| Msa0885540 | MtrunA17_Chr4g0045041 | 26.562 | 320 | 182 | 9 | 45 | 324 | 314 | 620 | 1.01e-22 | 99.0 |
| Msa0885540 | MtrunA17_Chr4g0045061 | 26.250 | 320 | 183 | 9 | 45 | 324 | 314 | 620 | 7.07e-22 | 96.3 |
| Msa0885540 | MtrunA17_Chr2g0281281 | 27.103 | 321 | 175 | 13 | 43 | 324 | 23 | 323 | 7.39e-22 | 94.4 |
| Msa0885540 | MtrunA17_Chr3g0128511 | 32.389 | 247 | 140 | 8 | 26 | 259 | 18 | 250 | 4.87e-19 | 86.7 |
| Msa0885540 | MtrunA17_Chr4g0015001 | 30.000 | 230 | 129 | 7 | 122 | 324 | 5 | 229 | 2.31e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0885540 | AT1G23740.1 | 61.392 | 316 | 121 | 1 | 12 | 327 | 71 | 385 | 4.75e-137 | 394 |
| Msa0885540 | AT4G13010.1 | 30.094 | 319 | 182 | 8 | 37 | 326 | 23 | 329 | 1.09e-29 | 116 |
| Msa0885540 | AT3G15090.1 | 33.992 | 253 | 151 | 9 | 14 | 259 | 27 | 270 | 1.36e-27 | 111 |
| Msa0885540 | AT3G56460.1 | 34.979 | 243 | 131 | 8 | 30 | 259 | 23 | 251 | 1.99e-25 | 104 |
| Msa0885540 | AT4G21580.1 | 27.353 | 340 | 194 | 12 | 20 | 324 | 2 | 323 | 1.16e-23 | 99.8 |
| Msa0885540 | AT1G49670.1 | 28.205 | 312 | 175 | 10 | 49 | 324 | 318 | 616 | 1.06e-22 | 99.4 |
| Msa0885540 | AT4G21580.3 | 27.059 | 340 | 189 | 13 | 20 | 324 | 2 | 317 | 1.76e-21 | 93.6 |
| Msa0885540 | AT4G21580.2 | 25.088 | 283 | 164 | 9 | 74 | 324 | 24 | 290 | 3.02e-14 | 72.4 |
| Msa0885540 | AT5G61510.1 | 27.190 | 331 | 196 | 13 | 26 | 326 | 91 | 406 | 3.39e-13 | 70.5 |
| Msa0885540 | AT5G61510.2 | 27.010 | 311 | 184 | 11 | 46 | 326 | 52 | 349 | 5.39e-12 | 66.2 |
Find 78 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGGAAGCTTTGCTATTC+AGG | 0.194050 | 6_1:+42078513 | Msa0885540:CDS |
| CAGCTTGCCAAACATGTTTA+TGG | 0.207808 | 6_1:+42079752 | Msa0885540:intron |
| TCAATAAAGCTTAGATTCTT+TGG | 0.215944 | 6_1:-42078388 | None:intergenic |
| TCTTGTAATCAACAGGATTA+AGG | 0.247743 | 6_1:-42077007 | None:intergenic |
| TTCTAAAGTTACATCCTAAT+TGG | 0.278197 | 6_1:+42076931 | Msa0885540:CDS |
| GATCATTGGTTTCATGTAAT+GGG | 0.290307 | 6_1:-42080667 | None:intergenic |
| ACAAAGTGCCAAGAATCTTT+AGG | 0.297216 | 6_1:-42078324 | None:intergenic |
| AATAGCTGAAGAGAGATTAT+TGG | 0.302420 | 6_1:+42078357 | Msa0885540:CDS |
| TTCAAGAGCTACCGGAAAAT+TGG | 0.304982 | 6_1:+42080636 | Msa0885540:CDS |
| AATTGAAGTGGTGAAATTTA+AGG | 0.305990 | 6_1:+42078255 | Msa0885540:CDS |
| CTTTCAAACCTAAAGATTCT+TGG | 0.317314 | 6_1:+42078316 | Msa0885540:CDS |
| TAGGGCTATGAAGGCAATTA+AGG | 0.325646 | 6_1:+42080423 | Msa0885540:CDS |
| GCTTCAACGACGTCTGAAAA+TGG | 0.328542 | 6_1:-42080595 | None:intergenic |
| AGTTGAGGTATGGACCAATT+AGG | 0.329265 | 6_1:-42076945 | None:intergenic |
| TTCTCCTTTGTATAATCAAT+TGG | 0.357485 | 6_1:-42079845 | None:intergenic |
| GTACCAGGCTTTGATGTTGC+TGG | 0.358510 | 6_1:+42078214 | Msa0885540:CDS |
| AGATCATTGGTTTCATGTAA+TGG | 0.359036 | 6_1:-42080668 | None:intergenic |
| GTGATGTAGGGGAAGTTGAT+AGG | 0.368988 | 6_1:+42080404 | Msa0885540:intron |
| CTTGTAATCAACAGGATTAA+GGG | 0.375473 | 6_1:-42077006 | None:intergenic |
| TTCTTTGTGCTCACTTCTAA+AGG | 0.381735 | 6_1:+42080496 | Msa0885540:CDS |
| ATCCTTGTCTTGGGAGGTGC+TGG | 0.386559 | 6_1:+42078487 | Msa0885540:CDS |
| TTGGGAGGTGCTGGTGGAGT+TGG | 0.387165 | 6_1:+42078496 | Msa0885540:CDS |
| GAAAATGGTATAGGAGTCTT+GGG | 0.397714 | 6_1:-42080580 | None:intergenic |
| AATTGACCACTTTCAAAGTA+AGG | 0.398467 | 6_1:-42080541 | None:intergenic |
| TGCATCCTCTTGTAATCAAC+AGG | 0.411281 | 6_1:-42077014 | None:intergenic |
| GTCATCTTTGAGTTGAGGTA+TGG | 0.412969 | 6_1:-42076955 | None:intergenic |
| AGATGCACCATAAACATGTT+TGG | 0.415334 | 6_1:-42079759 | None:intergenic |
| AAGGTTGGAGATGAAATATA+TGG | 0.416415 | 6_1:+42078274 | Msa0885540:CDS |
| TGGCAAATCTATCCTTGTCT+TGG | 0.426090 | 6_1:+42078477 | Msa0885540:CDS |
| AGGGTCAGTGTCCTTGAATA+AGG | 0.428200 | 6_1:-42077039 | None:intergenic |
| AAAATAGCTGGTGGAAATCC+TGG | 0.433616 | 6_1:-42080475 | None:intergenic |
| GGCAAATCTATCCTTGTCTT+GGG | 0.446782 | 6_1:+42078478 | Msa0885540:CDS |
| GGAGTCTTGGGGTCAAGTCT+TGG | 0.450924 | 6_1:-42080568 | None:intergenic |
| ACGACGTCTGAAAATGGTAT+AGG | 0.451761 | 6_1:-42080589 | None:intergenic |
| TGTAACTTTAGAATATCTAA+TGG | 0.459660 | 6_1:-42076921 | None:intergenic |
| TGAAAATGGTATAGGAGTCT+TGG | 0.460489 | 6_1:-42080581 | None:intergenic |
| TGATGTAGGGGAAGTTGATA+GGG | 0.461956 | 6_1:+42080405 | Msa0885540:intron |
| TTAAGACCTTACTTTGAAAG+TGG | 0.474636 | 6_1:+42080535 | Msa0885540:CDS |
| GAGGATGCATGCCTTATTCA+AGG | 0.499881 | 6_1:+42077028 | Msa0885540:CDS |
| TTCCAACTCATACAAAAGCT+TGG | 0.500152 | 6_1:+42076877 | Msa0885540:CDS |
| GAGAGAGCTGAGCTTTCTGC+TGG | 0.500936 | 6_1:+42078457 | Msa0885540:CDS |
| CAACAACCTTGATGAGGACT+TGG | 0.502267 | 6_1:-42076977 | None:intergenic |
| GTTGGAATAGTAACATTAGT+AGG | 0.503552 | 6_1:-42076861 | None:intergenic |
| GGAAGTTGATAGGGCTATGA+AGG | 0.506979 | 6_1:+42080414 | Msa0885540:CDS |
| CTTGTCTTGGGAGGTGCTGG+TGG | 0.513724 | 6_1:+42078490 | Msa0885540:CDS |
| TAAGCTGTCTCCATGGCTAA+AGG | 0.514084 | 6_1:-42078424 | None:intergenic |
| GAAGTGGTGAAATTTAAGGT+TGG | 0.516620 | 6_1:+42078259 | Msa0885540:CDS |
| TTAATCCTGTTGATTACAAG+AGG | 0.525834 | 6_1:+42077009 | Msa0885540:CDS |
| GTGAGCACAAAGAAAATAGC+TGG | 0.528975 | 6_1:-42080487 | None:intergenic |
| ACTTGGTCATCTTTGAGTTG+AGG | 0.531211 | 6_1:-42076960 | None:intergenic |
| AAGTTTGATGTAGTGTATGA+TGG | 0.540914 | 6_1:+42079887 | Msa0885540:CDS |
| GCCATGGAGACAGCTTATGA+AGG | 0.541853 | 6_1:+42078430 | Msa0885540:CDS |
| TTAGAGACTTCAAGAGCTAC+CGG | 0.550921 | 6_1:+42080628 | Msa0885540:CDS |
| TTGGGTGAGAAGATTGTACC+AGG | 0.552415 | 6_1:+42078199 | Msa0885540:intron |
| TGCTAGCATTCCTTTAGCCA+TGG | 0.557600 | 6_1:+42078414 | Msa0885540:CDS |
| TGCTGGCATAGTAATTAAAG+TGG | 0.567681 | 6_1:+42078231 | Msa0885540:CDS |
| TCCTTCATAAGCTGTCTCCA+TGG | 0.575917 | 6_1:-42078431 | None:intergenic |
| AATTAAAGTGGGAATTGAAG+TGG | 0.578194 | 6_1:+42078243 | Msa0885540:CDS |
| CTTGCCAATTGATTATACAA+AGG | 0.579434 | 6_1:+42079841 | Msa0885540:CDS |
| AGTTAACATACAGGTAGATG+AGG | 0.585165 | 6_1:-42077059 | None:intergenic |
| AGCTCTTGAAGTCTCTAAGT+AGG | 0.585847 | 6_1:-42080623 | None:intergenic |
| AAATCTATCCTTGTCTTGGG+AGG | 0.587774 | 6_1:+42078481 | Msa0885540:CDS |
| GTTGTGACAATAGTACCTCC+AGG | 0.590262 | 6_1:+42080457 | Msa0885540:CDS |
| GATGTAGTGTATGATGGAGT+AGG | 0.591662 | 6_1:+42079893 | Msa0885540:CDS |
| CACCAGCACCTCCCAAGACA+AGG | 0.592723 | 6_1:-42078489 | None:intergenic |
| GCTTGGTTCTACTCTGAACA+TGG | 0.593786 | 6_1:+42076894 | Msa0885540:CDS |
| ATGCCAGCAACATCAAAGCC+TGG | 0.598693 | 6_1:-42078217 | None:intergenic |
| TATGGTGACATCAATGAGGA+AGG | 0.611730 | 6_1:+42078292 | Msa0885540:CDS |
| AGATGACCAAGTCCTCATCA+AGG | 0.619767 | 6_1:+42076971 | Msa0885540:CDS |
| GCTGGCATAGTAATTAAAGT+GGG | 0.631964 | 6_1:+42078232 | Msa0885540:CDS |
| ATGAAGGCAATTAAGGAAGG+TGG | 0.640781 | 6_1:+42080430 | Msa0885540:CDS |
| AGCACAAAGAAAATAGCTGG+TGG | 0.644145 | 6_1:-42080484 | None:intergenic |
| GCTATGAAGGCAATTAAGGA+AGG | 0.645710 | 6_1:+42080427 | Msa0885540:CDS |
| GTTAACATACAGGTAGATGA+GGG | 0.655572 | 6_1:-42077058 | None:intergenic |
| AAGCAGCAACAACCTTGATG+AGG | 0.675221 | 6_1:-42076983 | None:intergenic |
| AATATATGGTGACATCAATG+AGG | 0.688125 | 6_1:+42078288 | Msa0885540:CDS |
| ATAGCTGGTGGAAATCCTGG+AGG | 0.744206 | 6_1:-42080472 | None:intergenic |
| AAAATGGTATAGGAGTCTTG+GGG | 0.746854 | 6_1:-42080579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAAAAAATTAAAA+GGG | - | chr6_1:42079236-42079255 | None:intergenic | 0.0% |
| !! | AAATAAATAAAAAAATTAAA+AGG | - | chr6_1:42079237-42079256 | None:intergenic | 0.0% |
| !!! | TTAATTTTTTTATTTATTTA+AGG | + | chr6_1:42079238-42079257 | Msa0885540:intron | 0.0% |
| !!! | TAATTTTTTTATTTATTTAA+GGG | + | chr6_1:42079239-42079258 | Msa0885540:intron | 0.0% |
| !!! | AGTGTTATTTTTATATATAA+TGG | - | chr6_1:42078100-42078119 | None:intergenic | 10.0% |
| !!! | ATTTTTTTATTTATTTAAGG+GGG | + | chr6_1:42079241-42079260 | Msa0885540:intron | 10.0% |
| !! | AAAAAATATATTTACATGTT+TGG | + | chr6_1:42079726-42079745 | Msa0885540:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTGTC+AGG | - | chr6_1:42077258-42077277 | None:intergenic | 15.0% |
| !!! | ACTTTTTATAAATTGTGTTT+AGG | - | chr6_1:42077370-42077389 | None:intergenic | 15.0% |
| !! | AAAAACAAAATCTAATACAA+GGG | - | chr6_1:42077404-42077423 | None:intergenic | 15.0% |
| !! | TAAAAACAAAATCTAATACA+AGG | - | chr6_1:42077405-42077424 | None:intergenic | 15.0% |
| !!! | TGAGTTTTTTTTTATATACT+AGG | + | chr6_1:42077628-42077647 | Msa0885540:intron | 15.0% |
| !!! | AAAGCGTATTTTTTTTTTTT+AGG | + | chr6_1:42077726-42077745 | Msa0885540:intron | 15.0% |
| !!! | AAGCGTATTTTTTTTTTTTA+GGG | + | chr6_1:42077727-42077746 | Msa0885540:intron | 15.0% |
| !! | TTTATAAAAATTGAACATCA+AGG | + | chr6_1:42078008-42078027 | Msa0885540:intron | 15.0% |
| !!! | TTTATATATAATGGTTCTAA+AGG | - | chr6_1:42078091-42078110 | None:intergenic | 15.0% |
| !!! | ATGAATGTTTTTTAAGAAAA+TGG | - | chr6_1:42078156-42078175 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTATATTTCATTC+TGG | - | chr6_1:42078583-42078602 | None:intergenic | 15.0% |
| !!! | AAAATTGACTTTTTGTAAAA+GGG | - | chr6_1:42079129-42079148 | None:intergenic | 15.0% |
| !! | ATATTACATAGACTAAAATA+GGG | - | chr6_1:42079392-42079411 | None:intergenic | 15.0% |
| !! | AATATTACATAGACTAAAAT+AGG | - | chr6_1:42079393-42079412 | None:intergenic | 15.0% |
| !! | TATTATATGAATCAAGTATT+AGG | + | chr6_1:42079567-42079586 | Msa0885540:intron | 15.0% |
| !! | ATTATATGAATCAAGTATTA+GGG | + | chr6_1:42079568-42079587 | Msa0885540:intron | 15.0% |
| !! | TGTAATAGGTATTAAAAAAT+TGG | + | chr6_1:42079645-42079664 | Msa0885540:intron | 15.0% |
| !! | GTAATAGGTATTAAAAAATT+GGG | + | chr6_1:42079646-42079665 | Msa0885540:intron | 15.0% |
| !! | TAATAGGTATTAAAAAATTG+GGG | + | chr6_1:42079647-42079666 | Msa0885540:intron | 15.0% |
| !!! | AATTTTTAAGTATTAATCCA+TGG | + | chr6_1:42080250-42080269 | Msa0885540:intron | 15.0% |
| !!! | TGTAACTTTAGAATATCTAA+TGG | - | chr6_1:42076924-42076943 | None:intergenic | 20.0% |
| !! | AATTTATAAGGTGAATAAGT+GGG | - | chr6_1:42077215-42077234 | None:intergenic | 20.0% |
| !! | TACACATTATATGTAGAAAA+AGG | + | chr6_1:42077565-42077584 | Msa0885540:intron | 20.0% |
| !! | ACACATTATATGTAGAAAAA+GGG | + | chr6_1:42077566-42077585 | Msa0885540:intron | 20.0% |
| !! | ATTAATTCTTCAAACTTGAT+AGG | - | chr6_1:42077862-42077881 | None:intergenic | 20.0% |
| !! | TTAATTAAGTGATGAGAATT+TGG | + | chr6_1:42078033-42078052 | Msa0885540:intron | 20.0% |
| !!! | TGCTTTATGAATTATTTTGT+TGG | + | chr6_1:42078180-42078199 | Msa0885540:intron | 20.0% |
| !!! | GCTTTATGAATTATTTTGTT+GGG | + | chr6_1:42078181-42078200 | Msa0885540:intron | 20.0% |
| !!! | TAAAAAAAAGTACATGTATC+TGG | - | chr6_1:42078633-42078652 | None:intergenic | 20.0% |
| !!! | AATATTTTTGATTTAATGCG+TGG | + | chr6_1:42078729-42078748 | Msa0885540:intron | 20.0% |
| !!! | ATATTTCTAGAAGTTAGTTA+AGG | - | chr6_1:42078855-42078874 | None:intergenic | 20.0% |
| !!! | CAAAATTGACTTTTTGTAAA+AGG | - | chr6_1:42079130-42079149 | None:intergenic | 20.0% |
| !! | TTAACAAATCTTACAAAGTT+AGG | + | chr6_1:42079267-42079286 | Msa0885540:intron | 20.0% |
| !! | TTTAATTCCATATCATATGA+AGG | + | chr6_1:42079421-42079440 | Msa0885540:intron | 20.0% |
| !! | TTATATGAATCAAGTATTAG+GGG | + | chr6_1:42079569-42079588 | Msa0885540:intron | 20.0% |
| !! | ATATGTACGTACAAATAAAT+AGG | - | chr6_1:42079924-42079943 | None:intergenic | 20.0% |
| !! | ATATGGATAATCTTTATAAG+TGG | - | chr6_1:42080280-42080299 | None:intergenic | 20.0% |
| !! | AAGTTAGAGAAAAGAAAATA+TGG | - | chr6_1:42080297-42080316 | None:intergenic | 20.0% |
| !! | TAACTTTGCATTCATTAAAT+AGG | + | chr6_1:42080311-42080330 | Msa0885540:intron | 20.0% |
| !! | AACTTTGCATTCATTAAATA+GGG | + | chr6_1:42080312-42080331 | Msa0885540:intron | 20.0% |
| !!! | TTCTAAAGTTACATCCTAAT+TGG | + | chr6_1:42076931-42076950 | Msa0885540:CDS | 25.0% |
| ! | TAAAGAGAAAGTTAACATAC+AGG | - | chr6_1:42077071-42077090 | None:intergenic | 25.0% |
| ! | ATTTATAAGGTGAATAAGTG+GGG | - | chr6_1:42077214-42077233 | None:intergenic | 25.0% |
| ! | CAATTTATAAGGTGAATAAG+TGG | - | chr6_1:42077216-42077235 | None:intergenic | 25.0% |
| ! | TGGCTAGAATTCAATTTATA+AGG | - | chr6_1:42077227-42077246 | None:intergenic | 25.0% |
| ! | AAACAACTCATGTTAGTATT+TGG | + | chr6_1:42077273-42077292 | Msa0885540:intron | 25.0% |
| !! | GTAAGCTGAATTTTCTTAAT+AGG | - | chr6_1:42077328-42077347 | None:intergenic | 25.0% |
| ! | TAAGAAAATTCAGCTTACTT+TGG | + | chr6_1:42077330-42077349 | Msa0885540:intron | 25.0% |
| ! | CACATTATATGTAGAAAAAG+GGG | + | chr6_1:42077567-42077586 | Msa0885540:intron | 25.0% |
| ! | AAAAAAAAACTCAGCTCTTA+AGG | - | chr6_1:42077621-42077640 | None:intergenic | 25.0% |
| ! | AATTATTAATACCTCTCTTG+AGG | + | chr6_1:42077812-42077831 | Msa0885540:intron | 25.0% |
| ! | ATTATTAATACCTCTCTTGA+GGG | + | chr6_1:42077813-42077832 | Msa0885540:intron | 25.0% |
| ! | AATTTGGCATTATAATCTCA+AGG | + | chr6_1:42078049-42078068 | Msa0885540:intron | 25.0% |
| !!! | TTTTTTAAGAAAATGGCAAG+AGG | - | chr6_1:42078149-42078168 | None:intergenic | 25.0% |
| ! | AATTGAAGTGGTGAAATTTA+AGG | + | chr6_1:42078255-42078274 | Msa0885540:CDS | 25.0% |
| ! | TCAATAAAGCTTAGATTCTT+TGG | - | chr6_1:42078391-42078410 | None:intergenic | 25.0% |
| ! | TTGTTTATATTTCATTCTGG+AGG | - | chr6_1:42078580-42078599 | None:intergenic | 25.0% |
| !! | TTCTAGAAATATCTAGAACT+GGG | + | chr6_1:42078863-42078882 | Msa0885540:intron | 25.0% |
| ! | GAGAACAATAATAGAATCTA+AGG | - | chr6_1:42079005-42079024 | None:intergenic | 25.0% |
| !!! | CTTTAACTTGTAAAGTTAGA+AGG | - | chr6_1:42079052-42079071 | None:intergenic | 25.0% |
| !! | ACAAGTTAAAGTTGTGATTT+TGG | + | chr6_1:42079061-42079080 | Msa0885540:intron | 25.0% |
| !!! | AAACCGTTATTTGATTTGTA+GGG | - | chr6_1:42079089-42079108 | None:intergenic | 25.0% |
| !!! | AAAACCGTTATTTGATTTGT+AGG | - | chr6_1:42079090-42079109 | None:intergenic | 25.0% |
| !! | CTTCATATGATATGGAATTT+TGG | - | chr6_1:42079523-42079542 | None:intergenic | 25.0% |
| ! | TTAGTCATCTTCATATGATA+TGG | - | chr6_1:42079531-42079550 | None:intergenic | 25.0% |
| ! | CAACAAGAATCAATTGTAAT+AGG | + | chr6_1:42079631-42079650 | Msa0885540:intron | 25.0% |
| ! | TTCTCCTTTGTATAATCAAT+TGG | - | chr6_1:42079848-42079867 | None:intergenic | 25.0% |
| !!! | TTTTAAGTATTAATCCATGG+TGG | + | chr6_1:42080253-42080272 | Msa0885540:intron | 25.0% |
| ! | ACTTTGCATTCATTAAATAG+GGG | + | chr6_1:42080313-42080332 | Msa0885540:intron | 25.0% |
| GTTGGAATAGTAACATTAGT+AGG | - | chr6_1:42076864-42076883 | None:intergenic | 30.0% | |
| CTTGTAATCAACAGGATTAA+GGG | - | chr6_1:42077009-42077028 | None:intergenic | 30.0% | |
| TCTTGTAATCAACAGGATTA+AGG | - | chr6_1:42077010-42077029 | None:intergenic | 30.0% | |
| ! | TTAATCCTGTTGATTACAAG+AGG | + | chr6_1:42077009-42077028 | Msa0885540:CDS | 30.0% |
| TTTGTCATAACAACTCATGT+TGG | + | chr6_1:42077139-42077158 | Msa0885540:intron | 30.0% | |
| TAAATTGAATTCTAGCCACT+AGG | + | chr6_1:42077229-42077248 | Msa0885540:intron | 30.0% | |
| GAATCTCAACATACTCTTTA+AGG | - | chr6_1:42077755-42077774 | None:intergenic | 30.0% | |
| AAACTTGATAGGACCTATAT+GGG | - | chr6_1:42077851-42077870 | None:intergenic | 30.0% | |
| AATTAAAGTGGGAATTGAAG+TGG | + | chr6_1:42078243-42078262 | Msa0885540:CDS | 30.0% | |
| AAGGTTGGAGATGAAATATA+TGG | + | chr6_1:42078274-42078293 | Msa0885540:CDS | 30.0% | |
| AATATATGGTGACATCAATG+AGG | + | chr6_1:42078288-42078307 | Msa0885540:CDS | 30.0% | |
| CTTTCAAACCTAAAGATTCT+TGG | + | chr6_1:42078316-42078335 | Msa0885540:CDS | 30.0% | |
| AATAGCTGAAGAGAGATTAT+TGG | + | chr6_1:42078357-42078376 | Msa0885540:CDS | 30.0% | |
| ! | TTCTGGAGGAAATAGTTAAT+AGG | - | chr6_1:42078566-42078585 | None:intergenic | 30.0% |
| TAAGTAATAACGTACTCTCT+CGG | - | chr6_1:42078666-42078685 | None:intergenic | 30.0% | |
| GGCTCTTAGAAATATATTGA+CGG | - | chr6_1:42078756-42078775 | None:intergenic | 30.0% | |
| ! | TTTCTAGAAGTTAGTTAAGG+CGG | - | chr6_1:42078852-42078871 | None:intergenic | 30.0% |
| ! | CTTCTAGAAATATCTAGAAC+TGG | + | chr6_1:42078862-42078881 | Msa0885540:intron | 30.0% |
| GATCCCTACAAATCAAATAA+CGG | + | chr6_1:42079083-42079102 | Msa0885540:intron | 30.0% | |
| TGTAAAAGGGAGTAAAGATA+GGG | - | chr6_1:42079116-42079135 | None:intergenic | 30.0% | |
| TTGTAAAAGGGAGTAAAGAT+AGG | - | chr6_1:42079117-42079136 | None:intergenic | 30.0% | |
| ACAAATCTTACAAAGTTAGG+AGG | + | chr6_1:42079270-42079289 | Msa0885540:intron | 30.0% | |
| ! | CATATGATATGGAATTTTGG+TGG | - | chr6_1:42079520-42079539 | None:intergenic | 30.0% |
| TAAAAAATTGGGGAGTGAAA+AGG | + | chr6_1:42079657-42079676 | Msa0885540:intron | 30.0% | |
| CTGAAAATTAGCATACATTG+AGG | + | chr6_1:42079699-42079718 | Msa0885540:intron | 30.0% | |
| CTTGCCAATTGATTATACAA+AGG | + | chr6_1:42079841-42079860 | Msa0885540:CDS | 30.0% | |
| ! | ACACTACATCAAACTTTTCT+GGG | - | chr6_1:42079883-42079902 | None:intergenic | 30.0% |
| ! | TACACTACATCAAACTTTTC+TGG | - | chr6_1:42079884-42079903 | None:intergenic | 30.0% |
| AAGTTTGATGTAGTGTATGA+TGG | + | chr6_1:42079887-42079906 | Msa0885540:CDS | 30.0% | |
| ATATCTCTACAGAAGTTCTT+TGG | + | chr6_1:42079940-42079959 | Msa0885540:intron | 30.0% | |
| TCTCATATTTACGATTCACA+CGG | + | chr6_1:42080066-42080085 | Msa0885540:intron | 30.0% | |
| CATGTAGCTCATATAAAAAC+CGG | - | chr6_1:42080106-42080125 | None:intergenic | 30.0% | |
| CTTTGCATTCATTAAATAGG+GGG | + | chr6_1:42080314-42080333 | Msa0885540:intron | 30.0% | |
| ! | TTAAGACCTTACTTTGAAAG+TGG | + | chr6_1:42080535-42080554 | Msa0885540:CDS | 30.0% |
| AATTGACCACTTTCAAAGTA+AGG | - | chr6_1:42080544-42080563 | None:intergenic | 30.0% | |
| TTCCAACTCATACAAAAGCT+TGG | + | chr6_1:42076877-42076896 | Msa0885540:CDS | 35.0% | |
| ! | AACCAAGCTTTTGTATGAGT+TGG | - | chr6_1:42076882-42076901 | None:intergenic | 35.0% |
| GTTAACATACAGGTAGATGA+GGG | - | chr6_1:42077061-42077080 | None:intergenic | 35.0% | |
| AGTTAACATACAGGTAGATG+AGG | - | chr6_1:42077062-42077081 | None:intergenic | 35.0% | |
| TCATAACAACTCATGTTGGT+AGG | + | chr6_1:42077143-42077162 | Msa0885540:intron | 35.0% | |
| GACAATGCACTATTATATGC+AGG | + | chr6_1:42077165-42077184 | Msa0885540:intron | 35.0% | |
| !! | GGATATGTCTCTTAGTTTGT+TGG | - | chr6_1:42077515-42077534 | None:intergenic | 35.0% |
| ACTAACTGAGCTAAGATCTT+GGG | - | chr6_1:42077537-42077556 | None:intergenic | 35.0% | |
| TACTAACTGAGCTAAGATCT+TGG | - | chr6_1:42077538-42077557 | None:intergenic | 35.0% | |
| AAGATCTTAGCTCAGTTAGT+AGG | + | chr6_1:42077537-42077556 | Msa0885540:intron | 35.0% | |
| AGATCTTAGCTCAGTTAGTA+GGG | + | chr6_1:42077538-42077557 | Msa0885540:intron | 35.0% | |
| ! | GTGAATTTTGTCACCCATAT+AGG | + | chr6_1:42077835-42077854 | Msa0885540:intron | 35.0% |
| CAAACTTGATAGGACCTATA+TGG | - | chr6_1:42077852-42077871 | None:intergenic | 35.0% | |
| TGCTGGCATAGTAATTAAAG+TGG | + | chr6_1:42078231-42078250 | Msa0885540:CDS | 35.0% | |
| GCTGGCATAGTAATTAAAGT+GGG | + | chr6_1:42078232-42078251 | Msa0885540:CDS | 35.0% | |
| ! | GAAGTGGTGAAATTTAAGGT+TGG | + | chr6_1:42078259-42078278 | Msa0885540:CDS | 35.0% |
| ! | ACAAAGTGCCAAGAATCTTT+AGG | - | chr6_1:42078327-42078346 | None:intergenic | 35.0% |
| AGCCTAAAATCCCTATAGAA+AGG | + | chr6_1:42078772-42078791 | Msa0885540:intron | 35.0% | |
| ! | AGCCTTTCTATAGGGATTTT+AGG | - | chr6_1:42078777-42078796 | None:intergenic | 35.0% |
| AAATCCCTATAGAAAGGCTT+AGG | + | chr6_1:42078778-42078797 | Msa0885540:intron | 35.0% | |
| GTAAAAGGGAGTAAAGATAG+GGG | - | chr6_1:42079115-42079134 | None:intergenic | 35.0% | |
| CATAATATATGCAAGTTCCG+TGG | + | chr6_1:42079479-42079498 | Msa0885540:intron | 35.0% | |
| !! | GAGTGAAAAGGTGTGTTTTA+AGG | + | chr6_1:42079669-42079688 | Msa0885540:intron | 35.0% |
| AGATGCACCATAAACATGTT+TGG | - | chr6_1:42079762-42079781 | None:intergenic | 35.0% | |
| ! | CCTCAAAAACTCGATTTTTC+TGG | - | chr6_1:42079807-42079826 | None:intergenic | 35.0% |
| ! | CCAGAAAAATCGAGTTTTTG+AGG | + | chr6_1:42079804-42079823 | Msa0885540:CDS | 35.0% |
| !! | AATCGAGTTTTTGAGGAAGT+TGG | + | chr6_1:42079811-42079830 | Msa0885540:CDS | 35.0% |
| !! | ATCGAGTTTTTGAGGAAGTT+GGG | + | chr6_1:42079812-42079831 | Msa0885540:CDS | 35.0% |
| !! | TGGTGGATCATTTTCATAAG+TGG | + | chr6_1:42079960-42079979 | Msa0885540:intron | 35.0% |
| ! | TTTTCATAAGTGGTCACTTG+TGG | + | chr6_1:42079970-42079989 | Msa0885540:intron | 35.0% |
| ! | ACATCACATAGTATCGAAGA+TGG | - | chr6_1:42080391-42080410 | None:intergenic | 35.0% |
| TCTTCGATACTATGTGATGT+AGG | + | chr6_1:42080391-42080410 | Msa0885540:intron | 35.0% | |
| CTTCGATACTATGTGATGTA+GGG | + | chr6_1:42080392-42080411 | Msa0885540:intron | 35.0% | |
| TTCGATACTATGTGATGTAG+GGG | + | chr6_1:42080393-42080412 | Msa0885540:intron | 35.0% | |
| TTCTTTGTGCTCACTTCTAA+AGG | + | chr6_1:42080496-42080515 | Msa0885540:CDS | 35.0% | |
| AAAATGGTATAGGAGTCTTG+GGG | - | chr6_1:42080582-42080601 | None:intergenic | 35.0% | |
| GAAAATGGTATAGGAGTCTT+GGG | - | chr6_1:42080583-42080602 | None:intergenic | 35.0% | |
| TGAAAATGGTATAGGAGTCT+TGG | - | chr6_1:42080584-42080603 | None:intergenic | 35.0% | |
| ! | GGGATAAATGACCAATTTTC+CGG | - | chr6_1:42080650-42080669 | None:intergenic | 35.0% |
| AGTTGAGGTATGGACCAATT+AGG | - | chr6_1:42076948-42076967 | None:intergenic | 40.0% | |
| !! | GTCATCTTTGAGTTGAGGTA+TGG | - | chr6_1:42076958-42076977 | None:intergenic | 40.0% |
| !! | ACTTGGTCATCTTTGAGTTG+AGG | - | chr6_1:42076963-42076982 | None:intergenic | 40.0% |
| TGCATCCTCTTGTAATCAAC+AGG | - | chr6_1:42077017-42077036 | None:intergenic | 40.0% | |
| GCACTATTATATGCAGGAGT+CGG | + | chr6_1:42077171-42077190 | Msa0885540:intron | 40.0% | |
| CACTATTATATGCAGGAGTC+GGG | + | chr6_1:42077172-42077191 | Msa0885540:intron | 40.0% | |
| ACTATTATATGCAGGAGTCG+GGG | + | chr6_1:42077173-42077192 | Msa0885540:intron | 40.0% | |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | - | chr6_1:42077247-42077266 | None:intergenic | 40.0% |
| CTAACTGAGCTAAGATCTTG+GGG | - | chr6_1:42077536-42077555 | None:intergenic | 40.0% | |
| CAGCTCTTAAGGTGAATAAG+TGG | - | chr6_1:42077610-42077629 | None:intergenic | 40.0% | |
| ACAAAATTCACCCTCAAGAG+AGG | - | chr6_1:42077826-42077845 | None:intergenic | 40.0% | |
| TATGGTGACATCAATGAGGA+AGG | + | chr6_1:42078292-42078311 | Msa0885540:CDS | 40.0% | |
| TGGCAAATCTATCCTTGTCT+TGG | + | chr6_1:42078477-42078496 | Msa0885540:CDS | 40.0% | |
| GGCAAATCTATCCTTGTCTT+GGG | + | chr6_1:42078478-42078497 | Msa0885540:CDS | 40.0% | |
| AAATCTATCCTTGTCTTGGG+AGG | + | chr6_1:42078481-42078500 | Msa0885540:CDS | 40.0% | |
| !! | AGTTGGAAGCTTTGCTATTC+AGG | + | chr6_1:42078513-42078532 | Msa0885540:CDS | 40.0% |
| GTGGTATTTATAGCCCTTTG+TGG | - | chr6_1:42078942-42078961 | None:intergenic | 40.0% | |
| AGGGCTATAAATACCACTCT+TGG | + | chr6_1:42078945-42078964 | Msa0885540:intron | 40.0% | |
| GGGCTATAAATACCACTCTT+GGG | + | chr6_1:42078946-42078965 | Msa0885540:intron | 40.0% | |
| ACGAGGACCTTCATATGATA+TGG | - | chr6_1:42079431-42079450 | None:intergenic | 40.0% | |
| ! | TGAGATTAGCTCAGTTGGTA+GGG | + | chr6_1:42079450-42079469 | Msa0885540:intron | 40.0% |
| CAGCTTGCCAAACATGTTTA+TGG | + | chr6_1:42079752-42079771 | Msa0885540:intron | 40.0% | |
| ! | GATGTAGTGTATGATGGAGT+AGG | + | chr6_1:42079893-42079912 | Msa0885540:CDS | 40.0% |
| TCTCTACAGAAGTTCTTTGG+TGG | + | chr6_1:42079943-42079962 | Msa0885540:intron | 40.0% | |
| TCTTTATAAGTGGTCCACCA+TGG | - | chr6_1:42080270-42080289 | None:intergenic | 40.0% | |
| ! | CACATAGTATCGAAGATGGA+TGG | - | chr6_1:42080387-42080406 | None:intergenic | 40.0% |
| !! | TGATGTAGGGGAAGTTGATA+GGG | + | chr6_1:42080405-42080424 | Msa0885540:intron | 40.0% |
| TAGGGCTATGAAGGCAATTA+AGG | + | chr6_1:42080423-42080442 | Msa0885540:CDS | 40.0% | |
| GCTATGAAGGCAATTAAGGA+AGG | + | chr6_1:42080427-42080446 | Msa0885540:CDS | 40.0% | |
| ATGAAGGCAATTAAGGAAGG+TGG | + | chr6_1:42080430-42080449 | Msa0885540:CDS | 40.0% | |
| AAAATAGCTGGTGGAAATCC+TGG | - | chr6_1:42080478-42080497 | None:intergenic | 40.0% | |
| AGCACAAAGAAAATAGCTGG+TGG | - | chr6_1:42080487-42080506 | None:intergenic | 40.0% | |
| GTGAGCACAAAGAAAATAGC+TGG | - | chr6_1:42080490-42080509 | None:intergenic | 40.0% | |
| ACGACGTCTGAAAATGGTAT+AGG | - | chr6_1:42080592-42080611 | None:intergenic | 40.0% | |
| AGCTCTTGAAGTCTCTAAGT+AGG | - | chr6_1:42080626-42080645 | None:intergenic | 40.0% | |
| TTAGAGACTTCAAGAGCTAC+CGG | + | chr6_1:42080628-42080647 | Msa0885540:CDS | 40.0% | |
| TTCAAGAGCTACCGGAAAAT+TGG | + | chr6_1:42080636-42080655 | Msa0885540:CDS | 40.0% | |
| !! | GCTTGGTTCTACTCTGAACA+TGG | + | chr6_1:42076894-42076913 | Msa0885540:CDS | 45.0% |
| AGATGACCAAGTCCTCATCA+AGG | + | chr6_1:42076971-42076990 | Msa0885540:CDS | 45.0% | |
| CAACAACCTTGATGAGGACT+TGG | - | chr6_1:42076980-42076999 | None:intergenic | 45.0% | |
| AAGCAGCAACAACCTTGATG+AGG | - | chr6_1:42076986-42077005 | None:intergenic | 45.0% | |
| ! | GAGGATGCATGCCTTATTCA+AGG | + | chr6_1:42077028-42077047 | Msa0885540:CDS | 45.0% |
| AGGGTCAGTGTCCTTGAATA+AGG | - | chr6_1:42077042-42077061 | None:intergenic | 45.0% | |
| ! | GTGAATAAGTGGAGTGTCTG+AGG | - | chr6_1:42077599-42077618 | None:intergenic | 45.0% |
| TTGGGTGAGAAGATTGTACC+AGG | + | chr6_1:42078199-42078218 | Msa0885540:intron | 45.0% | |
| TGCTAGCATTCCTTTAGCCA+TGG | + | chr6_1:42078414-42078433 | Msa0885540:CDS | 45.0% | |
| TAAGCTGTCTCCATGGCTAA+AGG | - | chr6_1:42078427-42078446 | None:intergenic | 45.0% | |
| TCCTTCATAAGCTGTCTCCA+TGG | - | chr6_1:42078434-42078453 | None:intergenic | 45.0% | |
| ACTTAATCCCCAAGCATGCT+GGG | - | chr6_1:42078904-42078923 | None:intergenic | 45.0% | |
| TACTTAATCCCCAAGCATGC+TGG | - | chr6_1:42078905-42078924 | None:intergenic | 45.0% | |
| ACGCTAACACAAGTCCACAA+AGG | + | chr6_1:42078925-42078944 | Msa0885540:intron | 45.0% | |
| CGCTAACACAAGTCCACAAA+GGG | + | chr6_1:42078926-42078945 | Msa0885540:intron | 45.0% | |
| CTTGAGAATGATCCCAAGAG+TGG | - | chr6_1:42078961-42078980 | None:intergenic | 45.0% | |
| CACTCTTGGGATCATTCTCA+AGG | + | chr6_1:42078959-42078978 | Msa0885540:intron | 45.0% | |
| ! | GTGAGATTAGCTCAGTTGGT+AGG | + | chr6_1:42079449-42079468 | Msa0885540:intron | 45.0% |
| AAGTTCCGTGGTTCAAAGTC+TGG | + | chr6_1:42079491-42079510 | Msa0885540:intron | 45.0% | |
| GGTTACCAGACTTTGAACCA+CGG | - | chr6_1:42079499-42079518 | None:intergenic | 45.0% | |
| ! | GTATCGAAGATGGATGGACT+TGG | - | chr6_1:42080381-42080400 | None:intergenic | 45.0% |
| ! | GTGATGTAGGGGAAGTTGAT+AGG | + | chr6_1:42080404-42080423 | Msa0885540:intron | 45.0% |
| !! | GGAAGTTGATAGGGCTATGA+AGG | + | chr6_1:42080414-42080433 | Msa0885540:CDS | 45.0% |
| GTTGTGACAATAGTACCTCC+AGG | + | chr6_1:42080457-42080476 | Msa0885540:CDS | 45.0% | |
| GCTTCAACGACGTCTGAAAA+TGG | - | chr6_1:42080598-42080617 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTATGAAT+CGG | - | chr6_1:42077909-42077928 | None:intergenic | 5.0% |
| !!! | AATTTTTTTATTTATTTAAG+GGG | + | chr6_1:42079240-42079259 | Msa0885540:intron | 5.0% |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr6_1:42077207-42077226 | None:intergenic | 50.0% |
| ! | GTACCAGGCTTTGATGTTGC+TGG | + | chr6_1:42078214-42078233 | Msa0885540:CDS | 50.0% |
| ATGCCAGCAACATCAAAGCC+TGG | - | chr6_1:42078220-42078239 | None:intergenic | 50.0% | |
| GCCATGGAGACAGCTTATGA+AGG | + | chr6_1:42078430-42078449 | Msa0885540:CDS | 50.0% | |
| GGCGCCTAAGCCTTTCTATA+GGG | - | chr6_1:42078785-42078804 | None:intergenic | 50.0% | |
| GCTTCAGGAACCCTTCTAGA+GGG | - | chr6_1:42078806-42078825 | None:intergenic | 50.0% | |
| TAGAAGGGTTCCTGAAGCCT+AGG | + | chr6_1:42078808-42078827 | Msa0885540:intron | 50.0% | |
| ACCTACAACCCAGCATGCTT+GGG | + | chr6_1:42078893-42078912 | Msa0885540:intron | 50.0% | |
| !! | CGAATGAGTGAGCGTTGACT+TGG | - | chr6_1:42079154-42079173 | None:intergenic | 50.0% |
| CCAACTGAGCTAATCTCACG+AGG | - | chr6_1:42079448-42079467 | None:intergenic | 50.0% | |
| ! | CCTCGTGAGATTAGCTCAGT+TGG | + | chr6_1:42079445-42079464 | Msa0885540:intron | 50.0% |
| CACGGTGACTTAATCGATGC+CGG | + | chr6_1:42080084-42080103 | Msa0885540:intron | 50.0% | |
| ATAGCTGGTGGAAATCCTGG+AGG | - | chr6_1:42080475-42080494 | None:intergenic | 50.0% | |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr6_1:42077205-42077224 | None:intergenic | 55.0% |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr6_1:42077206-42077225 | None:intergenic | 55.0% |
| GAGAGAGCTGAGCTTTCTGC+TGG | + | chr6_1:42078457-42078476 | Msa0885540:CDS | 55.0% | |
| ! | ATCCTTGTCTTGGGAGGTGC+TGG | + | chr6_1:42078487-42078506 | Msa0885540:CDS | 55.0% |
| GGGCGCCTAAGCCTTTCTAT+AGG | - | chr6_1:42078786-42078805 | None:intergenic | 55.0% | |
| GGCTTCAGGAACCCTTCTAG+AGG | - | chr6_1:42078807-42078826 | None:intergenic | 55.0% | |
| TTAAGGCGGCACCACTGGAA+GGG | - | chr6_1:42078838-42078857 | None:intergenic | 55.0% | |
| GTTAGTTAAGGCGGCACCAC+TGG | - | chr6_1:42078843-42078862 | None:intergenic | 55.0% | |
| GACCTACAACCCAGCATGCT+TGG | + | chr6_1:42078892-42078911 | Msa0885540:intron | 55.0% | |
| CCTACAACCCAGCATGCTTG+GGG | + | chr6_1:42078894-42078913 | Msa0885540:intron | 55.0% | |
| GGAGTCTTGGGGTCAAGTCT+TGG | - | chr6_1:42080571-42080590 | None:intergenic | 55.0% | |
| CACCAGCACCTCCCAAGACA+AGG | - | chr6_1:42078492-42078511 | None:intergenic | 60.0% | |
| !! | CTTGTCTTGGGAGGTGCTGG+TGG | + | chr6_1:42078490-42078509 | Msa0885540:CDS | 60.0% |
| !! | TTGGGAGGTGCTGGTGGAGT+TGG | + | chr6_1:42078496-42078515 | Msa0885540:CDS | 60.0% |
| AGGCTTAGGCGCCCTCTAGA+AGG | + | chr6_1:42078792-42078811 | Msa0885540:intron | 60.0% | |
| ! | GGCTTAGGCGCCCTCTAGAA+GGG | + | chr6_1:42078793-42078812 | Msa0885540:intron | 60.0% |
| GTTAAGGCGGCACCACTGGA+AGG | - | chr6_1:42078839-42078858 | None:intergenic | 60.0% | |
| CCCCAAGCATGCTGGGTTGT+AGG | - | chr6_1:42078897-42078916 | None:intergenic | 60.0% | |
| AGGAGTCGGGGTTCGAACCC+CGG | + | chr6_1:42077185-42077204 | Msa0885540:intron | 65.0% | |
| ! | GAAGGGCGCACCTAGGCTTC+AGG | - | chr6_1:42078821-42078840 | None:intergenic | 65.0% |
| ! | ACCACTGGAAGGGCGCACCT+AGG | - | chr6_1:42078828-42078847 | None:intergenic | 65.0% |
| GCCTAGGTGCGCCCTTCCAG+TGG | + | chr6_1:42078824-42078843 | Msa0885540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 42076834 | 42080678 | 42076834 | ID=Msa0885540;Name=Msa0885540 |
| chr6_1 | mRNA | 42076834 | 42080678 | 42076834 | ID=Msa0885540-mRNA-1;Parent=Msa0885540;Name=Msa0885540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|328 |
| chr6_1 | exon | 42076834 | 42077070 | 42076834 | ID=Msa0885540-mRNA-1:exon:9259;Parent=Msa0885540-mRNA-1 |
| chr6_1 | exon | 42078211 | 42078534 | 42078211 | ID=Msa0885540-mRNA-1:exon:9260;Parent=Msa0885540-mRNA-1 |
| chr6_1 | exon | 42079755 | 42079914 | 42079755 | ID=Msa0885540-mRNA-1:exon:9261;Parent=Msa0885540-mRNA-1 |
| chr6_1 | exon | 42080413 | 42080678 | 42080413 | ID=Msa0885540-mRNA-1:exon:9262;Parent=Msa0885540-mRNA-1 |
| chr6_1 | CDS | 42076834 | 42077070 | 42076834 | ID=Msa0885540-mRNA-1:cds;Parent=Msa0885540-mRNA-1 |
| chr6_1 | CDS | 42078211 | 42078534 | 42078211 | ID=Msa0885540-mRNA-1:cds;Parent=Msa0885540-mRNA-1 |
| chr6_1 | CDS | 42079755 | 42079914 | 42079755 | ID=Msa0885540-mRNA-1:cds;Parent=Msa0885540-mRNA-1 |
| chr6_1 | CDS | 42080413 | 42080678 | 42080413 | ID=Msa0885540-mRNA-1:cds;Parent=Msa0885540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
