Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890240 | XP_013441931.1 | 82.609 | 299 | 5 | 1 | 5 | 256 | 156 | 454 | 2.10e-174 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890240 | sp|Q86B00|GLNA1_DICDI | 36.404 | 228 | 142 | 2 | 13 | 239 | 207 | 432 | 7.31e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890240 | Q9SC91 | 82.609 | 299 | 5 | 1 | 5 | 256 | 156 | 454 | 1.00e-174 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0890240 | Msa0918150 | 0.826360 | 2.830666e-54 | -8.615850e-47 |
| Msa0890240 | Msa0954980 | 0.806931 | 6.473733e-50 | -8.615850e-47 |
| Msa0890240 | Msa0990490 | 0.844210 | 8.706086e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890240 | MtrunA17_Chr6g0471351 | 82.060 | 301 | 5 | 1 | 5 | 256 | 156 | 456 | 2.97e-178 | 498 |
| Msa0890240 | MtrunA17_Chr1g0180151 | 75.585 | 299 | 26 | 1 | 5 | 256 | 357 | 655 | 7.75e-162 | 463 |
| Msa0890240 | MtrunA17_Chr3g0091091 | 71.906 | 299 | 35 | 3 | 5 | 256 | 178 | 474 | 2.67e-151 | 430 |
| Msa0890240 | MtrunA17_Chr1g0180001 | 69.900 | 299 | 42 | 2 | 5 | 256 | 152 | 449 | 3.08e-148 | 421 |
| Msa0890240 | MtrunA17_Chr1g0179971 | 83.200 | 125 | 21 | 0 | 42 | 166 | 1 | 125 | 5.47e-74 | 222 |
| Msa0890240 | MtrunA17_Chr1g0180211 | 60.417 | 144 | 10 | 1 | 160 | 256 | 12 | 155 | 2.70e-51 | 164 |
| Msa0890240 | MtrunA17_Chr1g0180191 | 87.097 | 93 | 12 | 0 | 5 | 97 | 543 | 635 | 3.13e-50 | 174 |
| Msa0890240 | MtrunA17_Chr3g0091051 | 75.000 | 68 | 15 | 2 | 160 | 227 | 27 | 92 | 1.10e-28 | 104 |
| Msa0890240 | MtrunA17_Chr1g0180201 | 87.500 | 40 | 5 | 0 | 122 | 161 | 1 | 40 | 5.38e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890240 | AT3G53180.1 | 58.472 | 301 | 76 | 1 | 5 | 256 | 552 | 852 | 1.28e-121 | 366 |
Find 61 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTGGGAAAAGAGTTTA+TGG | 0.207112 | 6_1:+62865376 | Msa0890240:CDS |
| AGGTCAATTTGAGCTGGTTT+TGG | 0.272216 | 6_1:+62864066 | Msa0890240:CDS |
| TTGTGGCACCACTTCCTATC+AGG | 0.276679 | 6_1:+62865435 | Msa0890240:CDS |
| GAATGGCCGAAATGTATTTA+TGG | 0.277709 | 6_1:+62865322 | Msa0890240:CDS |
| TACTTCTGCTTTACATTCAA+TGG | 0.297886 | 6_1:+62863012 | Msa0890240:CDS |
| TTTACACACGTGAAACTGTT+AGG | 0.307448 | 6_1:+62864125 | Msa0890240:CDS |
| TCTTCTTTCCCTTCCCTGTA+TGG | 0.319609 | 6_1:-62862914 | None:intergenic |
| TTTGAGTTTAAATCATTTGA+TGG | 0.321281 | 6_1:+62865718 | Msa0890240:CDS |
| ATAGCAGATAAGCCTAAGTA+TGG | 0.330191 | 6_1:-62865751 | None:intergenic |
| AAGGTACACATTAGATGATC+TGG | 0.339749 | 6_1:+62865265 | Msa0890240:intron |
| AAGTAACTTCACGAAGTATT+GGG | 0.344458 | 6_1:-62862994 | None:intergenic |
| TCTGATGAATCATCAAAGTA+TGG | 0.348059 | 6_1:+62865347 | Msa0890240:CDS |
| ATAATTGCTGCTGGCATTGA+TGG | 0.367852 | 6_1:+62865772 | Msa0890240:CDS |
| ATTATCTTACCAACAGGTTC+AGG | 0.370199 | 6_1:-62865817 | None:intergenic |
| AAAGTATGGAATATCAACTT+TGG | 0.394810 | 6_1:+62865361 | Msa0890240:CDS |
| CTTTCCCTTCCCTGTATGGT+TGG | 0.412029 | 6_1:-62862910 | None:intergenic |
| GGAGTGGTGCATACATGTTT+TGG | 0.412064 | 6_1:+62865623 | Msa0890240:CDS |
| CAGATGCCATAAATACATTT+CGG | 0.416064 | 6_1:-62865328 | None:intergenic |
| ACATTAGATGATCTGGGTTC+TGG | 0.424644 | 6_1:+62865272 | Msa0890240:CDS |
| AAGTATGGAATATCAACTTT+GGG | 0.428984 | 6_1:+62865362 | Msa0890240:CDS |
| AATGGGAATTCCAGTAGAAC+AGG | 0.438731 | 6_1:+62863030 | Msa0890240:CDS |
| ACTTCTGCTTTACATTCAAT+GGG | 0.441181 | 6_1:+62863013 | Msa0890240:CDS |
| GAAGTAACTTCACGAAGTAT+TGG | 0.442468 | 6_1:-62862995 | None:intergenic |
| GCCACAAAAGACAAAATAGA+AGG | 0.456760 | 6_1:-62865419 | None:intergenic |
| TTGGGAAAAGAGTTTATGGC+TGG | 0.478023 | 6_1:+62865380 | Msa0890240:CDS |
| CATGAAGAAACCAACCATAC+AGG | 0.478637 | 6_1:+62862900 | None:intergenic |
| GCAAAACCATCAGGAGTTCC+AGG | 0.481545 | 6_1:-62865688 | None:intergenic |
| TTGCAGTTACATGCAGAAGC+TGG | 0.487892 | 6_1:+62864040 | Msa0890240:intron |
| TCTCCTCCTGGAACTCCTGA+TGG | 0.488319 | 6_1:+62865682 | Msa0890240:CDS |
| TTGCGAGCTTCATCTCCTCC+TGG | 0.498368 | 6_1:+62865670 | Msa0890240:CDS |
| AAATTACTCGCAAAACCATC+AGG | 0.503241 | 6_1:-62865697 | None:intergenic |
| TGGAAAAGGTCAATTTGAGC+TGG | 0.509856 | 6_1:+62864060 | Msa0890240:CDS |
| ATGCTGACGAGGAGCAGTAA+GGG | 0.511270 | 6_1:-62862958 | None:intergenic |
| AATGCTGACGAGGAGCAGTA+AGG | 0.514992 | 6_1:-62862959 | None:intergenic |
| ACAGGGAAGGGAAAGAAGAA+TGG | 0.516213 | 6_1:+62862918 | Msa0890240:CDS |
| TTACACACGTGAAACTGTTA+GGG | 0.524372 | 6_1:+62864126 | Msa0890240:CDS |
| TTATCTGCTATAATTGCTGC+TGG | 0.535019 | 6_1:+62865763 | Msa0890240:CDS |
| CATCTAAGCTTGTGGCAGAA+TGG | 0.537152 | 6_1:+62865305 | Msa0890240:CDS |
| TTACATGCAGAAGCTGGAAA+AGG | 0.542608 | 6_1:+62864046 | Msa0890240:CDS |
| ATAGATAGCAGAAACCTGAT+AGG | 0.545554 | 6_1:-62865449 | None:intergenic |
| TATGCACCACTCCATGTGTT+CGG | 0.546842 | 6_1:-62865613 | None:intergenic |
| ATCGATTGCAGCCGAACACA+TGG | 0.554491 | 6_1:+62865602 | Msa0890240:CDS |
| AGCAGAAACCTGATAGGAAG+TGG | 0.556077 | 6_1:-62865443 | None:intergenic |
| AGGTACACATTAGATGATCT+GGG | 0.560991 | 6_1:+62865266 | Msa0890240:intron |
| GGTTCTGCAAACCCATACTT+AGG | 0.580085 | 6_1:+62865739 | Msa0890240:CDS |
| ATGAAGAAACCAACCATACA+GGG | 0.586977 | 6_1:+62862901 | None:intergenic |
| AGGGCAATTGCTAGAAAACA+TGG | 0.595938 | 6_1:+62864145 | Msa0890240:CDS |
| TAGCAGATAAGCCTAAGTAT+GGG | 0.608694 | 6_1:-62865750 | None:intergenic |
| GAAACCAACCATACAGGGAA+GGG | 0.609679 | 6_1:+62862906 | None:intergenic |
| AGTAACTTCACGAAGTATTG+GGG | 0.615657 | 6_1:-62862993 | None:intergenic |
| GCCATGTTCATCTAAGCTTG+TGG | 0.618097 | 6_1:+62865297 | Msa0890240:CDS |
| GGAGGAGATGAAGCTCGCAA+TGG | 0.620695 | 6_1:-62865667 | None:intergenic |
| AGAAACCAACCATACAGGGA+AGG | 0.634459 | 6_1:+62862905 | None:intergenic |
| TGATCATTACTCGAAGAACA+AGG | 0.636530 | 6_1:+62866404 | Msa0890240:CDS |
| AGCAACGTCAAATGCTGACG+AGG | 0.637862 | 6_1:-62862969 | None:intergenic |
| TGCTGACGAGGAGCAGTAAG+GGG | 0.638683 | 6_1:-62862957 | None:intergenic |
| GCCACAAGCTTAGATGAACA+TGG | 0.656206 | 6_1:-62865298 | None:intergenic |
| TTGCAGCCGAACACATGGAG+TGG | 0.664649 | 6_1:+62865607 | Msa0890240:CDS |
| CTGGCATTGATGGTCTACGT+AGG | 0.670844 | 6_1:+62865782 | Msa0890240:CDS |
| TTGGGGAAATGAAAATAGGG+AGG | 0.680084 | 6_1:+62865642 | Msa0890240:CDS |
| AAACCATCAGGAGTTCCAGG+AGG | 0.759604 | 6_1:-62865685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTAAAGATTTAAAA+TGG | - | chr6_1:62863874-62863893 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAATCAGAAAAT+TGG | - | chr6_1:62863975-62863994 | None:intergenic | 10.0% |
| !!! | TTTTTTAAATACTTTGAATT+TGG | - | chr6_1:62864487-62864506 | None:intergenic | 10.0% |
| !!! | GCAAATTTTTAAAATTTTAA+TGG | + | chr6_1:62864542-62864561 | Msa0890240:intron | 10.0% |
| !!! | TTGTTAATATAATCTCATTT+TGG | - | chr6_1:62863315-62863334 | None:intergenic | 15.0% |
| !!! | TATATATTTTATACTTGCAA+TGG | - | chr6_1:62864218-62864237 | None:intergenic | 15.0% |
| !!! | TTGTGAATTTTGAAAAATAT+AGG | + | chr6_1:62864572-62864591 | Msa0890240:intron | 15.0% |
| !!! | TGTGAATTTTGAAAAATATA+GGG | + | chr6_1:62864573-62864592 | Msa0890240:intron | 15.0% |
| !!! | TGATGTAATGTAATTTTATA+TGG | - | chr6_1:62864837-62864856 | None:intergenic | 15.0% |
| !!! | AATTTATAATTTCAAGTGTT+TGG | + | chr6_1:62864921-62864940 | Msa0890240:intron | 15.0% |
| !!! | TATTTTTTTTTTCAACATCA+CGG | + | chr6_1:62865131-62865150 | Msa0890240:intron | 15.0% |
| !! | AGAAAAAAGAAACATAATTT+AGG | - | chr6_1:62865488-62865507 | None:intergenic | 15.0% |
| !! | GTTTCATTAAAAGATAATAA+GGG | - | chr6_1:62866321-62866340 | None:intergenic | 15.0% |
| !! | AGTTTCATTAAAAGATAATA+AGG | - | chr6_1:62866322-62866341 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAACTTTAGTCT+CGG | - | chr6_1:62863241-62863260 | None:intergenic | 20.0% |
| !! | AGTGAACAAATTGATAAAAA+TGG | + | chr6_1:62863672-62863691 | Msa0890240:intron | 20.0% |
| !!! | TGAAAAGGTTTTTAAATAAG+TGG | + | chr6_1:62864254-62864273 | Msa0890240:intron | 20.0% |
| !! | CTATACAATGAATGTAAAAT+TGG | - | chr6_1:62864632-62864651 | None:intergenic | 20.0% |
| !!! | CAGTTTCTTAGTTTTTAATT+AGG | + | chr6_1:62864666-62864685 | Msa0890240:intron | 20.0% |
| !! | ATTGTTTCGATTATAAACTT+GGG | - | chr6_1:62864787-62864806 | None:intergenic | 20.0% |
| !! | ATAAACTACTTATTGATCTT+TGG | + | chr6_1:62864944-62864963 | Msa0890240:intron | 20.0% |
| !!! | ATTGATCTTTGGAAATAATA+TGG | + | chr6_1:62864955-62864974 | Msa0890240:intron | 20.0% |
| !! | ATGTGAGATTGATAAAATTA+CGG | - | chr6_1:62865164-62865183 | None:intergenic | 20.0% |
| !!! | TTAACTTTTGTGCTATATAA+AGG | - | chr6_1:62865207-62865226 | None:intergenic | 20.0% |
| !!! | TTTGAGTTTAAATCATTTGA+TGG | + | chr6_1:62865718-62865737 | Msa0890240:CDS | 20.0% |
| !!! | AATATTTTTTACATAAGCAC+AGG | - | chr6_1:62865944-62865963 | None:intergenic | 20.0% |
| !! | TTAATTTTTACCTGTTCTAC+TGG | - | chr6_1:62863043-62863062 | None:intergenic | 25.0% |
| ! | AGTAGAACAGGTAAAAATTA+AGG | + | chr6_1:62863042-62863061 | Msa0890240:intron | 25.0% |
| !!! | AAATTAAGGAGTTTTGAACT+TGG | + | chr6_1:62863056-62863075 | Msa0890240:intron | 25.0% |
| !!! | AATTGATGATTTTGCAAGAT+TGG | + | chr6_1:62863148-62863167 | Msa0890240:intron | 25.0% |
| !! | AATAAATTCTGCTTCTAGAA+TGG | - | chr6_1:62863280-62863299 | None:intergenic | 25.0% |
| !! | AATAATGTGTGTTTTCCTTT+TGG | - | chr6_1:62863485-62863504 | None:intergenic | 25.0% |
| !! | CTTTATTTGCAAAAAGTCTA+AGG | + | chr6_1:62863567-62863586 | Msa0890240:intron | 25.0% |
| !! | TTTTGGTATATTATGGCAAA+TGG | - | chr6_1:62863747-62863766 | None:intergenic | 25.0% |
| ! | AATTCTGCTTCTATATTTCA+GGG | - | chr6_1:62863817-62863836 | None:intergenic | 25.0% |
| ! | AAATTCTGCTTCTATATTTC+AGG | - | chr6_1:62863818-62863837 | None:intergenic | 25.0% |
| !!! | AAAATGGATTTTGACATGTT+TGG | - | chr6_1:62863858-62863877 | None:intergenic | 25.0% |
| ! | TATGCAAAATTTGAAAATCG+AGG | + | chr6_1:62864510-62864529 | Msa0890240:intron | 25.0% |
| ! | ATGCAAAATTTGAAAATCGA+GGG | + | chr6_1:62864511-62864530 | Msa0890240:intron | 25.0% |
| ! | ATTCATTGTATAGACAATGA+AGG | + | chr6_1:62864639-62864658 | Msa0890240:intron | 25.0% |
| ! | TTGTTTCGATTATAAACTTG+GGG | - | chr6_1:62864786-62864805 | None:intergenic | 25.0% |
| ! | CATTGTTTCGATTATAAACT+TGG | - | chr6_1:62864788-62864807 | None:intergenic | 25.0% |
| ! | GAATATATAAAGTGCATGTT+TGG | + | chr6_1:62865053-62865072 | Msa0890240:intron | 25.0% |
| !! | CAGTGACTTACATTAATTTT+GGG | + | chr6_1:62865100-62865119 | Msa0890240:intron | 25.0% |
| ! | AAAGTATGGAATATCAACTT+TGG | + | chr6_1:62865361-62865380 | Msa0890240:CDS | 25.0% |
| ! | AAGTATGGAATATCAACTTT+GGG | + | chr6_1:62865362-62865381 | Msa0890240:CDS | 25.0% |
| ! | GTTTATATTATCTTACCAAC+AGG | - | chr6_1:62865826-62865845 | None:intergenic | 25.0% |
| ! | CAATCATACAAATAAGCAAA+GGG | - | chr6_1:62865905-62865924 | None:intergenic | 25.0% |
| ! | ACAATCATACAAATAAGCAA+AGG | - | chr6_1:62865906-62865925 | None:intergenic | 25.0% |
| !!! | AAAGATTCTGAAAGTGATTT+TGG | - | chr6_1:62866040-62866059 | None:intergenic | 25.0% |
| ! | AAAATCACTTTCAGAATCTT+TGG | + | chr6_1:62866039-62866058 | Msa0890240:intron | 25.0% |
| ! | GTCGTCATAAAATAAAACTT+AGG | - | chr6_1:62866201-62866220 | None:intergenic | 25.0% |
| ! | CATTAAAAGATAATAAGGGA+TGG | - | chr6_1:62866317-62866336 | None:intergenic | 25.0% |
| ! | AAGTAACTTCACGAAGTATT+GGG | - | chr6_1:62862997-62863016 | None:intergenic | 30.0% |
| TACTTCTGCTTTACATTCAA+TGG | + | chr6_1:62863012-62863031 | Msa0890240:CDS | 30.0% | |
| ACTTCTGCTTTACATTCAAT+GGG | + | chr6_1:62863013-62863032 | Msa0890240:CDS | 30.0% | |
| !!! | TGATTTTGCAAGATTGGTTT+TGG | + | chr6_1:62863154-62863173 | Msa0890240:intron | 30.0% |
| ! | TAACTTTGTTGTGCTTCATT+AGG | - | chr6_1:62863370-62863389 | None:intergenic | 30.0% |
| GATAAAAAGCAAAGAAAGAC+AGG | + | chr6_1:62863401-62863420 | Msa0890240:intron | 30.0% | |
| ! | ATCTTTTCCAAAAGTTACAC+AGG | + | chr6_1:62863536-62863555 | Msa0890240:intron | 30.0% |
| ! | TATCAATTTGTTCACTCTTC+AGG | - | chr6_1:62863668-62863687 | None:intergenic | 30.0% |
| TGCCATAATATACCAAAAAC+AGG | + | chr6_1:62863749-62863768 | Msa0890240:intron | 30.0% | |
| !!! | GTCCTGTTTTTGGTATATTA+TGG | - | chr6_1:62863754-62863773 | None:intergenic | 30.0% |
| ! | ATCATTCATTGTCCTGTTTT+TGG | - | chr6_1:62863764-62863783 | None:intergenic | 30.0% |
| !!! | TTGTTTGGTTCTACTTTTGT+AGG | - | chr6_1:62863905-62863924 | None:intergenic | 30.0% |
| GGAAAATGTAAGTGTTTGTT+TGG | - | chr6_1:62863920-62863939 | None:intergenic | 30.0% | |
| !! | AACTTTTGGGAAGGATTTTT+TGG | - | chr6_1:62863941-62863960 | None:intergenic | 30.0% |
| GTGTAGTTTAGATTGTGAAA+AGG | + | chr6_1:62864239-62864258 | Msa0890240:intron | 30.0% | |
| TTAAATAAGTGGCTATGATG+TGG | + | chr6_1:62864265-62864284 | Msa0890240:intron | 30.0% | |
| !!! | GCTTTTTTGGTAAACAAAGA+TGG | + | chr6_1:62864329-62864348 | Msa0890240:intron | 30.0% |
| AACTCCATACAGCTAAATTT+GGG | - | chr6_1:62865014-62865033 | None:intergenic | 30.0% | |
| AAACTCCATACAGCTAAATT+TGG | - | chr6_1:62865015-62865034 | None:intergenic | 30.0% | |
| ! | GCAGTGACTTACATTAATTT+TGG | + | chr6_1:62865099-62865118 | Msa0890240:intron | 30.0% |
| !!! | TTTTTTTTTCAACATCACGG+TGG | + | chr6_1:62865134-62865153 | Msa0890240:intron | 30.0% |
| !! | GTGTTTTGTTGCAATATTGA+AGG | + | chr6_1:62865246-62865265 | Msa0890240:intron | 30.0% |
| CAGATGCCATAAATACATTT+CGG | - | chr6_1:62865331-62865350 | None:intergenic | 30.0% | |
| TCTGATGAATCATCAAAGTA+TGG | + | chr6_1:62865347-62865366 | Msa0890240:CDS | 30.0% | |
| ! | AACTTTGGGAAAAGAGTTTA+TGG | + | chr6_1:62865376-62865395 | Msa0890240:CDS | 30.0% |
| ! | TCCTTCTATTTTGTCTTTTG+TGG | + | chr6_1:62865418-62865437 | Msa0890240:CDS | 30.0% |
| ACATAATTTAGGAGAATGAG+TGG | - | chr6_1:62865477-62865496 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTGATCCAGAAAG+TGG | + | chr6_1:62865500-62865519 | Msa0890240:intron | 30.0% |
| ! | TTTTTCTTGATCCAGAAAGT+GGG | + | chr6_1:62865501-62865520 | Msa0890240:intron | 30.0% |
| !!! | TGTTTTGGGGAAATGAAAAT+AGG | + | chr6_1:62865638-62865657 | Msa0890240:CDS | 30.0% |
| !!! | GTTTTGGGGAAATGAAAATA+GGG | + | chr6_1:62865639-62865658 | Msa0890240:CDS | 30.0% |
| ! | ATGATTGTTGCACAAGATTT+TGG | + | chr6_1:62865918-62865937 | Msa0890240:intron | 30.0% |
| CGAAATCAAAATATTAGTCG+TGG | + | chr6_1:62866225-62866244 | Msa0890240:intron | 30.0% | |
| TAAAAGATAATAAGGGATGG+TGG | - | chr6_1:62866314-62866333 | None:intergenic | 30.0% | |
| ! | TTGATGTTATTTATGTTGCC+AGG | + | chr6_1:62866374-62866393 | Msa0890240:intron | 30.0% |
| !! | AGTAACTTCACGAAGTATTG+GGG | - | chr6_1:62862996-62863015 | None:intergenic | 35.0% |
| GAAGTAACTTCACGAAGTAT+TGG | - | chr6_1:62862998-62863017 | None:intergenic | 35.0% | |
| AGCAAAGAAAGACAGGAAAA+AGG | + | chr6_1:62863408-62863427 | Msa0890240:intron | 35.0% | |
| AAAGACCCTTTGATTGTTTG+GGG | - | chr6_1:62863445-62863464 | None:intergenic | 35.0% | |
| CAAAGACCCTTTGATTGTTT+GGG | - | chr6_1:62863446-62863465 | None:intergenic | 35.0% | |
| !! | TTCCTTTTGGTTACCATTTG+TGG | - | chr6_1:62863472-62863491 | None:intergenic | 35.0% |
| ! | TATGCTGTATGTGGGTTATT+TGG | - | chr6_1:62863604-62863623 | None:intergenic | 35.0% |
| ! | GATCTTTTGTACAATTGACC+TGG | - | chr6_1:62863628-62863647 | None:intergenic | 35.0% |
| AAAAATGGTCCGTAACATGT+TGG | + | chr6_1:62863687-62863706 | Msa0890240:intron | 35.0% | |
| AAAATGGTCCGTAACATGTT+GGG | + | chr6_1:62863688-62863707 | Msa0890240:intron | 35.0% | |
| TATGGCAAATGGTTAAGTCT+TGG | - | chr6_1:62863736-62863755 | None:intergenic | 35.0% | |
| AATCAGAAAATTGGCCACAA+GGG | - | chr6_1:62863966-62863985 | None:intergenic | 35.0% | |
| AAATCAGAAAATTGGCCACA+AGG | - | chr6_1:62863967-62863986 | None:intergenic | 35.0% | |
| TTTACACACGTGAAACTGTT+AGG | + | chr6_1:62864125-62864144 | Msa0890240:CDS | 35.0% | |
| TTACACACGTGAAACTGTTA+GGG | + | chr6_1:62864126-62864145 | Msa0890240:CDS | 35.0% | |
| !!! | ACAGAAGCAACATGCTTTTT+TGG | + | chr6_1:62864316-62864335 | Msa0890240:intron | 35.0% |
| GTTCGAATGTGTTTCGATAA+AGG | - | chr6_1:62864867-62864886 | None:intergenic | 35.0% | |
| ! | GGATGTTGTTTACTTACAAG+AGG | + | chr6_1:62864976-62864995 | Msa0890240:intron | 35.0% |
| ACTCCATACAGCTAAATTTG+GGG | - | chr6_1:62865013-62865032 | None:intergenic | 35.0% | |
| AAAGTGCATGTTTGGATGAA+TGG | + | chr6_1:62865061-62865080 | Msa0890240:intron | 35.0% | |
| AAGGTACACATTAGATGATC+TGG | + | chr6_1:62865265-62865284 | Msa0890240:intron | 35.0% | |
| AGGTACACATTAGATGATCT+GGG | + | chr6_1:62865266-62865285 | Msa0890240:intron | 35.0% | |
| GAATGGCCGAAATGTATTTA+TGG | + | chr6_1:62865322-62865341 | Msa0890240:CDS | 35.0% | |
| GCCACAAAAGACAAAATAGA+AGG | - | chr6_1:62865422-62865441 | None:intergenic | 35.0% | |
| ATAGATAGCAGAAACCTGAT+AGG | - | chr6_1:62865452-62865471 | None:intergenic | 35.0% | |
| ! | GGGACATCAAGAATTGATTT+CGG | + | chr6_1:62865521-62865540 | Msa0890240:intron | 35.0% |
| AAATTACTCGCAAAACCATC+AGG | - | chr6_1:62865700-62865719 | None:intergenic | 35.0% | |
| TAGCAGATAAGCCTAAGTAT+GGG | - | chr6_1:62865753-62865772 | None:intergenic | 35.0% | |
| ATAGCAGATAAGCCTAAGTA+TGG | - | chr6_1:62865754-62865773 | None:intergenic | 35.0% | |
| TTATCTGCTATAATTGCTGC+TGG | + | chr6_1:62865763-62865782 | Msa0890240:CDS | 35.0% | |
| ATTATCTTACCAACAGGTTC+AGG | - | chr6_1:62865820-62865839 | None:intergenic | 35.0% | |
| !!! | CTCTGAAGTTTTTCTGGATT+TGG | - | chr6_1:62866013-62866032 | None:intergenic | 35.0% |
| !!! | GGTAATCTCTGAAGTTTTTC+TGG | - | chr6_1:62866019-62866038 | None:intergenic | 35.0% |
| ! | ATCTTTGGAAGCTCTTCATA+AGG | + | chr6_1:62866054-62866073 | Msa0890240:intron | 35.0% |
| ! | GACTTTCTAGAGGAGTTTAT+TGG | + | chr6_1:62866079-62866098 | Msa0890240:intron | 35.0% |
| TACCTTTCGAATTGCCTTTA+TGG | - | chr6_1:62866122-62866141 | None:intergenic | 35.0% | |
| AAGCTTCAAAGTTAGTCGAT+TGG | - | chr6_1:62866356-62866375 | None:intergenic | 35.0% | |
| AGTAATGATCAATTTCAGCC+TGG | - | chr6_1:62866395-62866414 | None:intergenic | 35.0% | |
| TGATCATTACTCGAAGAACA+AGG | + | chr6_1:62866404-62866423 | Msa0890240:CDS | 35.0% | |
| AATGGGAATTCCAGTAGAAC+AGG | + | chr6_1:62863030-62863049 | Msa0890240:CDS | 40.0% | |
| ! | TGCTGAGAAGCAAACTTTTG+CGG | - | chr6_1:62863338-62863357 | None:intergenic | 40.0% |
| ACCAATCCCCAAACAATCAA+AGG | + | chr6_1:62863436-62863455 | Msa0890240:intron | 40.0% | |
| CCAATCCCCAAACAATCAAA+GGG | + | chr6_1:62863437-62863456 | Msa0890240:intron | 40.0% | |
| GCAAAGACCCTTTGATTGTT+TGG | - | chr6_1:62863447-62863466 | None:intergenic | 40.0% | |
| !! | CTTTTGGTTACCATTTGTGG+TGG | - | chr6_1:62863469-62863488 | None:intergenic | 40.0% |
| CACCACAAATGGTAACCAAA+AGG | + | chr6_1:62863467-62863486 | Msa0890240:intron | 40.0% | |
| TATTTGCTTTCAGCCAACGA+AGG | + | chr6_1:62863501-62863520 | Msa0890240:intron | 40.0% | |
| ATTTGCTTTCAGCCAACGAA+GGG | + | chr6_1:62863502-62863521 | Msa0890240:intron | 40.0% | |
| ! | CAATTTGTTCACTCTTCAGG+TGG | - | chr6_1:62863665-62863684 | None:intergenic | 40.0% |
| AAATGGTCCGTAACATGTTG+GGG | + | chr6_1:62863689-62863708 | Msa0890240:intron | 40.0% | |
| CAAATGGTTAAGTCTTGGAC+AGG | - | chr6_1:62863731-62863750 | None:intergenic | 40.0% | |
| TGCTTCTATATTTCAGGGTG+TGG | - | chr6_1:62863812-62863831 | None:intergenic | 40.0% | |
| TTACATGCAGAAGCTGGAAA+AGG | + | chr6_1:62864046-62864065 | Msa0890240:CDS | 40.0% | |
| TGGAAAAGGTCAATTTGAGC+TGG | + | chr6_1:62864060-62864079 | Msa0890240:CDS | 40.0% | |
| !! | AGGTCAATTTGAGCTGGTTT+TGG | + | chr6_1:62864066-62864085 | Msa0890240:CDS | 40.0% |
| !!! | GGTCAATTTGAGCTGGTTTT+GGG | + | chr6_1:62864067-62864086 | Msa0890240:CDS | 40.0% |
| AGGGCAATTGCTAGAAAACA+TGG | + | chr6_1:62864145-62864164 | Msa0890240:CDS | 40.0% | |
| GCAATGGATATTACCACACT+TGG | - | chr6_1:62864202-62864221 | None:intergenic | 40.0% | |
| ! | GCATGTTGCTTCTGTAGTTT+AGG | - | chr6_1:62864311-62864330 | None:intergenic | 40.0% |
| ! | ACAATGCCTAAGAGTGTGTT+TGG | + | chr6_1:62864367-62864386 | Msa0890240:intron | 40.0% |
| GGGAGTTCTCATGATAGATT+TGG | - | chr6_1:62864766-62864785 | None:intergenic | 40.0% | |
| ACACCCCAAATTTAGCTGTA+TGG | + | chr6_1:62865007-62865026 | Msa0890240:intron | 40.0% | |
| ACATTAGATGATCTGGGTTC+TGG | + | chr6_1:62865272-62865291 | Msa0890240:CDS | 40.0% | |
| TTGGGAAAAGAGTTTATGGC+TGG | + | chr6_1:62865380-62865399 | Msa0890240:CDS | 40.0% | |
| ATTCTTGATGTCCCACTTTC+TGG | - | chr6_1:62865515-62865534 | None:intergenic | 40.0% | |
| ! | GAGTGGTGCATACATGTTTT+GGG | + | chr6_1:62865624-62865643 | Msa0890240:CDS | 40.0% |
| ! | AGTGGTGCATACATGTTTTG+GGG | + | chr6_1:62865625-62865644 | Msa0890240:CDS | 40.0% |
| TTGGGGAAATGAAAATAGGG+AGG | + | chr6_1:62865642-62865661 | Msa0890240:CDS | 40.0% | |
| ! | ATAATTGCTGCTGGCATTGA+TGG | + | chr6_1:62865772-62865791 | Msa0890240:CDS | 40.0% |
| TTTGGAAGCTCTTCATAAGG+CGG | + | chr6_1:62866057-62866076 | Msa0890240:intron | 40.0% | |
| TGCCATAAAGGCAATTCGAA+AGG | + | chr6_1:62866117-62866136 | Msa0890240:intron | 40.0% | |
| ACGACTGATATTTGTGACTG+TGG | - | chr6_1:62866153-62866172 | None:intergenic | 40.0% | |
| CAGTCACAAATATCAGTCGT+AGG | + | chr6_1:62866153-62866172 | Msa0890240:intron | 40.0% | |
| TCTTCTTTCCCTTCCCTGTA+TGG | - | chr6_1:62862917-62862936 | None:intergenic | 45.0% | |
| ACAGGGAAGGGAAAGAAGAA+TGG | + | chr6_1:62862918-62862937 | Msa0890240:CDS | 45.0% | |
| !! | TGCATCACATCGACTTTGTG+TGG | + | chr6_1:62863095-62863114 | Msa0890240:intron | 45.0% |
| CCCTTTGATTGTTTGGGGAT+TGG | - | chr6_1:62863440-62863459 | None:intergenic | 45.0% | |
| ! | CAGTTCGCCTGTGTAACTTT+TGG | - | chr6_1:62863546-62863565 | None:intergenic | 45.0% |
| ! | ACTCTTCAGGTGGTAATGCT+AGG | - | chr6_1:62863655-62863674 | None:intergenic | 45.0% |
| AATGGTCCGTAACATGTTGG+GGG | + | chr6_1:62863690-62863709 | Msa0890240:intron | 45.0% | |
| !! | ACAAGGGACAACTTTTGGGA+AGG | - | chr6_1:62863950-62863969 | None:intergenic | 45.0% |
| TTCCCAAAAGTTGTCCCTTG+TGG | + | chr6_1:62863949-62863968 | Msa0890240:intron | 45.0% | |
| TTGCAGTTACATGCAGAAGC+TGG | + | chr6_1:62864040-62864059 | Msa0890240:intron | 45.0% | |
| !!! | TGAGCTGGTTTTGGGACATA+TGG | + | chr6_1:62864075-62864094 | Msa0890240:CDS | 45.0% |
| TCCAAAGTACGTACCAAGTG+TGG | + | chr6_1:62864186-62864205 | Msa0890240:intron | 45.0% | |
| ACCACACTTGGTACGTACTT+TGG | - | chr6_1:62864190-62864209 | None:intergenic | 45.0% | |
| ! | TGCCTAAGAGTGTGTTTGGA+TGG | + | chr6_1:62864371-62864390 | Msa0890240:intron | 45.0% |
| ! | GCCTAAGAGTGTGTTTGGAT+GGG | + | chr6_1:62864372-62864391 | Msa0890240:intron | 45.0% |
| TCCCATCCAAACACACTCTT+AGG | - | chr6_1:62864376-62864395 | None:intergenic | 45.0% | |
| GCCATGTTCATCTAAGCTTG+TGG | + | chr6_1:62865297-62865316 | Msa0890240:CDS | 45.0% | |
| GCCACAAGCTTAGATGAACA+TGG | - | chr6_1:62865301-62865320 | None:intergenic | 45.0% | |
| CATCTAAGCTTGTGGCAGAA+TGG | + | chr6_1:62865305-62865324 | Msa0890240:CDS | 45.0% | |
| AGCAGAAACCTGATAGGAAG+TGG | - | chr6_1:62865446-62865465 | None:intergenic | 45.0% | |
| TATGCACCACTCCATGTGTT+CGG | - | chr6_1:62865616-62865635 | None:intergenic | 45.0% | |
| ! | GGAGTGGTGCATACATGTTT+TGG | + | chr6_1:62865623-62865642 | Msa0890240:CDS | 45.0% |
| GGTTCTGCAAACCCATACTT+AGG | + | chr6_1:62865739-62865758 | Msa0890240:CDS | 45.0% | |
| CTTTCACTTCCTGAACCTGT+TGG | + | chr6_1:62865808-62865827 | Msa0890240:intron | 45.0% | |
| ! | TCATAAGGCGGACTTTCTAG+AGG | + | chr6_1:62866069-62866088 | Msa0890240:intron | 45.0% |
| ! | CAAGTTGCTGACTGCCATAA+AGG | + | chr6_1:62866105-62866124 | Msa0890240:intron | 45.0% |
| TCAGTCGTAGGATGAAGACT+AGG | + | chr6_1:62866165-62866184 | Msa0890240:intron | 45.0% | |
| !!! | CAAATTTTTAAAATTTTAAT+GGG | + | chr6_1:62864543-62864562 | Msa0890240:intron | 5.0% |
| CTTTCCCTTCCCTGTATGGT+TGG | - | chr6_1:62862913-62862932 | None:intergenic | 50.0% | |
| ATGCTGACGAGGAGCAGTAA+GGG | - | chr6_1:62862961-62862980 | None:intergenic | 50.0% | |
| AATGCTGACGAGGAGCAGTA+AGG | - | chr6_1:62862962-62862981 | None:intergenic | 50.0% | |
| AGCAACGTCAAATGCTGACG+AGG | - | chr6_1:62862972-62862991 | None:intergenic | 50.0% | |
| AGGGTCTTTGCCACCACAAA+TGG | + | chr6_1:62863456-62863475 | Msa0890240:intron | 50.0% | |
| TCAAGATGACCTCCCTTCGT+TGG | - | chr6_1:62863517-62863536 | None:intergenic | 50.0% | |
| AACCCACATACAGCATAGCC+AGG | + | chr6_1:62863607-62863626 | Msa0890240:intron | 50.0% | |
| GACCTGGCTATGCTGTATGT+GGG | - | chr6_1:62863612-62863631 | None:intergenic | 50.0% | |
| TGACCTGGCTATGCTGTATG+TGG | - | chr6_1:62863613-62863632 | None:intergenic | 50.0% | |
| AGTGTGCCCCCAACATGTTA+CGG | - | chr6_1:62863699-62863718 | None:intergenic | 50.0% | |
| ! | GGCCACAAGGGACAACTTTT+GGG | - | chr6_1:62863954-62863973 | None:intergenic | 50.0% |
| ! | TGGCCACAAGGGACAACTTT+TGG | - | chr6_1:62863955-62863974 | None:intergenic | 50.0% |
| TTGTGGCACCACTTCCTATC+AGG | + | chr6_1:62865435-62865454 | Msa0890240:CDS | 50.0% | |
| ATCGATTGCAGCCGAACACA+TGG | + | chr6_1:62865602-62865621 | Msa0890240:CDS | 50.0% | |
| AAACCATCAGGAGTTCCAGG+AGG | - | chr6_1:62865688-62865707 | None:intergenic | 50.0% | |
| GCAAAACCATCAGGAGTTCC+AGG | - | chr6_1:62865691-62865710 | None:intergenic | 50.0% | |
| !! | CTGGCATTGATGGTCTACGT+AGG | + | chr6_1:62865782-62865801 | Msa0890240:CDS | 50.0% |
| TGCTGACGAGGAGCAGTAAG+GGG | - | chr6_1:62862960-62862979 | None:intergenic | 55.0% | |
| TGCTTTCAGCCAACGAAGGG+AGG | + | chr6_1:62863505-62863524 | Msa0890240:intron | 55.0% | |
| TTGCAGCCGAACACATGGAG+TGG | + | chr6_1:62865607-62865626 | Msa0890240:CDS | 55.0% | |
| GGAGGAGATGAAGCTCGCAA+TGG | - | chr6_1:62865670-62865689 | None:intergenic | 55.0% | |
| TTGCGAGCTTCATCTCCTCC+TGG | + | chr6_1:62865670-62865689 | Msa0890240:CDS | 55.0% | |
| TCTCCTCCTGGAACTCCTGA+TGG | + | chr6_1:62865682-62865701 | Msa0890240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 62862908 | 62866455 | 62862908 | ID=Msa0890240;Name=Msa0890240 |
| chr6_1 | mRNA | 62862908 | 62866455 | 62862908 | ID=Msa0890240-mRNA-1;Parent=Msa0890240;Name=Msa0890240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.75|0.4|1|0.75|0.6|5|0|256 |
| chr6_1 | exon | 62862908 | 62863051 | 62862908 | ID=Msa0890240-mRNA-1:exon:11494;Parent=Msa0890240-mRNA-1 |
| chr6_1 | exon | 62864046 | 62864191 | 62864046 | ID=Msa0890240-mRNA-1:exon:11495;Parent=Msa0890240-mRNA-1 |
| chr6_1 | exon | 62865268 | 62865456 | 62865268 | ID=Msa0890240-mRNA-1:exon:11496;Parent=Msa0890240-mRNA-1 |
| chr6_1 | exon | 62865597 | 62865825 | 62865597 | ID=Msa0890240-mRNA-1:exon:11497;Parent=Msa0890240-mRNA-1 |
| chr6_1 | exon | 62866396 | 62866455 | 62866396 | ID=Msa0890240-mRNA-1:exon:11498;Parent=Msa0890240-mRNA-1 |
| chr6_1 | CDS | 62862908 | 62863051 | 62862908 | ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1 |
| chr6_1 | CDS | 62864046 | 62864191 | 62864046 | ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1 |
| chr6_1 | CDS | 62865268 | 62865456 | 62865268 | ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1 |
| chr6_1 | CDS | 62865597 | 62865825 | 62865597 | ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1 |
| chr6_1 | CDS | 62866396 | 62866455 | 62866396 | ID=Msa0890240-mRNA-1:cds;Parent=Msa0890240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
