Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954980 | XP_013441931.1 | 96.916 | 454 | 13 | 1 | 1 | 453 | 1 | 454 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954980 | sp|Q86B00|GLNA1_DICDI | 30.804 | 448 | 285 | 10 | 8 | 435 | 37 | 479 | 4.08e-65 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954980 | Q9SC91 | 96.916 | 454 | 13 | 1 | 1 | 453 | 1 | 454 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0890240 | Msa0954980 | 0.806931 | 6.473733e-50 | -8.615850e-47 |
| Msa0913550 | Msa0954980 | 0.800842 | 1.191901e-48 | -8.615850e-47 |
| Msa0918150 | Msa0954980 | 0.859086 | 5.272755e-63 | -8.615850e-47 |
| Msa0954980 | Msa0987640 | 0.816941 | 4.264759e-52 | -8.615850e-47 |
| Msa0954980 | Msa0990490 | 0.869486 | 2.986170e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954980 | MtrunA17_Chr6g0471351 | 96.491 | 456 | 13 | 2 | 1 | 453 | 1 | 456 | 0.0 | 907 |
| Msa0954980 | MtrunA17_Chr1g0180151 | 86.758 | 438 | 57 | 1 | 17 | 453 | 218 | 655 | 0.0 | 809 |
| Msa0954980 | MtrunA17_Chr3g0091091 | 81.978 | 455 | 78 | 4 | 1 | 453 | 22 | 474 | 0.0 | 765 |
| Msa0954980 | MtrunA17_Chr1g0180001 | 80.176 | 454 | 84 | 4 | 1 | 453 | 1 | 449 | 0.0 | 738 |
| Msa0954980 | MtrunA17_Chr1g0180191 | 83.621 | 232 | 38 | 0 | 17 | 248 | 404 | 635 | 8.38e-141 | 417 |
| Msa0954980 | MtrunA17_Chr1g0180211 | 88.194 | 144 | 16 | 1 | 311 | 453 | 12 | 155 | 3.41e-87 | 263 |
| Msa0954980 | MtrunA17_Chr1g0179971 | 84.000 | 125 | 20 | 0 | 193 | 317 | 1 | 125 | 2.53e-72 | 225 |
| Msa0954980 | MtrunA17_Chr1g0179981 | 76.056 | 142 | 33 | 1 | 1 | 142 | 1 | 141 | 2.00e-69 | 217 |
| Msa0954980 | MtrunA17_Chr3g0091051 | 75.000 | 68 | 15 | 2 | 311 | 378 | 27 | 92 | 1.87e-29 | 110 |
| Msa0954980 | MtrunA17_Chr1g0180201 | 87.500 | 40 | 5 | 0 | 273 | 312 | 1 | 40 | 1.58e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954980 | AT3G53180.1 | 66.364 | 440 | 145 | 2 | 17 | 453 | 413 | 852 | 0.0 | 626 |
Find 94 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCATCTTTGAGAATTT+TGG | 0.124972 | 6_3:+58527809 | None:intergenic |
| TACCTTTCGAATCGCCTTTA+TGG | 0.152682 | 6_3:+58523508 | None:intergenic |
| AAAGATTCTGAAAGTGATTT+TGG | 0.159408 | 6_3:+58523587 | None:intergenic |
| TTTCATTTGTTCGTATATTA+TGG | 0.185780 | 6_3:-58528330 | Msa0954980:CDS |
| GCTGACTTTCTAGAGTTTAT+TGG | 0.200037 | 6_3:-58523548 | Msa0954980:CDS |
| AACTTTGGGAAAAGAGTTTA+TGG | 0.207112 | 6_3:-58524253 | Msa0954980:CDS |
| GCTCCAGTTGGTTCTGGTTT+AGG | 0.228692 | 6_3:-58528090 | Msa0954980:CDS |
| AAAATCACTTTCAGAATCTT+TGG | 0.244497 | 6_3:-58523585 | Msa0954980:CDS |
| CACCTGATTTATCTACTAAA+AGG | 0.251150 | 6_3:-58528044 | Msa0954980:CDS |
| TGTTCTGGGGAAATGAAAAT+AGG | 0.260380 | 6_3:-58523991 | Msa0954980:CDS |
| AGGTCAATTTGAGCTGGTTT+TGG | 0.272216 | 6_3:-58525533 | Msa0954980:CDS |
| GAATGGCCGAAATGTATTTA+TGG | 0.277709 | 6_3:-58524307 | Msa0954980:CDS |
| GATGGAGCTCCAGTTGGTTC+TGG | 0.295207 | 6_3:-58528096 | Msa0954980:CDS |
| ATATTATGGGTTGATAATTC+AGG | 0.296465 | 6_3:-58528316 | Msa0954980:CDS |
| TTCTCTTGAAGAGCGTAATA+AGG | 0.297850 | 6_3:-58526212 | Msa0954980:intron |
| TACTTCTGCTTTACATTCAA+TGG | 0.297886 | 6_3:-58526020 | Msa0954980:CDS |
| TTTACACACGTGAAACTGTT+AGG | 0.307448 | 6_3:-58525474 | Msa0954980:CDS |
| TTGTAGCACCACTTCCTATC+AGG | 0.316453 | 6_3:-58524194 | Msa0954980:intron |
| TTTGAGTTTAAATCATTTGA+TGG | 0.321281 | 6_3:-58523911 | Msa0954980:CDS |
| ATAGCAGATAAGCCTAAGTA+TGG | 0.330191 | 6_3:+58523878 | None:intergenic |
| AAGGTACACATTAGATGATC+TGG | 0.339749 | 6_3:-58524364 | Msa0954980:CDS |
| AAGTAACTTCACGAAGTATT+GGG | 0.344458 | 6_3:+58526038 | None:intergenic |
| ATAATTGCTGCTGGCATTGA+TGG | 0.344774 | 6_3:-58523857 | Msa0954980:CDS |
| TCTGATGAATCATCAAAGTA+TGG | 0.348059 | 6_3:-58524282 | Msa0954980:CDS |
| AAATGAAACATCAGTGTCTA+AGG | 0.359967 | 6_3:+58528345 | None:intergenic |
| ATTATCTTACCAACAGGTTC+AGG | 0.370199 | 6_3:+58523812 | None:intergenic |
| TGGTTTAGCATTTGTGAGTA+TGG | 0.370758 | 6_3:-58528136 | Msa0954980:CDS |
| GGAGTGGTGCATACATGTTC+TGG | 0.374699 | 6_3:-58524006 | Msa0954980:CDS |
| TTCATTTGTTCGTATATTAT+GGG | 0.380054 | 6_3:-58528329 | Msa0954980:CDS |
| AAAGTATGGAATATCAACTT+TGG | 0.394810 | 6_3:-58524268 | Msa0954980:CDS |
| TATGATGTTGTTACTAAGAA+TGG | 0.399525 | 6_3:-58528162 | Msa0954980:CDS |
| ACTCTTCTTAAGGCCTCTCT+TGG | 0.399840 | 6_3:+58527834 | None:intergenic |
| CAGATGCCATAAATACATTT+CGG | 0.416064 | 6_3:+58524301 | None:intergenic |
| ACATTAGATGATCTGGGTTC+TGG | 0.424644 | 6_3:-58524357 | Msa0954980:CDS |
| AAGTATGGAATATCAACTTT+GGG | 0.428984 | 6_3:-58524267 | Msa0954980:CDS |
| AATGGGAATTCCAGTAGAAC+AGG | 0.438731 | 6_3:-58526002 | Msa0954980:intron |
| CAAGTTGCTAACTGCCATAA+AGG | 0.439824 | 6_3:-58523522 | Msa0954980:CDS |
| ATCTTTGGAAGCTCTTCATA+AGG | 0.440929 | 6_3:-58523570 | Msa0954980:CDS |
| ACTTCTGCTTTACATTCAAT+GGG | 0.441181 | 6_3:-58526019 | Msa0954980:CDS |
| GAAGTAACTTCACGAAGTAT+TGG | 0.442468 | 6_3:+58526037 | None:intergenic |
| CTACTAAAAGGACAATTCCT+TGG | 0.465569 | 6_3:-58528032 | Msa0954980:intron |
| GAACCTAAACCAGAACCAAC+TGG | 0.466742 | 6_3:+58528087 | None:intergenic |
| GCTACAAAAGACAAAATAGA+AGG | 0.467923 | 6_3:+58524210 | None:intergenic |
| GGTTCTGGTTTAGGTTCAGT+TGG | 0.476885 | 6_3:-58528081 | Msa0954980:CDS |
| TTGGGAAAAGAGTTTATGGC+TGG | 0.478023 | 6_3:-58524249 | Msa0954980:CDS |
| GTTCTGGGGAAATGAAAATA+GGG | 0.478140 | 6_3:-58523990 | Msa0954980:CDS |
| GCAAAACCATCAGGAGTTCC+AGG | 0.481545 | 6_3:+58523941 | None:intergenic |
| TCTCCTCCTGGAACTCCTGA+TGG | 0.488319 | 6_3:-58523947 | Msa0954980:CDS |
| GACATTAAGCAGCTCAATAA+CGG | 0.488426 | 6_3:+58523177 | None:intergenic |
| TTGCGAGCTTCATCTCCTCC+TGG | 0.498368 | 6_3:-58523959 | Msa0954980:CDS |
| AACTTCCAGGTATTGAATGC+AGG | 0.501261 | 6_3:-58526252 | Msa0954980:intron |
| AAATTACTCGCAAAACCATC+AGG | 0.503241 | 6_3:+58523932 | None:intergenic |
| CTCTTCTTAAGGCCTCTCTT+GGG | 0.505757 | 6_3:+58527835 | None:intergenic |
| ATGCTGACGAGGAGCAGTAA+GGG | 0.511270 | 6_3:+58526074 | None:intergenic |
| ATCTACAACCTGGTCATGCA+TGG | 0.513306 | 6_3:-58527866 | Msa0954980:CDS |
| AGGAAAAGGTCAATTTGAGC+TGG | 0.514778 | 6_3:-58525539 | Msa0954980:CDS |
| AATGCTGACGAGGAGCAGTA+AGG | 0.514992 | 6_3:+58526073 | None:intergenic |
| ACAGGGAAGGGAAAGAAGAA+TGG | 0.521401 | 6_3:-58526114 | Msa0954980:intron |
| TTACACACGTGAAACTGTTA+GGG | 0.524372 | 6_3:-58525473 | Msa0954980:CDS |
| GAGTGGTGCATACATGTTCT+GGG | 0.528128 | 6_3:-58524005 | Msa0954980:CDS |
| CTTTCACTTCCTGAACCTGT+TGG | 0.529336 | 6_3:-58523821 | Msa0954980:intron |
| GTTGTTACTAAGAATGGTGT+TGG | 0.529371 | 6_3:-58528156 | Msa0954980:CDS |
| TTGCAGTTACATGCAGAAGC+AGG | 0.532508 | 6_3:-58525559 | Msa0954980:intron |
| CAATATTCCCATGCATGACC+AGG | 0.533606 | 6_3:+58527858 | None:intergenic |
| TTATCTGCTATAATTGCTGC+TGG | 0.535019 | 6_3:-58523866 | Msa0954980:CDS |
| CATCTAAGCTTGTGGCAGAA+TGG | 0.537152 | 6_3:-58524324 | Msa0954980:CDS |
| ATAGATAGCAGAAACCTGAT+AGG | 0.545554 | 6_3:+58524180 | None:intergenic |
| TATGCACCACTCCATGTGTT+CGG | 0.546842 | 6_3:+58524016 | None:intergenic |
| TCTCAAAGATGAATTTGACT+TGG | 0.550516 | 6_3:-58527802 | Msa0954980:intron |
| ATCGATTGCAGCCGAACACA+TGG | 0.554491 | 6_3:-58524027 | Msa0954980:CDS |
| AGCAGAAACCTGATAGGAAG+TGG | 0.556077 | 6_3:+58524186 | None:intergenic |
| TTACATGCAGAAGCAGGAAA+AGG | 0.560526 | 6_3:-58525553 | Msa0954980:CDS |
| AGGTACACATTAGATGATCT+GGG | 0.560991 | 6_3:-58524363 | Msa0954980:CDS |
| GATTGAGTTGAGTAAAGCAG+TGG | 0.575460 | 6_3:-58528389 | Msa0954980:CDS |
| GGTTCTGCAAACCCATACTT+AGG | 0.580085 | 6_3:-58523890 | Msa0954980:CDS |
| AGGGCAATTGCTAGAAAACA+TGG | 0.595938 | 6_3:-58525454 | Msa0954980:CDS |
| TCTACAACCTGGTCATGCAT+GGG | 0.601144 | 6_3:-58527865 | Msa0954980:CDS |
| TAGCAGATAAGCCTAAGTAT+GGG | 0.608694 | 6_3:+58523879 | None:intergenic |
| AGTAACTTCACGAAGTATTG+GGG | 0.615657 | 6_3:+58526039 | None:intergenic |
| GCCATGTTCATCTAAGCTTG+TGG | 0.618097 | 6_3:-58524332 | Msa0954980:CDS |
| TGCCATAAAGGCGATTCGAA+AGG | 0.619133 | 6_3:-58523510 | Msa0954980:intron |
| GGAGGAGATGAAGCTCGCAA+TGG | 0.620695 | 6_3:+58523962 | None:intergenic |
| AGCAACATCAAATGCTGACG+AGG | 0.632071 | 6_3:+58526063 | None:intergenic |
| TGATCATTACTCGAAGAACA+AGG | 0.636530 | 6_3:-58523222 | Msa0954980:CDS |
| TGCTGACGAGGAGCAGTAAG+GGG | 0.638683 | 6_3:+58526075 | None:intergenic |
| AGTGGAAGATGTTGAACTTG+TGG | 0.645822 | 6_3:-58528371 | Msa0954980:CDS |
| ATGGGAATATTGCCCAAGAG+AGG | 0.646486 | 6_3:-58527847 | Msa0954980:CDS |
| CTGGCATTGATGGTTTACGT+AGG | 0.652558 | 6_3:-58523847 | Msa0954980:CDS |
| GCCACAAGCTTAGATGAACA+TGG | 0.656206 | 6_3:+58524331 | None:intergenic |
| TTGCAGCCGAACACATGGAG+TGG | 0.664649 | 6_3:-58524022 | Msa0954980:CDS |
| GGTGATCTGAATCTACAACC+TGG | 0.678554 | 6_3:-58527876 | Msa0954980:CDS |
| CTGGGGAAATGAAAATAGGG+AGG | 0.699148 | 6_3:-58523987 | Msa0954980:CDS |
| AAACCATCAGGAGTTCCAGG+AGG | 0.759604 | 6_3:+58523944 | None:intergenic |
| AGTGGTGCATACATGTTCTG+GGG | 0.763007 | 6_3:-58524004 | Msa0954980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTATTAAAAAAAATG+TGG | - | chr6_3:58524297-58524316 | Msa0954980:CDS | 10.0% |
| !!! | AAAAAATCCTTTTTTAAAAA+TGG | - | chr6_3:58524547-58524566 | Msa0954980:intron | 10.0% |
| !!! | AAAAATCCTTTTTTAAAAAT+GGG | - | chr6_3:58524548-58524567 | Msa0954980:intron | 10.0% |
| !! | AAAAAAAATATTCAGAAAAT+GGG | + | chr6_3:58525964-58525983 | None:intergenic | 10.0% |
| !! | AAAAAAAAATATTCAGAAAA+TGG | + | chr6_3:58525965-58525984 | None:intergenic | 10.0% |
| !!! | TTCATTTCAATTTTTTTTTT+TGG | - | chr6_3:58526401-58526420 | Msa0954980:intron | 10.0% |
| !! | ATATTTATATACTATGAATT+TGG | + | chr6_3:58526478-58526497 | None:intergenic | 10.0% |
| !!! | GCAAATTTTTAAAATTTTAA+TGG | - | chr6_3:58526533-58526552 | Msa0954980:intron | 10.0% |
| !!! | TTTTTATAATTTAAAGTGTT+TGG | - | chr6_3:58526882-58526901 | Msa0954980:intron | 10.0% |
| !! | TAATTGTTAATTACTTTCAA+TGG | - | chr6_3:58523909-58523928 | Msa0954980:CDS | 15.0% |
| !! | TGTAATTAATCAAAATTTCT+AGG | + | chr6_3:58524046-58524065 | None:intergenic | 15.0% |
| !! | GATTAATTATGTTCAATAAA+TGG | + | chr6_3:58524130-58524149 | None:intergenic | 15.0% |
| !!! | AAAATCCTTTTTTAAAAATG+GGG | - | chr6_3:58524549-58524568 | Msa0954980:intron | 15.0% |
| !!! | TAAATCGACATTTTTAAAAA+TGG | - | chr6_3:58524644-58524663 | Msa0954980:intron | 15.0% |
| !!! | AAATCGACATTTTTAAAAAT+GGG | - | chr6_3:58524645-58524664 | Msa0954980:intron | 15.0% |
| !!! | ATATTTTAAATATAGAGAAG+TGG | - | chr6_3:58524796-58524815 | Msa0954980:intron | 15.0% |
| !!! | TATTTTAAATATAGAGAAGT+GGG | - | chr6_3:58524797-58524816 | Msa0954980:intron | 15.0% |
| !! | AATATACACAAAAATTAGAT+TGG | - | chr6_3:58524920-58524939 | Msa0954980:intron | 15.0% |
| !! | TTATATAGAGAGAAAAATAA+CGG | - | chr6_3:58525198-58525217 | Msa0954980:intron | 15.0% |
| !!! | TATATATTTTATACTTGCAA+TGG | + | chr6_3:58526206-58526225 | None:intergenic | 15.0% |
| !!! | TGAAAAAGTTTTTAAATAAG+TGG | - | chr6_3:58526242-58526261 | Msa0954980:CDS | 15.0% |
| !!! | TTGTGAATTTTGAAAAATAT+AGG | - | chr6_3:58526563-58526582 | Msa0954980:intron | 15.0% |
| !!! | TGTGAATTTTGAAAAATATA+GGG | - | chr6_3:58526564-58526583 | Msa0954980:intron | 15.0% |
| !!! | TGATGTAATGTAATTTTATA+GGG | + | chr6_3:58526798-58526817 | None:intergenic | 15.0% |
| !!! | TTGATGTAATGTAATTTTAT+AGG | + | chr6_3:58526799-58526818 | None:intergenic | 15.0% |
| !! | AGAAAAAAGAAACATAATTT+AGG | + | chr6_3:58527446-58527465 | None:intergenic | 15.0% |
| !! | GTTTCATTAAAAGATAATAA+GGG | + | chr6_3:58528282-58528301 | None:intergenic | 15.0% |
| !! | AGTTTCATTAAAAGATAATA+AGG | + | chr6_3:58528283-58528302 | None:intergenic | 15.0% |
| !! | TTTCATTTGTTCGTATATTA+TGG | - | chr6_3:58523257-58523276 | Msa0954980:intron | 20.0% |
| !! | TTCATTTGTTCGTATATTAT+GGG | - | chr6_3:58523258-58523277 | Msa0954980:intron | 20.0% |
| !!! | CTATATTAGTATATGTTTTG+AGG | - | chr6_3:58523360-58523379 | Msa0954980:intron | 20.0% |
| !! | CAGAATTAAAAGTAATTGAA+GGG | + | chr6_3:58523590-58523609 | None:intergenic | 20.0% |
| !! | TCAGAATTAAAAGTAATTGA+AGG | + | chr6_3:58523591-58523610 | None:intergenic | 20.0% |
| !!! | CAACTTTGTTTCATAATTAT+AGG | - | chr6_3:58523664-58523683 | Msa0954980:intron | 20.0% |
| !!! | AAATTCATCTTTGAGAATTT+TGG | + | chr6_3:58523781-58523800 | None:intergenic | 20.0% |
| !! | ATGGTAAATAGATATACTAT+AGG | - | chr6_3:58523928-58523947 | Msa0954980:CDS | 20.0% |
| !!! | AACTTTATTTCCTTCTAATT+TGG | - | chr6_3:58523980-58523999 | Msa0954980:CDS | 20.0% |
| !!! | ATTTTTTGTAAATTTGTCAG+GGG | + | chr6_3:58524200-58524219 | None:intergenic | 20.0% |
| !!! | CATTTTTTGTAAATTTGTCA+GGG | + | chr6_3:58524201-58524220 | None:intergenic | 20.0% |
| !!! | AATCGACATTTTTAAAAATG+GGG | - | chr6_3:58524646-58524665 | Msa0954980:intron | 20.0% |
| !!! | AACACTAGGTATTTTTTTTA+GGG | + | chr6_3:58524717-58524736 | None:intergenic | 20.0% |
| !!! | AAACACTAGGTATTTTTTTT+AGG | + | chr6_3:58524718-58524737 | None:intergenic | 20.0% |
| !!! | ATTTTAAATATAGAGAAGTG+GGG | - | chr6_3:58524798-58524817 | Msa0954980:intron | 20.0% |
| !! | AAACAATTGAAAAATCAAAG+TGG | - | chr6_3:58525146-58525165 | Msa0954980:intron | 20.0% |
| !!! | TAGATTGTTATTTCGAAAAT+TGG | - | chr6_3:58525269-58525288 | Msa0954980:intron | 20.0% |
| !! | AATAAATTCTGCATCTAAAA+TGG | + | chr6_3:58525845-58525864 | None:intergenic | 20.0% |
| !! | CTATACAATGAATGTAAAAT+TGG | + | chr6_3:58526623-58526642 | None:intergenic | 20.0% |
| !! | ATTCATTGTATAGACAATAA+AGG | - | chr6_3:58526630-58526649 | Msa0954980:intron | 20.0% |
| !!! | CAGTTTCTTAGTTTTTAATT+AGG | - | chr6_3:58526657-58526676 | Msa0954980:intron | 20.0% |
| !! | CATTGTTTCGATTATAAATT+TGG | + | chr6_3:58526749-58526768 | None:intergenic | 20.0% |
| !!! | ATTGATCTTTGGAAATAATA+CGG | - | chr6_3:58526911-58526930 | Msa0954980:intron | 20.0% |
| !! | ATGTGAGATTGATAAAATTA+CGG | + | chr6_3:58527122-58527141 | None:intergenic | 20.0% |
| !!! | TTAACTTTTGTGCTATATAA+AGG | + | chr6_3:58527165-58527184 | None:intergenic | 20.0% |
| !!! | TTTGAGTTTAAATCATTTGA+TGG | - | chr6_3:58527676-58527695 | Msa0954980:intron | 20.0% |
| !!! | AATATTTTTTACAAAAGCAC+AGG | + | chr6_3:58527907-58527926 | None:intergenic | 20.0% |
| !! | GTCATCATAAAATAAAACTT+CGG | + | chr6_3:58528161-58528180 | None:intergenic | 20.0% |
| !!! | ATATTATGGGTTGATAATTC+AGG | - | chr6_3:58523271-58523290 | Msa0954980:intron | 25.0% |
| ! | AACTATAAAGTGACAAACAA+GGG | + | chr6_3:58523320-58523339 | None:intergenic | 25.0% |
| ! | AAACTATAAAGTGACAAACA+AGG | + | chr6_3:58523321-58523340 | None:intergenic | 25.0% |
| ! | TATGATGTTGTTACTAAGAA+TGG | - | chr6_3:58523425-58523444 | Msa0954980:intron | 25.0% |
| !! | AAGCAAGATGAAATTGTTTT+AGG | - | chr6_3:58523690-58523709 | Msa0954980:intron | 25.0% |
| ! | TAGAAGGAAATAAAGTTATG+TGG | + | chr6_3:58523977-58523996 | None:intergenic | 25.0% |
| !!! | CCATTTTTTGTAAATTTGTC+AGG | + | chr6_3:58524202-58524221 | None:intergenic | 25.0% |
| ! | CCTGACAAATTTACAAAAAA+TGG | - | chr6_3:58524199-58524218 | Msa0954980:CDS | 25.0% |
| !!! | TTTTTTTGTGTATTTGTGAG+GGG | + | chr6_3:58524251-58524270 | None:intergenic | 25.0% |
| !!! | GTTTTTTTGTGTATTTGTGA+GGG | + | chr6_3:58524252-58524271 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTGTGTATTTGTG+AGG | + | chr6_3:58524253-58524272 | None:intergenic | 25.0% |
| ! | ACAAATGACCAAAAAAAAAG+GGG | + | chr6_3:58524374-58524393 | None:intergenic | 25.0% |
| ! | CACAAATGACCAAAAAAAAA+GGG | + | chr6_3:58524375-58524394 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTAAGTAGCCTAT+TGG | - | chr6_3:58524762-58524781 | Msa0954980:intron | 25.0% |
| !! | TTTTAAATATAGAGAAGTGG+GGG | - | chr6_3:58524799-58524818 | Msa0954980:intron | 25.0% |
| ! | ATTGAAAAATCAAAGTGGAA+TGG | - | chr6_3:58525151-58525170 | Msa0954980:intron | 25.0% |
| ! | AGAAAAATAACGGTAATTCA+TGG | - | chr6_3:58525208-58525227 | Msa0954980:intron | 25.0% |
| !!! | TCTTCATGTTTTTGAGTAAT+TGG | + | chr6_3:58525442-58525461 | None:intergenic | 25.0% |
| !! | TTAATTTTTACCTGTTCTAC+TGG | + | chr6_3:58525598-58525617 | None:intergenic | 25.0% |
| ! | AGTAGAACAGGTAAAAATTA+AGG | - | chr6_3:58525597-58525616 | Msa0954980:intron | 25.0% |
| !!! | AAATTAAGGAGTTTTGAACT+TGG | - | chr6_3:58525611-58525630 | Msa0954980:intron | 25.0% |
| ! | TTTGGATACTTATTGATCTT+TGG | - | chr6_3:58526900-58526919 | Msa0954980:intron | 25.0% |
| ! | AACTACATACAGCTAAATTT+GGG | + | chr6_3:58526970-58526989 | None:intergenic | 25.0% |
| ! | AAACTACATACAGCTAAATT+TGG | + | chr6_3:58526971-58526990 | None:intergenic | 25.0% |
| !! | CAGTGACTTACATTAATTTT+GGG | - | chr6_3:58527056-58527075 | Msa0954980:intron | 25.0% |
| !!! | TTTTTTTTCTTCCAACATCA+CGG | - | chr6_3:58527089-58527108 | Msa0954980:intron | 25.0% |
| ! | AAAGTATGGAATATCAACTT+TGG | - | chr6_3:58527319-58527338 | Msa0954980:intron | 25.0% |
| ! | AAGTATGGAATATCAACTTT+GGG | - | chr6_3:58527320-58527339 | Msa0954980:intron | 25.0% |
| ! | GTTTATATTATCTTACCAAC+AGG | + | chr6_3:58527784-58527803 | None:intergenic | 25.0% |
| ! | ACAATCATACAAATAAGCAA+AGG | + | chr6_3:58527869-58527888 | None:intergenic | 25.0% |
| !! | ATGATTGTTGCACAATATTT+TGG | - | chr6_3:58527881-58527900 | Msa0954980:CDS | 25.0% |
| !!! | AAAGATTCTGAAAGTGATTT+TGG | + | chr6_3:58528003-58528022 | None:intergenic | 25.0% |
| ! | AAAATCACTTTCAGAATCTT+TGG | - | chr6_3:58528002-58528021 | Msa0954980:intron | 25.0% |
| ! | CATTAAAAGATAATAAGGGA+TGG | + | chr6_3:58528278-58528297 | None:intergenic | 25.0% |
| AAATGAAACATCAGTGTCTA+AGG | + | chr6_3:58523245-58523264 | None:intergenic | 30.0% | |
| ! | GTGCTGTAAAAATTTGTTTC+AGG | - | chr6_3:58523382-58523401 | Msa0954980:intron | 30.0% |
| ! | ACATCATAGAAACGTTTTCT+AGG | + | chr6_3:58523413-58523432 | None:intergenic | 30.0% |
| !!! | TATGGTGATGACTTCTTTTT+TGG | - | chr6_3:58523469-58523488 | Msa0954980:intron | 30.0% |
| CACCTGATTTATCTACTAAA+AGG | - | chr6_3:58523543-58523562 | Msa0954980:CDS | 30.0% | |
| ! | GTCCTTTTAGTAGATAAATC+AGG | + | chr6_3:58523548-58523567 | None:intergenic | 30.0% |
| !! | AATTTTGGAGACTCTTCTTA+AGG | + | chr6_3:58523766-58523785 | None:intergenic | 30.0% |
| TCTCAAAGATGAATTTGACT+TGG | - | chr6_3:58523785-58523804 | Msa0954980:intron | 30.0% | |
| !! | AAGATGAATTTGACTTGGTA+TGG | - | chr6_3:58523790-58523809 | Msa0954980:intron | 30.0% |
| ATTTCCTTCTAATTTGGATG+TGG | - | chr6_3:58523986-58524005 | Msa0954980:CDS | 30.0% | |
| TTTACCACATCCAAATTAGA+AGG | + | chr6_3:58523993-58524012 | None:intergenic | 30.0% | |
| ATCCAAATTCGTGTTAATGT+TGG | - | chr6_3:58524065-58524084 | Msa0954980:intron | 30.0% | |
| TTTACAAAAAATGGCTTGAG+TGG | - | chr6_3:58524208-58524227 | Msa0954980:CDS | 30.0% | |
| !!! | TTTTTTGTGTATTTGTGAGG+GGG | + | chr6_3:58524250-58524269 | None:intergenic | 30.0% |
| !!! | AAGTACAACCCCTTTTTTTT+TGG | - | chr6_3:58524363-58524382 | Msa0954980:CDS | 30.0% |
| CCACAAATGACCAAAAAAAA+AGG | + | chr6_3:58524376-58524395 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTTTGGTCATTTG+TGG | - | chr6_3:58524373-58524392 | Msa0954980:intron | 30.0% |
| !!! | TTTTTTTTGGTCATTTGTGG+TGG | - | chr6_3:58524376-58524395 | Msa0954980:intron | 30.0% |
| !!! | TGTTAGTTGCTTTTGGTTTT+TGG | + | chr6_3:58524403-58524422 | None:intergenic | 30.0% |
| AAAAACAAGTTCCTTTGTAG+CGG | + | chr6_3:58524460-58524479 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGTTGCATTAC+CGG | - | chr6_3:58524476-58524495 | Msa0954980:intron | 30.0% |
| !! | ATCGTCCCCATTTTTAAAAA+AGG | + | chr6_3:58524557-58524576 | None:intergenic | 30.0% |
| CATGTCAACAATAAAACACT+AGG | + | chr6_3:58524731-58524750 | None:intergenic | 30.0% | |
| ATATTGCATATTATATGCGG+TGG | + | chr6_3:58524846-58524865 | None:intergenic | 30.0% | |
| GGGATATTGCATATTATATG+CGG | + | chr6_3:58524849-58524868 | None:intergenic | 30.0% | |
| !! | ACGTCAAAAGTATCTCAAAA+AGG | - | chr6_3:58524981-58525000 | Msa0954980:intron | 30.0% |
| ! | AAAGTATCTCAAAAAGGTGT+TGG | - | chr6_3:58524987-58525006 | Msa0954980:intron | 30.0% |
| !! | AAGTATCTCAAAAAGGTGTT+GGG | - | chr6_3:58524988-58525007 | Msa0954980:intron | 30.0% |
| !!! | ATGTTTTTGAGTAATTGGCA+TGG | + | chr6_3:58525437-58525456 | None:intergenic | 30.0% |
| ATGAAGAAAACCAACTATAC+AGG | - | chr6_3:58525455-58525474 | Msa0954980:CDS | 30.0% | |
| TGAAGAAAACCAACTATACA+GGG | - | chr6_3:58525456-58525475 | Msa0954980:CDS | 30.0% | |
| ! | AAGTAACTTCACGAAGTATT+GGG | + | chr6_3:58525552-58525571 | None:intergenic | 30.0% |
| TACTTCTGCTTTACATTCAA+TGG | - | chr6_3:58525567-58525586 | Msa0954980:intron | 30.0% | |
| ACTTCTGCTTTACATTCAAT+GGG | - | chr6_3:58525568-58525587 | Msa0954980:intron | 30.0% | |
| AATCGATGATTTCACAAGAT+TGG | - | chr6_3:58525703-58525722 | Msa0954980:intron | 30.0% | |
| !!! | TGATTTCACAAGATTGGTTT+TGG | - | chr6_3:58525709-58525728 | Msa0954980:intron | 30.0% |
| !!! | TTGTTTGGTTCTACTTTTGT+AGG | + | chr6_3:58525894-58525913 | None:intergenic | 30.0% |
| GGAAAATGTAAGTGTTTGTT+TGG | + | chr6_3:58525909-58525928 | None:intergenic | 30.0% | |
| !! | AACTTTTGGGAAGGATTTTT+TGG | + | chr6_3:58525930-58525949 | None:intergenic | 30.0% |
| TTAAATAAGTGGCTATGATG+TGG | - | chr6_3:58526253-58526272 | Msa0954980:intron | 30.0% | |
| !!! | GCTTTTTTGGTAAACAAAGA+TGG | - | chr6_3:58526317-58526336 | Msa0954980:intron | 30.0% |
| TCAATATGCAAAGAAAATCG+AGG | - | chr6_3:58526501-58526520 | Msa0954980:intron | 30.0% | |
| CAATATGCAAAGAAAATCGA+GGG | - | chr6_3:58526502-58526521 | Msa0954980:intron | 30.0% | |
| GAGAGTTCTCATGATAAATT+TGG | + | chr6_3:58526727-58526746 | None:intergenic | 30.0% | |
| ACTACATACAGCTAAATTTG+GGG | + | chr6_3:58526969-58526988 | None:intergenic | 30.0% | |
| GAATATATAAAGCGCATGTT+TGG | - | chr6_3:58527009-58527028 | Msa0954980:intron | 30.0% | |
| ! | GCAGTGACTTACATTAATTT+TGG | - | chr6_3:58527055-58527074 | Msa0954980:intron | 30.0% |
| !! | GTGTTTTGTTGCAATATTGA+AGG | - | chr6_3:58527204-58527223 | Msa0954980:intron | 30.0% |
| CAGATGCCATAAATACATTT+CGG | + | chr6_3:58527289-58527308 | None:intergenic | 30.0% | |
| TCTGATGAATCATCAAAGTA+TGG | - | chr6_3:58527305-58527324 | Msa0954980:intron | 30.0% | |
| ! | AACTTTGGGAAAAGAGTTTA+TGG | - | chr6_3:58527334-58527353 | Msa0954980:intron | 30.0% |
| GCTACAAAAGACAAAATAGA+AGG | + | chr6_3:58527380-58527399 | None:intergenic | 30.0% | |
| ACATAATTTAGGAGAATGAG+TGG | + | chr6_3:58527435-58527454 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTGATCCAGAAAG+TGG | - | chr6_3:58527458-58527477 | Msa0954980:intron | 30.0% |
| ! | TTTTTCTTGATCCAGAAAGT+GGG | - | chr6_3:58527459-58527478 | Msa0954980:intron | 30.0% |
| CGAAATCAAAATATTAGTCG+TGG | - | chr6_3:58528185-58528204 | Msa0954980:CDS | 30.0% | |
| TAAAAGATAATAAGGGATGG+TGG | + | chr6_3:58528275-58528294 | None:intergenic | 30.0% | |
| AAGCTTCAAAGTTAGTTGAT+TGG | + | chr6_3:58528317-58528336 | None:intergenic | 30.0% | |
| TTCATGTGATTTATGTTTCC+AGG | - | chr6_3:58528335-58528354 | Msa0954980:CDS | 30.0% | |
| GTTGTTACTAAGAATGGTGT+TGG | - | chr6_3:58523431-58523450 | Msa0954980:intron | 35.0% | |
| TGGTTTAGCATTTGTGAGTA+TGG | - | chr6_3:58523451-58523470 | Msa0954980:intron | 35.0% | |
| !!! | GTGATGACTTCTTTTTTGGA+TGG | - | chr6_3:58523473-58523492 | Msa0954980:intron | 35.0% |
| CTACTAAAAGGACAATTCCT+TGG | - | chr6_3:58523555-58523574 | Msa0954980:CDS | 35.0% | |
| TTGAAGGGATTTGTATACCA+AGG | + | chr6_3:58523575-58523594 | None:intergenic | 35.0% | |
| TCGCGAAAGTTGTCTAAATT+TGG | + | chr6_3:58523855-58523874 | None:intergenic | 35.0% | |
| CACCAACATTAACACGAATT+TGG | + | chr6_3:58524070-58524089 | None:intergenic | 35.0% | |
| CAAATTCGTGTTAATGTTGG+TGG | - | chr6_3:58524068-58524087 | Msa0954980:intron | 35.0% | |
| AAACCAAAAGCAACTAACAC+TGG | - | chr6_3:58524404-58524423 | Msa0954980:intron | 35.0% | |
| !! | AAACCAGTGTTAGTTGCTTT+TGG | + | chr6_3:58524410-58524429 | None:intergenic | 35.0% |
| !! | TTTTAAAAATGGGGACGATG+TGG | - | chr6_3:58524558-58524577 | Msa0954980:intron | 35.0% |
| !! | TTTTAAAAATGGGGACGATG+TGG | - | chr6_3:58524558-58524577 | Msa0954980:intron | 35.0% |
| AATATCCCTAGCTAAACTCA+GGG | - | chr6_3:58524861-58524880 | Msa0954980:intron | 35.0% | |
| ACACAAAAATTAGATTGGCG+AGG | - | chr6_3:58524925-58524944 | Msa0954980:intron | 35.0% | |
| AAAAATTAGATTGGCGAGGA+CGG | - | chr6_3:58524929-58524948 | Msa0954980:intron | 35.0% | |
| TTTCTCTCTAAGCAACATTG+TGG | + | chr6_3:58525100-58525119 | None:intergenic | 35.0% | |
| ! | ACAATGTTGCTTAGAGAGAA+AGG | - | chr6_3:58525099-58525118 | Msa0954980:intron | 35.0% |
| !! | TTAACTTGTTGTCAACTTCC+AGG | - | chr6_3:58525322-58525341 | Msa0954980:intron | 35.0% |
| ! | TTCTCTTGAAGAGCGTAATA+AGG | - | chr6_3:58525375-58525394 | Msa0954980:intron | 35.0% |
| ! | TTGAAGAGCGTAATAAGGTA+TGG | - | chr6_3:58525380-58525399 | Msa0954980:intron | 35.0% |
| AAAACCAACTATACAGGGAA+GGG | - | chr6_3:58525461-58525480 | Msa0954980:CDS | 35.0% | |
| !! | AGTAACTTCACGAAGTATTG+GGG | + | chr6_3:58525551-58525570 | None:intergenic | 35.0% |
| GAAGTAACTTCACGAAGTAT+TGG | + | chr6_3:58525553-58525572 | None:intergenic | 35.0% | |
| TGTATGACAATGACTTTGTG+TGG | - | chr6_3:58525650-58525669 | Msa0954980:intron | 35.0% | |
| TTTACACACGTGAAACTGTT+AGG | - | chr6_3:58526113-58526132 | Msa0954980:CDS | 35.0% | |
| TTACACACGTGAAACTGTTA+GGG | - | chr6_3:58526114-58526133 | Msa0954980:intron | 35.0% | |
| !!! | ACAGAAGCAACATGCTTTTT+TGG | - | chr6_3:58526304-58526323 | Msa0954980:intron | 35.0% |
| ! | ACAATTCCTAAGAGTGTGTT+TGG | - | chr6_3:58526355-58526374 | Msa0954980:intron | 35.0% |
| ! | GGATGTTGTTTACTTACAAG+AGG | - | chr6_3:58526932-58526951 | Msa0954980:intron | 35.0% |
| AAGGTACACATTAGATGATC+TGG | - | chr6_3:58527223-58527242 | Msa0954980:intron | 35.0% | |
| AGGTACACATTAGATGATCT+GGG | - | chr6_3:58527224-58527243 | Msa0954980:intron | 35.0% | |
| GAATGGCCGAAATGTATTTA+TGG | - | chr6_3:58527280-58527299 | Msa0954980:intron | 35.0% | |
| ATAGATAGCAGAAACCTGAT+AGG | + | chr6_3:58527410-58527429 | None:intergenic | 35.0% | |
| ! | GGGACATCAAGAATTGATTT+CGG | - | chr6_3:58527479-58527498 | Msa0954980:intron | 35.0% |
| !! | TGTTCTGGGGAAATGAAAAT+AGG | - | chr6_3:58527596-58527615 | Msa0954980:intron | 35.0% |
| !! | GTTCTGGGGAAATGAAAATA+GGG | - | chr6_3:58527597-58527616 | Msa0954980:intron | 35.0% |
| AAATTACTCGCAAAACCATC+AGG | + | chr6_3:58527658-58527677 | None:intergenic | 35.0% | |
| TAGCAGATAAGCCTAAGTAT+GGG | + | chr6_3:58527711-58527730 | None:intergenic | 35.0% | |
| ATAGCAGATAAGCCTAAGTA+TGG | + | chr6_3:58527712-58527731 | None:intergenic | 35.0% | |
| TTATCTGCTATAATTGCTGC+TGG | - | chr6_3:58527721-58527740 | Msa0954980:intron | 35.0% | |
| ATTATCTTACCAACAGGTTC+AGG | + | chr6_3:58527778-58527797 | None:intergenic | 35.0% | |
| !!! | CTCTGAAGTTTTTCTGGATT+TGG | + | chr6_3:58527976-58527995 | None:intergenic | 35.0% |
| !!! | GGTAATCTCTGAAGTTTTTC+TGG | + | chr6_3:58527982-58528001 | None:intergenic | 35.0% |
| ! | ATCTTTGGAAGCTCTTCATA+AGG | - | chr6_3:58528017-58528036 | Msa0954980:intron | 35.0% |
| !! | GCTGACTTTCTAGAGTTTAT+TGG | - | chr6_3:58528039-58528058 | Msa0954980:CDS | 35.0% |
| AGTAATGATCAATTTCAGCC+TGG | + | chr6_3:58528356-58528375 | None:intergenic | 35.0% | |
| TGATCATTACTCGAAGAACA+AGG | - | chr6_3:58528365-58528384 | Msa0954980:CDS | 35.0% | |
| !! | GATTGAGTTGAGTAAAGCAG+TGG | - | chr6_3:58523198-58523217 | Msa0954980:CDS | 40.0% |
| AGTGGAAGATGTTGAACTTG+TGG | - | chr6_3:58523216-58523235 | Msa0954980:CDS | 40.0% | |
| TTTGTGTACCATGCTTTACG+TGG | - | chr6_3:58524427-58524446 | Msa0954980:intron | 40.0% | |
| TTGTGTACCATGCTTTACGT+GGG | - | chr6_3:58524428-58524447 | Msa0954980:intron | 40.0% | |
| ! | TGTGGGGACATTTTCGTATT+GGG | - | chr6_3:58524596-58524615 | Msa0954980:intron | 40.0% |
| ! | ATATGTGAGCTCTAGCCAAT+AGG | + | chr6_3:58524780-58524799 | None:intergenic | 40.0% |
| CAATATCCCTAGCTAAACTC+AGG | - | chr6_3:58524860-58524879 | Msa0954980:intron | 40.0% | |
| ATATCCCTAGCTAAACTCAG+GGG | - | chr6_3:58524862-58524881 | Msa0954980:intron | 40.0% | |
| !! | AACTTCCAGGTATTGAATGC+AGG | - | chr6_3:58525335-58525354 | Msa0954980:intron | 40.0% |
| CAAATCCTGCATTCAATACC+TGG | + | chr6_3:58525343-58525362 | None:intergenic | 40.0% | |
| GAAAACCAACTATACAGGGA+AGG | - | chr6_3:58525460-58525479 | Msa0954980:CDS | 40.0% | |
| AATGGGAATTCCAGTAGAAC+AGG | - | chr6_3:58525585-58525604 | Msa0954980:intron | 40.0% | |
| ATTCAGAAAATGGGCCACAA+GGG | + | chr6_3:58525955-58525974 | None:intergenic | 40.0% | |
| TATTCAGAAAATGGGCCACA+AGG | + | chr6_3:58525956-58525975 | None:intergenic | 40.0% | |
| TTACATGCAGAAGCAGGAAA+AGG | - | chr6_3:58526034-58526053 | Msa0954980:CDS | 40.0% | |
| AGGAAAAGGTCAATTTGAGC+TGG | - | chr6_3:58526048-58526067 | Msa0954980:CDS | 40.0% | |
| !! | AGGTCAATTTGAGCTGGTTT+TGG | - | chr6_3:58526054-58526073 | Msa0954980:CDS | 40.0% |
| !!! | GGTCAATTTGAGCTGGTTTT+GGG | - | chr6_3:58526055-58526074 | Msa0954980:CDS | 40.0% |
| AGGGCAATTGCTAGAAAACA+TGG | - | chr6_3:58526133-58526152 | Msa0954980:intron | 40.0% | |
| GCAATGGATATTACCACACT+TGG | + | chr6_3:58526190-58526209 | None:intergenic | 40.0% | |
| ! | GCATGTTGCTTCTGTAGTTT+AGG | + | chr6_3:58526299-58526318 | None:intergenic | 40.0% |
| ! | TTCCTAAGAGTGTGTTTGGA+TGG | - | chr6_3:58526359-58526378 | Msa0954980:intron | 40.0% |
| ! | TCCTAAGAGTGTGTTTGGAT+GGG | - | chr6_3:58526360-58526379 | Msa0954980:intron | 40.0% |
| ! | TTAAAGTGTTCGAGTGCGTT+TGG | + | chr6_3:58526835-58526854 | None:intergenic | 40.0% |
| AAAGCGCATGTTTGGATGAA+TGG | - | chr6_3:58527017-58527036 | Msa0954980:intron | 40.0% | |
| ! | TTTTTCTTCCAACATCACGG+TGG | - | chr6_3:58527092-58527111 | Msa0954980:intron | 40.0% |
| ACATTAGATGATCTGGGTTC+TGG | - | chr6_3:58527230-58527249 | Msa0954980:intron | 40.0% | |
| TTGGGAAAAGAGTTTATGGC+TGG | - | chr6_3:58527338-58527357 | Msa0954980:intron | 40.0% | |
| ATTCTTGATGTCCCACTTTC+TGG | + | chr6_3:58527473-58527492 | None:intergenic | 40.0% | |
| ! | ATAATTGCTGCTGGCATTGA+TGG | - | chr6_3:58527730-58527749 | Msa0954980:intron | 40.0% |
| CAAGTTGCTAACTGCCATAA+AGG | - | chr6_3:58528065-58528084 | Msa0954980:CDS | 40.0% | |
| TACCTTTCGAATCGCCTTTA+TGG | + | chr6_3:58528082-58528101 | None:intergenic | 40.0% | |
| ACGACTGATATTTGTGACTG+TGG | + | chr6_3:58528113-58528132 | None:intergenic | 40.0% | |
| CAGTCACAAATATCAGTCGT+AGG | - | chr6_3:58528113-58528132 | Msa0954980:CDS | 40.0% | |
| ! | TTTTTGGATGGAGCTCCAGT+TGG | - | chr6_3:58523485-58523504 | Msa0954980:intron | 45.0% |
| GAACCTAAACCAGAACCAAC+TGG | + | chr6_3:58523503-58523522 | None:intergenic | 45.0% | |
| !! | GGTTCTGGTTTAGGTTCAGT+TGG | - | chr6_3:58523506-58523525 | Msa0954980:intron | 45.0% |
| GGTGATCTGAATCTACAACC+TGG | - | chr6_3:58523711-58523730 | Msa0954980:intron | 45.0% | |
| ATCTACAACCTGGTCATGCA+TGG | - | chr6_3:58523721-58523740 | Msa0954980:intron | 45.0% | |
| TCTACAACCTGGTCATGCAT+GGG | - | chr6_3:58523722-58523741 | Msa0954980:intron | 45.0% | |
| CAATATTCCCATGCATGACC+AGG | + | chr6_3:58523732-58523751 | None:intergenic | 45.0% | |
| ATGGGAATATTGCCCAAGAG+AGG | - | chr6_3:58523740-58523759 | Msa0954980:intron | 45.0% | |
| CTCTTCTTAAGGCCTCTCTT+GGG | + | chr6_3:58523755-58523774 | None:intergenic | 45.0% | |
| ACTCTTCTTAAGGCCTCTCT+TGG | + | chr6_3:58523756-58523775 | None:intergenic | 45.0% | |
| ACTTGGTATGGTGCACAACT+TGG | - | chr6_3:58523802-58523821 | Msa0954980:intron | 45.0% | |
| AAGGGGTTGTACTTTGCGAT+TGG | + | chr6_3:58524357-58524376 | None:intergenic | 45.0% | |
| ! | TGTTGTTGTTGCATTACCGG+CGG | - | chr6_3:58524479-58524498 | Msa0954980:intron | 45.0% |
| TGGCTTACAAGGACTTTGTG+TGG | - | chr6_3:58524578-58524597 | Msa0954980:intron | 45.0% | |
| GGCTTACAAGGACTTTGTGT+GGG | - | chr6_3:58524579-58524598 | Msa0954980:intron | 45.0% | |
| GCTTACAAGGACTTTGTGTG+GGG | - | chr6_3:58524580-58524599 | Msa0954980:intron | 45.0% | |
| ! | GTGTGGGGACATTTTCGTAT+TGG | - | chr6_3:58524595-58524614 | Msa0954980:intron | 45.0% |
| ! | GTGGGGACATTTTCGTATTG+GGG | - | chr6_3:58524597-58524616 | Msa0954980:intron | 45.0% |
| ACATCCCCTGAGTTTAGCTA+GGG | + | chr6_3:58524869-58524888 | None:intergenic | 45.0% | |
| AACATCCCCTGAGTTTAGCT+AGG | + | chr6_3:58524870-58524889 | None:intergenic | 45.0% | |
| CTTTCCCTTCCCTGTATAGT+TGG | + | chr6_3:58525468-58525487 | None:intergenic | 45.0% | |
| ACAGGGAAGGGAAAGAAGAA+TGG | - | chr6_3:58525473-58525492 | Msa0954980:CDS | 45.0% | |
| AGCAACATCAAATGCTGACG+AGG | + | chr6_3:58525527-58525546 | None:intergenic | 45.0% | |
| !! | ACAAGGGACAACTTTTGGGA+AGG | + | chr6_3:58525939-58525958 | None:intergenic | 45.0% |
| TTCCCAAAAGTTGTCCCTTG+TGG | - | chr6_3:58525938-58525957 | Msa0954980:intron | 45.0% | |
| TTGCAGTTACATGCAGAAGC+AGG | - | chr6_3:58526028-58526047 | Msa0954980:CDS | 45.0% | |
| !!! | TGAGCTGGTTTTGGGACATA+TGG | - | chr6_3:58526063-58526082 | Msa0954980:CDS | 45.0% |
| TCCAAAGTACGTACCAAGTG+TGG | - | chr6_3:58526174-58526193 | Msa0954980:intron | 45.0% | |
| ACCACACTTGGTACGTACTT+TGG | + | chr6_3:58526178-58526197 | None:intergenic | 45.0% | |
| TCCCATCCAAACACACTCTT+AGG | + | chr6_3:58526364-58526383 | None:intergenic | 45.0% | |
| GTTCGAGTGCGTTTGGATAA+AGG | + | chr6_3:58526828-58526847 | None:intergenic | 45.0% | |
| GCCATGTTCATCTAAGCTTG+TGG | - | chr6_3:58527255-58527274 | Msa0954980:intron | 45.0% | |
| GCCACAAGCTTAGATGAACA+TGG | + | chr6_3:58527259-58527278 | None:intergenic | 45.0% | |
| CATCTAAGCTTGTGGCAGAA+TGG | - | chr6_3:58527263-58527282 | Msa0954980:intron | 45.0% | |
| TTGTAGCACCACTTCCTATC+AGG | - | chr6_3:58527393-58527412 | Msa0954980:intron | 45.0% | |
| AGCAGAAACCTGATAGGAAG+TGG | + | chr6_3:58527404-58527423 | None:intergenic | 45.0% | |
| TATGCACCACTCCATGTGTT+CGG | + | chr6_3:58527574-58527593 | None:intergenic | 45.0% | |
| GAGTGGTGCATACATGTTCT+GGG | - | chr6_3:58527582-58527601 | Msa0954980:intron | 45.0% | |
| AGTGGTGCATACATGTTCTG+GGG | - | chr6_3:58527583-58527602 | Msa0954980:intron | 45.0% | |
| CTGGGGAAATGAAAATAGGG+AGG | - | chr6_3:58527600-58527619 | Msa0954980:intron | 45.0% | |
| GGTTCTGCAAACCCATACTT+AGG | - | chr6_3:58527697-58527716 | Msa0954980:intron | 45.0% | |
| !! | CTGGCATTGATGGTTTACGT+AGG | - | chr6_3:58527740-58527759 | Msa0954980:intron | 45.0% |
| CTTTCACTTCCTGAACCTGT+TGG | - | chr6_3:58527766-58527785 | Msa0954980:intron | 45.0% | |
| TGCCATAAAGGCGATTCGAA+AGG | - | chr6_3:58528077-58528096 | Msa0954980:CDS | 45.0% | |
| TCAGTCGTAGGATGAAGACT+AGG | - | chr6_3:58528125-58528144 | Msa0954980:CDS | 45.0% | |
| !!! | TTTTTTTATTTAATAAGAAA+AGG | + | chr6_3:58524532-58524551 | None:intergenic | 5.0% |
| !!! | CAAATTTTTAAAATTTTAAT+GGG | - | chr6_3:58526534-58526553 | Msa0954980:intron | 5.0% |
| !! | GCTCCAGTTGGTTCTGGTTT+AGG | - | chr6_3:58523497-58523516 | Msa0954980:intron | 50.0% |
| ACCATGCTTTACGTGGGCAA+AGG | - | chr6_3:58524434-58524453 | Msa0954980:intron | 50.0% | |
| ATGCTGACGAGGAGCAGTAA+GGG | + | chr6_3:58525516-58525535 | None:intergenic | 50.0% | |
| AATGCTGACGAGGAGCAGTA+AGG | + | chr6_3:58525517-58525536 | None:intergenic | 50.0% | |
| ! | GGCCACAAGGGACAACTTTT+GGG | + | chr6_3:58525943-58525962 | None:intergenic | 50.0% |
| ATCGATTGCAGCCGAACACA+TGG | - | chr6_3:58527560-58527579 | Msa0954980:intron | 50.0% | |
| GGAGTGGTGCATACATGTTC+TGG | - | chr6_3:58527581-58527600 | Msa0954980:intron | 50.0% | |
| AAACCATCAGGAGTTCCAGG+AGG | + | chr6_3:58527646-58527665 | None:intergenic | 50.0% | |
| GCAAAACCATCAGGAGTTCC+AGG | + | chr6_3:58527649-58527668 | None:intergenic | 50.0% | |
| ! | GATGGAGCTCCAGTTGGTTC+TGG | - | chr6_3:58523491-58523510 | Msa0954980:intron | 55.0% |
| TGGCTTGAGTGGTTCCTCTG+CGG | - | chr6_3:58524219-58524238 | Msa0954980:CDS | 55.0% | |
| GCCTTTGCCCACGTAAAGCA+TGG | + | chr6_3:58524438-58524457 | None:intergenic | 55.0% | |
| ! | GTTGCATTACCGGCGGACTT+AGG | - | chr6_3:58524486-58524505 | Msa0954980:intron | 55.0% |
| TGGGGACGATGTGGCTTACA+AGG | - | chr6_3:58524567-58524586 | Msa0954980:intron | 55.0% | |
| TGCTGACGAGGAGCAGTAAG+GGG | + | chr6_3:58525515-58525534 | None:intergenic | 55.0% | |
| ! | GGGCCACAAGGGACAACTTT+TGG | + | chr6_3:58525944-58525963 | None:intergenic | 55.0% |
| ACGGTGAACCACCGTGATGT+TGG | + | chr6_3:58527103-58527122 | None:intergenic | 55.0% | |
| TTGCAGCCGAACACATGGAG+TGG | - | chr6_3:58527565-58527584 | Msa0954980:intron | 55.0% | |
| GGAGGAGATGAAGCTCGCAA+TGG | + | chr6_3:58527628-58527647 | None:intergenic | 55.0% | |
| TTGCGAGCTTCATCTCCTCC+TGG | - | chr6_3:58527628-58527647 | Msa0954980:intron | 55.0% | |
| TCTCCTCCTGGAACTCCTGA+TGG | - | chr6_3:58527640-58527659 | Msa0954980:intron | 55.0% | |
| ! | GTGAGGGGGTTTTACCGCAG+AGG | + | chr6_3:58524236-58524255 | None:intergenic | 60.0% |
| GTGGGCAAAGGCCGCTACAA+AGG | - | chr6_3:58524446-58524465 | Msa0954980:intron | 60.0% | |
| TTGCAGCGACCTAAGTCCGC+CGG | + | chr6_3:58524498-58524517 | None:intergenic | 60.0% | |
| GCGGACTTAGGTCGCTGCAA+AGG | - | chr6_3:58524498-58524517 | Msa0954980:intron | 60.0% | |
| TGGGGACGATGTGGCTTGAG+TGG | - | chr6_3:58524664-58524683 | Msa0954980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 58523190 | 58528419 | 58523190 | ID=Msa0954980;Name=Msa0954980 |
| chr6_3 | mRNA | 58523190 | 58528419 | 58523190 | ID=Msa0954980-mRNA-1;Parent=Msa0954980;Name=Msa0954980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.55|0.4|1|1|1|10|0|453 |
| chr6_3 | exon | 58528300 | 58528419 | 58528300 | ID=Msa0954980-mRNA-1:exon:11579;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58528033 | 58528205 | 58528033 | ID=Msa0954980-mRNA-1:exon:11578;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58527803 | 58527923 | 58527803 | ID=Msa0954980-mRNA-1:exon:11577;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58526213 | 58526265 | 58526213 | ID=Msa0954980-mRNA-1:exon:11576;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58526003 | 58526132 | 58526003 | ID=Msa0954980-mRNA-1:exon:11575;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58525430 | 58525575 | 58525430 | ID=Msa0954980-mRNA-1:exon:11574;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58524195 | 58524383 | 58524195 | ID=Msa0954980-mRNA-1:exon:11573;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58523822 | 58524054 | 58523822 | ID=Msa0954980-mRNA-1:exon:11572;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58523511 | 58523644 | 58523511 | ID=Msa0954980-mRNA-1:exon:11571;Parent=Msa0954980-mRNA-1 |
| chr6_3 | exon | 58523190 | 58523252 | 58523190 | ID=Msa0954980-mRNA-1:exon:11570;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58528300 | 58528419 | 58528300 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58528033 | 58528205 | 58528033 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58527803 | 58527923 | 58527803 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58526213 | 58526265 | 58526213 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58526003 | 58526132 | 58526003 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58525430 | 58525575 | 58525430 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58524195 | 58524383 | 58524195 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58523822 | 58524054 | 58523822 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58523511 | 58523644 | 58523511 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| chr6_3 | CDS | 58523190 | 58523252 | 58523190 | ID=Msa0954980-mRNA-1:cds;Parent=Msa0954980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
