AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0890230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890230 MtrunA17_Chr1g0165671 73.970 461 118 2 1 461 19 477 0.0 716
Msa0890230 MtrunA17_Chr1g0165661 73.536 461 119 1 1 461 1 458 0.0 709
Msa0890230 MtrunA17_Chr1g0165681 71.584 461 131 0 1 461 1 461 0.0 707
Msa0890230 MtrunA17_Chr1g0165711 64.208 461 121 4 1 461 1 417 0.0 595
Msa0890230 MtrunA17_Chr6g0471381 95.849 265 11 0 197 461 6 270 0.0 527
Msa0890230 MtrunA17_Chr7g0273781 55.531 452 190 6 2 448 36 481 0.0 526
Msa0890230 MtrunA17_Chr7g0273791 55.778 450 188 6 5 449 6 449 0.0 520
Msa0890230 MtrunA17_Chr7g0273721 55.902 449 191 5 5 449 7 452 0.0 515
Msa0890230 MtrunA17_Chr5g0433641 55.580 448 193 5 5 449 6 450 0.0 514
Msa0890230 MtrunA17_Chr7g0273761 55.748 461 195 6 5 461 378 833 1.68e-179 523
Msa0890230 MtrunA17_Chr7g0273761 51.623 308 144 4 146 450 32 337 3.79e-99 315
Msa0890230 MtrunA17_Chr7g0273731 55.909 440 186 5 5 440 89 524 6.97e-179 511
Msa0890230 MtrunA17_Chr1g0191081 57.175 439 183 5 4 440 13 448 2.86e-178 506
Msa0890230 MtrunA17_Chr6g0471371 96.000 150 6 0 1 150 1 150 2.61e-100 297
Msa0890230 MtrunA17_Chr1g0165741 84.354 147 23 0 1 147 1 147 6.27e-86 259
Msa0890230 MtrunA17_Chr3g0132001 32.867 429 269 10 9 432 14 428 2.43e-77 248
Msa0890230 MtrunA17_Chr8g0386141 34.772 394 241 10 1 388 1 384 1.36e-74 241
Msa0890230 MtrunA17_Chr7g0224391 35.325 385 235 9 12 390 19 395 3.69e-74 239
Msa0890230 MtrunA17_Chr6g0471971 47.458 236 97 5 162 393 2 214 2.42e-73 230
Msa0890230 MtrunA17_Chr6g0471891 58.421 190 54 1 230 419 1 165 3.68e-72 227
Msa0890230 MtrunA17_Chr8g0353421 78.125 128 28 0 1 128 1 128 5.73e-69 215
Msa0890230 MtrunA17_Chr7g0273741 62.329 146 55 0 2 147 3 148 3.15e-64 204
Msa0890230 MtrunA17_Chr3g0098961 59.589 146 59 0 2 147 6 151 1.29e-58 191
Msa0890230 MtrunA17_Chr3g0141851 33.333 387 232 12 17 390 20 393 1.22e-54 189
Msa0890230 MtrunA17_Chr1g0165731 72.897 107 29 0 162 268 2 108 2.45e-54 177
Msa0890230 MtrunA17_Chr1g0165721 72.650 117 32 0 345 461 1 117 3.13e-52 172
Msa0890230 MtrunA17_Chr7g0273701 51.807 166 77 3 285 449 1 164 3.03e-51 171
Msa0890230 MtrunA17_Chr2g0306321 30.848 389 253 10 17 390 26 413 2.91e-50 177
Msa0890230 MtrunA17_Chr2g0334001 29.017 417 250 11 5 395 1 397 1.56e-48 172
Msa0890230 MtrunA17_Chr4g0027071 28.571 392 252 10 16 387 19 402 8.71e-48 171
Msa0890230 MtrunA17_Chr4g0001861 30.446 381 223 9 41 395 34 398 1.00e-47 169
Msa0890230 MtrunA17_Chr8g0371821 28.406 433 261 10 13 415 7 420 4.01e-47 168
Msa0890230 MtrunA17_Chr3g0113821 28.604 444 286 13 9 435 5 434 6.02e-44 159
Msa0890230 MtrunA17_Chr3g0087401 26.747 415 250 12 17 392 10 409 5.32e-40 149
Msa0890230 MtrunA17_Chr7g0253501 29.524 420 238 15 16 390 9 415 7.31e-40 149
Msa0890230 MtrunA17_Chr7g0253531 29.286 420 239 15 16 390 9 415 4.80e-39 147
Msa0890230 MtrunA17_Chr7g0252731 28.389 391 244 11 8 388 16 380 5.23e-39 146
Msa0890230 MtrunA17_Chr7g0270771 31.757 296 158 9 5 286 1 266 1.72e-38 140
Msa0890230 MtrunA17_Chr6g0470591 26.650 409 269 12 3 387 5 406 4.37e-37 141
Msa0890230 MtrunA17_Chr2g0283361 29.381 388 260 10 9 387 2 384 1.23e-36 140
Msa0890230 MtrunA17_Chr3g0106691 27.569 399 263 12 9 387 56 448 2.52e-36 140
Msa0890230 MtrunA17_Chr4g0072041 27.363 402 257 11 17 390 22 416 1.33e-34 134
Msa0890230 MtrunA17_Chr3g0106721 27.649 387 256 11 7 378 8 385 4.16e-34 133
Msa0890230 MtrunA17_Chr7g0253541 27.033 455 280 18 17 434 12 451 4.74e-33 130
Msa0890230 MtrunA17_Chr4g0054081 27.320 388 244 11 35 392 34 413 1.90e-31 125
Msa0890230 MtrunA17_Chr7g0235531 26.250 400 260 12 8 384 3 390 1.92e-31 125
Msa0890230 MtrunA17_Chr3g0106661 29.397 398 249 13 16 387 17 408 2.82e-31 125
Msa0890230 MtrunA17_Chr2g0311401 27.500 280 163 7 142 395 2 267 4.26e-28 113
Msa0890230 MtrunA17_Chr3g0106761 27.566 341 213 11 69 387 19 347 5.72e-27 112
Msa0890230 MtrunA17_Chr3g0106711 31.489 235 134 6 7 216 8 240 2.33e-26 107
Msa0890230 MtrunA17_Chr3g0106741 28.012 332 205 12 78 387 59 378 8.03e-26 109
Msa0890230 MtrunA17_Chr7g0273691 48.889 90 44 1 165 252 1 90 1.48e-23 94.7
Msa0890230 MtrunA17_Chr5g0442701 25.296 423 260 16 7 389 8 414 3.25e-23 102
Msa0890230 MtrunA17_Chr4g0053061 25.227 440 267 19 24 432 59 467 5.98e-23 101
Msa0890230 MtrunA17_Chr8g0374911 25.000 440 268 19 24 432 52 460 1.66e-22 99.8
Msa0890230 MtrunA17_Chr7g0273681 75.510 49 12 0 91 139 1 49 2.14e-22 90.1
Msa0890230 MtrunA17_Chr5g0442691 24.762 420 266 15 7 389 31 437 2.45e-22 99.8
Msa0890230 MtrunA17_Chr4g0010121 24.027 437 272 17 23 432 70 473 2.51e-22 99.4
Msa0890230 MtrunA17_Chr4g0004691 30.357 168 111 2 17 184 12 173 5.14e-22 93.2
Msa0890230 MtrunA17_Chr5g0438701 24.029 412 263 14 15 397 9 399 6.84e-22 97.8
Msa0890230 MtrunA17_Chr1g0199561 22.145 429 268 15 15 405 9 409 1.14e-21 97.1
Msa0890230 MtrunA17_Chr3g0125001 26.471 442 259 22 23 437 25 427 2.01e-21 96.3
Msa0890230 MtrunA17_Chr4g0010311 25.404 433 273 20 23 432 25 430 2.20e-20 93.2
Msa0890230 MtrunA17_Chr4g0010361 25.231 432 272 20 23 430 25 429 3.31e-20 92.8
Msa0890230 MtrunA17_Chr8g0374641 26.037 434 268 19 23 432 30 434 4.53e-20 92.4
Msa0890230 MtrunA17_Chr3g0134071 27.147 361 225 16 64 398 70 418 6.69e-20 92.0
Msa0890230 MtrunA17_Chr8g0354371 25.587 383 245 14 23 387 31 391 1.22e-19 90.9
Msa0890230 MtrunA17_Chr3g0095731 25.243 412 242 17 48 422 47 429 1.48e-19 90.9
Msa0890230 MtrunA17_Chr4g0010331 24.041 391 263 13 23 397 25 397 2.15e-19 90.1
Msa0890230 MtrunA17_Chr7g0224131 24.709 429 278 17 23 432 25 427 3.40e-19 89.7
Msa0890230 MtrunA17_Chr3g0095721 23.892 406 269 13 64 441 72 465 4.43e-19 89.7
Msa0890230 MtrunA17_Chr3g0134041 24.932 365 230 14 61 398 63 410 5.68e-19 89.0
Msa0890230 MtrunA17_Chr8g0376901 23.308 399 257 12 15 388 9 383 7.51e-19 88.6
Msa0890230 MtrunA17_Chr5g0442721 24.661 369 222 13 61 389 64 416 1.03e-18 88.6
Msa0890230 MtrunA17_Chr3g0134091 26.500 400 251 15 23 397 30 411 1.08e-18 88.2
Msa0890230 MtrunA17_Chr3g0134061 24.745 392 255 17 36 398 42 422 1.13e-18 88.2
Msa0890230 MtrunA17_Chr8g0376891 24.297 391 263 14 15 388 9 383 1.54e-18 87.8
Msa0890230 MtrunA17_Chr3g0134121 26.904 394 256 17 24 397 31 412 4.23e-18 86.7
Msa0890230 MtrunA17_Chr4g0053111 23.691 401 264 15 23 398 28 411 9.13e-18 85.5
Msa0890230 MtrunA17_Chr5g0408911 25.553 407 247 17 22 397 33 414 2.06e-17 84.3
Msa0890230 MtrunA17_Chr3g0123061 22.418 397 249 15 15 390 11 369 1.11e-16 82.0
Msa0890230 MtrunA17_Chr8g0376911 25.448 279 174 10 15 278 9 268 1.52e-15 78.6
Msa0890230 MtrunA17_Chr6g0471981 49.315 73 29 1 100 172 1 65 2.09e-15 70.9
Msa0890230 MtrunA17_Chr7g0252761 30.323 155 104 3 8 161 15 166 7.96e-15 72.4
Msa0890230 MtrunA17_Chr5g0414431 65.385 52 13 1 55 106 6 52 8.64e-15 68.6
Msa0890230 MtrunA17_Chr2g0311411 32.432 148 94 4 5 152 1 142 1.81e-14 70.9
Msa0890230 MtrunA17_Chr7g0252771 25.822 213 138 6 187 388 2 205 2.99e-14 72.8
Msa0890230 MtrunA17_Chr4g0010351 25.249 301 196 10 23 309 25 310 6.45e-14 73.2
Msa0890230 MtrunA17_Chr3g0106631 27.338 139 98 2 147 282 2 140 9.39e-14 68.9
Msa0890230 MtrunA17_Chr3g0097841 27.215 158 96 4 251 392 48 202 3.26e-13 69.3
Msa0890230 MtrunA17_Chr7g0273671 60.976 41 16 0 2 42 3 43 6.89e-12 60.1
Msa0890230 MtrunA17_Chr7g0224121 30.496 141 86 6 51 184 46 181 8.86e-12 64.3
Msa0890230 MtrunA17_Chr4g0004701 26.020 196 118 7 254 430 45 232 3.02e-11 63.5
Msa0890230 MtrunA17_Chr2g0278481 27.528 178 115 7 16 190 24 190 5.09e-11 64.7
Msa0890230 MtrunA17_Chr3g0097851 29.897 97 67 1 251 347 19 114 6.12e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890230 AT5G17540.1 53.333 465 209 6 1 461 1 461 2.21e-173 494
Msa0890230 AT3G03480.1 52.941 442 195 8 5 440 15 449 1.51e-156 452
Msa0890230 AT5G41040.2 35.533 394 234 11 7 390 15 398 1.16e-77 249
Msa0890230 AT5G41040.1 35.533 394 234 11 7 390 31 414 1.38e-77 249
Msa0890230 AT5G63560.1 33.753 397 243 10 1 390 1 384 1.96e-74 240
Msa0890230 AT3G48720.1 32.152 395 256 9 1 390 1 388 3.51e-72 234
Msa0890230 AT1G27620.1 29.322 457 286 13 10 455 10 440 8.88e-54 186
Msa0890230 AT1G03390.1 31.552 393 245 12 16 390 24 410 6.72e-48 171
Msa0890230 AT3G62160.1 31.298 393 234 12 5 384 1 370 6.56e-46 165
Msa0890230 AT5G48930.1 29.040 396 261 9 8 390 2 390 7.72e-46 165
Msa0890230 AT2G40230.1 31.407 398 245 13 9 390 5 390 3.22e-45 163
Msa0890230 AT5G57840.1 28.193 415 259 12 8 397 2 402 2.98e-44 161
Msa0890230 AT1G28680.1 28.158 380 262 10 16 387 11 387 1.29e-43 159
Msa0890230 AT1G65450.1 31.407 398 248 11 7 389 16 403 1.51e-43 159
Msa0890230 AT1G28680.2 28.818 347 229 10 16 351 11 350 1.48e-40 150
Msa0890230 AT2G19070.1 27.861 402 256 11 17 390 12 407 4.66e-39 147
Msa0890230 AT3G47170.1 26.033 484 281 17 7 440 10 466 1.18e-36 140
Msa0890230 AT5G07080.1 28.954 411 239 14 9 387 14 403 3.02e-36 139
Msa0890230 AT2G25150.1 27.475 404 240 13 15 387 19 400 6.37e-31 124
Msa0890230 AT2G23510.1 28.087 413 252 16 1 387 5 398 9.56e-31 124
Msa0890230 AT1G32910.1 24.129 402 270 14 62 441 63 451 9.49e-24 103
Msa0890230 AT1G78990.1 24.713 348 230 10 62 390 65 399 1.53e-23 103
Msa0890230 AT5G38130.1 25.373 402 250 15 23 401 48 422 1.32e-21 97.4
Msa0890230 AT1G31490.1 23.645 406 266 15 6 389 3 386 2.39e-21 96.7
Msa0890230 AT3G50280.1 24.051 395 263 15 64 437 59 437 6.06e-21 95.5
Msa0890230 AT3G26040.1 24.129 402 254 15 15 391 9 384 8.47e-21 95.1
Msa0890230 AT5G42830.1 26.211 351 220 9 19 350 27 357 4.12e-20 92.8
Msa0890230 AT1G24420.2 24.745 392 255 14 15 388 11 380 1.05e-18 88.6
Msa0890230 AT1G24420.1 24.745 392 255 14 15 388 11 380 1.05e-18 88.6
Msa0890230 AT1G65450.3 29.167 240 150 7 162 388 6 238 1.98e-18 85.9
Msa0890230 AT5G23940.1 24.942 433 281 15 41 440 28 449 1.99e-18 88.2
Msa0890230 AT5G07860.1 25.700 393 252 11 64 438 72 442 5.50e-18 86.7
Msa0890230 AT4G15390.1 22.573 412 270 15 3 388 2 390 1.77e-17 85.1
Msa0890230 AT4G15390.2 22.573 412 270 15 3 388 2 390 1.77e-17 85.1
Msa0890230 AT5G47980.1 24.838 463 289 21 15 449 11 442 2.40e-17 84.3
Msa0890230 AT3G50270.1 23.500 400 262 14 23 397 30 410 3.83e-17 84.0
Msa0890230 AT5G07850.1 24.044 366 239 14 64 398 70 427 2.37e-15 78.6
Msa0890230 AT1G24430.1 21.792 413 264 14 7 393 3 382 6.72e-15 77.0
Msa0890230 AT3G30280.1 23.799 437 284 19 7 419 4 415 4.77e-14 74.3
Msa0890230 AT3G50300.1 24.650 357 236 14 64 397 59 405 1.77e-13 72.8
Msa0890230 AT1G65450.2 34.694 147 91 4 7 151 16 159 2.50e-12 65.5

Find 84 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCATGCTTTCTTCTT+TGG 0.166776 6_1:-62760885 Msa0890230:CDS
TGATGTGATGATTTCGAAAT+TGG 0.204520 6_1:+62760803 None:intergenic
GGGTCTTTGCCTTCCATAAT+TGG 0.207524 6_1:+62765568 None:intergenic
CACTCCATTGTTGCTTATTC+AGG 0.213746 6_1:-62765308 Msa0890230:intron
GCGTTCAATGGCAGATTTAT+TGG 0.228223 6_1:-62760541 Msa0890230:CDS
CAACATTAACTCGCCTACTA+TGG 0.253148 6_1:-62760250 Msa0890230:CDS
TTTGATGGACTTATCAATTC+AGG 0.276801 6_1:+62765685 None:intergenic
TCATCCTCCATTTCCATGCT+TGG 0.295990 6_1:-62765374 Msa0890230:CDS
GGATTTAGAGATGTTGATTT+TGG 0.298021 6_1:-62760453 Msa0890230:CDS
TTACAACTATAATCCAATTA+TGG 0.298751 6_1:-62765581 Msa0890230:CDS
TTTGCTTTGTTGTCAGGTTC+TGG 0.302024 6_1:+62760930 None:intergenic
CATCCTCCATTTCCATGCTT+GGG 0.309107 6_1:-62765373 Msa0890230:CDS
TCACTTTGAATAACAGAGAT+TGG 0.319779 6_1:+62765719 None:intergenic
GATGTTACTCTTAAACAATT+TGG 0.341792 6_1:-62765406 Msa0890230:CDS
AATGTGTTTGCTTTGTTGTC+AGG 0.360041 6_1:+62760924 None:intergenic
GAGCTTATCTATGATGTTCC+TGG 0.364126 6_1:-62765349 Msa0890230:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 6_1:-62760343 Msa0890230:CDS
GGCAGATTTATTGGCAATCA+AGG 0.392228 6_1:-62760532 Msa0890230:CDS
AGCTCACCCAAGCATGGAAA+TGG 0.405012 6_1:+62765367 None:intergenic
AAACTTATGGTTGATTGTAC+TGG 0.411896 6_1:-62765460 Msa0890230:CDS
CTTGTACCAAATGGTTACTA+TGG 0.428082 6_1:-62760681 Msa0890230:CDS
AGGTCCAGGCAGGAAACTTA+TGG 0.437029 6_1:-62765473 Msa0890230:CDS
CACTTTGAATAACAGAGATT+GGG 0.439909 6_1:+62765720 None:intergenic
TGCTTTAGCAGAAATATCTC+AGG 0.441961 6_1:-62761048 Msa0890230:CDS
CGAGAGGTTGGTTAAAGAGT+TGG 0.447717 6_1:-62760289 Msa0890230:CDS
AATCCAGTGCATACGTCAAC+GGG 0.450348 6_1:+62760604 None:intergenic
AAATGAAACCTCTACATTTG+AGG 0.462956 6_1:+62761129 None:intergenic
GTTAACCTACTTGTACCAAA+TGG 0.467873 6_1:-62760690 Msa0890230:CDS
CATGAAAGCGTAAAGATTGT+TGG 0.467969 6_1:+62765620 None:intergenic
CACCACACGGGTGAGATAGA+AGG 0.468435 6_1:+62761014 None:intergenic
CTGATCCATCAGTCATTGTA+TGG 0.471310 6_1:+62761090 None:intergenic
CATTGAACGCATGTACTCTT+CGG 0.471418 6_1:+62760554 None:intergenic
CTGTTTATGGAGGATTAGCT+AGG 0.475738 6_1:-62760419 Msa0890230:CDS
GCGTTACCATAGTAACCATT+TGG 0.486089 6_1:+62760675 None:intergenic
TCCATTGGCAGGTAGGTTGA+AGG 0.489488 6_1:-62765497 Msa0890230:CDS
GTGTCTGATGTTACACGTGC+TGG 0.496612 6_1:-62760474 Msa0890230:CDS
AACATTAACTCGCCTACTAT+GGG 0.506408 6_1:-62760249 Msa0890230:CDS
AGAACGAATTGCGGCTACCT+CGG 0.515692 6_1:+62760857 None:intergenic
CGATGAGTACACGTCACTCT+TGG 0.519362 6_1:+62760963 None:intergenic
CCTACAGTTGTAATTGCAGT+AGG 0.519368 6_1:+62760642 None:intergenic
CACATTTAACTTAGATGACA+TGG 0.519537 6_1:-62760907 Msa0890230:CDS
AACCTCTCGATGACTTGAGT+TGG 0.522512 6_1:+62760303 None:intergenic
TTTATTATCCATTGGCAGGT+AGG 0.523223 6_1:-62765504 Msa0890230:CDS
GCAGGAGATGGTACTAATCC+TGG 0.525434 6_1:-62760396 Msa0890230:CDS
CGAATTGCGGCTACCTCGGT+TGG 0.525664 6_1:+62760861 None:intergenic
AACTCAAGTCATCGAGAGGT+TGG 0.529894 6_1:-62760301 Msa0890230:CDS
TATGGAGGATTAGCTAGGGC+AGG 0.533606 6_1:-62760414 Msa0890230:CDS
CGAAGAGTACATGCGTTCAA+TGG 0.533690 6_1:-62760553 Msa0890230:CDS
TAGTTGTAAAATTGTATCAA+AGG 0.541244 6_1:+62765595 None:intergenic
AAACCCGTTGACGTATGCAC+TGG 0.551116 6_1:-62760607 Msa0890230:CDS
TAGAATTTCTCTGCACCACA+CGG 0.551792 6_1:+62761001 None:intergenic
CTCTGTTATTCAAAGTGAAG+AGG 0.555419 6_1:-62765714 Msa0890230:CDS
GCAGAGAAATTCTAAGCGCA+AGG 0.556633 6_1:-62760992 Msa0890230:CDS
TTCAACCATACAATGACTGA+TGG 0.556932 6_1:-62761095 Msa0890230:CDS
AACTATAATCCAATTATGGA+AGG 0.560081 6_1:-62765577 Msa0890230:CDS
CATACAATGACTGATGGATC+AGG 0.560751 6_1:-62761089 Msa0890230:CDS
CCTACTGCAATTACAACTGT+AGG 0.564434 6_1:-62760642 Msa0890230:CDS
AAATCCAGTGCATACGTCAA+CGG 0.566201 6_1:+62760603 None:intergenic
GGTAGGTTGAAGGAAGGTCC+AGG 0.568595 6_1:-62765487 Msa0890230:CDS
GGTTGAAGGAAGGTCCAGGC+AGG 0.572980 6_1:-62765483 Msa0890230:CDS
TCCTTCAACCTACCTGCCAA+TGG 0.578153 6_1:+62765496 None:intergenic
TAGATAAGCTCACCCAAGCA+TGG 0.578422 6_1:+62765361 None:intergenic
GCAGATTTATTGGCAATCAA+GGG 0.583481 6_1:-62760531 Msa0890230:CDS
TCAACCATAAGTTTCCTGCC+TGG 0.587825 6_1:+62765469 None:intergenic
TTCCAACTCAAGTCATCGAG+AGG 0.589195 6_1:-62760305 Msa0890230:CDS
TCACCCAAGCATGGAAATGG+AGG 0.596066 6_1:+62765370 None:intergenic
GGATTAGCTAGGGCAGGAGA+TGG 0.598327 6_1:-62760408 Msa0890230:CDS
AGTACCTGAATAAGCAACAA+TGG 0.598590 6_1:+62765304 None:intergenic
AGTAACCATTTGGTACAAGT+AGG 0.600048 6_1:+62760685 None:intergenic
TGTTTATGGAGGATTAGCTA+GGG 0.604138 6_1:-62760418 Msa0890230:CDS
GCATTCGCTGTAGTAAAATG+AGG 0.605286 6_1:+62760504 None:intergenic
ATGGTTGATTGTACTGGAGA+AGG 0.624573 6_1:-62765454 Msa0890230:CDS
ATATAAATGGTAGAAATACC+AGG 0.634551 6_1:+62760378 None:intergenic
AGAATTTCTCTGCACCACAC+GGG 0.634985 6_1:+62761002 None:intergenic
CAGAGAAATTCTAAGCGCAA+GGG 0.649135 6_1:-62760991 Msa0890230:CDS
TGGAAGTAGAGAACGAATTG+CGG 0.652589 6_1:+62760848 None:intergenic
TTGGACCAAAGAAGAAAGCA+TGG 0.654532 6_1:+62760880 None:intergenic
TTGGCAGGTAGGTTGAAGGA+AGG 0.663121 6_1:-62765493 Msa0890230:CDS
ATAACACGCCTCAAATGTAG+AGG 0.664855 6_1:-62761137 Msa0890230:CDS
GCTTTAGCAGAAATATCTCA+GGG 0.672367 6_1:-62761047 Msa0890230:CDS
TTTAGCACATCTGAAGAACC+AGG 0.677737 6_1:+62765331 None:intergenic
TTTCTTCTTTGGTCCAACCG+AGG 0.682343 6_1:-62760874 Msa0890230:CDS
AACCTTCTATCTCACCCGTG+TGG 0.728430 6_1:-62761016 Msa0890230:CDS
GACCAAAGAAGAAAGCATGG+TGG 0.740416 6_1:+62760883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACTAAAAATAAACTTAA+GGG + chr6_1:62760758-62760777 None:intergenic 10.0%
!! ATAAACTTAAAATACTAAAA+CGG - chr6_1:62761732-62761751 Msa0890230:intron 10.0%
!!! TTTCTAATTTTTTTATTAAG+AGG - chr6_1:62762074-62762093 Msa0890230:intron 10.0%
!! AAAAAAAATAAAAAATTGTG+TGG + chr6_1:62764258-62764277 None:intergenic 10.0%
!!! AAATTTTTAACATATCTTAT+AGG + chr6_1:62764440-62764459 None:intergenic 10.0%
!! TTAATATAACTATAATTAAC+AGG - chr6_1:62764517-62764536 Msa0890230:intron 10.0%
!! TAATATAACTATAATTAACA+GGG - chr6_1:62764518-62764537 Msa0890230:intron 10.0%
!! AATTACAAAAATTAGATAAA+CGG + chr6_1:62764593-62764612 None:intergenic 10.0%
!!! ATTTTTAAAAGGTATATAAA+TGG + chr6_1:62765574-62765593 None:intergenic 10.0%
!! CAATACTAAAAATAAACTTA+AGG + chr6_1:62760759-62760778 None:intergenic 15.0%
!!! TTAATTTTCGTTACAATTTT+TGG - chr6_1:62760823-62760842 Msa0890230:CDS 15.0%
!!! CGTTTTTTTATTAAACTTAA+CGG + chr6_1:62760855-62760874 None:intergenic 15.0%
!! AAGTTTAATAAAAAAACGTT+AGG - chr6_1:62760857-62760876 Msa0890230:CDS 15.0%
!!! TTGATTTGTGTTTTTTTATT+TGG + chr6_1:62761305-62761324 None:intergenic 15.0%
!!! AACAAAAACAACTTTTTATT+TGG + chr6_1:62761529-62761548 None:intergenic 15.0%
!!! CTTAATTTCTTTTCTTTTTT+GGG + chr6_1:62761557-62761576 None:intergenic 15.0%
!!! TCTTAATTTCTTTTCTTTTT+TGG + chr6_1:62761558-62761577 None:intergenic 15.0%
!! AAAATTATGAAATTTGATGA+AGG - chr6_1:62761608-62761627 Msa0890230:intron 15.0%
!! TTTGAAAATTCATAAGTAAT+CGG - chr6_1:62761884-62761903 Msa0890230:intron 15.0%
!! CTTAATTTCATATAACAATT+TGG + chr6_1:62761949-62761968 None:intergenic 15.0%
!! TCAAATAAATGTAAAATCTA+AGG - chr6_1:62762101-62762120 Msa0890230:intron 15.0%
!! CAAATAAATGTAAAATCTAA+GGG - chr6_1:62762102-62762121 Msa0890230:intron 15.0%
!!! ATATATCTTTAAAATGATTC+AGG + chr6_1:62763733-62763752 None:intergenic 15.0%
!!! ATGTAGGAATTTAAAATTAT+GGG + chr6_1:62763950-62763969 None:intergenic 15.0%
!!! AATGTAGGAATTTAAAATTA+TGG + chr6_1:62763951-62763970 None:intergenic 15.0%
!! TAGTTGTAAAATTGTATCAA+AGG + chr6_1:62760344-62760363 None:intergenic 20.0%
!! TTACAACTATAATCCAATTA+TGG - chr6_1:62760355-62760374 Msa0890230:CDS 20.0%
!!! TTCTTATGATCTTTTTATCT+TGG - chr6_1:62760714-62760733 Msa0890230:CDS 20.0%
!!! GTTTATTTTTAGTATTGCTT+CGG - chr6_1:62760762-62760781 Msa0890230:CDS 20.0%
!!! ACAGACTTTTTTTTACTTAA+GGG + chr6_1:62760789-62760808 None:intergenic 20.0%
!!! AACAGACTTTTTTTTACTTA+AGG + chr6_1:62760790-62760809 None:intergenic 20.0%
!!! TTTTATTAAACTTAACGGAA+GGG + chr6_1:62760850-62760869 None:intergenic 20.0%
!!! TTTTTATTAAACTTAACGGA+AGG + chr6_1:62760851-62760870 None:intergenic 20.0%
!! TTAATGGAGAAATTGTTTAT+GGG + chr6_1:62761161-62761180 None:intergenic 20.0%
!! TTTAATGGAGAAATTGTTTA+TGG + chr6_1:62761162-62761181 None:intergenic 20.0%
!!! ATTTCTAAAAGTACAAGATT+TGG - chr6_1:62761358-62761377 Msa0890230:intron 20.0%
!! CATCTTTGAATTAAAACTAA+CGG - chr6_1:62761687-62761706 Msa0890230:intron 20.0%
!! TGATACTAAGTAAAAACTTA+AGG - chr6_1:62761781-62761800 Msa0890230:intron 20.0%
!! GATACTAAGTAAAAACTTAA+GGG - chr6_1:62761782-62761801 Msa0890230:intron 20.0%
!! TGATTATAGTGAAAATCATT+TGG + chr6_1:62762615-62762634 None:intergenic 20.0%
!! TTTCTTCTTTGATTAAAGAA+TGG + chr6_1:62762681-62762700 None:intergenic 20.0%
!!! TATTTAATTTGACAAAGCAA+AGG - chr6_1:62762859-62762878 Msa0890230:intron 20.0%
!!! ATTTAATTTGACAAAGCAAA+GGG - chr6_1:62762860-62762879 Msa0890230:intron 20.0%
!! TAAACAAATAAAGGAATTCA+AGG + chr6_1:62763092-62763111 None:intergenic 20.0%
!! TAACTTACTACTTTATTACT+TGG + chr6_1:62763309-62763328 None:intergenic 20.0%
!! AATTTCTTGAATCCAATATA+AGG + chr6_1:62763555-62763574 None:intergenic 20.0%
!! TCTTCGTCAAAATTATAATA+TGG + chr6_1:62764056-62764075 None:intergenic 20.0%
!!! TATTTTTTTTTTATCTTGGG+TGG - chr6_1:62764268-62764287 Msa0890230:intron 20.0%
!!! AAAAATCTTTGTCATTTTGA+AGG + chr6_1:62764413-62764432 None:intergenic 20.0%
!!! ACAAATCTATTTGATGATTA+AGG + chr6_1:62764463-62764482 None:intergenic 20.0%
!!! AAATCATCACATCATATTTT+TGG - chr6_1:62765142-62765161 Msa0890230:intron 20.0%
!!! ATACCTTTTAAAAATGCTAA+AGG - chr6_1:62765579-62765598 Msa0890230:CDS 20.0%
! AACTATAATCCAATTATGGA+AGG - chr6_1:62760359-62760378 Msa0890230:CDS 25.0%
!! CTTTTCTAATAACATCAACA+GGG + chr6_1:62760391-62760410 None:intergenic 25.0%
! GATGTTACTCTTAAACAATT+TGG - chr6_1:62760530-62760549 Msa0890230:CDS 25.0%
!! AATTATGGGTTTCCTTTTAT+GGG + chr6_1:62761090-62761109 None:intergenic 25.0%
!! AAATTATGGGTTTCCTTTTA+TGG + chr6_1:62761091-62761110 None:intergenic 25.0%
!! GTTGTTGTTGCATAAATTAT+GGG + chr6_1:62761104-62761123 None:intergenic 25.0%
!! TGTTGTTGTTGCATAAATTA+TGG + chr6_1:62761105-62761124 None:intergenic 25.0%
! TTATGCAACAACAACAATTT+CGG - chr6_1:62761109-62761128 Msa0890230:CDS 25.0%
!!! GAAAGGGATGTTTTTTTTAA+TGG + chr6_1:62761177-62761196 None:intergenic 25.0%
!! GCTTATTGTTTGAAATGAAA+GGG + chr6_1:62761193-62761212 None:intergenic 25.0%
! TTCTTCATATTTACTAACAG+TGG - chr6_1:62761256-62761275 Msa0890230:intron 25.0%
! TCTTCATATTTACTAACAGT+GGG - chr6_1:62761257-62761276 Msa0890230:intron 25.0%
! AAAACACAAATCAAAACACA+AGG - chr6_1:62761311-62761330 Msa0890230:intron 25.0%
! AAACACAAATCAAAACACAA+GGG - chr6_1:62761312-62761331 Msa0890230:intron 25.0%
!!! AACGGACTTTTTTTTACTTA+AGG - chr6_1:62761750-62761769 Msa0890230:intron 25.0%
!!! ACGGACTTTTTTTTACTTAA+GGG - chr6_1:62761751-62761770 Msa0890230:intron 25.0%
!! GTTTTTACTTAGTATCACTT+TGG + chr6_1:62761778-62761797 None:intergenic 25.0%
! ACTATATATCGAAAGATTGA+AGG + chr6_1:62761826-62761845 None:intergenic 25.0%
!! AGTTTTTACTCAGGATATAT+AGG + chr6_1:62761983-62762002 None:intergenic 25.0%
!! AAGATGTAATTTTGCCAATT+TGG - chr6_1:62762207-62762226 Msa0890230:intron 25.0%
! AAGATTACAAGTTCTTCTTA+GGG - chr6_1:62762383-62762402 Msa0890230:intron 25.0%
! TCTTTAATTAAGCTTCTCAA+GGG + chr6_1:62762977-62762996 None:intergenic 25.0%
! TCAAGTGCATAAACAAATAA+AGG + chr6_1:62763101-62763120 None:intergenic 25.0%
! CTTTATTACTTGGTACAATT+TGG + chr6_1:62763299-62763318 None:intergenic 25.0%
! ATTTATAACTCGCCTTATAT+TGG - chr6_1:62763540-62763559 Msa0890230:intron 25.0%
! AATTAGAACATAACTCGTTA+AGG - chr6_1:62763571-62763590 Msa0890230:intron 25.0%
! TTACAATTATGTCGAGTTTA+TGG + chr6_1:62763975-62763994 None:intergenic 25.0%
! TTGTAACAAACAATACACTT+TGG - chr6_1:62763989-62764008 Msa0890230:intron 25.0%
! TGTAACAAACAATACACTTT+GGG - chr6_1:62763990-62764009 Msa0890230:intron 25.0%
! AGATAATATTCATGTGTTGT+TGG + chr6_1:62764140-62764159 None:intergenic 25.0%
!!! TAAGTGGAATTTAATTTGGA+CGG + chr6_1:62764302-62764321 None:intergenic 25.0%
! AATAATTAATGAGCGAATGA+AGG + chr6_1:62764746-62764765 None:intergenic 25.0%
!!! AATTGGAGTATTTTTGTTGT+TGG + chr6_1:62765119-62765138 None:intergenic 25.0%
! ATATAAATGGTAGAAATACC+AGG + chr6_1:62765561-62765580 None:intergenic 25.0%
!! TCTCCTTTAGCATTTTTAAA+AGG + chr6_1:62765585-62765604 None:intergenic 25.0%
!!! TTTTAAAAATGCTAAAGGAG+AGG - chr6_1:62765584-62765603 Msa0890230:CDS 25.0%
CACTTTGAATAACAGAGATT+GGG + chr6_1:62760219-62760238 None:intergenic 30.0%
TCACTTTGAATAACAGAGAT+TGG + chr6_1:62760220-62760239 None:intergenic 30.0%
!! TTTGATGGACTTATCAATTC+AGG + chr6_1:62760254-62760273 None:intergenic 30.0%
!!! AGTTTTATTTCATGAGGAGT+GGG + chr6_1:62760278-62760297 None:intergenic 30.0%
!!! TAGTTTTATTTCATGAGGAG+TGG + chr6_1:62760279-62760298 None:intergenic 30.0%
!!! GAGAGTAGTTTTATTTCATG+AGG + chr6_1:62760284-62760303 None:intergenic 30.0%
! GCTTTTCTAATAACATCAAC+AGG + chr6_1:62760392-62760411 None:intergenic 30.0%
!! GCTTGTGTTTTATTATCCAT+TGG - chr6_1:62760424-62760443 Msa0890230:CDS 30.0%
AAACTTATGGTTGATTGTAC+TGG - chr6_1:62760476-62760495 Msa0890230:CDS 30.0%
ATCAATTAGCAACAACAACT+TGG - chr6_1:62761004-62761023 Msa0890230:CDS 30.0%
TGAGAGTGAAAAGGATTTAT+GGG + chr6_1:62761059-62761078 None:intergenic 30.0%
! GGCTTATTGTTTGAAATGAA+AGG + chr6_1:62761194-62761213 None:intergenic 30.0%
! TTTGAAGATTTTGCTTGATG+TGG + chr6_1:62761215-62761234 None:intergenic 30.0%
AAATTTGATGAAGGTGAATG+AGG - chr6_1:62761617-62761636 Msa0890230:intron 30.0%
GGAAATGACCAAAATGTAAA+CGG - chr6_1:62761708-62761727 Msa0890230:intron 30.0%
GAAATGACCAAAATGTAAAC+GGG - chr6_1:62761709-62761728 Msa0890230:intron 30.0%
! AGTTTATCCCGTTTACATTT+TGG + chr6_1:62761719-62761738 None:intergenic 30.0%
! TTGCTTCATTCTAGAAAACA+CGG - chr6_1:62762042-62762061 Msa0890230:intron 30.0%
! CATGAATCAAGTTTTCTTAC+CGG - chr6_1:62762333-62762352 Msa0890230:intron 30.0%
CAAGATTACAAGTTCTTCTT+AGG - chr6_1:62762382-62762401 Msa0890230:intron 30.0%
! AAAATCATTTGGAAGTGCAA+GGG + chr6_1:62762604-62762623 None:intergenic 30.0%
GTCTTTAATTAAGCTTCTCA+AGG + chr6_1:62762978-62762997 None:intergenic 30.0%
TCTTTCAACTCAGTAATTAG+TGG - chr6_1:62763348-62763367 Msa0890230:intron 30.0%
! AAAGAATTTGAAGCTGTTGA+AGG - chr6_1:62763398-62763417 Msa0890230:intron 30.0%
! AAGAATTTGAAGCTGTTGAA+GGG - chr6_1:62763399-62763418 Msa0890230:intron 30.0%
CATATGTTTAACGACGATTA+TGG - chr6_1:62763464-62763483 Msa0890230:intron 30.0%
TAATTTCCATCAAAGACGAA+GGG + chr6_1:62763504-62763523 None:intergenic 30.0%
TTAATTTCCATCAAAGACGA+AGG + chr6_1:62763505-62763524 None:intergenic 30.0%
! TATTTTTCTCCTCTTTGTGA+TGG + chr6_1:62763685-62763704 None:intergenic 30.0%
TTGATGTGATGTACACTTAT+GGG + chr6_1:62764095-62764114 None:intergenic 30.0%
CAGGTAAGTGGAATTTAATT+TGG + chr6_1:62764306-62764325 None:intergenic 30.0%
CAAATTAAATTCCACTTACC+TGG - chr6_1:62764304-62764323 Msa0890230:intron 30.0%
TAACTATAATTAACAGGGCA+AGG - chr6_1:62764523-62764542 Msa0890230:intron 30.0%
AAATGAAACCTCTACATTTG+AGG + chr6_1:62764810-62764829 None:intergenic 30.0%
! CACATTTAACTTAGATGACA+TGG - chr6_1:62765029-62765048 Msa0890230:intron 30.0%
TGATGTGATGATTTCGAAAT+TGG + chr6_1:62765136-62765155 None:intergenic 30.0%
!!! GGATTTAGAGATGTTGATTT+TGG - chr6_1:62765483-62765502 Msa0890230:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - chr6_1:62765487-62765506 Msa0890230:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - chr6_1:62765488-62765507 Msa0890230:CDS 30.0%
!! ACTTGAGTTGGAAAAAAAAC+TGG + chr6_1:62765624-62765643 None:intergenic 30.0%
CTCTGTTATTCAAAGTGAAG+AGG - chr6_1:62760222-62760241 Msa0890230:CDS 35.0%
! CATGAAAGCGTAAAGATTGT+TGG + chr6_1:62760319-62760338 None:intergenic 35.0%
!! GTGTTTTATTATCCATTGGC+AGG - chr6_1:62760428-62760447 Msa0890230:CDS 35.0%
TTTATTATCCATTGGCAGGT+AGG - chr6_1:62760432-62760451 Msa0890230:CDS 35.0%
AGTACCTGAATAAGCAACAA+TGG + chr6_1:62760635-62760654 None:intergenic 35.0%
TTCTAATGACACGTGTACAA+CGG + chr6_1:62760903-62760922 None:intergenic 35.0%
! GTATGAGATGATGATGATGA+TGG + chr6_1:62761030-62761049 None:intergenic 35.0%
CTGAGAGTGAAAAGGATTTA+TGG + chr6_1:62761060-62761079 None:intergenic 35.0%
! CATAAATCCTTTTCACTCTC+AGG - chr6_1:62761058-62761077 Msa0890230:CDS 35.0%
! GTTATTTCCTGAGAGTGAAA+AGG + chr6_1:62761068-62761087 None:intergenic 35.0%
CTCAGGAAATAACCCATAAA+AGG - chr6_1:62761075-62761094 Msa0890230:CDS 35.0%
TCAAAACACAAGGGTTCAAA+TGG - chr6_1:62761321-62761340 Msa0890230:intron 35.0%
! TGCTTTTCTCTACCAATTTG+AGG - chr6_1:62761439-62761458 Msa0890230:intron 35.0%
TGAACAAATGCACCTCAAAT+TGG + chr6_1:62761454-62761473 None:intergenic 35.0%
! ACTTCGAGAAGTTTTTACTC+AGG + chr6_1:62761992-62762011 None:intergenic 35.0%
! TGCTTCATTCTAGAAAACAC+GGG - chr6_1:62762043-62762062 Msa0890230:intron 35.0%
TTATCGTGGGTAATCCAAAT+TGG + chr6_1:62762224-62762243 None:intergenic 35.0%
TGCGTTAAAATCGTTATCGT+GGG + chr6_1:62762237-62762256 None:intergenic 35.0%
!! GATAACGATTTTAACGCAGT+CGG - chr6_1:62762239-62762258 Msa0890230:intron 35.0%
GAGAGAGAAGAAAATTCTAC+TGG - chr6_1:62762548-62762567 Msa0890230:intron 35.0%
! AAATCATTTGGAAGTGCAAG+GGG + chr6_1:62762603-62762622 None:intergenic 35.0%
! GAAAATCATTTGGAAGTGCA+AGG + chr6_1:62762605-62762624 None:intergenic 35.0%
GTAAAATGACAGAAGTCTTG+TGG - chr6_1:62762888-62762907 Msa0890230:intron 35.0%
TCAACGACAATATCCAATTG+AGG + chr6_1:62763013-62763032 None:intergenic 35.0%
GTTTGTCGTCTTATGAAGAA+AGG + chr6_1:62763165-62763184 None:intergenic 35.0%
TTCTTCATAAGACGACAAAC+AGG - chr6_1:62763165-62763184 Msa0890230:intron 35.0%
! TGAAGCATTTGAAGTCTTGA+AGG + chr6_1:62763243-62763262 None:intergenic 35.0%
AATTTCCATCAAAGACGAAG+GGG + chr6_1:62763503-62763522 None:intergenic 35.0%
ATTCGCCCTTGCAAATTAAT+AGG - chr6_1:62763619-62763638 Msa0890230:intron 35.0%
TTCGCCCTTGCAAATTAATA+GGG - chr6_1:62763620-62763639 Msa0890230:intron 35.0%
TATTGGAATATGGTCGGTAT+TGG + chr6_1:62763757-62763776 None:intergenic 35.0%
TACACGTGCATATTGGAATA+TGG + chr6_1:62763767-62763786 None:intergenic 35.0%
ATTCCAATATGCACGTGTAT+CGG - chr6_1:62763768-62763787 Msa0890230:intron 35.0%
AGTATCTTTACGTCACAAGA+TGG + chr6_1:62763828-62763847 None:intergenic 35.0%
TGTCGAGTTTATGGAAATGT+AGG + chr6_1:62763966-62763985 None:intergenic 35.0%
CTTGATGTGATGTACACTTA+TGG + chr6_1:62764096-62764115 None:intergenic 35.0%
CTGATTGATTGTGTTCTTTG+TGG + chr6_1:62764175-62764194 None:intergenic 35.0%
AATGAACTCCTTGACTACTA+AGG - chr6_1:62764197-62764216 Msa0890230:intron 35.0%
!! GAATTTAATTTGGACGGTGA+AGG + chr6_1:62764296-62764315 None:intergenic 35.0%
!! ATTTTGAAGGCTGAAAAGCA+TGG + chr6_1:62764400-62764419 None:intergenic 35.0%
TTCAACCATACAATGACTGA+TGG - chr6_1:62764841-62764860 Msa0890230:intron 35.0%
TGCTTTAGCAGAAATATCTC+AGG - chr6_1:62764888-62764907 Msa0890230:intron 35.0%
GCTTTAGCAGAAATATCTCA+GGG - chr6_1:62764889-62764908 Msa0890230:intron 35.0%
! AATGTGTTTGCTTTGTTGTC+AGG + chr6_1:62765015-62765034 None:intergenic 35.0%
!!! TATTTTTGTTGTTGGTGAGG+TGG + chr6_1:62765111-62765130 None:intergenic 35.0%
!!! GAGTATTTTTGTTGTTGGTG+AGG + chr6_1:62765114-62765133 None:intergenic 35.0%
GTTAACCTACTTGTACCAAA+TGG - chr6_1:62765246-62765265 Msa0890230:intron 35.0%
AGTAACCATTTGGTACAAGT+AGG + chr6_1:62765254-62765273 None:intergenic 35.0%
CTTGTACCAAATGGTTACTA+TGG - chr6_1:62765255-62765274 Msa0890230:intron 35.0%
GCAGATTTATTGGCAATCAA+GGG - chr6_1:62765405-62765424 Msa0890230:CDS 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - chr6_1:62765489-62765508 Msa0890230:CDS 35.0%
!! TGTTTATGGAGGATTAGCTA+GGG - chr6_1:62765518-62765537 Msa0890230:CDS 35.0%
AAAAATGCTAAAGGAGAGGA+AGG - chr6_1:62765588-62765607 Msa0890230:CDS 35.0%
AACATTAACTCGCCTACTAT+GGG - chr6_1:62765687-62765706 Msa0890230:CDS 35.0%
! GATTTTCTATCACCCATAGT+AGG + chr6_1:62765702-62765721 None:intergenic 35.0%
! AAACACAAGCGTTTTCGCAA+GGG + chr6_1:62760414-62760433 None:intergenic 40.0%
! AAAACACAAGCGTTTTCGCA+AGG + chr6_1:62760415-62760434 None:intergenic 40.0%
ATGGTTGATTGTACTGGAGA+AGG - chr6_1:62760482-62760501 Msa0890230:CDS 40.0%
GAGCTTATCTATGATGTTCC+TGG - chr6_1:62760587-62760606 Msa0890230:CDS 40.0%
TTTAGCACATCTGAAGAACC+AGG + chr6_1:62760608-62760627 None:intergenic 40.0%
! CACTCCATTGTTGCTTATTC+AGG - chr6_1:62760628-62760647 Msa0890230:CDS 40.0%
GCATTTGTTCACTGTTGGAA+AGG - chr6_1:62761463-62761482 Msa0890230:intron 40.0%
GAAATCACCATCATCACCAA+TGG + chr6_1:62761498-62761517 None:intergenic 40.0%
CTGCGTTAAAATCGTTATCG+TGG + chr6_1:62762238-62762257 None:intergenic 40.0%
! ATCAAGTTTTCTTACCGGAG+AGG - chr6_1:62762338-62762357 Msa0890230:intron 40.0%
!! AGAGGTTCTAGATGCATACA+TGG - chr6_1:62762356-62762375 Msa0890230:intron 40.0%
!! GAGGTTCTAGATGCATACAT+GGG - chr6_1:62762357-62762376 Msa0890230:intron 40.0%
!! AGGTTCTAGATGCATACATG+GGG - chr6_1:62762358-62762377 Msa0890230:intron 40.0%
GACTATTCTCGGTTTATGAG+AGG + chr6_1:62762576-62762595 None:intergenic 40.0%
TACTTGTGCGTTTGAGCAAA+TGG + chr6_1:62762648-62762667 None:intergenic 40.0%
GTAAGTTATTCGTCTCCACA+TGG - chr6_1:62763321-62763340 Msa0890230:intron 40.0%
GAGTTGAAAGACAATCCATG+TGG + chr6_1:62763339-62763358 None:intergenic 40.0%
ACCAAACCTCATCTCGTATT+GGG + chr6_1:62763439-62763458 None:intergenic 40.0%
AACCAAACCTCATCTCGTAT+TGG + chr6_1:62763440-62763459 None:intergenic 40.0%
AAAGACGAAGGGGGAATTAA+AGG + chr6_1:62763493-62763512 None:intergenic 40.0%
ATTTCCATCAAAGACGAAGG+GGG + chr6_1:62763502-62763521 None:intergenic 40.0%
CATAACTCGTTAAGGCTTTG+TGG - chr6_1:62763579-62763598 Msa0890230:intron 40.0%
! TAATTTGCAAGGGCGAATTG+CGG + chr6_1:62763617-62763636 None:intergenic 40.0%
!! CGGACCCTATTAATTTGCAA+GGG + chr6_1:62763627-62763646 None:intergenic 40.0%
CCTTGCAAATTAATAGGGTC+CGG - chr6_1:62763625-62763644 Msa0890230:intron 40.0%
AATTAATAGGGTCCGGAAAG+AGG - chr6_1:62763632-62763651 Msa0890230:intron 40.0%
CGTGCATATTGGAATATGGT+CGG + chr6_1:62763763-62763782 None:intergenic 40.0%
AAACCGATACACGTGCATAT+TGG + chr6_1:62763774-62763793 None:intergenic 40.0%
TCGCCAATTCTCAAGGAAAT+GGG - chr6_1:62763881-62763900 Msa0890230:intron 40.0%
CAACCCATTTCCTTGAGAAT+TGG + chr6_1:62763887-62763906 None:intergenic 40.0%
AGCAACAAAATGAGACGAGT+AGG + chr6_1:62763926-62763945 None:intergenic 40.0%
AACAATACACTTTGGGCTGA+TGG - chr6_1:62763997-62764016 Msa0890230:intron 40.0%
! ATGTGTTGTTGGAATGTCCA+GGG + chr6_1:62764129-62764148 None:intergenic 40.0%
ACTTGCATATTCCAGGTAAG+TGG + chr6_1:62764318-62764337 None:intergenic 40.0%
ACTTACCTGGAATATGCAAG+TGG - chr6_1:62764317-62764336 Msa0890230:intron 40.0%
CTTACCTGGAATATGCAAGT+GGG - chr6_1:62764318-62764337 Msa0890230:intron 40.0%
AATTCCCACTTGCATATTCC+AGG + chr6_1:62764325-62764344 None:intergenic 40.0%
TTCTATACGAAGTGCGTATC+AGG + chr6_1:62764371-62764390 None:intergenic 40.0%
ATAACACGCCTCAAATGTAG+AGG - chr6_1:62764799-62764818 Msa0890230:intron 40.0%
CTGATCCATCAGTCATTGTA+TGG + chr6_1:62764849-62764868 None:intergenic 40.0%
! CATACAATGACTGATGGATC+AGG - chr6_1:62764847-62764866 Msa0890230:intron 40.0%
TAGAATTTCTCTGCACCACA+CGG + chr6_1:62764938-62764957 None:intergenic 40.0%
CAGAGAAATTCTAAGCGCAA+GGG - chr6_1:62764945-62764964 Msa0890230:intron 40.0%
! TTTGCTTTGTTGTCAGGTTC+TGG + chr6_1:62765009-62765028 None:intergenic 40.0%
TTGGACCAAAGAAGAAAGCA+TGG + chr6_1:62765059-62765078 None:intergenic 40.0%
TGGAAGTAGAGAACGAATTG+CGG + chr6_1:62765091-62765110 None:intergenic 40.0%
GCGTTACCATAGTAACCATT+TGG + chr6_1:62765264-62765283 None:intergenic 40.0%
CCTACAGTTGTAATTGCAGT+AGG + chr6_1:62765297-62765316 None:intergenic 40.0%
CCTACTGCAATTACAACTGT+AGG - chr6_1:62765294-62765313 Msa0890230:intron 40.0%
AAATCCAGTGCATACGTCAA+CGG + chr6_1:62765336-62765355 None:intergenic 40.0%
CATTGAACGCATGTACTCTT+CGG + chr6_1:62765385-62765404 None:intergenic 40.0%
GCGTTCAATGGCAGATTTAT+TGG - chr6_1:62765395-62765414 Msa0890230:CDS 40.0%
GGCAGATTTATTGGCAATCA+AGG - chr6_1:62765404-62765423 Msa0890230:CDS 40.0%
GCATTCGCTGTAGTAAAATG+AGG + chr6_1:62765435-62765454 None:intergenic 40.0%
!!! GAGATGTTGATTTTGGTTGG+GGG - chr6_1:62765490-62765509 Msa0890230:CDS 40.0%
!!! AGATGTTGATTTTGGTTGGG+GGG - chr6_1:62765491-62765510 Msa0890230:CDS 40.0%
!! CTGTTTATGGAGGATTAGCT+AGG - chr6_1:62765517-62765536 Msa0890230:CDS 40.0%
CAACATTAACTCGCCTACTA+TGG - chr6_1:62765686-62765705 Msa0890230:CDS 40.0%
!! TCATGAGGAGTGGGTTTTGA+TGG + chr6_1:62760269-62760288 None:intergenic 45.0%
GGGTCTTTGCCTTCCATAAT+TGG + chr6_1:62760371-62760390 None:intergenic 45.0%
TCAACCATAAGTTTCCTGCC+TGG + chr6_1:62760470-62760489 None:intergenic 45.0%
TCATCCTCCATTTCCATGCT+TGG - chr6_1:62760562-62760581 Msa0890230:CDS 45.0%
CATCCTCCATTTCCATGCTT+GGG - chr6_1:62760563-62760582 Msa0890230:CDS 45.0%
TAGATAAGCTCACCCAAGCA+TGG + chr6_1:62760578-62760597 None:intergenic 45.0%
GATTTGGATGAAGCAACGAG+AGG - chr6_1:62761374-62761393 Msa0890230:intron 45.0%
GAGGTGCATTTGTTCACTGT+TGG - chr6_1:62761458-62761477 Msa0890230:intron 45.0%
GGAAAGGTTGAAGATGCCAT+TGG - chr6_1:62761479-62761498 Msa0890230:intron 45.0%
!! GAAGATGCCATTGGTGATGA+TGG - chr6_1:62761488-62761507 Msa0890230:intron 45.0%
CGAACACATATTCCTGAACC+TGG + chr6_1:62762154-62762173 None:intergenic 45.0%
! GTATGCATCTAGAACCTCTC+CGG + chr6_1:62762355-62762374 None:intergenic 45.0%
CAAGGGGACTAGACTATTCT+CGG + chr6_1:62762587-62762606 None:intergenic 45.0%
CGTTGAGATGTTGCCTCAAT+TGG - chr6_1:62762997-62763016 Msa0890230:intron 45.0%
! TGAAGTCTTGAAGGCTCTGA+AGG + chr6_1:62763234-62763253 None:intergenic 45.0%
AACCTCATCTCGTATTGGGT+AGG + chr6_1:62763435-62763454 None:intergenic 45.0%
ACCCAATACGAGATGAGGTT+TGG - chr6_1:62763435-62763454 Msa0890230:intron 45.0%
AATTCCCCCTTCGTCTTTGA+TGG - chr6_1:62763495-62763514 Msa0890230:intron 45.0%
AATTTGCAAGGGCGAATTGC+GGG + chr6_1:62763616-62763635 None:intergenic 45.0%
!! CCGGACCCTATTAATTTGCA+AGG + chr6_1:62763628-62763647 None:intergenic 45.0%
! CCTCTTTGTGATGGTGATGT+GGG + chr6_1:62763676-62763695 None:intergenic 45.0%
! TCCTCTTTGTGATGGTGATG+TGG + chr6_1:62763677-62763696 None:intergenic 45.0%
TGCATTTGTTCTCGCGAAGA+CGG + chr6_1:62763710-62763729 None:intergenic 45.0%
CTCGCCAATTCTCAAGGAAA+TGG - chr6_1:62763880-62763899 Msa0890230:intron 45.0%
TTTGGGCTGATGGTAACTGT+TGG - chr6_1:62764007-62764026 Msa0890230:intron 45.0%
! TGTGTTGTTGGAATGTCCAG+GGG + chr6_1:62764128-62764147 None:intergenic 45.0%
! CATGTGTTGTTGGAATGTCC+AGG + chr6_1:62764130-62764149 None:intergenic 45.0%
AAATTGTGTGGCACGTGTGT+CGG + chr6_1:62764246-62764265 None:intergenic 45.0%
AGAATTTCTCTGCACCACAC+GGG + chr6_1:62764937-62764956 None:intergenic 45.0%
GCAGAGAAATTCTAAGCGCA+AGG - chr6_1:62764944-62764963 Msa0890230:intron 45.0%
GTCCACCATGCTTTCTTCTT+TGG - chr6_1:62765051-62765070 Msa0890230:intron 45.0%
! GACCAAAGAAGAAAGCATGG+TGG + chr6_1:62765056-62765075 None:intergenic 45.0%
TTTCTTCTTTGGTCCAACCG+AGG - chr6_1:62765062-62765081 Msa0890230:intron 45.0%
AATCCAGTGCATACGTCAAC+GGG + chr6_1:62765335-62765354 None:intergenic 45.0%
! CGAAGAGTACATGCGTTCAA+TGG - chr6_1:62765383-62765402 Msa0890230:CDS 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - chr6_1:62765593-62765612 Msa0890230:CDS 45.0%
TTCCAACTCAAGTCATCGAG+AGG - chr6_1:62765631-62765650 Msa0890230:CDS 45.0%
AACCTCTCGATGACTTGAGT+TGG + chr6_1:62765636-62765655 None:intergenic 45.0%
AACTCAAGTCATCGAGAGGT+TGG - chr6_1:62765635-62765654 Msa0890230:CDS 45.0%
! CGAGAGGTTGGTTAAAGAGT+TGG - chr6_1:62765647-62765666 Msa0890230:CDS 45.0%
!!! TTTTTATTTTTTTTTTATCT+TGG - chr6_1:62764264-62764283 Msa0890230:intron 5.0%
!!! TTTTATTTTTTTTTTATCTT+GGG - chr6_1:62764265-62764284 Msa0890230:intron 5.0%
! TCCATTGGCAGGTAGGTTGA+AGG - chr6_1:62760439-62760458 Msa0890230:CDS 50.0%
TCCTTCAACCTACCTGCCAA+TGG + chr6_1:62760443-62760462 None:intergenic 50.0%
! TTGGCAGGTAGGTTGAAGGA+AGG - chr6_1:62760443-62760462 Msa0890230:CDS 50.0%
AGGTCCAGGCAGGAAACTTA+TGG - chr6_1:62760463-62760482 Msa0890230:CDS 50.0%
TCACCCAAGCATGGAAATGG+AGG + chr6_1:62760569-62760588 None:intergenic 50.0%
AGCTCACCCAAGCATGGAAA+TGG + chr6_1:62760572-62760591 None:intergenic 50.0%
ACGAGAGGCTAAGAACGAAG+AGG - chr6_1:62761389-62761408 Msa0890230:intron 50.0%
! GAACCTGGTAGCGAATGAGT+TGG + chr6_1:62762139-62762158 None:intergenic 50.0%
ACTCATTCGCTACCAGGTTC+AGG - chr6_1:62762139-62762158 Msa0890230:intron 50.0%
GCTGCTGACGTGTTCTTCAA+AGG - chr6_1:62763201-62763220 Msa0890230:intron 50.0%
GTCCTACCCAATACGAGATG+AGG - chr6_1:62763430-62763449 Msa0890230:intron 50.0%
ATTTGCAAGGGCGAATTGCG+GGG + chr6_1:62763615-62763634 None:intergenic 50.0%
!! TGTTGGCCTTCTCCTCTTTC+CGG + chr6_1:62763647-62763666 None:intergenic 50.0%
! TTGTGATGGTGATGTGGGAG+AGG + chr6_1:62763671-62763690 None:intergenic 50.0%
CCCACATCACCATCACAAAG+AGG - chr6_1:62763673-62763692 Msa0890230:intron 50.0%
CTCCACCACTTCTCTGTTGT+TGG - chr6_1:62763800-62763819 Msa0890230:intron 50.0%
CACCAACAACAGAGAAGTGG+TGG + chr6_1:62763805-62763824 None:intergenic 50.0%
TGGCACCAACAACAGAGAAG+TGG + chr6_1:62763808-62763827 None:intergenic 50.0%
CATCAAGCTTGAATAGCCCC+TGG - chr6_1:62764109-62764128 Msa0890230:intron 50.0%
TGTGCACGCCTTAGTAGTCA+AGG + chr6_1:62764208-62764227 None:intergenic 50.0%
AATTGTGTGGCACGTGTGTC+GGG + chr6_1:62764245-62764264 None:intergenic 50.0%
TGAGGCGTGTTATCTGCACA+TGG + chr6_1:62764792-62764811 None:intergenic 50.0%
AACCTTCTATCTCACCCGTG+TGG - chr6_1:62764920-62764939 Msa0890230:intron 50.0%
CGATGAGTACACGTCACTCT+TGG + chr6_1:62764976-62764995 None:intergenic 50.0%
AGAACGAATTGCGGCTACCT+CGG + chr6_1:62765082-62765101 None:intergenic 50.0%
AAACCCGTTGACGTATGCAC+TGG - chr6_1:62765329-62765348 Msa0890230:CDS 50.0%
GTGTCTGATGTTACACGTGC+TGG - chr6_1:62765462-62765481 Msa0890230:CDS 50.0%
!! TATGGAGGATTAGCTAGGGC+AGG - chr6_1:62765522-62765541 Msa0890230:CDS 50.0%
GCAGGAGATGGTACTAATCC+TGG - chr6_1:62765540-62765559 Msa0890230:CDS 50.0%
! GGTAGGTTGAAGGAAGGTCC+AGG - chr6_1:62760449-62760468 Msa0890230:CDS 55.0%
CTGCCAACTCATTCGCTACC+AGG - chr6_1:62762133-62762152 Msa0890230:intron 55.0%
TAGGGTCCGGAAAGAGGAGA+AGG - chr6_1:62763638-62763657 Msa0890230:intron 55.0%
GGTGATGTGGGAGAGGTTGT+TGG + chr6_1:62763664-62763683 None:intergenic 55.0%
GTGCAGCTCGCCAATTCTCA+AGG - chr6_1:62763874-62763893 Msa0890230:intron 55.0%
ATTGTGTGGCACGTGTGTCG+GGG + chr6_1:62764244-62764263 None:intergenic 55.0%
CACCACACGGGTGAGATAGA+AGG + chr6_1:62764925-62764944 None:intergenic 55.0%
GGTTGGGGGGAAGCTGTTTA+TGG - chr6_1:62765504-62765523 Msa0890230:CDS 55.0%
TGGGGGGAAGCTGTTTATGG+AGG - chr6_1:62765507-62765526 Msa0890230:CDS 55.0%
!! GGATTAGCTAGGGCAGGAGA+TGG - chr6_1:62765528-62765547 Msa0890230:CDS 55.0%
GGTTGAAGGAAGGTCCAGGC+AGG - chr6_1:62760453-62760472 Msa0890230:CDS 60.0%
CGAATTGCGGCTACCTCGGT+TGG + chr6_1:62765078-62765097 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 62760212 62765746 62760212 ID=Msa0890230;Name=Msa0890230
chr6_1 mRNA 62760212 62765746 62760212 ID=Msa0890230-mRNA-1;Parent=Msa0890230;Name=Msa0890230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|461
chr6_1 exon 62765309 62765746 62765309 ID=Msa0890230-mRNA-1:exon:11493;Parent=Msa0890230-mRNA-1
chr6_1 exon 62760212 62761159 62760212 ID=Msa0890230-mRNA-1:exon:11492;Parent=Msa0890230-mRNA-1
chr6_1 CDS 62765309 62765746 62765309 ID=Msa0890230-mRNA-1:cds;Parent=Msa0890230-mRNA-1
chr6_1 CDS 62760212 62761159 62760212 ID=Msa0890230-mRNA-1:cds;Parent=Msa0890230-mRNA-1
Gene Sequence

>Msa0890230

ATGGCCCAATCTCTGTTATTCAAAGTGAAGAGGAGTGAACCTGAATTGATAAGTCCATCAAAACCCACTCCTCATGAAATAAAACTACTCTCAGACATAGATGACCAACAATCTTTACGCTTTCATGTTCCTTTGATACAATTTTACAACTATAATCCAATTATGGAAGGCAAAGACCCTGTTGATGTTATTAGAAAAGCCCTTGCGAAAACGCTTGTGTTTTATTATCCATTGGCAGGTAGGTTGAAGGAAGGTCCAGGCAGGAAACTTATGGTTGATTGTACTGGAGAAGGTGTTCTGTTTATTGAAGCTGATGCTGATGTTACTCTTAAACAATTTGGTGATGCACTTCATCCTCCATTTCCATGCTTGGGTGAGCTTATCTATGATGTTCCTGGTTCTTCAGATGTGCTAAACACTCCATTGTTGCTTATTCAGATAACACGCCTCAAATGTAGAGGTTTCATTTTTGCTCTTCGTTTCAACCATACAATGACTGATGGATCAGGTATAGTTCAATTCATGAGTGCTTTAGCAGAAATATCTCAGGGTATGAGAAAACCTTCTATCTCACCCGTGTGGTGCAGAGAAATTCTAAGCGCAAGGGATTCACCAAGAGTGACGTGTACTCATCGTGAATACGAACCAGAACCTGACAACAAAGCAAACACATTTAACTTAGATGACATGGTCCACCATGCTTTCTTCTTTGGTCCAACCGAGGTAGCCGCAATTCGTTCTCTACTTCCACCTCACCAACAACAAAAATACTCCAATTTCGAAATCATCACATCATATTTTTGGCGTTGTCGTACACTAGCATTACAACTAGATACTAACGAAGAAGTTCGCATAATCTGCATCGTCGATGCACGTAGCAAATTTGTTAACCTACTTGTACCAAATGGTTACTATGGTAACGCTATAGCGCTTCCTACTGCAATTACAACTGTAGGAAAACTAATTGAAAACCCGTTGACGTATGCACTGGATTTAGTTAAGAAAGCAAAAGCTAATGTCACCGAAGAGTACATGCGTTCAATGGCAGATTTATTGGCAATCAAGGGTAGACCTCATTTTACTACAGCGAATGCTTGTTTAGTGTCTGATGTTACACGTGCTGGATTTAGAGATGTTGATTTTGGTTGGGGGGAAGCTGTTTATGGAGGATTAGCTAGGGCAGGAGATGGTACTAATCCTGGTATTTCTACCATTTATATACCTTTTAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCAGTTTTTTTTCCAACTCAAGTCATCGAGAGGTTGGTTAAAGAGTTGGATAAAGTTCTTAAGAACAACATTAACTCGCCTACTATGGGTGATAGAAAATCTAGAATCATTATTTCTTCGTTGTAG
Protein sequence

>Msa0890230

MAQSLLFKVKRSEPELISPSKPTPHEIKLLSDIDDQQSLRFHVPLIQFYNYNPIMEGKDPVDVIRKALAKTLVFYYPLAGRLKEGPGRKLMVDCTGEGVLFIEADADVTLKQFGDALHPPFPCLGELIYDVPGSSDVLNTPLLLIQITRLKCRGFIFALRFNHTMTDGSGIVQFMSALAEISQGMRKPSISPVWCREILSARDSPRVTCTHREYEPEPDNKANTFNLDDMVHHAFFFGPTEVAAIRSLLPPHQQQKYSNFEIITSYFWRCRTLALQLDTNEEVRIICIVDARSKFVNLLVPNGYYGNAIALPTAITTVGKLIENPLTYALDLVKKAKANVTEEYMRSMADLLAIKGRPHFTTANACLVSDVTRAGFRDVDFGWGEAVYGGLARAGDGTNPGISTIYIPFKNAKGEEGLVIPVFFPTQVIERLVKELDKVLKNNINSPTMGDRKSRIIISSL*