Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895500 | XP_003624512.1 | 97.674 | 86 | 2 | 0 | 1 | 86 | 1 | 86 | 6.32e-48 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895500 | G7KXA6 | 97.674 | 86 | 2 | 0 | 1 | 86 | 1 | 86 | 3.02e-48 | 163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375630 | Msa0895500 | 0.809617 | 1.731623e-50 | -8.615850e-47 |
| Msa0895500 | Msa1287980 | 0.815086 | 1.106926e-51 | -8.615850e-47 |
| Msa0895500 | Msa1373430 | -0.818677 | 1.729728e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895500 | MtrunA17_Chr7g0252261 | 97.674 | 86 | 2 | 0 | 1 | 86 | 1 | 86 | 5.81e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 121 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTCTTCTTCGTCTTCT+TGG | 0.109185 | 6_1:+83526196 | None:intergenic |
| TTAAACACAAAATCCCTTTA+TGG | 0.117425 | 6_1:+83523752 | None:intergenic |
| CACAAAACGAACGAGAAATT+TGG | 0.140303 | 6_1:+83526266 | None:intergenic |
| GAAACAGTTGCGGGAATTTC+AGG | 0.209974 | 6_1:+83524262 | None:intergenic |
| GAACTGATGTTGGAAATTTA+TGG | 0.238625 | 6_1:-83522031 | Msa0895500:three_prime_UTR |
| CTTCTCATAACATTTCTCTA+AGG | 0.321766 | 6_1:+83524214 | None:intergenic |
| ATAGGGATAAAATGTGGTAT+AGG | 0.322268 | 6_1:-83523617 | Msa0895500:three_prime_UTR |
| GAAGTGAATCAACCTGTTAC+TGG | 0.324666 | 6_1:-83522505 | Msa0895500:three_prime_UTR |
| ACTGTTGTGTTATGTGGTAC+TGG | 0.328590 | 6_1:-83523687 | Msa0895500:three_prime_UTR |
| TCAACAATTGGTTATTTGAT+TGG | 0.337133 | 6_1:+83522204 | None:intergenic |
| TCCTACAGATTACAATAATA+AGG | 0.343571 | 6_1:+83522157 | None:intergenic |
| TCCATTAGAATCAGTATAGA+AGG | 0.346478 | 6_1:+83522680 | None:intergenic |
| TGGGGATAATTTATGTGATT+AGG | 0.347979 | 6_1:-83524064 | Msa0895500:three_prime_UTR |
| TACCTTCTCGTTGAAGTTGA+TGG | 0.351373 | 6_1:+83523340 | None:intergenic |
| TATTGTAATCTGTAGGATCT+TGG | 0.354549 | 6_1:-83522151 | Msa0895500:three_prime_UTR |
| ATGGGAATTGATGAACCATT+AGG | 0.356352 | 6_1:+83523359 | None:intergenic |
| GTTGCTATGTTGATTATCTC+TGG | 0.357878 | 6_1:-83523833 | Msa0895500:three_prime_UTR |
| TGAGAGCTTGTTTGTTCGTT+CGG | 0.358040 | 6_1:+83526239 | None:intergenic |
| AATTGGAGCTAATGGTTCAT+AGG | 0.364849 | 6_1:-83522270 | Msa0895500:three_prime_UTR |
| TTCTTCTTCGTCTTCTTGGC+TGG | 0.369574 | 6_1:+83526200 | None:intergenic |
| ACCTTCTATACTGATTCTAA+TGG | 0.373760 | 6_1:-83522681 | Msa0895500:three_prime_UTR |
| CTATATTGTTGTCGCTGCTT+TGG | 0.376002 | 6_1:-83523900 | Msa0895500:three_prime_UTR |
| TTTGATATTTGTAGCCATAA+AGG | 0.379342 | 6_1:-83523766 | Msa0895500:three_prime_UTR |
| TCAGGAAAATTCTCAACAAT+TGG | 0.379819 | 6_1:+83522192 | None:intergenic |
| CAGGGTAATATTCCAGTAAC+AGG | 0.383246 | 6_1:+83522493 | None:intergenic |
| ACAAAACGAACGAGAAATTT+GGG | 0.391326 | 6_1:+83526267 | None:intergenic |
| TTGATATTTGTAGCCATAAA+GGG | 0.391441 | 6_1:-83523765 | Msa0895500:three_prime_UTR |
| CTGAAGGGAAGAAAGAATTC+AGG | 0.392900 | 6_1:+83526023 | None:intergenic |
| CAATTGTCCATCTACGATAC+TGG | 0.393539 | 6_1:+83522288 | None:intergenic |
| GGATTTGATTCCAATCTTCT+CGG | 0.397739 | 6_1:-83524019 | Msa0895500:three_prime_UTR |
| ATGTTTATTGTTGTGTTTGA+AGG | 0.403921 | 6_1:-83524112 | Msa0895500:three_prime_UTR |
| AAACAAGTTTCAAGTTTCCT+AGG | 0.408623 | 6_1:+83523437 | None:intergenic |
| TGGGAATTGATGAACCATTA+GGG | 0.409218 | 6_1:+83523360 | None:intergenic |
| TAGGGATAAAATGTGGTATA+GGG | 0.409761 | 6_1:-83523616 | Msa0895500:three_prime_UTR |
| TCCACCAGCAAATCAATTCA+TGG | 0.417113 | 6_1:-83523192 | Msa0895500:three_prime_UTR |
| CTCTCTCCGCATCTCCCTCA+TGG | 0.435359 | 6_1:-83526145 | Msa0895500:CDS |
| TTAACGGCTGAAACAGTTGC+GGG | 0.435505 | 6_1:+83524253 | None:intergenic |
| ACTCCATCGTCAATCGGTAT+AGG | 0.435758 | 6_1:+83522753 | None:intergenic |
| GAATTCAGGGTGGATGGAAA+AGG | 0.437093 | 6_1:+83526037 | None:intergenic |
| AGCTTACTCAATATATCAAC+AGG | 0.438055 | 6_1:-83523396 | Msa0895500:three_prime_UTR |
| TTGGTCTGCAAGGTTATCTC+AGG | 0.446970 | 6_1:-83523881 | Msa0895500:three_prime_UTR |
| ATAAGGCTCAACATAAAATC+AGG | 0.447278 | 6_1:+83522174 | None:intergenic |
| GAAACTTGTTTACTCAATGA+AGG | 0.447552 | 6_1:-83523425 | Msa0895500:three_prime_UTR |
| AGGGATATAGCACACAGGTC+AGG | 0.448220 | 6_1:-83523487 | Msa0895500:three_prime_UTR |
| ATATCCATGAATTGATTTGC+TGG | 0.450259 | 6_1:+83523188 | None:intergenic |
| ATATAAACCTCCGAGAAGAT+TGG | 0.453562 | 6_1:+83524009 | None:intergenic |
| AGATGGACAATTGGAGCTAA+TGG | 0.455094 | 6_1:-83522278 | Msa0895500:three_prime_UTR |
| ACCTTCTCGTTGAAGTTGAT+GGG | 0.460309 | 6_1:+83523341 | None:intergenic |
| CTATAGAAAAGACTGGAACT+TGG | 0.462140 | 6_1:-83522527 | Msa0895500:three_prime_UTR |
| TGGAAGAAGGCGGTGGGATG+AGG | 0.464315 | 6_1:+83526084 | None:intergenic |
| GGTGGTTCCAGTATCGTAGA+TGG | 0.467348 | 6_1:-83522295 | Msa0895500:three_prime_UTR |
| AATTCAGGGTGGATGGAAAA+GGG | 0.475500 | 6_1:+83526038 | None:intergenic |
| ATTGTTACTGTTGTGTTATG+TGG | 0.477623 | 6_1:-83523693 | Msa0895500:three_prime_UTR |
| TGGATGTGATTTCATCGAAC+GGG | 0.483198 | 6_1:-83522661 | Msa0895500:intron |
| TTGCCCACTCCATCGTCAAT+CGG | 0.484331 | 6_1:+83522747 | None:intergenic |
| TTCTTGTTTCAGATCAACCT+TGG | 0.485803 | 6_1:-83522373 | Msa0895500:intron |
| CAGTATCGTAGATGGACAAT+TGG | 0.492310 | 6_1:-83522287 | Msa0895500:three_prime_UTR |
| AAAACATACACTAACATCAT+GGG | 0.494562 | 6_1:+83522060 | None:intergenic |
| CTGTTGTGTTATGTGGTACT+GGG | 0.496530 | 6_1:-83523686 | Msa0895500:three_prime_UTR |
| AGATCTGCGTTGATCGGAGG+TGG | 0.496546 | 6_1:+83526064 | None:intergenic |
| AAATGTGGTATAGGGATACT+TGG | 0.508414 | 6_1:-83523608 | Msa0895500:three_prime_UTR |
| CTTGTTTACTCAATGAAGGA+AGG | 0.509917 | 6_1:-83523421 | Msa0895500:three_prime_UTR |
| GACGAAGAAGAAGATGTTGA+GGG | 0.514634 | 6_1:-83526189 | Msa0895500:exon |
| CAAATATCAAATCCCAAAGA+AGG | 0.519162 | 6_1:+83523778 | None:intergenic |
| AGACGAAGAAGAAGATGTTG+AGG | 0.520129 | 6_1:-83526190 | Msa0895500:exon |
| CGTTGATCGGAGGTGGAAGA+AGG | 0.521939 | 6_1:+83526071 | None:intergenic |
| AGAACAGCAGTTACCTCTGA+AGG | 0.522143 | 6_1:+83526007 | None:intergenic |
| TTCTCATAACATTTCTCTAA+GGG | 0.522572 | 6_1:+83524215 | None:intergenic |
| TCGGAGGTGGAAGAAGGCGG+TGG | 0.523668 | 6_1:+83526077 | None:intergenic |
| GATACATTTGAAGTAGGCCT+AGG | 0.533479 | 6_1:-83523454 | Msa0895500:three_prime_UTR |
| AAGAAAGAATTCAGGGTGGA+TGG | 0.537345 | 6_1:+83526031 | None:intergenic |
| GAGGTTCTTAGAGAGGAAAG+AGG | 0.538078 | 6_1:+83526103 | None:intergenic |
| TGAAGGGAAGAAAGAATTCA+GGG | 0.541633 | 6_1:+83526024 | None:intergenic |
| TATCTCTTAGGTAAATTCCA+AGG | 0.542844 | 6_1:+83522356 | None:intergenic |
| CAGAGTGATACATTTGAAGT+AGG | 0.544829 | 6_1:-83523460 | Msa0895500:three_prime_UTR |
| GTTTGAAGTAGAATTGAAGA+TGG | 0.551211 | 6_1:-83523953 | Msa0895500:three_prime_UTR |
| CGGAGGTGGAAGAAGGCGGT+GGG | 0.553191 | 6_1:+83526078 | None:intergenic |
| GGGATATAGCACACAGGTCA+GGG | 0.556945 | 6_1:-83523486 | Msa0895500:three_prime_UTR |
| TGTCGCTGCTTTGGTCTGCA+AGG | 0.561242 | 6_1:-83523891 | Msa0895500:three_prime_UTR |
| CTTAGAGAGGAAAGAGGAGG+CGG | 0.561712 | 6_1:+83526109 | None:intergenic |
| GGGGTCAGATCTGCGTTGAT+CGG | 0.562035 | 6_1:+83526058 | None:intergenic |
| TTCGAGACTATAGAAAAGAC+TGG | 0.564824 | 6_1:-83522534 | Msa0895500:three_prime_UTR |
| TTTATGAATTTCATTATTTG+GGG | 0.569988 | 6_1:-83524082 | Msa0895500:three_prime_UTR |
| GAATTCTTTCTTCCCTTCAG+AGG | 0.570684 | 6_1:-83526020 | Msa0895500:intron |
| TCCCATCAACTTCAACGAGA+AGG | 0.581047 | 6_1:-83523342 | Msa0895500:intron |
| TGGTGGACTTCATGCACGAT+TGG | 0.585155 | 6_1:+83523208 | None:intergenic |
| TTGTTTACTCAATGAAGGAA+GGG | 0.586682 | 6_1:-83523420 | Msa0895500:three_prime_UTR |
| CAGACTACCAGACTGTTCAA+AGG | 0.587564 | 6_1:-83522920 | Msa0895500:three_prime_UTR |
| TAAATCAGTGTTATCTCACA+AGG | 0.588977 | 6_1:+83522108 | None:intergenic |
| GCCTTATTATTGTAATCTGT+AGG | 0.591084 | 6_1:-83522158 | Msa0895500:three_prime_UTR |
| AATGACGCAGCAGTCAAGCA+TGG | 0.597254 | 6_1:-83524175 | Msa0895500:three_prime_UTR |
| ATGGATGTGATTTCATCGAA+CGG | 0.598964 | 6_1:-83522662 | Msa0895500:three_prime_UTR |
| GTCAGATCTGCGTTGATCGG+AGG | 0.599812 | 6_1:+83526061 | None:intergenic |
| TCCATGAATTGATTTGCTGG+TGG | 0.600258 | 6_1:+83523191 | None:intergenic |
| GGGATACTTGGTGAACAACC+AGG | 0.600470 | 6_1:-83523596 | Msa0895500:intron |
| TGTATTGGTAGATAGGTCTG+TGG | 0.608262 | 6_1:-83522317 | Msa0895500:three_prime_UTR |
| ACGCAGCAGTCAAGCATGGA+GGG | 0.608771 | 6_1:-83524171 | Msa0895500:three_prime_UTR |
| TTTAACGGCTGAAACAGTTG+CGG | 0.612184 | 6_1:+83524252 | None:intergenic |
| GGTCCTCGCAAAACTGTGAG+AGG | 0.622630 | 6_1:+83523229 | None:intergenic |
| TGATGTTGGAAATTTATGGA+AGG | 0.628414 | 6_1:-83522027 | Msa0895500:three_prime_UTR |
| GTATTGGTAGATAGGTCTGT+GGG | 0.632157 | 6_1:-83522316 | Msa0895500:three_prime_UTR |
| ATTCAGGGTGGATGGAAAAG+GGG | 0.632839 | 6_1:+83526039 | None:intergenic |
| AGAGGAAAGAGGAGGCGGCG+TGG | 0.637222 | 6_1:+83526114 | None:intergenic |
| AGACCTCCATGAGGGAGATG+CGG | 0.642073 | 6_1:+83526139 | None:intergenic |
| ATACCGATTGACGATGGAGT+GGG | 0.644284 | 6_1:-83522750 | Msa0895500:three_prime_UTR |
| GTGGGATGAGGTTCTTAGAG+AGG | 0.644782 | 6_1:+83526096 | None:intergenic |
| GAACAGCAGTTACCTCTGAA+GGG | 0.648159 | 6_1:+83526008 | None:intergenic |
| TGATCGGAGGTGGAAGAAGG+CGG | 0.650837 | 6_1:+83526074 | None:intergenic |
| TTTGATTCCAATCTTCTCGG+AGG | 0.652976 | 6_1:-83524016 | Msa0895500:three_prime_UTR |
| GCGTGGTAAGACCTCCATGA+GGG | 0.655193 | 6_1:+83526131 | None:intergenic |
| AATCAATTCATGGATATACC+AGG | 0.656383 | 6_1:-83523182 | Msa0895500:intron |
| TATACCGATTGACGATGGAG+TGG | 0.662502 | 6_1:-83522751 | Msa0895500:three_prime_UTR |
| AAACATACACTAACATCATG+GGG | 0.662611 | 6_1:+83522061 | None:intergenic |
| GTTCTTAGAGAGGAAAGAGG+AGG | 0.672475 | 6_1:+83526106 | None:intergenic |
| GACGCAGCAGTCAAGCATGG+AGG | 0.677668 | 6_1:-83524172 | Msa0895500:three_prime_UTR |
| TCTCCGCATCTCCCTCATGG+AGG | 0.691735 | 6_1:-83526142 | Msa0895500:CDS |
| GGACCTATACCGATTGACGA+TGG | 0.693818 | 6_1:-83522756 | Msa0895500:three_prime_UTR |
| TTGGTAGATAGGTCTGTGGG+TGG | 0.700617 | 6_1:-83522313 | Msa0895500:three_prime_UTR |
| CCGATAGGGATATAGCACAC+AGG | 0.721842 | 6_1:-83523492 | Msa0895500:intron |
| GGCGTGGTAAGACCTCCATG+AGG | 0.730085 | 6_1:+83526130 | None:intergenic |
| AGGGAAGAAAGAATTCAGGG+TGG | 0.792067 | 6_1:+83526027 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATGAATTTCATTATT+TGG | - | chr6_1:83522491-83522510 | Msa0895500:intron | 10.0% |
| !!! | TTTTATGAATTTCATTATTT+GGG | - | chr6_1:83522492-83522511 | Msa0895500:intron | 10.0% |
| !!! | AACAAAAAAATACTTTTTTT+AGG | + | chr6_1:83522758-83522777 | None:intergenic | 10.0% |
| !! | AATCAAATTAAATCAATTAA+TGG | + | chr6_1:83523978-83523997 | None:intergenic | 10.0% |
| !!! | TTTTTATGAATTTCATTATT+TGG | - | chr6_1:83522491-83522510 | Msa0895500:intron | 10.0% |
| !!! | TTTTATGAATTTCATTATTT+GGG | - | chr6_1:83522492-83522511 | Msa0895500:intron | 10.0% |
| !! | TTTATGAATTTCATTATTTG+GGG | - | chr6_1:83522493-83522512 | Msa0895500:intron | 15.0% |
| !!! | TTTTAGTTGTTACTTTTTTA+TGG | - | chr6_1:83523151-83523170 | Msa0895500:intron | 15.0% |
| !!! | TTTAGTTGTTACTTTTTTAT+GGG | - | chr6_1:83523152-83523171 | Msa0895500:intron | 15.0% |
| !!! | TGCTATCTTAAAAATTTTAT+CGG | - | chr6_1:83523496-83523515 | Msa0895500:intron | 15.0% |
| !! | ATTTATTAAGTTTGAATAGA+AGG | + | chr6_1:83523820-83523839 | None:intergenic | 15.0% |
| !! | ACAACAATAAACATAAAAAA+GGG | + | chr6_1:83522457-83522476 | None:intergenic | 15.0% |
| !! | TTTATGAATTTCATTATTTG+GGG | - | chr6_1:83522493-83522512 | Msa0895500:intron | 15.0% |
| !! | TTAAGAAAACAAATAAAACT+TGG | - | chr6_1:83525276-83525295 | Msa0895500:intron | 15.0% |
| !!! | ATTTGATTCGTTTTTTGTTA+GGG | - | chr6_1:83522403-83522422 | Msa0895500:intron | 20.0% |
| !!! | CTAGTTTGTTAAATGTTTTA+CGG | - | chr6_1:83522848-83522867 | Msa0895500:intron | 20.0% |
| !!! | ATAAAACCAGAGTTTTAAAA+AGG | + | chr6_1:83522976-83522995 | None:intergenic | 20.0% |
| !!! | TTTTTAAAACTCTGGTTTTA+TGG | - | chr6_1:83522975-83522994 | Msa0895500:intron | 20.0% |
| !!! | TTATGGTTAAATGTTTTTTG+TGG | - | chr6_1:83522992-83523011 | Msa0895500:intron | 20.0% |
| !!! | ATTTTAAACCATTATGATTG+AGG | - | chr6_1:83523020-83523039 | Msa0895500:intron | 20.0% |
| !! | ATTATGATTGAGGTATAATT+CGG | - | chr6_1:83523030-83523049 | Msa0895500:intron | 20.0% |
| !! | TTCAAAAACAACAGATAATT+AGG | + | chr6_1:83523250-83523269 | None:intergenic | 20.0% |
| !! | AAACCAATAAGTAACTATAA+GGG | + | chr6_1:83523311-83523330 | None:intergenic | 20.0% |
| !!! | ACTTTAAAAGACATGTATAA+AGG | - | chr6_1:83523341-83523360 | Msa0895500:intron | 20.0% |
| !!! | AATAGTCTTGTTATTCATTT+AGG | - | chr6_1:83523401-83523420 | Msa0895500:three_prime_UTR | 20.0% |
| !! | AATTATTCTATGTGTAGATA+AGG | - | chr6_1:83523776-83523795 | Msa0895500:three_prime_UTR | 20.0% |
| !! | CAACAATAAACATAAAAAAG+GGG | + | chr6_1:83524196-83524215 | None:intergenic | 20.0% |
| !! | CACAACAATAAACATAAAAA+AGG | + | chr6_1:83522458-83522477 | None:intergenic | 20.0% |
| !!! | CAACATCAATCTAATTTTTT+AGG | + | chr6_1:83524466-83524485 | None:intergenic | 20.0% |
| !!! | AAAAATAGATTTTCCTTCTT+TGG | - | chr6_1:83524524-83524543 | Msa0895500:intron | 20.0% |
| !!! | AAAATAGATTTTCCTTCTTT+GGG | - | chr6_1:83524525-83524544 | Msa0895500:intron | 20.0% |
| !!! | AATAGAGCACTTTTTTTTAT+AGG | - | chr6_1:83524680-83524699 | Msa0895500:intron | 20.0% |
| !!! | ATAGAGCACTTTTTTTTATA+GGG | - | chr6_1:83524681-83524700 | Msa0895500:intron | 20.0% |
| !!! | TTTTTTATAGGGATAAAATG+TGG | - | chr6_1:83524692-83524711 | Msa0895500:intron | 20.0% |
| !! | TATTATGTACTAAATAACCA+TGG | + | chr6_1:83525210-83525229 | None:intergenic | 20.0% |
| !! | CAATTATTGATATAGCTATA+TGG | + | chr6_1:83525357-83525376 | None:intergenic | 20.0% |
| !!! | TTTTTTATTAGAACTGATGT+TGG | - | chr6_1:83526274-83526293 | Msa0895500:five_prime_UTR | 20.0% |
| !!! | GATTTGATTCGTTTTTTGTT+AGG | - | chr6_1:83522402-83522421 | Msa0895500:intron | 25.0% |
| ! | ATGTTTATTGTTGTGTTTGA+AGG | - | chr6_1:83522463-83522482 | Msa0895500:intron | 25.0% |
| !! | GTTTGAAGTAGAATTGAAAA+TGG | - | chr6_1:83522622-83522641 | Msa0895500:intron | 25.0% |
| !! | ATCTTCTATTGTTTTCCTTT+TGG | - | chr6_1:83522659-83522678 | Msa0895500:intron | 25.0% |
| !! | ATGTTAATTTTTGCGCTATT+TGG | - | chr6_1:83522713-83522732 | Msa0895500:three_prime_UTR | 25.0% |
| ! | AAAACATTTAACAAACTAGG+TGG | + | chr6_1:83522847-83522866 | None:intergenic | 25.0% |
| ! | CGTAAAACATTTAACAAACT+AGG | + | chr6_1:83522850-83522869 | None:intergenic | 25.0% |
| !! | TTTGTTAAATGTTTTACGGA+AGG | - | chr6_1:83522852-83522871 | Msa0895500:intron | 25.0% |
| ! | GAATTATACCTCAATCATAA+TGG | + | chr6_1:83523031-83523050 | None:intergenic | 25.0% |
| ! | TTAGAAAACAACAGATGATA+AGG | + | chr6_1:83523186-83523205 | None:intergenic | 25.0% |
| !!! | TACATAAATTGCCTTTTTCA+GGG | - | chr6_1:83523215-83523234 | Msa0895500:three_prime_UTR | 25.0% |
| ! | ATACCCTTATAGTTACTTAT+TGG | - | chr6_1:83523305-83523324 | Msa0895500:intron | 25.0% |
| ! | CAAACCAATAAGTAACTATA+AGG | + | chr6_1:83523312-83523331 | None:intergenic | 25.0% |
| ! | AAAAGACATGTATAAAGGAA+TGG | - | chr6_1:83523346-83523365 | Msa0895500:three_prime_UTR | 25.0% |
| !! | AAGATAGCAATGAAGTATTA+TGG | + | chr6_1:83523485-83523504 | None:intergenic | 25.0% |
| ! | TAAAAAACTGCATGTTTAGT+TGG | - | chr6_1:83523575-83523594 | Msa0895500:intron | 25.0% |
| ! | TGGTTATTGAATTGTTTAGT+TGG | - | chr6_1:83523595-83523614 | Msa0895500:intron | 25.0% |
| !!! | TTGACCCAAAATACTTTTTT+AGG | - | chr6_1:83523619-83523638 | Msa0895500:three_prime_UTR | 25.0% |
| !!! | TGACCCAAAATACTTTTTTA+GGG | - | chr6_1:83523620-83523639 | Msa0895500:three_prime_UTR | 25.0% |
| ! | ACTAGAGGTAAATCATAAAA+TGG | + | chr6_1:83523712-83523731 | None:intergenic | 25.0% |
| ! | AGTTGCATATTATCTTACTT+TGG | - | chr6_1:83523865-83523884 | Msa0895500:three_prime_UTR | 25.0% |
| ! | GTTGCATATTATCTTACTTT+GGG | - | chr6_1:83523866-83523885 | Msa0895500:three_prime_UTR | 25.0% |
| ! | TTGCATATTATCTTACTTTG+GGG | - | chr6_1:83523867-83523886 | Msa0895500:three_prime_UTR | 25.0% |
| ! | TTCTCATAACATTTCTCTAA+GGG | + | chr6_1:83524103-83524122 | None:intergenic | 25.0% |
| !!! | CGTCATTTTTCTGATTTTTT+GGG | + | chr6_1:83524127-83524146 | None:intergenic | 25.0% |
| ! | AACATAAAAAAGGGGAAAAA+GGG | + | chr6_1:83524188-83524207 | None:intergenic | 25.0% |
| ! | AAACATAAAAAAGGGGAAAA+AGG | + | chr6_1:83524189-83524208 | None:intergenic | 25.0% |
| ! | ATGTTTATTGTTGTGTTTGA+AGG | - | chr6_1:83522463-83522482 | Msa0895500:intron | 25.0% |
| ! | TTTGATATTTGTAGCCATAA+AGG | - | chr6_1:83524549-83524568 | Msa0895500:intron | 25.0% |
| ! | TTGATATTTGTAGCCATAAA+GGG | - | chr6_1:83524550-83524569 | Msa0895500:intron | 25.0% |
| ! | TTAAACACAAAATCCCTTTA+TGG | + | chr6_1:83524566-83524585 | None:intergenic | 25.0% |
| ! | TATCTTGTTACACCAAAAAT+TGG | + | chr6_1:83525032-83525051 | None:intergenic | 25.0% |
| ! | TATAATAGCACAAGTATCAT+AGG | - | chr6_1:83525230-83525249 | Msa0895500:intron | 25.0% |
| ! | AGTAATTATGTTCGAAAAAC+AGG | + | chr6_1:83525477-83525496 | None:intergenic | 25.0% |
| !!! | ATGAAAAATTTGTTGACATC+AGG | - | chr6_1:83525534-83525553 | Msa0895500:intron | 25.0% |
| ! | AACAATCAACATAACATACA+GGG | + | chr6_1:83525843-83525862 | None:intergenic | 25.0% |
| ! | TAACAATCAACATAACATAC+AGG | + | chr6_1:83525844-83525863 | None:intergenic | 25.0% |
| ! | TCAACAATTGGTTATTTGAT+TGG | + | chr6_1:83526114-83526133 | None:intergenic | 25.0% |
| ! | TCCTACAGATTACAATAATA+AGG | + | chr6_1:83526161-83526180 | None:intergenic | 25.0% |
| ! | AAAACATACACTAACATCAT+GGG | + | chr6_1:83526258-83526277 | None:intergenic | 25.0% |
| ! | AAAAACATACACTAACATCA+TGG | + | chr6_1:83526259-83526278 | None:intergenic | 25.0% |
| ACAAAACGAACGAGAAATTT+GGG | + | chr6_1:83522051-83522070 | None:intergenic | 30.0% | |
| TGGGGATAATTTATGTGATT+AGG | - | chr6_1:83522511-83522530 | Msa0895500:three_prime_UTR | 30.0% | |
| TCTACTTCAAACACACATAT+TGG | + | chr6_1:83522614-83522633 | None:intergenic | 30.0% | |
| TTCGATGACTAAATCAAAAC+TGG | - | chr6_1:83523088-83523107 | Msa0895500:intron | 30.0% | |
| ATGACTAAATCAAAACTGGA+AGG | - | chr6_1:83523092-83523111 | Msa0895500:intron | 30.0% | |
| TGACTAAATCAAAACTGGAA+GGG | - | chr6_1:83523093-83523112 | Msa0895500:intron | 30.0% | |
| CTGAAAAAGGCAATTTATGT+AGG | + | chr6_1:83523216-83523235 | None:intergenic | 30.0% | |
| ! | CTACATAAATTGCCTTTTTC+AGG | - | chr6_1:83523214-83523233 | Msa0895500:three_prime_UTR | 30.0% |
| !!! | ACATAAATTGCCTTTTTCAG+GGG | - | chr6_1:83523216-83523235 | Msa0895500:three_prime_UTR | 30.0% |
| !!! | CCACCCTAAAAAAGTATTTT+GGG | + | chr6_1:83523626-83523645 | None:intergenic | 30.0% |
| !!! | TCCACCCTAAAAAAGTATTT+TGG | + | chr6_1:83523627-83523646 | None:intergenic | 30.0% |
| GATCAAATAATACAGACTAG+AGG | + | chr6_1:83523727-83523746 | None:intergenic | 30.0% | |
| ! | ATAAGGCCAATCTATTCTTT+TGG | - | chr6_1:83523793-83523812 | Msa0895500:three_prime_UTR | 30.0% |
| ! | TAAGGCCAATCTATTCTTTT+GGG | - | chr6_1:83523794-83523813 | Msa0895500:three_prime_UTR | 30.0% |
| TGCATATTATCTTACTTTGG+GGG | - | chr6_1:83523868-83523887 | Msa0895500:three_prime_UTR | 30.0% | |
| !! | GATTTAATTTGATTGCATCC+AGG | - | chr6_1:83523984-83524003 | Msa0895500:three_prime_UTR | 30.0% |
| !!! | TAATGCTGTTTTCTTTTGTG+TGG | + | chr6_1:83524031-83524050 | None:intergenic | 30.0% |
| TTTCAGCCGTTAAAAAGTTT+GGG | - | chr6_1:83524072-83524091 | Msa0895500:three_prime_UTR | 30.0% | |
| CTTCTCATAACATTTCTCTA+AGG | + | chr6_1:83524104-83524123 | None:intergenic | 30.0% | |
| !!! | GCGTCATTTTTCTGATTTTT+TGG | + | chr6_1:83524128-83524147 | None:intergenic | 30.0% |
| ACATAAAAAAGGGGAAAAAG+GGG | + | chr6_1:83524187-83524206 | None:intergenic | 30.0% | |
| TGGGGATAATTTATGTGATT+AGG | - | chr6_1:83522511-83522530 | Msa0895500:three_prime_UTR | 30.0% | |
| ! | ATGTGATTAGGTTTTTGCTT+TGG | - | chr6_1:83522523-83522542 | Msa0895500:three_prime_UTR | 30.0% |
| ! | GTTTGAAGTAGAATTGAAGA+TGG | - | chr6_1:83524362-83524381 | Msa0895500:intron | 30.0% |
| CAAATATCAAATCCCAAAGA+AGG | + | chr6_1:83524540-83524559 | None:intergenic | 30.0% | |
| ATTGTTACTGTTGTGTTATG+TGG | - | chr6_1:83524622-83524641 | Msa0895500:intron | 30.0% | |
| ATAGGGATAAAATGTGGTAT+AGG | - | chr6_1:83524698-83524717 | Msa0895500:intron | 30.0% | |
| TAGGGATAAAATGTGGTATA+GGG | - | chr6_1:83524699-83524718 | Msa0895500:intron | 30.0% | |
| !! | AAACAAGTTTCAAGTTTCCT+AGG | + | chr6_1:83524881-83524900 | None:intergenic | 30.0% |
| ! | GAAACTTGTTTACTCAATGA+AGG | - | chr6_1:83524890-83524909 | Msa0895500:intron | 30.0% |
| TTGTTTACTCAATGAAGGAA+GGG | - | chr6_1:83524895-83524914 | Msa0895500:intron | 30.0% | |
| AGCTTACTCAATATATCAAC+AGG | - | chr6_1:83524919-83524938 | Msa0895500:intron | 30.0% | |
| !!! | GCATATATTTTTTGCCCTAA+TGG | - | chr6_1:83524941-83524960 | Msa0895500:intron | 30.0% |
| ! | TGTGCTCAATTACCAATTTT+TGG | - | chr6_1:83525017-83525036 | Msa0895500:intron | 30.0% |
| !! | ATATCCATGAATTGATTTGC+TGG | + | chr6_1:83525130-83525149 | None:intergenic | 30.0% |
| AATCAATTCATGGATATACC+AGG | - | chr6_1:83525133-83525152 | Msa0895500:intron | 30.0% | |
| GTAGTATTCATCGATAGTTT+AGG | - | chr6_1:83525159-83525178 | Msa0895500:intron | 30.0% | |
| TAGATTCTTTCAAACATCCA+TGG | - | chr6_1:83525190-83525209 | Msa0895500:intron | 30.0% | |
| AAAACTTGGAATCTGTTAAG+AGG | - | chr6_1:83525290-83525309 | Msa0895500:intron | 30.0% | |
| !! | AAAATTTGTTGACATCAGGT+TGG | - | chr6_1:83525538-83525557 | Msa0895500:intron | 30.0% |
| !! | ACCTTCTATACTGATTCTAA+TGG | - | chr6_1:83525634-83525653 | Msa0895500:intron | 30.0% |
| TCCATTAGAATCAGTATAGA+AGG | + | chr6_1:83525638-83525657 | None:intergenic | 30.0% | |
| GTATGATATTGTGATACACA+TGG | + | chr6_1:83525869-83525888 | None:intergenic | 30.0% | |
| TATCTCTTAGGTAAATTCCA+AGG | + | chr6_1:83525962-83525981 | None:intergenic | 30.0% | |
| !! | ACTCTTTGCTTTTATCTCTT+AGG | + | chr6_1:83525974-83525993 | None:intergenic | 30.0% |
| ! | AAGCAAAGAGTTTTCTGTAT+TGG | - | chr6_1:83525983-83526002 | Msa0895500:intron | 30.0% |
| !! | AGTTTTCTGTATTGGTAGAT+AGG | - | chr6_1:83525991-83526010 | Msa0895500:intron | 30.0% |
| TCAGGAAAATTCTCAACAAT+TGG | + | chr6_1:83526126-83526145 | None:intergenic | 30.0% | |
| ATAAGGCTCAACATAAAATC+AGG | + | chr6_1:83526144-83526163 | None:intergenic | 30.0% | |
| ! | GCCTTATTATTGTAATCTGT+AGG | - | chr6_1:83526157-83526176 | Msa0895500:CDS | 30.0% |
| TATTGTAATCTGTAGGATCT+TGG | - | chr6_1:83526164-83526183 | Msa0895500:CDS | 30.0% | |
| TAAATCAGTGTTATCTCACA+AGG | + | chr6_1:83526210-83526229 | None:intergenic | 30.0% | |
| AAACATACACTAACATCATG+GGG | + | chr6_1:83526257-83526276 | None:intergenic | 30.0% | |
| GAACTGATGTTGGAAATTTA+TGG | - | chr6_1:83526284-83526303 | Msa0895500:five_prime_UTR | 30.0% | |
| TGATGTTGGAAATTTATGGA+AGG | - | chr6_1:83526288-83526307 | Msa0895500:five_prime_UTR | 30.0% | |
| CACAAAACGAACGAGAAATT+TGG | + | chr6_1:83522052-83522071 | None:intergenic | 35.0% | |
| TGAAGGGAAGAAAGAATTCA+GGG | + | chr6_1:83522294-83522313 | None:intergenic | 35.0% | |
| !! | TTAGGTTTTTGCTTTGAACG+CGG | - | chr6_1:83522529-83522548 | Msa0895500:three_prime_UTR | 35.0% |
| GGATTTGATTCCAATCTTCT+CGG | - | chr6_1:83522556-83522575 | Msa0895500:intron | 35.0% | |
| ! | TCCTTTTGGACTTGTGAATA+AGG | - | chr6_1:83522673-83522692 | Msa0895500:three_prime_UTR | 35.0% |
| TCCTTATTCACAAGTCCAAA+AGG | + | chr6_1:83522677-83522696 | None:intergenic | 35.0% | |
| GCGCAAAAATTAACATGCTT+TGG | + | chr6_1:83522709-83522728 | None:intergenic | 35.0% | |
| ! | AGATATGTCTTTTTCCGTTG+TGG | - | chr6_1:83522790-83522809 | Msa0895500:intron | 35.0% |
| TTTCTTATATCTCCACAGTC+GGG | + | chr6_1:83522920-83522939 | None:intergenic | 35.0% | |
| GTTTCTTATATCTCCACAGT+CGG | + | chr6_1:83522921-83522940 | None:intergenic | 35.0% | |
| !!! | CCAGAGTTTTAAAAAGGTCA+GGG | + | chr6_1:83522970-83522989 | None:intergenic | 35.0% |
| !!! | ACCAGAGTTTTAAAAAGGTC+AGG | + | chr6_1:83522971-83522990 | None:intergenic | 35.0% |
| AGACATGTATAAAGGAATGG+AGG | - | chr6_1:83523349-83523368 | Msa0895500:three_prime_UTR | 35.0% | |
| GACATGTATAAAGGAATGGA+GGG | - | chr6_1:83523350-83523369 | Msa0895500:three_prime_UTR | 35.0% | |
| !!! | CCCAAAATACTTTTTTAGGG+TGG | - | chr6_1:83523623-83523642 | Msa0895500:three_prime_UTR | 35.0% |
| ATTGTGTGTATGCTATTCGT+TGG | - | chr6_1:83523910-83523929 | Msa0895500:three_prime_UTR | 35.0% | |
| TTGTGTGTATGCTATTCGTT+GGG | - | chr6_1:83523911-83523930 | Msa0895500:three_prime_UTR | 35.0% | |
| GTTTCAGCCGTTAAAAAGTT+TGG | - | chr6_1:83524071-83524090 | Msa0895500:three_prime_UTR | 35.0% | |
| ! | TGATTAGGTTTTTGCTTTGG+AGG | - | chr6_1:83524266-83524285 | Msa0895500:CDS | 35.0% |
| GGATTTGATTCCAATCTTCT+CGG | - | chr6_1:83522556-83522575 | Msa0895500:intron | 35.0% | |
| ATATAAACCTCCGAGAAGAT+TGG | + | chr6_1:83524309-83524328 | None:intergenic | 35.0% | |
| ! | GTTGCTATGTTGATTATCTC+TGG | - | chr6_1:83524482-83524501 | Msa0895500:intron | 35.0% |
| AAATGTGGTATAGGGATACT+TGG | - | chr6_1:83524707-83524726 | Msa0895500:intron | 35.0% | |
| ! | CAGAGTGATACATTTGAAGT+AGG | - | chr6_1:83524855-83524874 | Msa0895500:intron | 35.0% |
| CTTGTTTACTCAATGAAGGA+AGG | - | chr6_1:83524894-83524913 | Msa0895500:intron | 35.0% | |
| TGGGAATTGATGAACCATTA+GGG | + | chr6_1:83524958-83524977 | None:intergenic | 35.0% | |
| ATGGGAATTGATGAACCATT+AGG | + | chr6_1:83524959-83524978 | None:intergenic | 35.0% | |
| AATTCATGGATATACCAGGT+AGG | - | chr6_1:83525137-83525156 | Msa0895500:intron | 35.0% | |
| CTATATGGAGCTTTCAACAA+GGG | + | chr6_1:83525342-83525361 | None:intergenic | 35.0% | |
| ! | TTCTTTTCCTTTGAACAGTC+TGG | + | chr6_1:83525405-83525424 | None:intergenic | 35.0% |
| ATGGATGTGATTTCATCGAA+CGG | - | chr6_1:83525653-83525672 | Msa0895500:intron | 35.0% | |
| ! | ATGATGATGCATACTTGTAC+AGG | - | chr6_1:83525758-83525777 | Msa0895500:intron | 35.0% |
| TTCGAGACTATAGAAAAGAC+TGG | - | chr6_1:83525781-83525800 | Msa0895500:intron | 35.0% | |
| CTATAGAAAAGACTGGAACT+TGG | - | chr6_1:83525788-83525807 | Msa0895500:intron | 35.0% | |
| ! | TTCTTGTTTCAGATCAACCT+TGG | - | chr6_1:83525942-83525961 | Msa0895500:intron | 35.0% |
| AATTGGAGCTAATGGTTCAT+AGG | - | chr6_1:83526045-83526064 | Msa0895500:CDS | 35.0% | |
| ! | TGAGAGCTTGTTTGTTCGTT+CGG | + | chr6_1:83522079-83522098 | None:intergenic | 40.0% |
| CATCTTCTTCTTCGTCTTCT+TGG | + | chr6_1:83522122-83522141 | None:intergenic | 40.0% | |
| AGACGAAGAAGAAGATGTTG+AGG | - | chr6_1:83522125-83522144 | Msa0895500:three_prime_UTR | 40.0% | |
| GACGAAGAAGAAGATGTTGA+GGG | - | chr6_1:83522126-83522145 | Msa0895500:three_prime_UTR | 40.0% | |
| AATTCAGGGTGGATGGAAAA+GGG | + | chr6_1:83522280-83522299 | None:intergenic | 40.0% | |
| AAGAAAGAATTCAGGGTGGA+TGG | + | chr6_1:83522287-83522306 | None:intergenic | 40.0% | |
| CTGAAGGGAAGAAAGAATTC+AGG | + | chr6_1:83522295-83522314 | None:intergenic | 40.0% | |
| GAATTCTTTCTTCCCTTCAG+AGG | - | chr6_1:83522295-83522314 | Msa0895500:three_prime_UTR | 40.0% | |
| !! | TTTTTGCTTTGAACGCGGTT+TGG | - | chr6_1:83522534-83522553 | Msa0895500:three_prime_UTR | 40.0% |
| !! | TTTTGCTTTGAACGCGGTTT+GGG | - | chr6_1:83522535-83522554 | Msa0895500:three_prime_UTR | 40.0% |
| TTTGATTCCAATCTTCTCGG+AGG | - | chr6_1:83522559-83522578 | Msa0895500:intron | 40.0% | |
| !!! | TTACGGAAGGTTTTGAATCG+TGG | - | chr6_1:83522865-83522884 | Msa0895500:intron | 40.0% |
| ATTGTATAGAATCCCGACTG+TGG | - | chr6_1:83522905-83522924 | Msa0895500:three_prime_UTR | 40.0% | |
| !!! | CCCTGACCTTTTTAAAACTC+TGG | - | chr6_1:83522967-83522986 | Msa0895500:intron | 40.0% |
| GGAACAATTTCCCCTGAAAA+AGG | + | chr6_1:83523229-83523248 | None:intergenic | 40.0% | |
| GAAGGCCCAAAAGAATAGAT+TGG | + | chr6_1:83523802-83523821 | None:intergenic | 40.0% | |
| TTTAACGGCTGAAACAGTTG+CGG | + | chr6_1:83524066-83524085 | None:intergenic | 40.0% | |
| ! | GCCAAGCCCAAACTTTTTAA+CGG | + | chr6_1:83524081-83524100 | None:intergenic | 40.0% |
| !!! | TTAGGTTTTTGCTTTGGAGG+CGG | - | chr6_1:83524269-83524288 | Msa0895500:CDS | 40.0% |
| TTTGATTCCAATCTTCTCGG+AGG | - | chr6_1:83522559-83522578 | Msa0895500:intron | 40.0% | |
| CTATATTGTTGTCGCTGCTT+TGG | - | chr6_1:83524415-83524434 | Msa0895500:intron | 40.0% | |
| ACTGTTGTGTTATGTGGTAC+TGG | - | chr6_1:83524628-83524647 | Msa0895500:intron | 40.0% | |
| CTGTTGTGTTATGTGGTACT+GGG | - | chr6_1:83524629-83524648 | Msa0895500:intron | 40.0% | |
| ! | GATACATTTGAAGTAGGCCT+AGG | - | chr6_1:83524861-83524880 | Msa0895500:intron | 40.0% |
| ! | ACCTTCTCGTTGAAGTTGAT+GGG | + | chr6_1:83524977-83524996 | None:intergenic | 40.0% |
| TACCTTCTCGTTGAAGTTGA+TGG | + | chr6_1:83524978-83524997 | None:intergenic | 40.0% | |
| TCCACCAGCAAATCAATTCA+TGG | - | chr6_1:83525123-83525142 | Msa0895500:intron | 40.0% | |
| !! | TCCATGAATTGATTTGCTGG+TGG | + | chr6_1:83525127-83525146 | None:intergenic | 40.0% |
| ATCGATGAATACTACCTACC+TGG | + | chr6_1:83525154-83525173 | None:intergenic | 40.0% | |
| GCTATATGGAGCTTTCAACA+AGG | + | chr6_1:83525343-83525362 | None:intergenic | 40.0% | |
| TGGATGTGATTTCATCGAAC+GGG | - | chr6_1:83525654-83525673 | Msa0895500:intron | 40.0% | |
| GAAGTGAATCAACCTGTTAC+TGG | - | chr6_1:83525810-83525829 | Msa0895500:intron | 40.0% | |
| CAGGGTAATATTCCAGTAAC+AGG | + | chr6_1:83525825-83525844 | None:intergenic | 40.0% | |
| ! | TGTATTGGTAGATAGGTCTG+TGG | - | chr6_1:83525998-83526017 | Msa0895500:intron | 40.0% |
| ! | GTATTGGTAGATAGGTCTGT+GGG | - | chr6_1:83525999-83526018 | Msa0895500:intron | 40.0% |
| CAATTGTCCATCTACGATAC+TGG | + | chr6_1:83526030-83526049 | None:intergenic | 40.0% | |
| CAGTATCGTAGATGGACAAT+TGG | - | chr6_1:83526028-83526047 | Msa0895500:CDS | 40.0% | |
| AGATGGACAATTGGAGCTAA+TGG | - | chr6_1:83526037-83526056 | Msa0895500:CDS | 40.0% | |
| TTCTTCTTCGTCTTCTTGGC+TGG | + | chr6_1:83522118-83522137 | None:intergenic | 45.0% | |
| GTTCTTAGAGAGGAAAGAGG+AGG | + | chr6_1:83522212-83522231 | None:intergenic | 45.0% | |
| GAGGTTCTTAGAGAGGAAAG+AGG | + | chr6_1:83522215-83522234 | None:intergenic | 45.0% | |
| ATTCAGGGTGGATGGAAAAG+GGG | + | chr6_1:83522279-83522298 | None:intergenic | 45.0% | |
| GAATTCAGGGTGGATGGAAA+AGG | + | chr6_1:83522281-83522300 | None:intergenic | 45.0% | |
| AGGGAAGAAAGAATTCAGGG+TGG | + | chr6_1:83522291-83522310 | None:intergenic | 45.0% | |
| GAACAGCAGTTACCTCTGAA+GGG | + | chr6_1:83522310-83522329 | None:intergenic | 45.0% | |
| AGAACAGCAGTTACCTCTGA+AGG | + | chr6_1:83522311-83522330 | None:intergenic | 45.0% | |
| ATATGAGCCTCCGAGAAGAT+TGG | + | chr6_1:83522569-83522588 | None:intergenic | 45.0% | |
| CTGCAGTTCTACAACCACAA+CGG | + | chr6_1:83522807-83522826 | None:intergenic | 45.0% | |
| ! | AAGGTCAGGGAGCATGATTT+GGG | + | chr6_1:83522957-83522976 | None:intergenic | 45.0% |
| ! | AAAGGTCAGGGAGCATGATT+TGG | + | chr6_1:83522958-83522977 | None:intergenic | 45.0% |
| AGTGACTCAGTAGCAAAACC+TGG | + | chr6_1:83524005-83524024 | None:intergenic | 45.0% | |
| GAAACAGTTGCGGGAATTTC+AGG | + | chr6_1:83524056-83524075 | None:intergenic | 45.0% | |
| TTAACGGCTGAAACAGTTGC+GGG | + | chr6_1:83524065-83524084 | None:intergenic | 45.0% | |
| GCCGTTAAAAAGTTTGGGCT+TGG | - | chr6_1:83524077-83524096 | Msa0895500:three_prime_UTR | 45.0% | |
| !!! | TTTTTGCTTTGGAGGCGGTT+TGG | - | chr6_1:83524274-83524293 | Msa0895500:CDS | 45.0% |
| !!! | TTTTGCTTTGGAGGCGGTTT+GGG | - | chr6_1:83524275-83524294 | Msa0895500:CDS | 45.0% |
| TTGGTCTGCAAGGTTATCTC+AGG | - | chr6_1:83524434-83524453 | Msa0895500:intron | 45.0% | |
| ATCACTGATCAGAGCTAACC+TGG | + | chr6_1:83524740-83524759 | None:intergenic | 45.0% | |
| !! | TTGCAGCTGCTATTTCCGAT+AGG | - | chr6_1:83524808-83524827 | Msa0895500:intron | 45.0% |
| !! | TGCAGCTGCTATTTCCGATA+GGG | - | chr6_1:83524809-83524828 | Msa0895500:intron | 45.0% |
| CCTGTGTGCTATATCCCTAT+CGG | + | chr6_1:83524826-83524845 | None:intergenic | 45.0% | |
| TCCCATCAACTTCAACGAGA+AGG | - | chr6_1:83524973-83524992 | Msa0895500:intron | 45.0% | |
| ! | TCTGTTAAGAGGCATGCAGT+AGG | - | chr6_1:83525301-83525320 | Msa0895500:intron | 45.0% |
| CAGACTACCAGACTGTTCAA+AGG | - | chr6_1:83525395-83525414 | Msa0895500:intron | 45.0% | |
| ACTCCATCGTCAATCGGTAT+AGG | + | chr6_1:83525565-83525584 | None:intergenic | 45.0% | |
| ! | TATACCGATTGACGATGGAG+TGG | - | chr6_1:83525564-83525583 | Msa0895500:intron | 45.0% |
| ! | ATACCGATTGACGATGGAGT+GGG | - | chr6_1:83525565-83525584 | Msa0895500:intron | 45.0% |
| CTTAGAGAGGAAAGAGGAGG+CGG | + | chr6_1:83522209-83522228 | None:intergenic | 50.0% | |
| GTGGGATGAGGTTCTTAGAG+AGG | + | chr6_1:83522222-83522241 | None:intergenic | 50.0% | |
| CGGAGGCTCATATGTTAGTG+TGG | - | chr6_1:83522576-83522595 | Msa0895500:intron | 50.0% | |
| CGTTGTGGTTGTAGAACTGC+AGG | - | chr6_1:83522805-83522824 | Msa0895500:intron | 50.0% | |
| AATGACGCAGCAGTCAAGCA+TGG | - | chr6_1:83524140-83524159 | Msa0895500:three_prime_UTR | 50.0% | |
| ! | GGGATACTTGGTGAACAACC+AGG | - | chr6_1:83524719-83524738 | Msa0895500:intron | 50.0% |
| CCGATAGGGATATAGCACAC+AGG | - | chr6_1:83524823-83524842 | Msa0895500:intron | 50.0% | |
| AGGGATATAGCACACAGGTC+AGG | - | chr6_1:83524828-83524847 | Msa0895500:intron | 50.0% | |
| GGGATATAGCACACAGGTCA+GGG | - | chr6_1:83524829-83524848 | Msa0895500:intron | 50.0% | |
| ! | TCTCCTCTCACAGTTTTGCG+AGG | - | chr6_1:83525083-83525102 | Msa0895500:intron | 50.0% |
| !! | TGGTGGACTTCATGCACGAT+TGG | + | chr6_1:83525110-83525129 | None:intergenic | 50.0% |
| ! | GGACCTATACCGATTGACGA+TGG | - | chr6_1:83525559-83525578 | Msa0895500:intron | 50.0% |
| TTGCCCACTCCATCGTCAAT+CGG | + | chr6_1:83525571-83525590 | None:intergenic | 50.0% | |
| TTGGTAGATAGGTCTGTGGG+TGG | - | chr6_1:83526002-83526021 | Msa0895500:intron | 50.0% | |
| GGTGGTTCCAGTATCGTAGA+TGG | - | chr6_1:83526020-83526039 | Msa0895500:intron | 50.0% | |
| AGACCTCCATGAGGGAGATG+CGG | + | chr6_1:83522179-83522198 | None:intergenic | 55.0% | |
| GCGTGGTAAGACCTCCATGA+GGG | + | chr6_1:83522187-83522206 | None:intergenic | 55.0% | |
| TGATCGGAGGTGGAAGAAGG+CGG | + | chr6_1:83522244-83522263 | None:intergenic | 55.0% | |
| CGTTGATCGGAGGTGGAAGA+AGG | + | chr6_1:83522247-83522266 | None:intergenic | 55.0% | |
| ! | AGATCTGCGTTGATCGGAGG+TGG | + | chr6_1:83522254-83522273 | None:intergenic | 55.0% |
| ! | GTCAGATCTGCGTTGATCGG+AGG | + | chr6_1:83522257-83522276 | None:intergenic | 55.0% |
| ! | GGGGTCAGATCTGCGTTGAT+CGG | + | chr6_1:83522260-83522279 | None:intergenic | 55.0% |
| ACGCAGCAGTCAAGCATGGA+GGG | - | chr6_1:83524144-83524163 | Msa0895500:three_prime_UTR | 55.0% | |
| ! | TGTCGCTGCTTTGGTCTGCA+AGG | - | chr6_1:83524424-83524443 | Msa0895500:intron | 55.0% |
| GGTCCTCGCAAAACTGTGAG+AGG | + | chr6_1:83525089-83525108 | None:intergenic | 55.0% | |
| CTCTCTCCGCATCTCCCTCA+TGG | - | chr6_1:83522170-83522189 | Msa0895500:three_prime_UTR | 60.0% | |
| TCTCCGCATCTCCCTCATGG+AGG | - | chr6_1:83522173-83522192 | Msa0895500:three_prime_UTR | 60.0% | |
| GGCGTGGTAAGACCTCCATG+AGG | + | chr6_1:83522188-83522207 | None:intergenic | 60.0% | |
| TGGAAGAAGGCGGTGGGATG+AGG | + | chr6_1:83522234-83522253 | None:intergenic | 60.0% | |
| GACGCAGCAGTCAAGCATGG+AGG | - | chr6_1:83524143-83524162 | Msa0895500:three_prime_UTR | 60.0% | |
| AGAGGAAAGAGGAGGCGGCG+TGG | + | chr6_1:83522204-83522223 | None:intergenic | 65.0% | |
| CGGAGGTGGAAGAAGGCGGT+GGG | + | chr6_1:83522240-83522259 | None:intergenic | 65.0% | |
| TCGGAGGTGGAAGAAGGCGG+TGG | + | chr6_1:83522241-83522260 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 83522024 | 83526313 | 83522024 | ID=Msa0895500;Name=Msa0895500 |
| chr6_1 | mRNA | 83522024 | 83526313 | 83522024 | ID=Msa0895500-mRNA-1;Parent=Msa0895500;Name=Msa0895500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|0.85|0.75|8|1463|92 |
| chr6_1 | exon | 83522024 | 83522383 | 83522024 | ID=Msa0895500-mRNA-1:exon:14081;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83522494 | 83522557 | 83522494 | ID=Msa0895500-mRNA-1:exon:14080;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83522662 | 83522781 | 83522662 | ID=Msa0895500-mRNA-1:exon:14079;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83522892 | 83522939 | 83522892 | ID=Msa0895500-mRNA-1:exon:14078;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83523183 | 83523254 | 83523183 | ID=Msa0895500-mRNA-1:exon:14077;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83523343 | 83523507 | 83523343 | ID=Msa0895500-mRNA-1:exon:14076;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83523597 | 83524331 | 83523597 | ID=Msa0895500-mRNA-1:exon:14075;Parent=Msa0895500-mRNA-1 |
| chr6_1 | exon | 83526021 | 83526313 | 83526021 | ID=Msa0895500-mRNA-1:exon:14074;Parent=Msa0895500-mRNA-1 |
| chr6_1 | five_prime_UTR | 83526199 | 83526313 | 83526199 | ID=Msa0895500-mRNA-1:five_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | CDS | 83526021 | 83526198 | 83526021 | ID=Msa0895500-mRNA-1:cds;Parent=Msa0895500-mRNA-1 |
| chr6_1 | CDS | 83524231 | 83524331 | 83524231 | ID=Msa0895500-mRNA-1:cds;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83523597 | 83524230 | 83523597 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83523343 | 83523507 | 83523343 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83523183 | 83523254 | 83523183 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83522892 | 83522939 | 83522892 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83522662 | 83522781 | 83522662 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83522494 | 83522557 | 83522494 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| chr6_1 | three_prime_UTR | 83522024 | 83522383 | 83522024 | ID=Msa0895500-mRNA-1:three_prime_utr;Parent=Msa0895500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
