AlfalfaGEDB | Msa0959700

M. sativa cultivar zhongmu-4 / Msa0959700

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
PFAM: PF01408.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959700	XP_013452629.1	88.219	365	12	2	1	334	1	365	0.0	643

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959700	sp\|Q9SZ83\|Y4967_ARATH	50.276	362	146	4	1	331	1	359	4.35e-127	370

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0959700	0.841443	4.738021e-58	-8.615850e-47
Msa0027860	Msa0959700	0.800404	1.464126e-48	-8.615850e-47
Msa0063540	Msa0959700	0.813017	3.167180e-51	-8.615850e-47
Msa0096590	Msa0959700	0.804560	2.037699e-49	-8.615850e-47
Msa0123530	Msa0959700	0.805929	1.052618e-49	-8.615850e-47
Msa0150910	Msa0959700	0.813105	3.028523e-51	-8.615850e-47
Msa0150920	Msa0959700	0.837538	4.899685e-57	-8.615850e-47
Msa0163340	Msa0959700	0.818347	2.055737e-52	-8.615850e-47
Msa0168010	Msa0959700	0.807666	4.521384e-50	-8.615850e-47
Msa0195580	Msa0959700	0.819182	1.328349e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959700	MtrunA17_Chr6g0477771	88.219	365	12	2	1	334	1	365	0.0	643
Msa0959700	MtrunA17_Chr6g0464971	49.719	356	145	4	7	331	9	361	8.40e-121	352
Msa0959700	MtrunA17_Chr6g0465111	47.238	362	157	4	1	331	1	359	4.84e-119	347
Msa0959700	MtrunA17_Chr6g0465121	46.961	362	153	4	1	331	14	367	1.87e-117	343
Msa0959700	MtrunA17_Chr1g0200981	48.343	362	147	5	4	331	3	358	5.13e-114	334
Msa0959700	MtrunA17_Chr6g0464961	48.889	360	142	5	7	331	31	383	1.09e-113	336
Msa0959700	MtrunA17_Chr3g0110001	43.443	366	169	6	1	331	1	363	2.38e-98	295
Msa0959700	MtrunA17_Chr6g0464931	49.020	102	33	1	7	89	9	110	7.36e-21	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959700	AT4G09670.1	50.276	362	146	4	1	331	1	359	4.43e-128	370
Msa0959700	AT1G34200.1	44.044	361	156	5	1	329	1	347	1.30e-100	300
Msa0959700	AT1G66130.1	35.989	364	200	6	1	331	1	364	6.94e-76	238

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Find 71 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGATTTAGATGGTCT+TGG	0.445743	6_3:+77081787	Msa0959700:CDS
AAACTTTGATGTAACAATTT+TGG	0.095575	6_3:+77082002	Msa0959700:CDS
AAATGAAACCTGAGAAGACA+TGG	0.592269	6_3:+77082244	Msa0959700:CDS
AACAAGGTAGGTGGTGTCCA+AGG	0.500328	6_3:+77082130	Msa0959700:CDS
AACAATGTAATCATATCTTG+TGG	0.598684	6_3:+77081916	Msa0959700:CDS
AACCCTAAACTCTCTTCAAA+AGG	0.467354	6_3:-77082063	None:intergenic
AAGGAGTTTGCTGATTTGGT+TGG	0.495544	6_3:+77082204	Msa0959700:CDS
AATGCCACACTCATAGCCAT+TGG	0.576297	6_3:+77073110	Msa0959700:CDS
AATGGAGTGCAGTTTATGGA+TGG	0.581921	6_3:+77073383	Msa0959700:CDS
AATTGTGTTGGATGCTGTGA+AGG	0.579186	6_3:+77082290	Msa0959700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGGTTGGGAAGATTTATT+TGG	-	chr6_3:77073711-77073730	None:intergenic	30.0%
ACGTTTGACATAAAAATGTG+AGG	-	chr6_3:77074109-77074128	None:intergenic	30.0%
ACCGAAAAAAAAGATGTGAT+AGG	-	chr6_3:77074734-77074753	None:intergenic	30.0%
AGACAGCTACATATAATATG+TGG	+	chr6_3:77075165-77075184	Msa0959700:intron	30.0%
ATGGATAAATCCTAGTTAGT+AGG	+	chr6_3:77076254-77076273	Msa0959700:intron	30.0%
CAAACATTTGACATCAAAAG+AGG	-	chr6_3:77076280-77076299	None:intergenic	30.0%
ATTCTCAATTTATTTAGGGG+AGG	+	chr6_3:77077126-77077145	Msa0959700:intron	30.0%
GTTTCATTACGTGGATAATA+TGG	+	chr6_3:77077293-77077312	Msa0959700:intron	30.0%
GTGTTAGTTAATGAGTGATA+TGG	+	chr6_3:77077353-77077372	Msa0959700:intron	30.0%
CGAATAGTTATTATCGATCT+GGG	+	chr6_3:77077599-77077618	Msa0959700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	77073023	77082359	77073023	ID=Msa0959700;Name=Msa0959700
chr6_3	mRNA	77073023	77082359	77073023	ID=Msa0959700-mRNA-1;Parent=Msa0959700;Name=Msa0959700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|0\|0\|3\|0\|334
chr6_3	exon	77073023	77073235	77073023	ID=Msa0959700-mRNA-1:exon:13807;Parent=Msa0959700-mRNA-1
chr6_3	exon	77073293	77073487	77073293	ID=Msa0959700-mRNA-1:exon:13808;Parent=Msa0959700-mRNA-1
chr6_3	exon	77081763	77082359	77081763	ID=Msa0959700-mRNA-1:exon:13809;Parent=Msa0959700-mRNA-1
chr6_3	CDS	77073023	77073235	77073023	ID=Msa0959700-mRNA-1:cds;Parent=Msa0959700-mRNA-1
chr6_3	CDS	77073293	77073487	77073293	ID=Msa0959700-mRNA-1:cds;Parent=Msa0959700-mRNA-1
chr6_3	CDS	77081763	77082359	77081763	ID=Msa0959700-mRNA-1:cds;Parent=Msa0959700-mRNA-1

Gene Sequence

>Msa0959700

ATGGCTGATGAAACGGTTGTGCGGTTTGGTATTCTTGGATGTGCTCAAATCTCTATCAAGTTATGCAAAGCCATAAGCAAAGCACCAAATGCCACACTCATAGCCATTGGAAGCCGTTCTCTAGAGAAAGCAACTGCTTTTGCGGCGGAGCAGGGGTTGCTGGAGGTGGTTAGGGTTTACGGGAGCTATGAGGCTGTGTTGGAAGATAATGAGGCCGCCGAGAGGGGGAAGCATGTGTTGTTGGAGAAGCCGGTCGCAATGAATGTGTCGGAGCTTGATCGGATTCTTGAAGCTTGTGAGGCTAATGGAGTGCAGTTTATGGATGGTTCAATGTGGTTGCATCACCCTAGAACTGCTAAAATGAAGGAGGCTTTGCGTGATGAGCAACGTTTTGGTCAACTCAAATGGTTCCTCAAAAACAGCATTCGCATGAAACCAGATTTAGATGGTCTTGGTGCTCTTGGTGACATAGGTTGGTACAGCATCCAAGCAATTTTATGGTCTGTAAACTATGAGCTTCCAAAATCAGTTCTTGCATTCCCAAAAGCCACACTCAATGAAAACAATGTAATCATATCTTGTGGTTCTTCATTACATTGGGAAGATGGAAAATCTGCCACATTCCATTGCTCTTTCTTAACCTATGTAAACTTTGATGTAACAATTTTGGGAACAAAAGGGTCGCTTCGTCTTCACGATTTAACACTTCCTTTTGAAGAGAGTTTAGGGTTTGGAACATTTTTGGAGTCGTCGGAGATTGATTATGCGAAGATTGAACAAGGTAGGTGGTGTCCAAGGGCAAATGAACATGTTGTTGAGACAGAATTTTCTCAAGATGTTTGGATGATTAAGGAGTTTGCTGATTTGGTTGGTAAAATTAAGAGGTTGGAAATGAAACCTGAGAAGACATGGTCAGTTGTTAGTAGAAAGACTCAAATTGTGTTGGATGCTGTGAAGGAGTCTATTCAAAGAGGTTATGAATCTGTTGAAATTGTGGTGAATTAG

Protein sequence

>Msa0959700

MADETVVRFGILGCAQISIKLCKAISKAPNATLIAIGSRSLEKATAFAAEQGLLEVVRVYGSYEAVLEDNEAAERGKHVLLEKPVAMNVSELDRILEACEANGVQFMDGSMWLHHPRTAKMKEALRDEQRFGQLKWFLKNSIRMKPDLDGLGALGDIGWYSIQAILWSVNYELPKSVLAFPKATLNENNVIISCGSSLHWEDGKSATFHCSFLTYVNFDVTILGTKGSLRLHDLTLPFEESLGFGTFLESSEIDYAKIEQGRWCPRANEHVVETEFSQDVWMIKEFADLVGKIKRLEMKPEKTWSVVSRKTQIVLDAVKESIQRGYESVEIVVN*