AlfalfaGEDB | Msa0890240

M. sativa cultivar zhongmu-4 / Msa0890240

KEGG: K01915
GO: GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666
PFAM: PF00120.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890240	XP_013441931.1	82.609	299	5	1	5	256	156	454	2.10e-174	498

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890240	sp\|Q86B00\|GLNA1_DICDI	36.404	228	142	2	13	239	207	432	7.31e-47	166

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890240	Q9SC91	82.609	299	5	1	5	256	156	454	1.00e-174	498

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0890240	Msa0918150	0.826360	2.830666e-54	-8.615850e-47
Msa0890240	Msa0954980	0.806931	6.473733e-50	-8.615850e-47
Msa0890240	Msa0990490	0.844210	8.706086e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890240	MtrunA17_Chr6g0471351	82.060	301	5	1	5	256	156	456	2.97e-178	498
Msa0890240	MtrunA17_Chr1g0180151	75.585	299	26	1	5	256	357	655	7.75e-162	463
Msa0890240	MtrunA17_Chr3g0091091	71.906	299	35	3	5	256	178	474	2.67e-151	430
Msa0890240	MtrunA17_Chr1g0180001	69.900	299	42	2	5	256	152	449	3.08e-148	421
Msa0890240	MtrunA17_Chr1g0179971	83.200	125	21	0	42	166	1	125	5.47e-74	222
Msa0890240	MtrunA17_Chr1g0180211	60.417	144	10	1	160	256	12	155	2.70e-51	164
Msa0890240	MtrunA17_Chr1g0180191	87.097	93	12	0	5	97	543	635	3.13e-50	174
Msa0890240	MtrunA17_Chr3g0091051	75.000	68	15	2	160	227	27	92	1.10e-28	104
Msa0890240	MtrunA17_Chr1g0180201	87.500	40	5	0	122	161	1	40	5.38e-17	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0890240	AT3G53180.1	58.472	301	76	1	5	256	552	852	1.28e-121	366

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Find 61 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCAGGAGTTCCAGG+AGG	0.759604	6_1:-62865685	None:intergenic
AAAGTATGGAATATCAACTT+TGG	0.394810	6_1:+62865361	Msa0890240:CDS
AAATTACTCGCAAAACCATC+AGG	0.503241	6_1:-62865697	None:intergenic
AACTTTGGGAAAAGAGTTTA+TGG	0.207112	6_1:+62865376	Msa0890240:CDS
AAGGTACACATTAGATGATC+TGG	0.339749	6_1:+62865265	Msa0890240:intron
AAGTAACTTCACGAAGTATT+GGG	0.344458	6_1:-62862994	None:intergenic
AAGTATGGAATATCAACTTT+GGG	0.428984	6_1:+62865362	Msa0890240:CDS
AATGCTGACGAGGAGCAGTA+AGG	0.514992	6_1:-62862959	None:intergenic
AATGGGAATTCCAGTAGAAC+AGG	0.438731	6_1:+62863030	Msa0890240:CDS
ACAGGGAAGGGAAAGAAGAA+TGG	0.516213	6_1:+62862918	Msa0890240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTTCTGCTTTACATTCAA+TGG	+	chr6_1:62863012-62863031	Msa0890240:CDS	30.0%
ACTTCTGCTTTACATTCAAT+GGG	+	chr6_1:62863013-62863032	Msa0890240:CDS	30.0%
GATAAAAAGCAAAGAAAGAC+AGG	+	chr6_1:62863401-62863420	Msa0890240:intron	30.0%
TGCCATAATATACCAAAAAC+AGG	+	chr6_1:62863749-62863768	Msa0890240:intron	30.0%
GGAAAATGTAAGTGTTTGTT+TGG	-	chr6_1:62863920-62863939	None:intergenic	30.0%
GTGTAGTTTAGATTGTGAAA+AGG	+	chr6_1:62864239-62864258	Msa0890240:intron	30.0%
TTAAATAAGTGGCTATGATG+TGG	+	chr6_1:62864265-62864284	Msa0890240:intron	30.0%
AACTCCATACAGCTAAATTT+GGG	-	chr6_1:62865014-62865033	None:intergenic	30.0%
AAACTCCATACAGCTAAATT+TGG	-	chr6_1:62865015-62865034	None:intergenic	30.0%
CAGATGCCATAAATACATTT+CGG	-	chr6_1:62865331-62865350	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	62862908	62866455	62862908	ID=Msa0890240;Name=Msa0890240
chr6_1	mRNA	62862908	62866455	62862908	ID=Msa0890240-mRNA-1;Parent=Msa0890240;Name=Msa0890240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.75\|0.4\|1\|0.75\|0.6\|5\|0\|256
chr6_1	exon	62862908	62863051	62862908	ID=Msa0890240-mRNA-1:exon:11494;Parent=Msa0890240-mRNA-1
chr6_1	exon	62864046	62864191	62864046	ID=Msa0890240-mRNA-1:exon:11495;Parent=Msa0890240-mRNA-1
chr6_1	exon	62865268	62865456	62865268	ID=Msa0890240-mRNA-1:exon:11496;Parent=Msa0890240-mRNA-1
chr6_1	exon	62865597	62865825	62865597	ID=Msa0890240-mRNA-1:exon:11497;Parent=Msa0890240-mRNA-1
chr6_1	exon	62866396	62866455	62866396	ID=Msa0890240-mRNA-1:exon:11498;Parent=Msa0890240-mRNA-1
chr6_1	CDS	62862908	62863051	62862908	ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1
chr6_1	CDS	62864046	62864191	62864046	ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1
chr6_1	CDS	62865268	62865456	62865268	ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1
chr6_1	CDS	62865597	62865825	62865597	ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1
chr6_1	CDS	62866396	62866455	62866396	ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1

Gene Sequence

>Msa0890240

AACCAACCATACAGGGAAGGGAAAGAAGAATGGATACAATTTGACTCGACCCCTTACTGCTCCTCGTCAGCATTTGACGTTGCTTCCCCAATACTTCGTGAAGTTACTTCTGCTTTACATTCAATGGGAATTCCAGTAGAACAGTTACATGCAGAAGCTGGAAAAGGTCAATTTGAGCTGGTTTTGGGACATATGGTTTGTACAAAATCTTCAGACAACTTAGTTTACACACGTGAAACTGTTAGGGCAATTGCTAGAAAACATGGCTTGCTTGCTACTTTTGTTCCAAAGTACACATTAGATGATCTGGGTTCTGGATGCCATGTTCATCTAAGCTTGTGGCAGAATGGCCGAAATGTATTTATGGCATCTGATGAATCATCAAAGTATGGAATATCAACTTTGGGAAAAGAGTTTATGGCTGGAGTTCTATATCATCTTCCTTCTATTTTGTCTTTTGTGGCACCACTTCCTATCAGTTATGATCGATTGCAGCCGAACACATGGAGTGGTGCATACATGTTTTGGGGAAATGAAAATAGGGAGGCTCCATTGCGAGCTTCATCTCCTCCTGGAACTCCTGATGGTTTTGCGAGTAATTTTGAGTTTAAATCATTTGATGGTTCTGCAAACCCATACTTAGGCTTATCTGCTATAATTGCTGCTGGCATTGATGGTCTACGTAGGCATCTTTCACTTCCTGAACCTGCTGAAATTGATCATTACTCGAAGAACAAGGATGCATACAAGCAACTCATACACCGTTAT

Protein sequence

>Msa0890240

NQPYREGKEEWIQFDSTPYCSSSAFDVASPILREVTSALHSMGIPVEQLHAEAGKGQFELVLGHMVCTKSSDNLVYTRETVRAIARKHGLLATFVPKYTLDDLGSGCHVHLSLWQNGRNVFMASDESSKYGISTLGKEFMAGVLYHLPSILSFVAPLPISYDRLQPNTWSGAYMFWGNENREAPLRASSPPGTPDGFASNFEFKSFDGSANPYLGLSAIIAAGIDGLRRHLSLPEPAEIDHYSKNKDAYKQLIHRY