AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0918140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0918140 MtrunA17_Chr1g0165661 77.403 385 87 0 1 385 1 385 0.0 635
Msa0918140 MtrunA17_Chr1g0165671 76.104 385 90 2 1 385 19 401 0.0 617
Msa0918140 MtrunA17_Chr1g0165681 73.506 385 102 0 1 385 1 385 0.0 605
Msa0918140 MtrunA17_Chr1g0165711 64.935 385 96 3 1 385 1 346 1.00e-180 508
Msa0918140 MtrunA17_Chr7g0273781 57.326 389 157 4 2 385 36 420 3.25e-163 467
Msa0918140 MtrunA17_Chr7g0273791 58.031 386 153 4 5 385 6 387 3.13e-161 461
Msa0918140 MtrunA17_Chr1g0191081 59.115 384 153 4 4 385 13 394 6.44e-160 457
Msa0918140 MtrunA17_Chr7g0273731 57.403 385 157 4 5 385 89 470 6.61e-160 459
Msa0918140 MtrunA17_Chr5g0433641 57.292 384 160 3 5 385 6 388 9.74e-160 457
Msa0918140 MtrunA17_Chr7g0273721 56.883 385 161 3 5 385 7 390 4.91e-159 455
Msa0918140 MtrunA17_Chr7g0273761 57.662 385 158 4 5 385 378 761 3.60e-156 460
Msa0918140 MtrunA17_Chr7g0273761 53.498 243 109 3 146 385 32 273 2.03e-79 260
Msa0918140 MtrunA17_Chr6g0471381 96.296 189 7 0 197 385 6 194 2.33e-134 385
Msa0918140 MtrunA17_Chr6g0471371 97.333 150 4 0 1 150 1 150 7.69e-102 299
Msa0918140 MtrunA17_Chr1g0165741 85.034 147 22 0 1 147 1 147 1.20e-86 259
Msa0918140 MtrunA17_Chr3g0132001 34.817 382 236 8 9 385 14 387 4.13e-76 242
Msa0918140 MtrunA17_Chr8g0386141 34.783 391 239 10 1 385 1 381 2.44e-74 238
Msa0918140 MtrunA17_Chr7g0224391 35.263 380 232 9 12 385 19 390 2.30e-72 232
Msa0918140 MtrunA17_Chr6g0471971 48.684 228 90 5 162 385 2 206 2.56e-71 223
Msa0918140 MtrunA17_Chr8g0353421 78.125 128 28 0 1 128 1 128 2.62e-69 214
Msa0918140 MtrunA17_Chr7g0273741 63.699 146 53 0 2 147 3 148 1.26e-65 205
Msa0918140 MtrunA17_Chr3g0098961 60.959 146 57 0 2 147 6 151 9.17e-60 191
Msa0918140 MtrunA17_Chr6g0471891 58.974 156 39 1 230 385 1 131 5.43e-57 186
Msa0918140 MtrunA17_Chr1g0165731 71.963 107 30 0 162 268 2 108 1.20e-54 176
Msa0918140 MtrunA17_Chr3g0141851 32.984 382 230 12 17 385 20 388 5.73e-53 182
Msa0918140 MtrunA17_Chr2g0306321 31.510 384 247 10 17 385 26 408 2.54e-49 172
Msa0918140 MtrunA17_Chr4g0027071 28.646 384 254 8 16 383 19 398 7.42e-48 169
Msa0918140 MtrunA17_Chr2g0334001 29.167 408 245 11 5 388 1 388 1.35e-47 167
Msa0918140 MtrunA17_Chr4g0001861 30.645 372 218 9 41 388 34 389 8.33e-47 165
Msa0918140 MtrunA17_Chr8g0371821 29.397 398 241 10 13 388 7 386 2.86e-45 161
Msa0918140 MtrunA17_Chr3g0113821 29.820 389 251 11 9 382 5 386 1.90e-43 156
Msa0918140 MtrunA17_Chr7g0252731 28.608 388 241 11 8 385 16 377 6.04e-39 144
Msa0918140 MtrunA17_Chr3g0106691 28.000 400 262 12 7 386 54 447 1.35e-38 144
Msa0918140 MtrunA17_Chr3g0087401 26.225 408 247 12 17 385 10 402 2.79e-38 143
Msa0918140 MtrunA17_Chr7g0270771 31.081 296 160 8 5 286 1 266 4.01e-38 138
Msa0918140 MtrunA17_Chr2g0283361 30.052 386 254 12 9 384 2 381 3.33e-37 140
Msa0918140 MtrunA17_Chr6g0470591 26.485 404 266 12 3 382 5 401 1.09e-36 139
Msa0918140 MtrunA17_Chr7g0253531 27.451 408 252 14 15 384 8 409 3.07e-36 137
Msa0918140 MtrunA17_Chr7g0253501 28.193 415 240 15 16 385 9 410 3.36e-36 137
Msa0918140 MtrunA17_Chr3g0106721 28.165 387 254 11 7 378 8 385 6.09e-36 136
Msa0918140 MtrunA17_Chr7g0235531 26.866 402 259 12 8 386 3 392 1.26e-32 127
Msa0918140 MtrunA17_Chr4g0072041 26.700 397 256 11 17 385 22 411 1.73e-32 127
Msa0918140 MtrunA17_Chr3g0106661 29.517 393 245 13 16 382 17 403 2.50e-32 127
Msa0918140 MtrunA17_Chr7g0253541 26.551 403 255 13 17 385 12 407 2.85e-31 124
Msa0918140 MtrunA17_Chr7g0273701 53.922 102 46 1 285 385 1 102 4.15e-30 114
Msa0918140 MtrunA17_Chr4g0054081 27.034 381 240 11 35 385 34 406 1.53e-29 119
Msa0918140 MtrunA17_Chr3g0106711 32.766 235 131 6 7 216 8 240 1.18e-28 112
Msa0918140 MtrunA17_Chr2g0311401 27.306 271 159 7 142 388 2 258 1.57e-26 107
Msa0918140 MtrunA17_Chr3g0106761 27.083 336 211 11 69 382 19 342 5.85e-25 105
Msa0918140 MtrunA17_Chr3g0106741 27.523 327 203 12 78 382 59 373 1.14e-23 102
Msa0918140 MtrunA17_Chr7g0273691 48.889 90 44 1 165 252 1 90 3.00e-23 93.2
Msa0918140 MtrunA17_Chr4g0004691 31.515 165 107 2 17 181 12 170 9.76e-23 94.4
Msa0918140 MtrunA17_Chr5g0442701 24.402 418 262 15 7 385 8 410 2.54e-22 98.2
Msa0918140 MtrunA17_Chr7g0273681 75.510 49 12 0 91 139 1 49 2.00e-21 86.7
Msa0918140 MtrunA17_Chr5g0442691 23.855 415 268 14 7 385 31 433 2.04e-21 95.9
Msa0918140 MtrunA17_Chr1g0199561 23.096 407 255 15 15 387 9 391 3.11e-21 95.1
Msa0918140 MtrunA17_Chr4g0053061 26.020 392 235 17 24 385 59 425 4.62e-21 94.7
Msa0918140 MtrunA17_Chr8g0374911 25.765 392 236 17 24 385 52 418 1.09e-20 93.6
Msa0918140 MtrunA17_Chr5g0438701 24.433 397 243 15 15 385 9 374 1.35e-20 93.2
Msa0918140 MtrunA17_Chr4g0010311 25.455 385 247 16 23 385 25 391 4.88e-20 91.3
Msa0918140 MtrunA17_Chr8g0354371 25.459 381 244 14 23 385 31 389 2.41e-19 89.4
Msa0918140 MtrunA17_Chr4g0010121 23.907 389 243 14 23 385 70 431 2.42e-19 89.7
Msa0918140 MtrunA17_Chr4g0010331 24.011 379 254 13 23 385 25 385 5.45e-19 88.2
Msa0918140 MtrunA17_Chr3g0095731 26.400 375 229 15 48 386 47 410 6.10e-19 88.2
Msa0918140 MtrunA17_Chr8g0374641 26.166 386 239 15 23 385 30 392 9.59e-19 87.4
Msa0918140 MtrunA17_Chr3g0125001 26.154 390 230 20 23 385 25 383 1.43e-18 87.0
Msa0918140 MtrunA17_Chr4g0010361 24.219 384 254 14 23 385 25 392 3.51e-18 85.9
Msa0918140 MtrunA17_Chr5g0442721 23.626 364 224 12 61 385 64 412 4.81e-18 85.5
Msa0918140 MtrunA17_Chr8g0376901 23.232 396 255 12 15 385 9 380 5.51e-18 85.1
Msa0918140 MtrunA17_Chr3g0095721 24.646 353 226 12 64 386 72 414 5.91e-18 85.5
Msa0918140 MtrunA17_Chr3g0134041 24.129 373 239 13 36 385 44 395 1.10e-17 84.3
Msa0918140 MtrunA17_Chr7g0224131 24.409 381 253 13 23 385 25 388 1.25e-17 84.3
Msa0918140 MtrunA17_Chr3g0134121 27.859 341 220 15 24 350 31 359 2.55e-17 83.6
Msa0918140 MtrunA17_Chr3g0134071 26.012 346 220 15 64 385 70 403 2.77e-17 83.6
Msa0918140 MtrunA17_Chr4g0010381 25.714 385 245 14 23 385 25 390 3.84e-17 82.8
Msa0918140 MtrunA17_Chr3g0134061 24.403 377 247 16 36 385 42 407 4.12e-17 82.8
Msa0918140 MtrunA17_Chr8g0376891 23.990 396 250 16 15 384 9 379 5.58e-17 82.4
Msa0918140 MtrunA17_Chr3g0134091 26.567 335 225 11 23 346 30 354 5.86e-17 82.4
Msa0918140 MtrunA17_Chr3g0123061 22.704 392 244 15 15 385 11 364 6.60e-17 82.0
Msa0918140 MtrunA17_Chr5g0408911 25.897 390 237 16 22 384 33 397 1.46e-16 81.3
Msa0918140 MtrunA17_Chr4g0053111 23.057 386 257 14 23 385 28 396 3.66e-16 79.7
Msa0918140 MtrunA17_Chr8g0359251 25.260 384 243 15 23 385 30 390 6.25e-16 79.0
Msa0918140 MtrunA17_Chr6g0471981 64.706 51 18 0 100 150 1 51 1.20e-15 71.2
Msa0918140 MtrunA17_Chr2g0311411 33.784 148 92 4 5 152 1 142 2.57e-15 72.8
Msa0918140 MtrunA17_Chr7g0252761 30.323 155 104 3 8 161 15 166 9.65e-15 71.6
Msa0918140 MtrunA17_Chr1g0165721 78.049 41 9 0 345 385 1 41 1.08e-14 70.1
Msa0918140 MtrunA17_Chr5g0414431 65.385 52 13 1 55 106 6 52 1.21e-14 67.8
Msa0918140 MtrunA17_Chr4g0010351 25.294 340 224 11 23 347 25 349 1.25e-14 74.7
Msa0918140 MtrunA17_Chr7g0252771 26.087 207 139 6 187 385 2 202 3.17e-14 72.0
Msa0918140 MtrunA17_Chr3g0106631 27.338 139 98 2 147 282 2 140 2.26e-13 67.8
Msa0918140 MtrunA17_Chr3g0097841 29.139 151 88 4 251 385 48 195 3.86e-13 68.9
Msa0918140 MtrunA17_Chr7g0273671 60.976 41 16 0 2 42 3 43 6.18e-12 60.1
Msa0918140 MtrunA17_Chr7g0224121 30.496 141 86 6 51 184 46 181 9.94e-12 63.9
Msa0918140 MtrunA17_Chr2g0278481 27.528 178 115 7 16 190 24 190 5.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0918140 AT5G17540.1 58.098 389 156 5 1 385 1 386 2.76e-158 453
Msa0918140 AT3G03480.1 53.866 388 167 7 4 385 14 395 1.21e-137 400
Msa0918140 AT5G41040.1 35.733 389 230 10 7 385 31 409 1.98e-77 246
Msa0918140 AT5G41040.2 35.733 389 230 10 7 385 15 393 2.08e-77 246
Msa0918140 AT5G63560.1 34.184 392 238 10 1 385 1 379 6.37e-74 236
Msa0918140 AT3G48720.1 32.737 391 249 10 1 385 1 383 1.84e-69 225
Msa0918140 AT1G27620.1 30.829 386 244 10 10 385 10 382 5.08e-51 177
Msa0918140 AT3G62160.1 30.941 404 221 13 5 384 1 370 2.29e-47 167
Msa0918140 AT1G03390.1 31.701 388 241 12 16 385 24 405 8.82e-47 166
Msa0918140 AT2G40230.1 32.398 392 231 14 13 385 9 385 1.96e-45 162
Msa0918140 AT1G28680.1 28.647 377 258 10 16 384 11 384 2.12e-45 162
Msa0918140 AT5G48930.1 28.861 395 260 10 8 388 2 389 8.72e-45 160
Msa0918140 AT1G65450.1 31.472 394 245 11 7 385 16 399 3.60e-44 159
Msa0918140 AT5G57840.1 28.571 406 249 13 8 387 2 392 2.02e-42 154
Msa0918140 AT1G28680.2 29.446 343 232 9 16 351 11 350 2.99e-42 152
Msa0918140 AT2G19070.1 27.820 399 254 11 17 387 12 404 3.63e-38 143
Msa0918140 AT3G47170.1 27.436 390 226 12 7 355 10 383 7.84e-37 139
Msa0918140 AT5G07080.1 28.922 408 237 14 9 384 14 400 8.34e-36 136
Msa0918140 AT2G23510.1 27.941 408 251 16 1 383 5 394 9.09e-31 122
Msa0918140 AT2G25150.1 27.612 402 238 13 15 385 19 398 1.55e-30 122
Msa0918140 AT1G31490.1 24.138 406 262 14 6 388 3 385 6.44e-23 100
Msa0918140 AT1G78990.1 24.148 352 231 9 58 384 53 393 5.49e-22 97.8
Msa0918140 AT1G32910.1 25.364 343 223 13 64 384 65 396 2.90e-21 95.5
Msa0918140 AT3G50280.1 24.854 342 228 11 64 385 59 391 5.18e-21 94.7
Msa0918140 AT3G26040.1 23.858 394 253 13 15 385 9 378 7.06e-20 91.3
Msa0918140 AT5G38130.1 25.130 386 242 14 23 385 48 409 7.63e-20 91.3
Msa0918140 AT5G42830.1 26.197 355 223 9 15 350 23 357 1.25e-19 90.5
Msa0918140 AT1G24420.2 25.964 389 248 15 15 385 11 377 1.19e-18 87.8
Msa0918140 AT1G24420.1 25.964 389 248 15 15 385 11 377 1.19e-18 87.8
Msa0918140 AT1G65450.3 29.114 237 148 7 162 385 6 235 1.40e-18 85.5
Msa0918140 AT4G15390.1 24.919 309 199 11 3 299 2 289 2.20e-18 87.0
Msa0918140 AT4G15390.2 24.919 309 199 11 3 299 2 289 2.20e-18 87.0
Msa0918140 AT3G50270.1 24.093 386 251 13 23 385 30 396 5.23e-17 82.8
Msa0918140 AT5G16410.1 22.674 344 225 11 64 384 91 416 5.56e-17 82.8
Msa0918140 AT5G07860.1 24.852 338 225 8 64 385 72 396 5.77e-17 82.8
Msa0918140 AT5G23940.1 26.190 378 240 14 41 385 28 399 5.87e-17 82.8
Msa0918140 AT3G30280.1 29.348 184 116 6 7 184 4 179 6.64e-15 76.3
Msa0918140 AT3G50300.1 24.490 343 228 13 64 385 59 391 6.39e-14 73.6
Msa0918140 AT1G24430.1 22.573 412 246 16 7 385 3 374 1.23e-13 72.4
Msa0918140 AT5G47980.1 23.858 394 255 17 15 385 11 382 2.38e-13 71.6
Msa0918140 AT5G07850.1 24.092 303 208 11 64 352 70 364 2.80e-13 71.6
Msa0918140 AT1G65450.2 35.374 147 90 4 7 151 16 159 5.65e-13 67.0

Find 74 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCATGCTTTCTTCTT+TGG 0.166776 6_2:-44866590 Msa0918140:CDS
TGGTTGGGGAAAGCTGTTTA+TGG 0.203863 6_2:-44866138 Msa0918140:CDS
GGGTCTTTGCCTTCCATAAT+TGG 0.207524 6_2:+44870659 None:intergenic
CACTCCATTGTTGCTTATTC+AGG 0.213746 6_2:-44870399 Msa0918140:intron
GCGTTCAATGGCAGATTTAT+TGG 0.233335 6_2:-44866246 Msa0918140:CDS
TTTGATGGACTTATCAATTC+AGG 0.276801 6_2:+44870776 None:intergenic
TCATCCTCCATTTCCATGCT+TGG 0.295990 6_2:-44870465 Msa0918140:CDS
GGATTTAGAGATGTTGATTT+TGG 0.298021 6_2:-44866158 Msa0918140:CDS
TTACAACTATAATCCAATTA+TGG 0.298751 6_2:-44870672 Msa0918140:CDS
TTTGCTTTGTTGTCAGGTTC+TGG 0.302024 6_2:+44866635 None:intergenic
CATCCTCCATTTCCATGCTT+GGG 0.309107 6_2:-44870464 Msa0918140:CDS
TCACTTTGAATAACAGAGAT+TGG 0.319779 6_2:+44870810 None:intergenic
GATGTTACTCTTAAACAATT+TGG 0.341792 6_2:-44870497 Msa0918140:CDS
AATGTGTTTGCTTTGTTGTC+AGG 0.355303 6_2:+44866629 None:intergenic
GAGCTTATCTATGATGTTCC+TGG 0.364126 6_2:-44870440 Msa0918140:CDS
GGCAGATTTATTGGTAATCA+AGG 0.387882 6_2:-44866237 Msa0918140:CDS
AGCTCACCCAAGCATGGAAA+TGG 0.405012 6_2:+44870458 None:intergenic
AAACTTATGGTTGATTGTAC+TGG 0.411896 6_2:-44870551 Msa0918140:CDS
AGGTCCTGGCAGGAAACTTA+TGG 0.416255 6_2:-44870564 Msa0918140:CDS
CTGTCTGATGTTACACGTGC+TGG 0.421789 6_2:-44866179 Msa0918140:CDS
CTTGTACCAAATGGTTACTA+TGG 0.428082 6_2:-44866386 Msa0918140:CDS
ATCCATTGGCAGGTAGGTTG+AGG 0.439249 6_2:-44870589 Msa0918140:CDS
CACTTTGAATAACAGAGATT+GGG 0.439909 6_2:+44870811 None:intergenic
TGCTTTAGCAGAAATATCTC+AGG 0.441961 6_2:-44866753 Msa0918140:CDS
AATCCAGTGCATACGTCAAC+GGG 0.450348 6_2:+44866309 None:intergenic
AAATGAAACCTCTACATTTG+AGG 0.462956 6_2:+44866834 None:intergenic
GTTAACCTACTTGTACCAAA+TGG 0.467873 6_2:-44866395 Msa0918140:CDS
CATGAAAGCGTAAAGATTGT+TGG 0.467969 6_2:+44870711 None:intergenic
CACCACACGGGTGAGATAGA+AGG 0.468435 6_2:+44866719 None:intergenic
CTGATCCGTCAGTCATTGTA+TGG 0.469290 6_2:+44866795 None:intergenic
CATTGAACGCATGTACTCTT+CGG 0.471418 6_2:+44866259 None:intergenic
CCTACAGTTGTAATTGCAAC+GGG 0.475717 6_2:+44866347 None:intergenic
GCGTTACCATAGTAACCATT+TGG 0.486089 6_2:+44866380 None:intergenic
ATGGTGGACCATGTCATCTA+AGG 0.489326 6_2:+44866604 None:intergenic
TCCATTGGCAGGTAGGTTGA+GGG 0.500938 6_2:-44870588 Msa0918140:CDS
TCCTACAGTTGTAATTGCAA+CGG 0.510617 6_2:+44866346 None:intergenic
AGAACGAATTGCGGCTACCT+CGG 0.515692 6_2:+44866562 None:intergenic
CGATGAGTACACGTCACTCT+TGG 0.519362 6_2:+44866668 None:intergenic
GGTTGAGGGAAGGTCCTGGC+AGG 0.519862 6_2:-44870574 Msa0918140:CDS
TTTATTATCCATTGGCAGGT+AGG 0.523223 6_2:-44870595 Msa0918140:CDS
CGAATTGCGGCTACCTCGGT+TGG 0.525664 6_2:+44866566 None:intergenic
GGTAGGTTGAGGGAAGGTCC+TGG 0.530522 6_2:-44870578 Msa0918140:CDS
CGAAGAGTACATGCGTTCAA+TGG 0.533690 6_2:-44866258 Msa0918140:CDS
CATACAATGACTGACGGATC+AGG 0.536611 6_2:-44866794 Msa0918140:CDS
TAGTTGTAAAATTGTATCAA+AGG 0.541244 6_2:+44870686 None:intergenic
TTGGGGAAAGCTGTTTATGG+AGG 0.546692 6_2:-44866135 Msa0918140:CDS
AAACCCGTTGACGTATGCAC+TGG 0.551116 6_2:-44866312 Msa0918140:CDS
TAGAATTTCTCTGCACCACA+CGG 0.551792 6_2:+44866706 None:intergenic
TCCCTCAACCTACCTGCCAA+TGG 0.553662 6_2:+44870587 None:intergenic
CTCTGTTATTCAAAGTGAAG+AGG 0.555419 6_2:-44870805 Msa0918140:CDS
GCAGAGAAATTCTAAGCGCA+AGG 0.556633 6_2:-44866697 Msa0918140:CDS
AACTATAATCCAATTATGGA+AGG 0.560081 6_2:-44870668 Msa0918140:CDS
CCCGTTGCAATTACAACTGT+AGG 0.563191 6_2:-44866347 Msa0918140:CDS
AAATCCAGTGCATACGTCAA+CGG 0.566201 6_2:+44866308 None:intergenic
GCAGATTTATTGGTAATCAA+GGG 0.567803 6_2:-44866236 Msa0918140:CDS
TAGATAAGCTCACCCAAGCA+TGG 0.578422 6_2:+44870452 None:intergenic
TCACCCAAGCATGGAAATGG+AGG 0.596066 6_2:+44870461 None:intergenic
AGTACCTGAATAAGCAACAA+TGG 0.598590 6_2:+44870395 None:intergenic
AGTAACCATTTGGTACAAGT+AGG 0.600048 6_2:+44866390 None:intergenic
GCATTCGCTGTAGTAAAATG+AGG 0.605286 6_2:+44866209 None:intergenic
TCAACCATAAGTTTCCTGCC+AGG 0.615495 6_2:+44870560 None:intergenic
TTCAACCATACAATGACTGA+CGG 0.622044 6_2:-44866800 Msa0918140:CDS
ATGGTTGATTGTACTGGAGA+AGG 0.624573 6_2:-44870545 Msa0918140:CDS
AGAATTTCTCTGCACCACAC+GGG 0.634985 6_2:+44866707 None:intergenic
CAGAGAAATTCTAAGCGCAA+GGG 0.649135 6_2:-44866696 Msa0918140:CDS
TGGAAGTAGAGAACGAATTG+CGG 0.652589 6_2:+44866553 None:intergenic
TTGGACCAAAGAAGAAAGCA+TGG 0.654532 6_2:+44866585 None:intergenic
TTGGCAGGTAGGTTGAGGGA+AGG 0.661218 6_2:-44870584 Msa0918140:CDS
GTAACACGCCTCAAATGTAG+AGG 0.664855 6_2:-44866842 Msa0918140:CDS
GCTTTAGCAGAAATATCTCA+GGG 0.672367 6_2:-44866752 Msa0918140:CDS
TTTAGCACATCTGAAGAACC+AGG 0.677737 6_2:+44870422 None:intergenic
TTTCTTCTTTGGTCCAACCG+AGG 0.682343 6_2:-44866579 Msa0918140:CDS
AACCTTCTATCTCACCCGTG+TGG 0.728430 6_2:-44866721 Msa0918140:CDS
GACCAAAGAAGAAAGCATGG+TGG 0.740416 6_2:+44866588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTTTTATTTAA+GGG + chr6_2:44866707-44866726 None:intergenic 0.0%
!!! ATTTTTTTTATTTTTATTTA+AGG + chr6_2:44866708-44866727 None:intergenic 0.0%
!! GATACTAAAAATAAATTTAA+GGG + chr6_2:44866676-44866695 None:intergenic 10.0%
!!! AGAAAATAAATTAAGTTTTT+GGG + chr6_2:44866848-44866867 None:intergenic 10.0%
!!! AAGAAAATAAATTAAGTTTT+TGG + chr6_2:44866849-44866868 None:intergenic 10.0%
!! CGATACTAAAAATAAATTTA+AGG + chr6_2:44866677-44866696 None:intergenic 15.0%
!!! TTAATTTTCATTACAGTTTT+TGG - chr6_2:44866747-44866766 Msa0918140:CDS 15.0%
!! AATAAAAAAAATGTTAAAGG+CGG - chr6_2:44866807-44866826 Msa0918140:CDS 15.0%
!!! TTTAAAGATTATTGTTGATT+TGG + chr6_2:44867503-44867522 None:intergenic 15.0%
!!! TTGAATTGTGTTTTTTTATT+TGG + chr6_2:44867526-44867545 None:intergenic 15.0%
!!! CTTAATTTCTTTTCTTTTTT+GGG + chr6_2:44867778-44867797 None:intergenic 15.0%
!!! TCTTAATTTCTTTTCTTTTT+TGG + chr6_2:44867779-44867798 None:intergenic 15.0%
!! AAAATTATGAAATTTGATGA+AGG - chr6_2:44867828-44867847 Msa0918140:intron 15.0%
!!! CATTTTTGAATTAAAACTAA+CGG - chr6_2:44867907-44867926 Msa0918140:intron 15.0%
!! TTTGAAAATTCATAAGTAAT+CGG - chr6_2:44868104-44868123 Msa0918140:intron 15.0%
!! CTTAATTTCATATAACAATT+TGG + chr6_2:44868168-44868187 None:intergenic 15.0%
!! TCAAATAAATGTAAAATCTA+AGG - chr6_2:44868320-44868339 Msa0918140:intron 15.0%
!! CAAATAAATGTAAAATCTAA+GGG - chr6_2:44868321-44868340 Msa0918140:intron 15.0%
!! AATTTCTTAAATCCAATATA+AGG + chr6_2:44869791-44869810 None:intergenic 15.0%
!! TAGTTGTAAAATTGTATCAA+AGG + chr6_2:44866262-44866281 None:intergenic 20.0%
!! TTACAACTATAATCCAATTA+TGG - chr6_2:44866273-44866292 Msa0918140:CDS 20.0%
!!! TTCTTATGATCTTTTTATCT+TGG - chr6_2:44866632-44866651 Msa0918140:CDS 20.0%
!!! ATTTATTTTTAGTATCGCTT+CGG - chr6_2:44866680-44866699 Msa0918140:CDS 20.0%
!!! CGTTTTTTTATTGAACTTAA+CGG + chr6_2:44866779-44866798 None:intergenic 20.0%
!! AAGTTCAATAAAAAAACGTT+AGG - chr6_2:44866781-44866800 Msa0918140:CDS 20.0%
!! ATAAAAAAAATGTTAAAGGC+GGG - chr6_2:44866808-44866827 Msa0918140:CDS 20.0%
!!! AGAAATTGTTTTTCCAAAAA+CGG + chr6_2:44866928-44866947 None:intergenic 20.0%
!!! TTCTTTCTATTTTCCATAAA+TGG + chr6_2:44867121-44867140 None:intergenic 20.0%
!! TTAATGGAGAAATTGTTTAT+GGG + chr6_2:44867381-44867400 None:intergenic 20.0%
!! TTTAATGGAGAAATTGTTTA+TGG + chr6_2:44867382-44867401 None:intergenic 20.0%
!!! ATTTCTAAAAGTACAAGATT+TGG - chr6_2:44867579-44867598 Msa0918140:intron 20.0%
!!! AACAAAAACAACTTTTTCTT+TGG + chr6_2:44867750-44867769 None:intergenic 20.0%
!!! AACAGACTTTTTTTTACTTA+AGG - chr6_2:44867970-44867989 Msa0918140:intron 20.0%
!!! ACAGACTTTTTTTTACTTAA+GGG - chr6_2:44867971-44867990 Msa0918140:intron 20.0%
!! TGATACTAAGTAATAACTTA+AGG - chr6_2:44868001-44868020 Msa0918140:intron 20.0%
!! GATACTAAGTAATAACTTAA+GGG - chr6_2:44868002-44868021 Msa0918140:intron 20.0%
!! ACTATATATCTAAAGATTGA+AGG + chr6_2:44868046-44868065 None:intergenic 20.0%
!! TTAAGTTAAAAGACTAAAGA+TGG - chr6_2:44868410-44868429 Msa0918140:intron 20.0%
!! ATGAGTTAAAAAATTACGTA+TGG - chr6_2:44868511-44868530 Msa0918140:intron 20.0%
!! TGATTATAGTGAAAATCATT+TGG + chr6_2:44868839-44868858 None:intergenic 20.0%
!!! TATTTAATTTGACAAAGCAA+GGG - chr6_2:44869083-44869102 Msa0918140:intron 20.0%
!!! CTCTCAGTATTTTATATATA+AGG + chr6_2:44869158-44869177 None:intergenic 20.0%
!! TAACTTACTACTTTATTACT+TGG + chr6_2:44869545-44869564 None:intergenic 20.0%
!!! AATTGTTGTATTTTTGTTGT+TGG + chr6_2:44870423-44870442 None:intergenic 20.0%
!!! AAATCATCACATCATATTTT+TGG - chr6_2:44870446-44870465 Msa0918140:CDS 20.0%
! AACTATAATCCAATTATGGA+AGG - chr6_2:44866277-44866296 Msa0918140:CDS 25.0%
!! CTTTTCTAATAACATGAACA+GGG + chr6_2:44866309-44866328 None:intergenic 25.0%
! GATGTTACTCTTAAACAATT+TGG - chr6_2:44866448-44866467 Msa0918140:CDS 25.0%
!!! TCTTGGTTTAATTGCTATTT+TGG - chr6_2:44866649-44866668 Msa0918140:CDS 25.0%
!! TTTTATTGAACTTAACGGAA+GGG + chr6_2:44866774-44866793 None:intergenic 25.0%
!! TTTTTATTGAACTTAACGGA+AGG + chr6_2:44866775-44866794 None:intergenic 25.0%
!! TTTTGGATAAAGATTGATGA+AGG + chr6_2:44867011-44867030 None:intergenic 25.0%
!! TGATGTTCTTTCTCTTTTAT+GGG + chr6_2:44867034-44867053 None:intergenic 25.0%
!! TTGATGTTCTTTCTCTTTTA+TGG + chr6_2:44867035-44867054 None:intergenic 25.0%
!! TATTTTCCATAAATGGATGA+AGG + chr6_2:44867114-44867133 None:intergenic 25.0%
! TGTTGCATGAAAAGATTTAT+GGG + chr6_2:44867190-44867209 None:intergenic 25.0%
! TTGTTGCATGAAAAGATTTA+TGG + chr6_2:44867191-44867210 None:intergenic 25.0%
!! AATTATGGGTTTCCTTTTAT+GGG + chr6_2:44867307-44867326 None:intergenic 25.0%
!! AAATTATGGGTTTCCTTTTA+TGG + chr6_2:44867308-44867327 None:intergenic 25.0%
!!! GAAAGGGATGTTTTTTTTAA+TGG + chr6_2:44867397-44867416 None:intergenic 25.0%
!! GCTTATTGTTTGAAATGAAA+GGG + chr6_2:44867413-44867432 None:intergenic 25.0%
!! TTTGAAGATTTTGCTTGATT+TGG + chr6_2:44867435-44867454 None:intergenic 25.0%
! TTCTTCATATTTACTAACAG+TGG - chr6_2:44867477-44867496 Msa0918140:intron 25.0%
! AAAACACAATTCAAAACACA+AGG - chr6_2:44867532-44867551 Msa0918140:intron 25.0%
! AAACACAATTCAAAACACAA+GGG - chr6_2:44867533-44867552 Msa0918140:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG - chr6_2:44867912-44867931 Msa0918140:intron 25.0%
!! AGTTTTTACTCAGGATATAT+AGG + chr6_2:44868202-44868221 None:intergenic 25.0%
!! AAGATGGAATTTTGCAAATT+TGG - chr6_2:44868426-44868445 Msa0918140:intron 25.0%
! AAGATTACAAGTTCTTCTTA+GGG - chr6_2:44868600-44868619 Msa0918140:intron 25.0%
! TTTCTTCTGTGATTAAAGAA+TGG + chr6_2:44868905-44868924 None:intergenic 25.0%
!!! CTATTTAATTTGACAAAGCA+AGG - chr6_2:44869082-44869101 Msa0918140:intron 25.0%
! TCTTTAATTAAGCTTCTCAA+GGG + chr6_2:44869213-44869232 None:intergenic 25.0%
! GAAACAAATAAAGGAATTCA+AGG + chr6_2:44869328-44869347 None:intergenic 25.0%
! CTTTATTACTTGGTACAATT+TGG + chr6_2:44869535-44869554 None:intergenic 25.0%
! TTCTTAAATCCAATATAAGG+CGG + chr6_2:44869788-44869807 None:intergenic 25.0%
! AATTAGAACATAACTCGTTA+AGG - chr6_2:44869807-44869826 Msa0918140:intron 25.0%
! AATAATTAATGAGCGAATGA+AGG + chr6_2:44870050-44870069 None:intergenic 25.0%
CACTTTGAATAACAGAGATT+GGG + chr6_2:44866137-44866156 None:intergenic 30.0%
TCACTTTGAATAACAGAGAT+TGG + chr6_2:44866138-44866157 None:intergenic 30.0%
!! TTTGATGGACTTATCAATTC+AGG + chr6_2:44866172-44866191 None:intergenic 30.0%
!!! AGTTTTATTTCATGAGGAGT+GGG + chr6_2:44866196-44866215 None:intergenic 30.0%
!!! TAGTTTTATTTCATGAGGAG+TGG + chr6_2:44866197-44866216 None:intergenic 30.0%
!!! GAGAGTAGTTTTATTTCATG+AGG + chr6_2:44866202-44866221 None:intergenic 30.0%
! GCTTTTCTAATAACATGAAC+AGG + chr6_2:44866310-44866329 None:intergenic 30.0%
!! GCTTGTGTTTTATTATCCAT+TGG - chr6_2:44866342-44866361 Msa0918140:CDS 30.0%
AAACTTATGGTTGATTGTAC+TGG - chr6_2:44866394-44866413 Msa0918140:CDS 30.0%
GAGAAGATGAAGAATTTAAG+TGG + chr6_2:44866880-44866899 None:intergenic 30.0%
AAGAAGATGAAGACTTTAAG+TGG + chr6_2:44866902-44866921 None:intergenic 30.0%
! TGATGATGATGATGATATGA+AGG + chr6_2:44866988-44867007 None:intergenic 30.0%
! TCTTTCTCTTTTATGGGTTT+TGG + chr6_2:44867028-44867047 None:intergenic 30.0%
! GTTATTTCATGAGAGTGAAA+AGG + chr6_2:44867285-44867304 None:intergenic 30.0%
CTCATGAAATAACCCATAAA+AGG - chr6_2:44867292-44867311 Msa0918140:intron 30.0%
GTGGTTGTTGCATAAATTAT+GGG + chr6_2:44867321-44867340 None:intergenic 30.0%
TGTGGTTGTTGCATAAATTA+TGG + chr6_2:44867322-44867341 None:intergenic 30.0%
! GGCTTATTGTTTGAAATGAA+AGG + chr6_2:44867414-44867433 None:intergenic 30.0%
AAATTTGATGAAGGTGAATG+AGG - chr6_2:44867837-44867856 Msa0918140:intron 30.0%
GAAGATGATGAAGAAGTTAA+AGG - chr6_2:44867859-44867878 Msa0918140:intron 30.0%
! AGTTTATCCCATTCACATTT+TGG + chr6_2:44867939-44867958 None:intergenic 30.0%
! TTGCTTCTTTCTAGAAAACA+CGG - chr6_2:44868261-44868280 Msa0918140:intron 30.0%
TGCGTTAAAATTGTTATCGT+GGG + chr6_2:44868456-44868475 None:intergenic 30.0%
! CATGAATCAAGTTTTCTTAC+CGG - chr6_2:44868550-44868569 Msa0918140:intron 30.0%
CAAGATTACAAGTTCTTCTT+AGG - chr6_2:44868599-44868618 Msa0918140:intron 30.0%
! AAAATCATTTGGAAGTGCAA+GGG + chr6_2:44868828-44868847 None:intergenic 30.0%
GTCTTTAATTAAGCTTCTCA+AGG + chr6_2:44869214-44869233 None:intergenic 30.0%
TCAAGTGCAGAAACAAATAA+AGG + chr6_2:44869337-44869356 None:intergenic 30.0%
!! GATGGTGATTTTAGTGAAAT+TGG - chr6_2:44869501-44869520 Msa0918140:intron 30.0%
TCTTTCAACTCAGTAATTAG+TGG - chr6_2:44869584-44869603 Msa0918140:intron 30.0%
! AAAGAATTTGAAGTTGTTGC+AGG - chr6_2:44869634-44869653 Msa0918140:intron 30.0%
! AAGAATTTGAAGTTGTTGCA+GGG - chr6_2:44869635-44869654 Msa0918140:intron 30.0%
TAATTTCCTTCAAAGACGAA+GGG + chr6_2:44869740-44869759 None:intergenic 30.0%
TTAATTTCCTTCAAAGACGA+AGG + chr6_2:44869741-44869760 None:intergenic 30.0%
ATTTATAACCCGCCTTATAT+TGG - chr6_2:44869776-44869795 Msa0918140:intron 30.0%
TCTTAAATCCAATATAAGGC+GGG + chr6_2:44869787-44869806 None:intergenic 30.0%
! TATTTTTCTCCTCTTTGTGA+TGG + chr6_2:44869921-44869940 None:intergenic 30.0%
TATTATGTTAATCGCGAAGA+CGG + chr6_2:44869946-44869965 None:intergenic 30.0%
AAATGAAACCTCTACATTTG+AGG + chr6_2:44870114-44870133 None:intergenic 30.0%
!!! TTGTATTTTTGTTGTTGGTG+AGG + chr6_2:44870418-44870437 None:intergenic 30.0%
! GCAGATTTATTGGTAATCAA+GGG - chr6_2:44870709-44870728 Msa0918140:CDS 30.0%
!!! GGATTTAGAGATGTTGATTT+TGG - chr6_2:44870787-44870806 Msa0918140:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - chr6_2:44870791-44870810 Msa0918140:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - chr6_2:44870792-44870811 Msa0918140:CDS 30.0%
CTCTGTTATTCAAAGTGAAG+AGG - chr6_2:44866140-44866159 Msa0918140:CDS 35.0%
! CATGAAAGCGTAAAGATTGT+TGG + chr6_2:44866237-44866256 None:intergenic 35.0%
!! GTGTTTTATTATCCATTGGC+AGG - chr6_2:44866346-44866365 Msa0918140:CDS 35.0%
TTTATTATCCATTGGCAGGT+AGG - chr6_2:44866350-44866369 Msa0918140:CDS 35.0%
AGTACCTGAATAAGCAACAA+TGG + chr6_2:44866553-44866572 None:intergenic 35.0%
! TCATCTTCTTCATCCGTTTT+TGG - chr6_2:44866912-44866931 Msa0918140:intron 35.0%
GATGATATGAAGGTTCATGA+AGG + chr6_2:44866978-44866997 None:intergenic 35.0%
!! ATGATGGATGAAGGAGATAA+AGG + chr6_2:44867071-44867090 None:intergenic 35.0%
! GTATGAGATGATGATGATGA+TGG + chr6_2:44867247-44867266 None:intergenic 35.0%
TGCAACAACCACAACAATTT+CGG - chr6_2:44867329-44867348 Msa0918140:intron 35.0%
TGTTTATGCCGAAATTGTTG+TGG + chr6_2:44867340-44867359 None:intergenic 35.0%
TCAAAACACAAGGGTTCAAA+TGG - chr6_2:44867542-44867561 Msa0918140:intron 35.0%
! TGCTTTTCTCTACCAATTTG+AGG - chr6_2:44867660-44867679 Msa0918140:intron 35.0%
TGAACAAATGCACCTCAAAT+TGG + chr6_2:44867675-44867694 None:intergenic 35.0%
GAAAGGACCAAAATGTGAAT+GGG - chr6_2:44867929-44867948 Msa0918140:intron 35.0%
! ACTTCGAGAAGTTTTTACTC+AGG + chr6_2:44868211-44868230 None:intergenic 35.0%
TGAGTAAAAACTTCTCGAAG+TGG - chr6_2:44868210-44868229 Msa0918140:intron 35.0%
! TGCTTCTTTCTAGAAAACAC+GGG - chr6_2:44868262-44868281 Msa0918140:intron 35.0%
CTGCGTTAAAATTGTTATCG+TGG + chr6_2:44868457-44868476 None:intergenic 35.0%
! AAATCATTTGGAAGTGCAAG+GGG + chr6_2:44868827-44868846 None:intergenic 35.0%
! GAAAATCATTTGGAAGTGCA+AGG + chr6_2:44868829-44868848 None:intergenic 35.0%
TACTTATGCGTTTGAGCAAA+TGG + chr6_2:44868872-44868891 None:intergenic 35.0%
GTAAAATGACAGAAGTCTTG+TGG - chr6_2:44869111-44869130 Msa0918140:intron 35.0%
AATTTCCTTCAAAGACGAAG+GGG + chr6_2:44869739-44869758 None:intergenic 35.0%
ATTCGCCCTTGCAAATTAAT+AGG - chr6_2:44869855-44869874 Msa0918140:intron 35.0%
TTCGCCCTTGCAAATTAATA+GGG - chr6_2:44869856-44869875 Msa0918140:intron 35.0%
!! CTGACCCTATTAATTTGCAA+GGG + chr6_2:44869863-44869882 None:intergenic 35.0%
AATTAATAGGGTCAGGAAAG+AGG - chr6_2:44869868-44869887 Msa0918140:intron 35.0%
TTCAACCATACAATGACTGA+CGG - chr6_2:44870145-44870164 Msa0918140:intron 35.0%
TGCTTTAGCAGAAATATCTC+AGG - chr6_2:44870192-44870211 Msa0918140:intron 35.0%
GCTTTAGCAGAAATATCTCA+GGG - chr6_2:44870193-44870212 Msa0918140:intron 35.0%
! AATGTGTTTGCTTTGTTGTC+AGG + chr6_2:44870319-44870338 None:intergenic 35.0%
! CACATTTTCCTTAGATGACA+TGG - chr6_2:44870333-44870352 Msa0918140:intron 35.0%
!!! TATTTTTGTTGTTGGTGAGG+TGG + chr6_2:44870415-44870434 None:intergenic 35.0%
GTTAACCTACTTGTACCAAA+TGG - chr6_2:44870550-44870569 Msa0918140:CDS 35.0%
AGTAACCATTTGGTACAAGT+AGG + chr6_2:44870558-44870577 None:intergenic 35.0%
CTTGTACCAAATGGTTACTA+TGG - chr6_2:44870559-44870578 Msa0918140:CDS 35.0%
TCCTACAGTTGTAATTGCAA+CGG + chr6_2:44870602-44870621 None:intergenic 35.0%
! GGCAGATTTATTGGTAATCA+AGG - chr6_2:44870708-44870727 Msa0918140:CDS 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - chr6_2:44870793-44870812 Msa0918140:CDS 35.0%
! AAACACAAGCGTTTTCGCAA+GGG + chr6_2:44866332-44866351 None:intergenic 40.0%
! AAAACACAAGCGTTTTCGCA+AGG + chr6_2:44866333-44866352 None:intergenic 40.0%
ATGGTTGATTGTACTGGAGA+AGG - chr6_2:44866400-44866419 Msa0918140:CDS 40.0%
GAGCTTATCTATGATGTTCC+TGG - chr6_2:44866505-44866524 Msa0918140:CDS 40.0%
TTTAGCACATCTGAAGAACC+AGG + chr6_2:44866526-44866545 None:intergenic 40.0%
! CACTCCATTGTTGCTTATTC+AGG - chr6_2:44866546-44866565 Msa0918140:CDS 40.0%
ATGTTAAAGGCGGGTCATTA+TGG - chr6_2:44866817-44866836 Msa0918140:CDS 40.0%
ATGAAGGAGAGGATTGAGAT+GGG + chr6_2:44867098-44867117 None:intergenic 40.0%
TCCTCTCCTTCATCCATTTA+TGG - chr6_2:44867105-44867124 Msa0918140:intron 40.0%
TCCATAAATGGATGAAGGAG+AGG + chr6_2:44867109-44867128 None:intergenic 40.0%
GATTTGGATGAAGCAATGAG+AGG - chr6_2:44867595-44867614 Msa0918140:intron 40.0%
GCATTTGTTCACTGTTGGAA+AGG - chr6_2:44867684-44867703 Msa0918140:intron 40.0%
GAAATCACCATCATCACCAA+TGG + chr6_2:44867719-44867738 None:intergenic 40.0%
GGAAAGGACCAAAATGTGAA+TGG - chr6_2:44867928-44867947 Msa0918140:intron 40.0%
! ATCAAGTTTTCTTACCGGTG+AGG - chr6_2:44868555-44868574 Msa0918140:intron 40.0%
!! TGAGGTTCTAGATGCATACA+TGG - chr6_2:44868573-44868592 Msa0918140:intron 40.0%
!! GAGGTTCTAGATGCATACAT+GGG - chr6_2:44868574-44868593 Msa0918140:intron 40.0%
!! AGGTTCTAGATGCATACATG+GGG - chr6_2:44868575-44868594 Msa0918140:intron 40.0%
GAGAGAGAGGAAAATTCTAC+TGG - chr6_2:44868773-44868792 Msa0918140:intron 40.0%
GACTATTCTCGGTTTATGAG+AGG + chr6_2:44868801-44868820 None:intergenic 40.0%
TCAACGACAATATCCGATTG+AGG + chr6_2:44869249-44869268 None:intergenic 40.0%
! GTTTGTCGTCTTCTGAAGAA+AGG + chr6_2:44869401-44869420 None:intergenic 40.0%
TTCTTCAGAAGACGACAAAC+AGG - chr6_2:44869401-44869420 Msa0918140:intron 40.0%
! CAATGAAGCATCTGAAGTCT+TGG + chr6_2:44869482-44869501 None:intergenic 40.0%
GACTTCAGATGCTTCATTGA+TGG - chr6_2:44869483-44869502 Msa0918140:intron 40.0%
GTAAGTTAATCGTCTCCACA+TGG - chr6_2:44869557-44869576 Msa0918140:intron 40.0%
GAGTTGAAAGACAATCCATG+TGG + chr6_2:44869575-44869594 None:intergenic 40.0%
ACCAAACCTCATCTCGTATT+GGG + chr6_2:44869675-44869694 None:intergenic 40.0%
AACCAAACCTCATCTCGTAT+TGG + chr6_2:44869676-44869695 None:intergenic 40.0%
AAAGACGAAGGGGGAATTAA+AGG + chr6_2:44869729-44869748 None:intergenic 40.0%
ATTTCCTTCAAAGACGAAGG+GGG + chr6_2:44869738-44869757 None:intergenic 40.0%
CATAACTCGTTAAGGCTTTG+TGG - chr6_2:44869815-44869834 Msa0918140:intron 40.0%
! TAATTTGCAAGGGCGAATTG+CGG + chr6_2:44869853-44869872 None:intergenic 40.0%
!! CCTGACCCTATTAATTTGCA+AGG + chr6_2:44869864-44869883 None:intergenic 40.0%
CCTTGCAAATTAATAGGGTC+AGG - chr6_2:44869861-44869880 Msa0918140:intron 40.0%
CTGAAATTGTAACCATGTGC+AGG - chr6_2:44870081-44870100 Msa0918140:intron 40.0%
TAGAATTTCTCTGCACCACA+CGG + chr6_2:44870242-44870261 None:intergenic 40.0%
CAGAGAAATTCTAAGCGCAA+GGG - chr6_2:44870249-44870268 Msa0918140:intron 40.0%
! TTTGCTTTGTTGTCAGGTTC+TGG + chr6_2:44870313-44870332 None:intergenic 40.0%
TTGGACCAAAGAAGAAAGCA+TGG + chr6_2:44870363-44870382 None:intergenic 40.0%
TGGAAGTAGAGAACGAATTG+CGG + chr6_2:44870395-44870414 None:intergenic 40.0%
GCGTTACCATAGTAACCATT+TGG + chr6_2:44870568-44870587 None:intergenic 40.0%
CCTACAGTTGTAATTGCAAC+GGG + chr6_2:44870601-44870620 None:intergenic 40.0%
AAATCCAGTGCATACGTCAA+CGG + chr6_2:44870640-44870659 None:intergenic 40.0%
CATTGAACGCATGTACTCTT+CGG + chr6_2:44870689-44870708 None:intergenic 40.0%
GCGTTCAATGGCAGATTTAT+TGG - chr6_2:44870699-44870718 Msa0918140:CDS 40.0%
GCATTCGCTGTAGTAAAATG+AGG + chr6_2:44870739-44870758 None:intergenic 40.0%
!! TCATGAGGAGTGGGTTTTGA+TGG + chr6_2:44866187-44866206 None:intergenic 45.0%
GGGTCTTTGCCTTCCATAAT+TGG + chr6_2:44866289-44866308 None:intergenic 45.0%
TCAACCATAAGTTTCCTGCC+AGG + chr6_2:44866388-44866407 None:intergenic 45.0%
TCATCCTCCATTTCCATGCT+TGG - chr6_2:44866480-44866499 Msa0918140:CDS 45.0%
CATCCTCCATTTCCATGCTT+GGG - chr6_2:44866481-44866500 Msa0918140:CDS 45.0%
TAGATAAGCTCACCCAAGCA+TGG + chr6_2:44866496-44866515 None:intergenic 45.0%
!! ATGGGGAAGATGATGGATGA+AGG + chr6_2:44867080-44867099 None:intergenic 45.0%
GATTGAGATGGGGAAGATGA+TGG + chr6_2:44867087-44867106 None:intergenic 45.0%
TGAAGGAGAGGATTGAGATG+GGG + chr6_2:44867097-44867116 None:intergenic 45.0%
GATGAAGGAGAGGATTGAGA+TGG + chr6_2:44867099-44867118 None:intergenic 45.0%
ATGAGAGGCTAAGAACGAAG+AGG - chr6_2:44867610-44867629 Msa0918140:intron 45.0%
GAGGTGCATTTGTTCACTGT+TGG - chr6_2:44867679-44867698 Msa0918140:intron 45.0%
GGAAAGGTTGAAGATGCCAT+TGG - chr6_2:44867700-44867719 Msa0918140:intron 45.0%
!! GAAGATGCCATTGGTGATGA+TGG - chr6_2:44867709-44867728 Msa0918140:intron 45.0%
CGAACACATATTCGTCAACC+TGG + chr6_2:44868373-44868392 None:intergenic 45.0%
! GTATGCATCTAGAACCTCAC+CGG + chr6_2:44868572-44868591 None:intergenic 45.0%
CGTTGAGATGTTGCCTCAAT+CGG - chr6_2:44869233-44869252 Msa0918140:intron 45.0%
! TGAAGTCTTGGAGGCTCTAA+AGG + chr6_2:44869470-44869489 None:intergenic 45.0%
! TGAAGCATCTGAAGTCTTGG+AGG + chr6_2:44869479-44869498 None:intergenic 45.0%
AACCTCATCTCGTATTGGGT+AGG + chr6_2:44869671-44869690 None:intergenic 45.0%
ACCCAATACGAGATGAGGTT+TGG - chr6_2:44869671-44869690 Msa0918140:intron 45.0%
AATTCCCCCTTCGTCTTTGA+AGG - chr6_2:44869731-44869750 Msa0918140:intron 45.0%
AATTTGCAAGGGCGAATTGC+GGG + chr6_2:44869852-44869871 None:intergenic 45.0%
GTAACACGCCTCAAATGTAG+AGG - chr6_2:44870103-44870122 Msa0918140:intron 45.0%
CTGATCCGTCAGTCATTGTA+TGG + chr6_2:44870153-44870172 None:intergenic 45.0%
! CATACAATGACTGACGGATC+AGG - chr6_2:44870151-44870170 Msa0918140:intron 45.0%
AGAATTTCTCTGCACCACAC+GGG + chr6_2:44870241-44870260 None:intergenic 45.0%
GCAGAGAAATTCTAAGCGCA+AGG - chr6_2:44870248-44870267 Msa0918140:intron 45.0%
!! ATGGTGGACCATGTCATCTA+AGG + chr6_2:44870344-44870363 None:intergenic 45.0%
GTCCACCATGCTTTCTTCTT+TGG - chr6_2:44870355-44870374 Msa0918140:intron 45.0%
! GACCAAAGAAGAAAGCATGG+TGG + chr6_2:44870360-44870379 None:intergenic 45.0%
TTTCTTCTTTGGTCCAACCG+AGG - chr6_2:44870366-44870385 Msa0918140:intron 45.0%
CCCGTTGCAATTACAACTGT+AGG - chr6_2:44870598-44870617 Msa0918140:CDS 45.0%
AATCCAGTGCATACGTCAAC+GGG + chr6_2:44870639-44870658 None:intergenic 45.0%
! CGAAGAGTACATGCGTTCAA+TGG - chr6_2:44870687-44870706 Msa0918140:CDS 45.0%
TGGTTGGGGAAAGCTGTTTA+TGG - chr6_2:44870807-44870826 Msa0918140:CDS 45.0%
TTGGGGAAAGCTGTTTATGG+AGG - chr6_2:44870810-44870829 Msa0918140:CDS 45.0%
!! TTTAATAAAAAAAATGTTAA+AGG - chr6_2:44866804-44866823 Msa0918140:CDS 5.0%
!!! TTTCTAATTTTTTTATTAAA+AGG - chr6_2:44868293-44868312 Msa0918140:intron 5.0%
ATCCATTGGCAGGTAGGTTG+AGG - chr6_2:44866356-44866375 Msa0918140:CDS 50.0%
! TCCATTGGCAGGTAGGTTGA+GGG - chr6_2:44866357-44866376 Msa0918140:CDS 50.0%
AGGTCCTGGCAGGAAACTTA+TGG - chr6_2:44866381-44866400 Msa0918140:CDS 50.0%
TCACCCAAGCATGGAAATGG+AGG + chr6_2:44866487-44866506 None:intergenic 50.0%
AGCTCACCCAAGCATGGAAA+TGG + chr6_2:44866490-44866509 None:intergenic 50.0%
! CAACCTGGTAGCGAATGTGT+TGG + chr6_2:44868358-44868377 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr6_2:44868690-44868709 Msa0918140:intron 50.0%
GCAAGGGGCTAGACTATTCT+CGG + chr6_2:44868812-44868831 None:intergenic 50.0%
GTCCTACCCAATACGAGATG+AGG - chr6_2:44869666-44869685 Msa0918140:intron 50.0%
ATTTGCAAGGGCGAATTGCG+GGG + chr6_2:44869851-44869870 None:intergenic 50.0%
TAGGGTCAGGAAAGAGGAGA+AGG - chr6_2:44869874-44869893 Msa0918140:intron 50.0%
! CCTCTTTGTGATGGTGACGT+GGG + chr6_2:44869912-44869931 None:intergenic 50.0%
! TCCTCTTTGTGATGGTGACG+TGG + chr6_2:44869913-44869932 None:intergenic 50.0%
AACCTTCTATCTCACCCGTG+TGG - chr6_2:44870224-44870243 Msa0918140:intron 50.0%
CGATGAGTACACGTCACTCT+TGG + chr6_2:44870280-44870299 None:intergenic 50.0%
AGAACGAATTGCGGCTACCT+CGG + chr6_2:44870386-44870405 None:intergenic 50.0%
AAACCCGTTGACGTATGCAC+TGG - chr6_2:44870633-44870652 Msa0918140:CDS 50.0%
CTGTCTGATGTTACACGTGC+TGG - chr6_2:44870766-44870785 Msa0918140:CDS 50.0%
TCCCTCAACCTACCTGCCAA+TGG + chr6_2:44866361-44866380 None:intergenic 55.0%
! TTGGCAGGTAGGTTGAGGGA+AGG - chr6_2:44866361-44866380 Msa0918140:CDS 55.0%
CTGCCAACACATTCGCTACC+AGG - chr6_2:44868352-44868371 Msa0918140:intron 55.0%
GCTGCTGACGTGTTCTTCAG+AGG - chr6_2:44869437-44869456 Msa0918140:intron 55.0%
! TTGTGATGGTGACGTGGGAG+AGG + chr6_2:44869907-44869926 None:intergenic 55.0%
CCCACGTCACCATCACAAAG+AGG - chr6_2:44869909-44869928 Msa0918140:intron 55.0%
TGAGGCGTGTTACCTGCACA+TGG + chr6_2:44870096-44870115 None:intergenic 55.0%
CACCACACGGGTGAGATAGA+AGG + chr6_2:44870229-44870248 None:intergenic 55.0%
! GGTAGGTTGAGGGAAGGTCC+TGG - chr6_2:44866367-44866386 Msa0918140:CDS 60.0%
CGAATTGCGGCTACCTCGGT+TGG + chr6_2:44870382-44870401 None:intergenic 60.0%
GGTTGAGGGAAGGTCCTGGC+AGG - chr6_2:44866371-44866390 Msa0918140:CDS 65.0%
GGTGACGTGGGAGAGGTTGC+TGG + chr6_2:44869900-44869919 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 44866130 44870837 44866130 ID=Msa0918140;Name=Msa0918140
chr6_2 mRNA 44866130 44870837 44866130 ID=Msa0918140-mRNA-1;Parent=Msa0918140;Name=Msa0918140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|390
chr6_2 exon 44870400 44870837 44870400 ID=Msa0918140-mRNA-1:exon:7065;Parent=Msa0918140-mRNA-1
chr6_2 exon 44866130 44866864 44866130 ID=Msa0918140-mRNA-1:exon:7064;Parent=Msa0918140-mRNA-1
chr6_2 CDS 44870400 44870837 44870400 ID=Msa0918140-mRNA-1:cds;Parent=Msa0918140-mRNA-1
chr6_2 CDS 44866130 44866864 44866130 ID=Msa0918140-mRNA-1:cds;Parent=Msa0918140-mRNA-1
Gene Sequence

>Msa0918140

ATGGCCCAATCTCTGTTATTCAAAGTGAAGAGGAGTGAACCTGAATTGATAAGTCCATCAAAACCCACTCCTCATGAAATAAAACTACTCTCAGACATAGATGACCAACAATCTTTACGCTTTCATGTTCCTTTGATACAATTTTACAACTATAATCCAATTATGGAAGGCAAAGACCCTGTTCATGTTATTAGAAAAGCCCTTGCGAAAACGCTTGTGTTTTATTATCCATTGGCAGGTAGGTTGAGGGAAGGTCCTGGCAGGAAACTTATGGTTGATTGTACTGGAGAAGGTGTTTTGTTTATTGAAGCTGATGCTGATGTTACTCTTAAACAATTTGGTGATGCACTTCATCCTCCATTTCCATGCTTGGGTGAGCTTATCTATGATGTTCCTGGTTCTTCAGATGTGCTAAACACTCCATTGTTGCTTATTCAGGTAACACGCCTCAAATGTAGAGGTTTCATTTTTGCTCTTCGTTTCAACCATACAATGACTGACGGATCAGGTATAGTTCAATTCATGAGTGCTTTAGCAGAAATATCTCAGGGTATGAGAAAACCTTCTATCTCACCCGTGTGGTGCAGAGAAATTCTAAGCGCAAGGGATTCACCAAGAGTGACGTGTACTCATCGTGAATACGAACCAGAACCTGACAACAAAGCAAACACATTTTCCTTAGATGACATGGTCCACCATGCTTTCTTCTTTGGTCCAACCGAGGTAGCCGCAATTCGTTCTCTACTTCCACCTCACCAACAACAAAAATACAACAATTTTGAAATCATCACATCATATTTTTGGCGTTGTCGTACACTAGCATTACAACTAGATACTAACGAAGAAGTTCGCATAATCTGCATTGTCGATGCACGTAGCAAATTTGTTAACCTACTTGTACCAAATGGTTACTATGGTAACGCTATAGCGCTTCCCGTTGCAATTACAACTGTAGGAAAACTAATTGAAAACCCGTTGACGTATGCACTGGATTTAGTTAAGAAAGCAAAAGCTAATGTCACCGAAGAGTACATGCGTTCAATGGCAGATTTATTGGTAATCAAGGGTAGACCTCATTTTACTACAGCGAATGCTTGTTTACTGTCTGATGTTACACGTGCTGGATTTAGAGATGTTGATTTTGGTTGGGGAAAGCTGTTTATGGAGGATTAG
Protein sequence

>Msa0918140

MAQSLLFKVKRSEPELISPSKPTPHEIKLLSDIDDQQSLRFHVPLIQFYNYNPIMEGKDPVHVIRKALAKTLVFYYPLAGRLREGPGRKLMVDCTGEGVLFIEADADVTLKQFGDALHPPFPCLGELIYDVPGSSDVLNTPLLLIQVTRLKCRGFIFALRFNHTMTDGSGIVQFMSALAEISQGMRKPSISPVWCREILSARDSPRVTCTHREYEPEPDNKANTFSLDDMVHHAFFFGPTEVAAIRSLLPPHQQQKYNNFEIITSYFWRCRTLALQLDTNEEVRIICIVDARSKFVNLLVPNGYYGNAIALPVAITTVGKLIENPLTYALDLVKKAKANVTEEYMRSMADLLVIKGRPHFTTANACLLSDVTRAGFRDVDFGWGKLFMED*