Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373430 | XP_003592792.2 | 95.683 | 417 | 6 | 2 | 1 | 415 | 1 | 407 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373430 | sp|O64886|COX10_ARATH | 67.222 | 360 | 104 | 4 | 55 | 412 | 81 | 428 | 4.67e-172 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373430 | A0A396K4D2 | 95.683 | 417 | 6 | 2 | 1 | 415 | 1 | 407 | 0.0 | 807 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046010 | Msa1373430 | 0.897898 | 8.988704e-77 | -8.615850e-47 |
| Msa0055740 | Msa1373430 | -0.808046 | 3.753733e-50 | -8.615850e-47 |
| Msa0075470 | Msa1373430 | -0.800727 | 1.258647e-48 | -8.615850e-47 |
| Msa0090320 | Msa1373430 | -0.803564 | 3.282036e-49 | -8.615850e-47 |
| Msa0091210 | Msa1373430 | 0.813420 | 2.582643e-51 | -8.615850e-47 |
| Msa1372760 | Msa1373430 | -0.809497 | 1.837727e-50 | -8.615850e-47 |
| Msa1373030 | Msa1373430 | -0.802122 | 6.515892e-49 | -8.615850e-47 |
| Msa1373430 | Msa1394540 | -0.803457 | 3.455001e-49 | -8.615850e-47 |
| Msa1373430 | Msa1413840 | -0.825526 | 4.467432e-54 | -8.615850e-47 |
| Msa1373430 | Msa1449340 | 0.807215 | 5.636026e-50 | -8.615850e-47 |
| Msa1373430 | Msa1451620 | 0.815511 | 8.905287e-52 | -8.615850e-47 |
| Msa1373430 | Msa1466540 | -0.812985 | 3.217771e-51 | -8.615850e-47 |
| Msa0638930 | Msa1373430 | 0.808690 | 2.736514e-50 | -8.615850e-47 |
| Msa0657610 | Msa1373430 | -0.818332 | 2.071403e-52 | -8.615850e-47 |
| Msa0670000 | Msa1373430 | -0.851367 | 9.291782e-61 | -8.615850e-47 |
| Msa0704920 | Msa1373430 | -0.805448 | 1.328511e-49 | -8.615850e-47 |
| Msa0731940 | Msa1373430 | -0.802020 | 6.837979e-49 | -8.615850e-47 |
| Msa0744170 | Msa1373430 | 0.831851 | 1.320341e-55 | -8.615850e-47 |
| Msa0755050 | Msa1373430 | -0.827369 | 1.625410e-54 | -8.615850e-47 |
| Msa0766630 | Msa1373430 | -0.811927 | 5.479076e-51 | -8.615850e-47 |
| Msa0777930 | Msa1373430 | -0.802488 | 5.477667e-49 | -8.615850e-47 |
| Msa0788070 | Msa1373430 | 0.832510 | 9.073111e-56 | -8.615850e-47 |
| Msa0137640 | Msa1373430 | -0.806664 | 7.370893e-50 | -8.615850e-47 |
| Msa0182740 | Msa1373430 | -0.803248 | 3.817139e-49 | -8.615850e-47 |
| Msa0199800 | Msa1373430 | 0.806081 | 9.779055e-50 | -8.615850e-47 |
| Msa0223410 | Msa1373430 | 0.831796 | 1.362578e-55 | -8.615850e-47 |
| Msa1234120 | Msa1373430 | -0.820897 | 5.381227e-53 | -8.615850e-47 |
| Msa1239720 | Msa1373430 | -0.808784 | 2.612210e-50 | -8.615850e-47 |
| Msa1282580 | Msa1373430 | 0.839373 | 1.647686e-57 | -8.615850e-47 |
| Msa1307070 | Msa1373430 | -0.818950 | 1.499985e-52 | -8.615850e-47 |
| Msa1316200 | Msa1373430 | -0.829577 | 4.761359e-55 | -8.615850e-47 |
| Msa1325860 | Msa1373430 | 0.804647 | 1.953973e-49 | -8.615850e-47 |
| Msa1331000 | Msa1373430 | -0.801550 | 8.540880e-49 | -8.615850e-47 |
| Msa0375630 | Msa1373430 | -0.821386 | 4.151792e-53 | -8.615850e-47 |
| Msa0381180 | Msa1373430 | -0.809648 | 1.705368e-50 | -8.615850e-47 |
| Msa0381600 | Msa1373430 | 0.804619 | 1.980162e-49 | -8.615850e-47 |
| Msa0381610 | Msa1373430 | 0.806205 | 9.211152e-50 | -8.615850e-47 |
| Msa0392040 | Msa1373430 | 0.809102 | 2.234029e-50 | -8.615850e-47 |
| Msa0433410 | Msa1373430 | 0.823492 | 1.345302e-53 | -8.615850e-47 |
| Msa0434180 | Msa1373430 | -0.814556 | 1.450801e-51 | -8.615850e-47 |
| Msa0437830 | Msa1373430 | 0.890701 | 7.768317e-74 | -8.615850e-47 |
| Msa0453350 | Msa1373430 | -0.801452 | 8.946154e-49 | -8.615850e-47 |
| Msa0469940 | Msa1373430 | 0.828936 | 6.815217e-55 | -8.615850e-47 |
| Msa0477130 | Msa1373430 | 0.848509 | 5.858925e-60 | -8.615850e-47 |
| Msa0999120 | Msa1373430 | -0.820879 | 5.432094e-53 | -8.615850e-47 |
| Msa1003620 | Msa1373430 | -0.815120 | 1.088099e-51 | -8.615850e-47 |
| Msa1014540 | Msa1373430 | -0.807416 | 5.110097e-50 | -8.615850e-47 |
| Msa1014730 | Msa1373430 | -0.828720 | 7.684145e-55 | -8.615850e-47 |
| Msa1023950 | Msa1373430 | -0.809563 | 1.778634e-50 | -8.615850e-47 |
| Msa1030970 | Msa1373430 | -0.815808 | 7.646557e-52 | -8.615850e-47 |
| Msa1036710 | Msa1373430 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa1073070 | Msa1373430 | 0.804861 | 1.762822e-49 | -8.615850e-47 |
| Msa1075220 | Msa1373430 | 0.813942 | 1.982829e-51 | -8.615850e-47 |
| Msa0239240 | Msa1373430 | -0.802366 | 5.805374e-49 | -8.615850e-47 |
| Msa0285450 | Msa1373430 | -0.844194 | 8.792736e-59 | -8.615850e-47 |
| Msa0287410 | Msa1373430 | -0.804569 | 2.028421e-49 | -8.615850e-47 |
| Msa0306210 | Msa1373430 | 0.846966 | 1.558070e-59 | -8.615850e-47 |
| Msa0313560 | Msa1373430 | -0.807117 | 5.911806e-50 | -8.615850e-47 |
| Msa0319170 | Msa1373430 | -0.822164 | 2.742900e-53 | -8.615850e-47 |
| Msa0326110 | Msa1373430 | -0.800727 | 1.258087e-48 | -8.615850e-47 |
| Msa0330390 | Msa1373430 | -0.804624 | 1.975335e-49 | -8.615850e-47 |
| Msa0344690 | Msa1373430 | 0.803376 | 3.590465e-49 | -8.615850e-47 |
| Msa1122520 | Msa1373430 | -0.841044 | 6.033324e-58 | -8.615850e-47 |
| Msa1124540 | Msa1373430 | 0.841631 | 4.227036e-58 | -8.615850e-47 |
| Msa1132970 | Msa1373430 | -0.806390 | 8.419851e-50 | -8.615850e-47 |
| Msa1144720 | Msa1373430 | 0.825126 | 5.556711e-54 | -8.615850e-47 |
| Msa1202770 | Msa1373430 | 0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0493250 | Msa1373430 | -0.811356 | 7.293834e-51 | -8.615850e-47 |
| Msa0532350 | Msa1373430 | -0.800393 | 1.471744e-48 | -8.615850e-47 |
| Msa0555020 | Msa1373430 | -0.818027 | 2.428318e-52 | -8.615850e-47 |
| Msa0598880 | Msa1373430 | 0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0843780 | Msa1373430 | 0.803437 | 3.488386e-49 | -8.615850e-47 |
| Msa0865510 | Msa1373430 | 0.812282 | 4.586123e-51 | -8.615850e-47 |
| Msa0876850 | Msa1373430 | 0.826818 | 2.201228e-54 | -8.615850e-47 |
| Msa0886330 | Msa1373430 | 0.850325 | 1.826823e-60 | -8.615850e-47 |
| Msa0895500 | Msa1373430 | -0.818677 | 1.729728e-52 | -8.615850e-47 |
| Msa0903390 | Msa1373430 | -0.804051 | 2.599922e-49 | -8.615850e-47 |
| Msa0909110 | Msa1373430 | -0.806052 | 9.917272e-50 | -8.615850e-47 |
| Msa0925870 | Msa1373430 | -0.808100 | 3.655332e-50 | -8.615850e-47 |
| Msa0935910 | Msa1373430 | -0.804947 | 1.691423e-49 | -8.615850e-47 |
| Msa0942550 | Msa1373430 | 0.805921 | 1.056674e-49 | -8.615850e-47 |
| Msa0942560 | Msa1373430 | 0.805030 | 1.625276e-49 | -8.615850e-47 |
| Msa0947100 | Msa1373430 | -0.804806 | 1.809888e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373430 | MtrunA17_Chr1g0213261 | 95.683 | 417 | 6 | 2 | 1 | 415 | 1 | 407 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1373430 | AT2G44520.1 | 67.222 | 360 | 104 | 4 | 55 | 412 | 81 | 428 | 4.75e-173 | 491 |
Find 143 sgRNAs with CRISPR-Local
Find 473 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGGCTGCTTTGTATTTC+TGG | 0.083161 | tig0019430:+158251 | Msa1373430:CDS |
| ACGATTCTTCATACTGTATT+TGG | 0.084333 | tig0019430:-154336 | None:intergenic |
| TCTCAAAGCAAAATCCTTAT+TGG | 0.138649 | tig0019430:-159822 | None:intergenic |
| CGGTGCTATTCCACCACTTT+TGG | 0.152134 | tig0019430:+156051 | Msa1373430:CDS |
| CTTGCCTGCCTTTGATCTTT+TGG | 0.182188 | tig0019430:-159609 | None:intergenic |
| GGTGCCAATCATCGCAATTT+TGG | 0.200697 | tig0019430:-154462 | None:intergenic |
| TTTGGGCTGCCCAGTTTATT+TGG | 0.206477 | tig0019430:-154318 | None:intergenic |
| TTGCTGGTGGTTGCAACATC+TGG | 0.235101 | tig0019430:+154864 | Msa1373430:CDS |
| TCTAATCCCTTTGGGTTTCT+TGG | 0.239936 | tig0019430:+158782 | Msa1373430:CDS |
| TTCAGATGGGCTGCAGCTTC+TGG | 0.254382 | tig0019430:+158202 | Msa1373430:intron |
| CTGGGCATCCTCTGTTGGTT+TGG | 0.287378 | tig0019430:+155755 | Msa1373430:CDS |
| TTGACTCGTTCTCCTCATTA+TGG | 0.287688 | tig0019430:-155688 | None:intergenic |
| TACTCTCTTGCTGATCCATC+TGG | 0.304688 | tig0019430:+158720 | Msa1373430:CDS |
| CGATTCTTCATACTGTATTT+GGG | 0.308623 | tig0019430:-154335 | None:intergenic |
| CTCTATATATCTAATCCCTT+TGG | 0.314375 | tig0019430:+158773 | Msa1373430:CDS |
| CAATTGTCATCCAAATAAAC+TGG | 0.316665 | tig0019430:+154308 | Msa1373430:five_prime_UTR |
| AAAACTAAATTATAGTTTGC+TGG | 0.324778 | tig0019430:+154848 | Msa1373430:intron |
| CCACCATGTTTAAGAGGAAT+TGG | 0.325402 | tig0019430:+154483 | Msa1373430:CDS |
| ATGGCCTTTAAAAGCCAATA+AGG | 0.333255 | tig0019430:+159808 | Msa1373430:three_prime_UTR |
| TCTATATATCTAATCCCTTT+GGG | 0.339285 | tig0019430:+158774 | Msa1373430:CDS |
| CATGCTTTCCTATACTTGCT+TGG | 0.339997 | tig0019430:+154929 | Msa1373430:CDS |
| AACACGATGATCACTTCTAT+TGG | 0.340614 | tig0019430:-154369 | None:intergenic |
| ACTAAATAGTTTGATTCTTC+CGG | 0.355070 | tig0019430:+158234 | Msa1373430:CDS |
| ACAGGATTTGTGTTGGGGAG+TGG | 0.363811 | tig0019430:+154888 | Msa1373430:CDS |
| GCATCCTCTGTTGGTTTGGC+TGG | 0.366724 | tig0019430:+155759 | Msa1373430:CDS |
| TCACTACCTGCGTTGCTAGT+AGG | 0.367115 | tig0019430:-155788 | None:intergenic |
| ATCTCCCTCGCTCGTCACTA+TGG | 0.371552 | tig0019430:+154656 | Msa1373430:CDS |
| CTTCTGCTTTGGTCTGAAGC+TGG | 0.372465 | tig0019430:+154425 | Msa1373430:five_prime_UTR |
| AGGAGGAGAGAGATGAAGAT+TGG | 0.373127 | tig0019430:-154606 | None:intergenic |
| ACTCACCGAACGACAGTTAT+CGG | 0.375109 | tig0019430:-154254 | None:intergenic |
| ATGCTTTCCTATACTTGCTT+GGG | 0.376660 | tig0019430:+154930 | Msa1373430:CDS |
| ATCTGCCAGCACTTTAAATC+AGG | 0.389440 | tig0019430:+154971 | Msa1373430:CDS |
| GGTTCACCTGAGACGAGCTT+TGG | 0.397137 | tig0019430:-154699 | None:intergenic |
| AATTGACGAGTCTGGAATAC+AGG | 0.401617 | tig0019430:-154517 | None:intergenic |
| AACCCCAAAATTGCGATGAT+TGG | 0.401857 | tig0019430:+154458 | Msa1373430:exon |
| GATGAGATCGGTGGACTTAG+AGG | 0.410832 | tig0019430:-154636 | None:intergenic |
| CAGTACCTCATGCAGTTGGC+TGG | 0.427514 | tig0019430:+155736 | Msa1373430:CDS |
| CACTACCTGCGTTGCTAGTA+GGG | 0.429355 | tig0019430:-155787 | None:intergenic |
| TCTGGGACAGGATTTGTGTT+GGG | 0.431030 | tig0019430:+154882 | Msa1373430:CDS |
| CATTGTGTAATATTTATCAT+TGG | 0.433851 | tig0019430:+159705 | Msa1373430:exon |
| AACTCTCCAAAGCTCGTCTC+AGG | 0.438797 | tig0019430:+154693 | Msa1373430:CDS |
| CGAAGAGGAATTGACGAGTC+TGG | 0.444141 | tig0019430:-154525 | None:intergenic |
| GTGGACTTAGAGGCGGAAAC+AGG | 0.444880 | tig0019430:-154626 | None:intergenic |
| CATGGTACCCAAGCAAGTAT+AGG | 0.445696 | tig0019430:-154937 | None:intergenic |
| ACACGATGATCACTTCTATT+GGG | 0.449731 | tig0019430:-154368 | None:intergenic |
| TGGGCTTGCTGCTTCCAACC+TGG | 0.449902 | tig0019430:+155958 | Msa1373430:CDS |
| ACGGGATGAATCTGCTTCAA+TGG | 0.463326 | tig0019430:-156004 | None:intergenic |
| TTGGCACCACCATGTTTAAG+AGG | 0.472232 | tig0019430:+154477 | Msa1373430:CDS |
| GAGACGAGCTTTGGAGAGTT+CGG | 0.473314 | tig0019430:-154690 | None:intergenic |
| GTTGGCTGGGCATCCTCTGT+TGG | 0.479779 | tig0019430:+155750 | Msa1373430:CDS |
| AGATTCATCCCGTAAATACA+TGG | 0.482928 | tig0019430:+156014 | Msa1373430:CDS |
| CAGACTAATATGTTAGCTGC+TGG | 0.486361 | tig0019430:+155938 | Msa1373430:intron |
| AGAGAGATGAAGATTGGAAG+AGG | 0.487459 | tig0019430:-154600 | None:intergenic |
| CGTTGACTTCTAAGAAGTGT+TGG | 0.489983 | tig0019430:-159522 | None:intergenic |
| TGAAGAAGAAGAAGAGAAGG+TGG | 0.492582 | tig0019430:-154576 | None:intergenic |
| TACTTGCTTGGGTACCATGA+TGG | 0.499620 | tig0019430:+154941 | Msa1373430:CDS |
| TGCTGGTGGTTGCAACATCT+GGG | 0.506788 | tig0019430:+154865 | Msa1373430:CDS |
| GAGAGATGAAGATTGGAAGA+GGG | 0.506932 | tig0019430:-154599 | None:intergenic |
| CAAAAGATCAAAGGCAGGCA+AGG | 0.508343 | tig0019430:+159610 | Msa1373430:CDS |
| TCTGAAGTTTCCACAGAGGA+TGG | 0.508508 | tig0019430:-159565 | None:intergenic |
| GGGTGAAGAAGAAGAAGAGA+AGG | 0.509150 | tig0019430:-154579 | None:intergenic |
| ATCTGGGACAGGATTTGTGT+TGG | 0.513221 | tig0019430:+154881 | Msa1373430:CDS |
| TGAAGTTTCCACAGAGGATG+GGG | 0.513270 | tig0019430:-159563 | None:intergenic |
| ATCCCGTAAATACATGGGTG+GGG | 0.515022 | tig0019430:+156020 | Msa1373430:CDS |
| GGATTTGTGTTGGGGAGTGG+TGG | 0.519157 | tig0019430:+154891 | Msa1373430:CDS |
| ATGATCACTTCTATTGGGCT+CGG | 0.522941 | tig0019430:-154363 | None:intergenic |
| AACTGTCGTTCGGTGAGTGT+CGG | 0.524200 | tig0019430:+154259 | Msa1373430:five_prime_UTR |
| AGTAACCTGATTTAAAGTGC+TGG | 0.526743 | tig0019430:-154976 | None:intergenic |
| CTGAAGTTTCCACAGAGGAT+GGG | 0.528347 | tig0019430:-159564 | None:intergenic |
| GAAGTTGTGAAGAGACGAAG+AGG | 0.532052 | tig0019430:-154540 | None:intergenic |
| TGGGCGGAAAACAGCATTGG+TGG | 0.535298 | tig0019430:+158740 | Msa1373430:CDS |
| AGACTAATATGTTAGCTGCT+GGG | 0.538050 | tig0019430:+155939 | Msa1373430:intron |
| GTGGTTGCAACATCTGGGAC+AGG | 0.538338 | tig0019430:+154870 | Msa1373430:CDS |
| TCCGAGCTCTTTCCTTAGTG+CGG | 0.538953 | tig0019430:-159426 | None:intergenic |
| CATCCCGTAAATACATGGGT+GGG | 0.539017 | tig0019430:+156019 | Msa1373430:CDS |
| TGCCAGAAATACAAAGCAGC+CGG | 0.540109 | tig0019430:-158253 | None:intergenic |
| CACAATTACCCCAAAAGTGG+TGG | 0.543366 | tig0019430:-156061 | None:intergenic |
| GTACACAATTACCCCAAAAG+TGG | 0.545961 | tig0019430:-156064 | None:intergenic |
| CTGGGACAGGATTTGTGTTG+GGG | 0.546764 | tig0019430:+154883 | Msa1373430:CDS |
| AAACAGCATTGGTGGCTATG+AGG | 0.548674 | tig0019430:+158748 | Msa1373430:CDS |
| ACTCTCTTGCTGATCCATCT+GGG | 0.554804 | tig0019430:+158721 | Msa1373430:CDS |
| TATTACACAATGTCGTATGA+AGG | 0.554978 | tig0019430:-159694 | None:intergenic |
| GCAATGGAAGCATATGCTAC+AGG | 0.556784 | tig0019430:-159649 | None:intergenic |
| ATCTGGGCGGAAAACAGCAT+TGG | 0.557115 | tig0019430:+158737 | Msa1373430:CDS |
| TCAGAGATGTATGACAAGAA+TGG | 0.558162 | tig0019430:+159583 | Msa1373430:CDS |
| AGTCAAAGGCCACTGCCCTC+AGG | 0.558809 | tig0019430:+155705 | Msa1373430:CDS |
| TCCCGTAAATACATGGGTGG+GGG | 0.566400 | tig0019430:+156021 | Msa1373430:CDS |
| AGTACCTCATGCAGTTGGCT+GGG | 0.566631 | tig0019430:+155737 | Msa1373430:CDS |
| AACGGGGAGATAAAGAAGAC+TGG | 0.572845 | tig0019430:-159461 | None:intergenic |
| TTCTTAGAAGTCAACGCAGA+GGG | 0.574626 | tig0019430:+159529 | Msa1373430:CDS |
| TCTAACCGATAACTGTCGTT+CGG | 0.576035 | tig0019430:+154249 | Msa1373430:five_prime_UTR |
| AATGGTAACCAAAAGATCAA+AGG | 0.578992 | tig0019430:+159601 | Msa1373430:CDS |
| GGCAGATGCAGCAACCATCA+TGG | 0.579018 | tig0019430:-154955 | None:intergenic |
| CGTGAGGACTATGCTGCGGG+AGG | 0.580386 | tig0019430:+158310 | Msa1373430:CDS |
| AAAAGATCAAAGGCAGGCAA+GGG | 0.583612 | tig0019430:+159611 | Msa1373430:CDS |
| CAAGCAAGTATAGGAAAGCA+TGG | 0.584361 | tig0019430:-154928 | None:intergenic |
| ACCGCACTAAGGAAAGAGCT+CGG | 0.586450 | tig0019430:+159425 | Msa1373430:CDS |
| TCAAGAATGATGCCATAATG+AGG | 0.587815 | tig0019430:+155676 | Msa1373430:CDS |
| TAATGAGGAGAACGAGTCAA+AGG | 0.594303 | tig0019430:+155691 | Msa1373430:CDS |
| TATTGCAAGTGTAAGTGCAG+TGG | 0.601469 | tig0019430:-159374 | None:intergenic |
| TGTCGTGAGGACTATGCTGC+GGG | 0.601768 | tig0019430:+158307 | Msa1373430:CDS |
| ACTAAATTATAGTTTGCTGG+TGG | 0.602277 | tig0019430:+154851 | Msa1373430:intron |
| GTTATGCGTCCTGAGGGCAG+TGG | 0.605804 | tig0019430:-155714 | None:intergenic |
| CATATGCCAAGAAACCCAAA+GGG | 0.606346 | tig0019430:-158788 | None:intergenic |
| AGGTACTGTTATGCGTCCTG+AGG | 0.608440 | tig0019430:-155721 | None:intergenic |
| AAATGAATACAGAACCAGGT+TGG | 0.610247 | tig0019430:-155972 | None:intergenic |
| GACTTAGAGGCGGAAACAGG+AGG | 0.611061 | tig0019430:-154623 | None:intergenic |
| GTTTCCATAGTGACGAGCGA+GGG | 0.612164 | tig0019430:-154660 | None:intergenic |
| TCATCCCGTAAATACATGGG+TGG | 0.614519 | tig0019430:+156018 | Msa1373430:CDS |
| GTGAGGACTATGCTGCGGGA+GGG | 0.614597 | tig0019430:+158311 | Msa1373430:CDS |
| TCATATGCCAAGAAACCCAA+AGG | 0.617515 | tig0019430:-158789 | None:intergenic |
| CCAATTCCTCTTAAACATGG+TGG | 0.621027 | tig0019430:-154483 | None:intergenic |
| ACAATGTCGTATGAAGGAGC+AGG | 0.622299 | tig0019430:-159688 | None:intergenic |
| TAAGCAAGGGCCATAAAATG+TGG | 0.623266 | tig0019430:-158280 | None:intergenic |
| ACGAGCGAGGGAGATGAGAT+CGG | 0.623642 | tig0019430:-154648 | None:intergenic |
| GTAACCAAAAGATCAAAGGC+AGG | 0.624561 | tig0019430:+159605 | Msa1373430:CDS |
| AGTTTCCATAGTGACGAGCG+AGG | 0.625401 | tig0019430:-154661 | None:intergenic |
| ATAACAGTACCTCATGCAGT+TGG | 0.628319 | tig0019430:+155732 | Msa1373430:CDS |
| TTTGAAATCCCCATCCTCTG+TGG | 0.629315 | tig0019430:+159555 | Msa1373430:CDS |
| GGTACTGTTATGCGTCCTGA+GGG | 0.629374 | tig0019430:-155720 | None:intergenic |
| ATTCCAATTCCTCTTAAACA+TGG | 0.631936 | tig0019430:-154486 | None:intergenic |
| GCTTCTAATTCACCGCCGCA+CGG | 0.637444 | tig0019430:+159495 | Msa1373430:CDS |
| CCTCACGACACATATAAGCA+AGG | 0.639408 | tig0019430:-158294 | None:intergenic |
| ATGGAAGCATATGCTACAGG+TGG | 0.647561 | tig0019430:-159646 | None:intergenic |
| CTCACGACACATATAAGCAA+GGG | 0.650006 | tig0019430:-158293 | None:intergenic |
| GATGCCCAGCCAACTGCATG+AGG | 0.652113 | tig0019430:-155741 | None:intergenic |
| AGTGTCGGAGAGCAATCACT+AGG | 0.661547 | tig0019430:+154274 | Msa1373430:five_prime_UTR |
| GATTCATCCCGTAAATACAT+GGG | 0.664572 | tig0019430:+156015 | Msa1373430:CDS |
| AATTGTCATCCAAATAAACT+GGG | 0.664969 | tig0019430:+154309 | Msa1373430:five_prime_UTR |
| TGTGCCAGCCAAACCAACAG+AGG | 0.665249 | tig0019430:-155763 | None:intergenic |
| CACAGCCCTACTAGCAACGC+AGG | 0.666638 | tig0019430:+155782 | Msa1373430:CDS |
| ATACAAATGAATACAGAACC+AGG | 0.669177 | tig0019430:-155976 | None:intergenic |
| ATTGACGAGTCTGGAATACA+GGG | 0.669841 | tig0019430:-154516 | None:intergenic |
| AGCGAGGGAGATGAGATCGG+TGG | 0.677460 | tig0019430:-154645 | None:intergenic |
| GAGATCGGTGGACTTAGAGG+CGG | 0.679183 | tig0019430:-154633 | None:intergenic |
| CCTTGCTTATATGTGTCGTG+AGG | 0.692006 | tig0019430:+158294 | Msa1373430:CDS |
| TCTATAAAACGAAAACGCTG+CGG | 0.692808 | tig0019430:-159401 | None:intergenic |
| AGTGTTGGTTATCCGTGCGG+CGG | 0.696361 | tig0019430:-159507 | None:intergenic |
| GTGTCGTGAGGACTATGCTG+CGG | 0.715426 | tig0019430:+158306 | Msa1373430:CDS |
| AGAAGTGTTGGTTATCCGTG+CGG | 0.717760 | tig0019430:-159510 | None:intergenic |
| CTCTTGCTGATCCATCTGGG+CGG | 0.721838 | tig0019430:+158724 | Msa1373430:CDS |
| CTTCTTAGAAGTCAACGCAG+AGG | 0.741087 | tig0019430:+159528 | Msa1373430:CDS |
| CATCTCTGAAGTTTCCACAG+AGG | 0.745544 | tig0019430:-159569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAAAAGTGAA+AGG | - | tig0019430:154723-154742 | None:intergenic | 10.0% |
| !!! | ATTTTAATATATAGCTATTT+TGG | - | tig0019430:157397-157416 | None:intergenic | 10.0% |
| !!! | CAAATTATTTTGAAATTATA+TGG | + | tig0019430:158381-158400 | Msa1373430:intron | 10.0% |
| !!! | CATTTTTTTTTTTTTTTTGA+GGG | - | tig0019430:158560-158579 | None:intergenic | 10.0% |
| !! | ATTAATATGATAGAACATTA+TGG | + | tig0019430:155208-155227 | Msa1373430:intron | 15.0% |
| !!! | AAATGTTGATAAAAAATCTA+AGG | - | tig0019430:155606-155625 | None:intergenic | 15.0% |
| !! | ACATAATTAGATCTATTAAA+TGG | + | tig0019430:155628-155647 | Msa1373430:intron | 15.0% |
| !!! | TTATTTTAGTATTAGACAAT+TGG | + | tig0019430:157852-157871 | Msa1373430:intron | 15.0% |
| !!! | GCATTTTTTTTTTTTTTTTG+AGG | - | tig0019430:158561-158580 | None:intergenic | 15.0% |
| !! | TAAATGAATGAAAAATATTG+AGG | - | tig0019430:158629-158648 | None:intergenic | 15.0% |
| !!! | TTTTCTTATAATGTTTTGTT+TGG | + | tig0019430:159750-159769 | Msa1373430:three_prime_UTR | 15.0% |
| !!! | ATTGTAATTGTTTTTTCAAA+TGG | + | tig0019430:159789-159808 | Msa1373430:three_prime_UTR | 15.0% |
| !!! | AAAACTAAATTATAGTTTGC+TGG | + | tig0019430:154848-154867 | Msa1373430:intron | 20.0% |
| !!! | TTAAATCAGGTTACTTTTTT+AGG | + | tig0019430:154984-155003 | Msa1373430:intron | 20.0% |
| !!! | GTTTTACTTGTATATGAATT+AGG | + | tig0019430:155290-155309 | Msa1373430:intron | 20.0% |
| !!! | TTTAGTTTTTAGATATCACA+TGG | - | tig0019430:156157-156176 | None:intergenic | 20.0% |
| !! | TGGAACCTTATAATAATAAT+AGG | + | tig0019430:156232-156251 | Msa1373430:intron | 20.0% |
| !!! | GAAATTAACGAAAAAGTATA+TGG | + | tig0019430:156349-156368 | Msa1373430:intron | 20.0% |
| !!! | CTTTTGATTCTCTTTAATTT+GGG | - | tig0019430:156418-156437 | None:intergenic | 20.0% |
| !!! | TCTTTTGATTCTCTTTAATT+TGG | - | tig0019430:156419-156438 | None:intergenic | 20.0% |
| !! | GAATTCAAAATTGTTCAATT+AGG | - | tig0019430:156556-156575 | None:intergenic | 20.0% |
| !! | TTTGTATAAATAAGGTCATT+TGG | - | tig0019430:156593-156612 | None:intergenic | 20.0% |
| !!! | ACCTTATTTATACAAACAAA+GGG | + | tig0019430:156597-156616 | Msa1373430:intron | 20.0% |
| !! | CAAATATAAAACTTTGTATG+TGG | - | tig0019430:156893-156912 | None:intergenic | 20.0% |
| !!! | TTAATATATAGCTATTTTGG+AGG | - | tig0019430:157394-157413 | None:intergenic | 20.0% |
| !! | AGATTATAAGCATGAAAAAT+TGG | - | tig0019430:157754-157773 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTCATTTAGTGA+TGG | + | tig0019430:158633-158652 | Msa1373430:intron | 20.0% |
| !! | CATTGTGTAATATTTATCAT+TGG | + | tig0019430:159705-159724 | Msa1373430:exon | 20.0% |
| !!! | ATTTTGTACAAATATGCTAA+TGG | + | tig0019430:159882-159901 | Msa1373430:three_prime_UTR | 20.0% |
| ! | AATTGTCATCCAAATAAACT+GGG | + | tig0019430:154309-154328 | Msa1373430:five_prime_UTR | 25.0% |
| !!! | GTTACTTTTTTAGGACAATA+TGG | + | tig0019430:154993-155012 | Msa1373430:intron | 25.0% |
| ! | AATATGATAGAACATTATGG+TGG | + | tig0019430:155211-155230 | Msa1373430:intron | 25.0% |
| ! | ATATGAATTAGGAAAGATAG+AGG | + | tig0019430:155301-155320 | Msa1373430:intron | 25.0% |
| ! | ATAAAAGAGACGAAATTGAT+TGG | + | tig0019430:155423-155442 | Msa1373430:intron | 25.0% |
| !!! | TAAGGTTTTGTTTGAGAATT+TGG | - | tig0019430:155588-155607 | None:intergenic | 25.0% |
| !! | TAAATGGTTGTGTCTATTTT+AGG | + | tig0019430:155644-155663 | Msa1373430:intron | 25.0% |
| !! | AGAAAAACATTTGAGGTTTA+AGG | - | tig0019430:155854-155873 | None:intergenic | 25.0% |
| !! | TTTTGTGAGAAAAACATTTG+AGG | - | tig0019430:155861-155880 | None:intergenic | 25.0% |
| ! | AGGGACCTATTATTATTATA+AGG | - | tig0019430:156240-156259 | None:intergenic | 25.0% |
| ! | AAACTACAGTAACAAAACAA+GGG | - | tig0019430:156306-156325 | None:intergenic | 25.0% |
| !! | TCGTTTTCTATACATGTAAA+AGG | + | tig0019430:156327-156346 | Msa1373430:intron | 25.0% |
| ! | GTATAGTTAGTGATATTGAT+AGG | + | tig0019430:156390-156409 | Msa1373430:intron | 25.0% |
| !! | GACCTTATTTATACAAACAA+AGG | + | tig0019430:156596-156615 | Msa1373430:intron | 25.0% |
| ! | TCCTTTCTTTCAAATTCAAA+GGG | + | tig0019430:156917-156936 | Msa1373430:intron | 25.0% |
| !!! | TGTTGTGGTTTTTTTATTCT+TGG | - | tig0019430:157359-157378 | None:intergenic | 25.0% |
| !!! | TCATTTATATTTTGACTGCT+TGG | + | tig0019430:157682-157701 | Msa1373430:intron | 25.0% |
| ! | ACTGTAGATGAATAACTTAA+TGG | - | tig0019430:158063-158082 | None:intergenic | 25.0% |
| ! | TGAAAATAACCCACAAAAAA+AGG | - | tig0019430:158186-158205 | None:intergenic | 25.0% |
| ! | ACTAAATAGTTTGATTCTTC+CGG | + | tig0019430:158234-158253 | Msa1373430:CDS | 25.0% |
| ! | GTTTATATAGTGATGAAGTT+TGG | + | tig0019430:158351-158370 | Msa1373430:intron | 25.0% |
| !! | CCAAAAAAATGTTATTTGTG+CGG | - | tig0019430:158494-158513 | None:intergenic | 25.0% |
| !!! | CGCACAAATAACATTTTTTT+GGG | + | tig0019430:158492-158511 | Msa1373430:intron | 25.0% |
| ! | AAAAAAAATGCATGTTACAC+TGG | + | tig0019430:158570-158589 | Msa1373430:intron | 25.0% |
| ! | TCTATATATCTAATCCCTTT+GGG | + | tig0019430:158774-158793 | Msa1373430:CDS | 25.0% |
| ! | CATAGGCTATAATCTTAAAT+AGG | - | tig0019430:158952-158971 | None:intergenic | 25.0% |
| ! | TACAGCAACATAAATTTCAT+AGG | - | tig0019430:158969-158988 | None:intergenic | 25.0% |
| ! | ATGAAATTTATGTTGCTGTA+TGG | + | tig0019430:158969-158988 | Msa1373430:intron | 25.0% |
| ! | AAAAGGCTTGAAATTCAAAA+AGG | - | tig0019430:159061-159080 | None:intergenic | 25.0% |
| ! | TTAACGAAATCCAATTCAAA+TGG | - | tig0019430:159223-159242 | None:intergenic | 25.0% |
| !!! | AAATCCTTATTGGCTTTTAA+AGG | - | tig0019430:159815-159834 | None:intergenic | 25.0% |
| CAATTGTCATCCAAATAAAC+TGG | + | tig0019430:154308-154327 | Msa1373430:five_prime_UTR | 30.0% | |
| CGATTCTTCATACTGTATTT+GGG | - | tig0019430:154338-154357 | None:intergenic | 30.0% | |
| ACGATTCTTCATACTGTATT+TGG | - | tig0019430:154339-154358 | None:intergenic | 30.0% | |
| ATTCCAATTCCTCTTAAACA+TGG | - | tig0019430:154489-154508 | None:intergenic | 30.0% | |
| !! | ACTAAATTATAGTTTGCTGG+TGG | + | tig0019430:154851-154870 | Msa1373430:intron | 30.0% |
| ACGATGGATAAGTATATAGT+AGG | - | tig0019430:155025-155044 | None:intergenic | 30.0% | |
| GTTGGTATTAAAACATACGA+TGG | - | tig0019430:155041-155060 | None:intergenic | 30.0% | |
| TCTGTACGAGGAAATAAAAA+AGG | + | tig0019430:155133-155152 | Msa1373430:intron | 30.0% | |
| AATTAGGAAAGATAGAGGAA+TGG | + | tig0019430:155306-155325 | Msa1373430:intron | 30.0% | |
| !! | CATGGTTTATTTTCCTTCAT+TGG | - | tig0019430:155509-155528 | None:intergenic | 30.0% |
| CAATGAAGGAAAATAAACCA+TGG | + | tig0019430:155507-155526 | Msa1373430:intron | 30.0% | |
| AGGGATAAGAAAAAAAGGAA+GGG | - | tig0019430:155565-155584 | None:intergenic | 30.0% | |
| TTTGGAGGGATAAGAAAAAA+AGG | - | tig0019430:155570-155589 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTGAGAATTTGGA+GGG | - | tig0019430:155584-155603 | None:intergenic | 30.0% |
| !! | AACATTGTAGCTTTATGACA+AGG | + | tig0019430:155909-155928 | Msa1373430:intron | 30.0% |
| ATACAAATGAATACAGAACC+AGG | - | tig0019430:155979-155998 | None:intergenic | 30.0% | |
| ATGCATAAGAAAGAGACAAA+AGG | - | tig0019430:156096-156115 | None:intergenic | 30.0% | |
| !! | GCTTTGATGAACTTTTGAAA+GGG | - | tig0019430:156259-156278 | None:intergenic | 30.0% |
| ! | TGCTTTGATGAACTTTTGAA+AGG | - | tig0019430:156260-156279 | None:intergenic | 30.0% |
| GAAACTACAGTAACAAAACA+AGG | - | tig0019430:156307-156326 | None:intergenic | 30.0% | |
| !!! | TTAGGAACCTTATTGGTTTT+GGG | - | tig0019430:156538-156557 | None:intergenic | 30.0% |
| !!! | ATTAGGAACCTTATTGGTTT+TGG | - | tig0019430:156539-156558 | None:intergenic | 30.0% |
| TGTTCAATTAGGAACCTTAT+TGG | - | tig0019430:156545-156564 | None:intergenic | 30.0% | |
| ! | GCCCTTTGTTTGTATAAATA+AGG | - | tig0019430:156601-156620 | None:intergenic | 30.0% |
| !! | ATGCAGTATTTGTGTTGATT+AGG | - | tig0019430:156656-156675 | None:intergenic | 30.0% |
| ATAAAACTTTGTATGTGGCT+TGG | - | tig0019430:156888-156907 | None:intergenic | 30.0% | |
| CTCCTTTCTTTCAAATTCAA+AGG | + | tig0019430:156916-156935 | Msa1373430:intron | 30.0% | |
| TCCCTTTGAATTTGAAAGAA+AGG | - | tig0019430:156921-156940 | None:intergenic | 30.0% | |
| TCTTTCAAATTCAAAGGGAA+TGG | + | tig0019430:156922-156941 | Msa1373430:intron | 30.0% | |
| AAAGGTTGTTGATGCTAAAA+TGG | - | tig0019430:157109-157128 | None:intergenic | 30.0% | |
| GTCAGTATCATCTTATGTTA+TGG | + | tig0019430:157597-157616 | Msa1373430:intron | 30.0% | |
| ATCTTATACATTTCTTCCTG+TGG | + | tig0019430:157718-157737 | Msa1373430:intron | 30.0% | |
| CAGCATATAGACAATTAATC+TGG | - | tig0019430:157925-157944 | None:intergenic | 30.0% | |
| AATTGTCTATATGCTGAAAG+TGG | + | tig0019430:157929-157948 | Msa1373430:intron | 30.0% | |
| AAATCCAATAGAATGAGAGA+AGG | - | tig0019430:157998-158017 | None:intergenic | 30.0% | |
| TTCTCTCATTCTATTGGATT+TGG | + | tig0019430:157997-158016 | Msa1373430:intron | 30.0% | |
| !! | TTTTGTGGGTTATTTTCAGA+TGG | + | tig0019430:158188-158207 | Msa1373430:intron | 30.0% |
| !! | TTTGTGGGTTATTTTCAGAT+GGG | + | tig0019430:158189-158208 | Msa1373430:intron | 30.0% |
| TTTCCAGATATAGAAACCTA+CGG | + | tig0019430:158438-158457 | Msa1373430:intron | 30.0% | |
| ATTCAGTTAAACTAAACCGT+AGG | - | tig0019430:158457-158476 | None:intergenic | 30.0% | |
| !!! | CCGCACAAATAACATTTTTT+TGG | + | tig0019430:158491-158510 | Msa1373430:intron | 30.0% |
| CTCTATATATCTAATCCCTT+TGG | + | tig0019430:158773-158792 | Msa1373430:CDS | 30.0% | |
| !! | TATACTCAAAACTCTGAAAC+AGG | + | tig0019430:159185-159204 | Msa1373430:intron | 30.0% |
| !! | ATACTCAAAACTCTGAAACA+GGG | + | tig0019430:159186-159205 | Msa1373430:intron | 30.0% |
| TTGAATTGGATTTCGTTAAG+CGG | + | tig0019430:159224-159243 | Msa1373430:intron | 30.0% | |
| !!! | ATGTTTTGACCACAATGTTT+TGG | + | tig0019430:159290-159309 | Msa1373430:intron | 30.0% |
| AATGGTAACCAAAAGATCAA+AGG | + | tig0019430:159601-159620 | Msa1373430:CDS | 30.0% | |
| TATTACACAATGTCGTATGA+AGG | - | tig0019430:159697-159716 | None:intergenic | 30.0% | |
| TCTCAAAGCAAAATCCTTAT+TGG | - | tig0019430:159825-159844 | None:intergenic | 30.0% | |
| ACACGATGATCACTTCTATT+GGG | - | tig0019430:154371-154390 | None:intergenic | 35.0% | |
| AACACGATGATCACTTCTAT+TGG | - | tig0019430:154372-154391 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCTTCTGCTT+TGG | + | tig0019430:154414-154433 | Msa1373430:five_prime_UTR | 35.0% | |
| ATGCTTTCCTATACTTGCTT+GGG | + | tig0019430:154930-154949 | Msa1373430:CDS | 35.0% | |
| ! | AGTAACCTGATTTAAAGTGC+TGG | - | tig0019430:154979-154998 | None:intergenic | 35.0% |
| CAGAATTAAGTTAACAGACG+CGG | - | tig0019430:155063-155082 | None:intergenic | 35.0% | |
| TAGACTAGATAGACTGATAG+AGG | + | tig0019430:155099-155118 | Msa1373430:intron | 35.0% | |
| GAAAGATAGAGGAATGGAAA+GGG | + | tig0019430:155312-155331 | Msa1373430:intron | 35.0% | |
| GGAAAATAAACCATGGAAAG+CGG | + | tig0019430:155514-155533 | Msa1373430:intron | 35.0% | |
| GAAAATAAACCATGGAAAGC+GGG | + | tig0019430:155515-155534 | Msa1373430:intron | 35.0% | |
| AAAATAAACCATGGAAAGCG+GGG | + | tig0019430:155516-155535 | Msa1373430:intron | 35.0% | |
| AAGAAAAAAAGGAAGGGGAA+GGG | - | tig0019430:155559-155578 | None:intergenic | 35.0% | |
| TAAGAAAAAAAGGAAGGGGA+AGG | - | tig0019430:155560-155579 | None:intergenic | 35.0% | |
| GGGATAAGAAAAAAAGGAAG+GGG | - | tig0019430:155564-155583 | None:intergenic | 35.0% | |
| GAGGGATAAGAAAAAAAGGA+AGG | - | tig0019430:155566-155585 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTTGAGAATTTGG+AGG | - | tig0019430:155585-155604 | None:intergenic | 35.0% |
| TCAAGAATGATGCCATAATG+AGG | + | tig0019430:155676-155695 | Msa1373430:CDS | 35.0% | |
| AGACTAATATGTTAGCTGCT+GGG | + | tig0019430:155939-155958 | Msa1373430:intron | 35.0% | |
| AAATGAATACAGAACCAGGT+TGG | - | tig0019430:155975-155994 | None:intergenic | 35.0% | |
| AGATTCATCCCGTAAATACA+TGG | + | tig0019430:156014-156033 | Msa1373430:CDS | 35.0% | |
| GATTCATCCCGTAAATACAT+GGG | + | tig0019430:156015-156034 | Msa1373430:CDS | 35.0% | |
| CTACTCTCAACAACAATTTG+GGG | - | tig0019430:156205-156224 | None:intergenic | 35.0% | |
| CCTACTCTCAACAACAATTT+GGG | - | tig0019430:156206-156225 | None:intergenic | 35.0% | |
| ! | CCAAATTGTTGTTGAGAGTA+GGG | + | tig0019430:156204-156223 | Msa1373430:intron | 35.0% |
| ! | CAAATTGTTGTTGAGAGTAG+GGG | + | tig0019430:156205-156224 | Msa1373430:intron | 35.0% |
| ! | AAATTGTTGTTGAGAGTAGG+GGG | + | tig0019430:156206-156225 | Msa1373430:intron | 35.0% |
| GTTCATCAAAGCACACAAAT+TGG | + | tig0019430:156267-156286 | Msa1373430:intron | 35.0% | |
| TACAGTAACAAAACAAGGGT+AGG | - | tig0019430:156302-156321 | None:intergenic | 35.0% | |
| GTTAGAAAAAGAGAGCAAGA+GGG | - | tig0019430:156976-156995 | None:intergenic | 35.0% | |
| AGTTAGAAAAAGAGAGCAAG+AGG | - | tig0019430:156977-156996 | None:intergenic | 35.0% | |
| !! | GAAGAGTATTGAACGAGAAA+GGG | - | tig0019430:157041-157060 | None:intergenic | 35.0% |
| TCGCAAGGATAATAGAATTG+GGG | - | tig0019430:157064-157083 | None:intergenic | 35.0% | |
| GTCGCAAGGATAATAGAATT+GGG | - | tig0019430:157065-157084 | None:intergenic | 35.0% | |
| AGTCGCAAGGATAATAGAAT+TGG | - | tig0019430:157066-157085 | None:intergenic | 35.0% | |
| ! | CAATGAATTTTCACCTTCGT+CGG | - | tig0019430:157133-157152 | None:intergenic | 35.0% |
| ! | TTGATGGTCTTCTCTAATAC+TGG | + | tig0019430:157174-157193 | Msa1373430:intron | 35.0% |
| AAGAATCAGAACCAAAACTG+TGG | - | tig0019430:157224-157243 | None:intergenic | 35.0% | |
| GCACTCAACAGATAAACAAA+TGG | - | tig0019430:157262-157281 | None:intergenic | 35.0% | |
| TGCTCCAAATTCTCTAATCA+TGG | + | tig0019430:157290-157309 | Msa1373430:intron | 35.0% | |
| ATGGCCATGATTAGAGAATT+TGG | - | tig0019430:157297-157316 | None:intergenic | 35.0% | |
| !! | TGACTGGAAGTCATTTTCTA+TGG | - | tig0019430:157316-157335 | None:intergenic | 35.0% |
| GATAAGTGAGATGAAACAAG+AGG | - | tig0019430:157479-157498 | None:intergenic | 35.0% | |
| TTTAAACCCCGAGTCAATAT+GGG | + | tig0019430:157557-157576 | Msa1373430:intron | 35.0% | |
| ATACATTTCTTCCTGTGGTA+TGG | + | tig0019430:157723-157742 | Msa1373430:intron | 35.0% | |
| !! | GAGAAGGTATGCTTATTTTC+AGG | - | tig0019430:157982-158001 | None:intergenic | 35.0% |
| CATACCTTCTCTCATTCTAT+TGG | + | tig0019430:157991-158010 | Msa1373430:intron | 35.0% | |
| ! | CAGCTCATCTAAAGTGAATT+GGG | - | tig0019430:158104-158123 | None:intergenic | 35.0% |
| ! | TCAGCTCATCTAAAGTGAAT+TGG | - | tig0019430:158105-158124 | None:intergenic | 35.0% |
| TAACCCACAAAAAAAGGTGA+GGG | - | tig0019430:158180-158199 | None:intergenic | 35.0% | |
| ATAACCCACAAAAAAAGGTG+AGG | - | tig0019430:158181-158200 | None:intergenic | 35.0% | |
| TTGTGGTTCAAACTGGATTT+GGG | - | tig0019430:158408-158427 | None:intergenic | 35.0% | |
| AAATCCAGTTTGAACCACAA+GGG | + | tig0019430:158408-158427 | Msa1373430:intron | 35.0% | |
| AAACCGTAGGTTTCTATATC+TGG | - | tig0019430:158444-158463 | None:intergenic | 35.0% | |
| CATTTACCTATTCACATGTC+TGG | + | tig0019430:158671-158690 | Msa1373430:intron | 35.0% | |
| AATACACCAGACATGTGAAT+AGG | - | tig0019430:158680-158699 | None:intergenic | 35.0% | |
| GTCTGGTGTATTGCAAATTT+AGG | + | tig0019430:158688-158707 | Msa1373430:intron | 35.0% | |
| ! | ATTTCAAGCCTTTTTGCTCA+TGG | + | tig0019430:159067-159086 | Msa1373430:intron | 35.0% |
| ! | TTTCAAGCCTTTTTGCTCAT+GGG | + | tig0019430:159068-159087 | Msa1373430:intron | 35.0% |
| CTTGTCTCTATCTAATCTCA+CGG | - | tig0019430:159100-159119 | None:intergenic | 35.0% | |
| ATGTTTCTTCCCATGTAAAC+AGG | + | tig0019430:159319-159338 | Msa1373430:intron | 35.0% | |
| TGTTTCTTCCCATGTAAACA+GGG | + | tig0019430:159320-159339 | Msa1373430:intron | 35.0% | |
| TCTATAAAACGAAAACGCTG+CGG | - | tig0019430:159404-159423 | None:intergenic | 35.0% | |
| !! | TCTTTATCTCCCCGTTTTTA+TGG | + | tig0019430:159468-159487 | Msa1373430:CDS | 35.0% |
| TCAGAGATGTATGACAAGAA+TGG | + | tig0019430:159583-159602 | Msa1373430:CDS | 35.0% | |
| ! | ATGGCCTTTAAAAGCCAATA+AGG | + | tig0019430:159808-159827 | Msa1373430:three_prime_UTR | 35.0% |
| TCTAACCGATAACTGTCGTT+CGG | + | tig0019430:154249-154268 | Msa1373430:five_prime_UTR | 40.0% | |
| ATGATCACTTCTATTGGGCT+CGG | - | tig0019430:154366-154385 | None:intergenic | 40.0% | |
| !!! | AATCATCGCAATTTTGGGGT+TGG | - | tig0019430:154459-154478 | None:intergenic | 40.0% |
| AACCCCAAAATTGCGATGAT+TGG | + | tig0019430:154458-154477 | Msa1373430:exon | 40.0% | |
| ! | TGCCAATCATCGCAATTTTG+GGG | - | tig0019430:154463-154482 | None:intergenic | 40.0% |
| ! | GTGCCAATCATCGCAATTTT+GGG | - | tig0019430:154464-154483 | None:intergenic | 40.0% |
| CCAATTCCTCTTAAACATGG+TGG | - | tig0019430:154486-154505 | None:intergenic | 40.0% | |
| CCACCATGTTTAAGAGGAAT+TGG | + | tig0019430:154483-154502 | Msa1373430:CDS | 40.0% | |
| ! | ATTGACGAGTCTGGAATACA+GGG | - | tig0019430:154519-154538 | None:intergenic | 40.0% |
| ! | AATTGACGAGTCTGGAATAC+AGG | - | tig0019430:154520-154539 | None:intergenic | 40.0% |
| TGAAGAAGAAGAAGAGAAGG+TGG | - | tig0019430:154579-154598 | None:intergenic | 40.0% | |
| GAGAGATGAAGATTGGAAGA+GGG | - | tig0019430:154602-154621 | None:intergenic | 40.0% | |
| AGAGAGATGAAGATTGGAAG+AGG | - | tig0019430:154603-154622 | None:intergenic | 40.0% | |
| CAAGCAAGTATAGGAAAGCA+TGG | - | tig0019430:154931-154950 | None:intergenic | 40.0% | |
| CATGCTTTCCTATACTTGCT+TGG | + | tig0019430:154929-154948 | Msa1373430:CDS | 40.0% | |
| ATCTGCCAGCACTTTAAATC+AGG | + | tig0019430:154971-154990 | Msa1373430:CDS | 40.0% | |
| ATTAAGTTAACAGACGCGGT+TGG | - | tig0019430:155059-155078 | None:intergenic | 40.0% | |
| CGCGTCTGTTAACTTAATTC+TGG | + | tig0019430:155061-155080 | Msa1373430:intron | 40.0% | |
| GAGTGAAATATGTCTGTACG+AGG | + | tig0019430:155121-155140 | Msa1373430:intron | 40.0% | |
| TGATCACTGTGACTCATTTC+TGG | + | tig0019430:155164-155183 | Msa1373430:intron | 40.0% | |
| !! | TCATTTCTGGCTTTGTGAGT+TGG | + | tig0019430:155177-155196 | Msa1373430:intron | 40.0% |
| AAACCTTATCCCACTAAGTG+GGG | - | tig0019430:155257-155276 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | - | tig0019430:155258-155277 | None:intergenic | 40.0% | |
| GGAAAGATAGAGGAATGGAA+AGG | + | tig0019430:155311-155330 | Msa1373430:intron | 40.0% | |
| AAATAAACCATGGAAAGCGG+GGG | + | tig0019430:155517-155536 | Msa1373430:intron | 40.0% | |
| ! | TTGACTCGTTCTCCTCATTA+TGG | - | tig0019430:155691-155710 | None:intergenic | 40.0% |
| TAATGAGGAGAACGAGTCAA+AGG | + | tig0019430:155691-155710 | Msa1373430:CDS | 40.0% | |
| ATAACAGTACCTCATGCAGT+TGG | + | tig0019430:155732-155751 | Msa1373430:CDS | 40.0% | |
| !! | GCTTTATGTGCTTTGAGATG+TGG | + | tig0019430:155882-155901 | Msa1373430:intron | 40.0% |
| CAGCAGCTAACATATTAGTC+TGG | - | tig0019430:155940-155959 | None:intergenic | 40.0% | |
| CAGACTAATATGTTAGCTGC+TGG | + | tig0019430:155938-155957 | Msa1373430:intron | 40.0% | |
| GTACACAATTACCCCAAAAG+TGG | - | tig0019430:156067-156086 | None:intergenic | 40.0% | |
| CGGAACAGCTGAATTTCAAA+GGG | - | tig0019430:156182-156201 | None:intergenic | 40.0% | |
| ! | CCCAAATTGTTGTTGAGAGT+AGG | + | tig0019430:156203-156222 | Msa1373430:intron | 40.0% |
| CCCTACTCTCAACAACAATT+TGG | - | tig0019430:156207-156226 | None:intergenic | 40.0% | |
| !!! | TTTTGCTCTGGGATTACAGA+GGG | - | tig0019430:156484-156503 | None:intergenic | 40.0% |
| AGAGAAATGTCTCTTCTCTG+AGG | - | tig0019430:156510-156529 | None:intergenic | 40.0% | |
| TTTGAATTCCCCTTCTGTTG+TGG | + | tig0019430:156567-156586 | Msa1373430:intron | 40.0% | |
| GCAGTTAGGCAGTTTATTAC+AGG | - | tig0019430:156632-156651 | None:intergenic | 40.0% | |
| !! | TGTGTTGATTAGGAGCAGTT+AGG | - | tig0019430:156646-156665 | None:intergenic | 40.0% |
| AGTTACCCTATCAATACCAC+CGG | + | tig0019430:156737-156756 | Msa1373430:intron | 40.0% | |
| GTTTCTTTAACTCAGCCTTG+AGG | - | tig0019430:156801-156820 | None:intergenic | 40.0% | |
| CTTGTCAAGGTTCCAACAAT+GGG | - | tig0019430:156851-156870 | None:intergenic | 40.0% | |
| !! | ATGTGGCTTGGTTGTTTGAA+GGG | - | tig0019430:156876-156895 | None:intergenic | 40.0% |
| !! | TATGTGGCTTGGTTGTTTGA+AGG | - | tig0019430:156877-156896 | None:intergenic | 40.0% |
| AAATTCAAAGGGAATGGCTC+CGG | + | tig0019430:156928-156947 | Msa1373430:intron | 40.0% | |
| !! | GGAAGAGTATTGAACGAGAA+AGG | - | tig0019430:157042-157061 | None:intergenic | 40.0% |
| CGCAAGGATAATAGAATTGG+GGG | - | tig0019430:157063-157082 | None:intergenic | 40.0% | |
| TCAAACAAAGAAGAGTCGCA+AGG | - | tig0019430:157079-157098 | None:intergenic | 40.0% | |
| ! | ATTTTCACCTTCGTCGGAAA+AGG | - | tig0019430:157127-157146 | None:intergenic | 40.0% |
| TTAGAGAAGACCATCAACGA+TGG | - | tig0019430:157171-157190 | None:intergenic | 40.0% | |
| ! | TCTGTCATCTTCCACAGTTT+TGG | + | tig0019430:157210-157229 | Msa1373430:intron | 40.0% |
| ! | TAGAGAATTTGGAGCACAGA+TGG | - | tig0019430:157286-157305 | None:intergenic | 40.0% |
| !! | AGGATGAAAAAGCGTTGTTG+TGG | - | tig0019430:157374-157393 | None:intergenic | 40.0% |
| AGTTACCCTATCAATACCAC+CGG | + | tig0019430:156737-156756 | Msa1373430:intron | 40.0% | |
| TTCCATATCTGTTAGGCATC+CGG | - | tig0019430:157455-157474 | None:intergenic | 40.0% | |
| AAGAGGCTTCCATATCTGTT+AGG | - | tig0019430:157462-157481 | None:intergenic | 40.0% | |
| ATCTCACTTATCCGATGAAG+AGG | + | tig0019430:157487-157506 | Msa1373430:intron | 40.0% | |
| CTTTAAACCCCGAGTCAATA+TGG | + | tig0019430:157556-157575 | Msa1373430:intron | 40.0% | |
| ! | ACAGAGCAGTATGTAGGTTT+TGG | - | tig0019430:157647-157666 | None:intergenic | 40.0% |
| ATCATGACAGAGCAGTATGT+AGG | - | tig0019430:157653-157672 | None:intergenic | 40.0% | |
| ! | AATTGGAGTATCCATACCAC+AGG | - | tig0019430:157737-157756 | None:intergenic | 40.0% |
| TAGATCTTGTCCTCCACTTT+AGG | + | tig0019430:157889-157908 | Msa1373430:intron | 40.0% | |
| GTCTATATGCTGAAAGTGGA+AGG | + | tig0019430:157933-157952 | Msa1373430:intron | 40.0% | |
| ATACATGGGGAAAACAGAGT+GGG | - | tig0019430:158130-158149 | None:intergenic | 40.0% | |
| ! | ACTCTGTTTTCCCCATGTAT+GGG | + | tig0019430:158130-158149 | Msa1373430:intron | 40.0% |
| !!! | TGTCCCTCACCTTTTTTTGT+GGG | + | tig0019430:158174-158193 | Msa1373430:intron | 40.0% |
| ! | CTGGCAGATACCACATTTTA+TGG | + | tig0019430:158270-158289 | Msa1373430:CDS | 40.0% |
| TAAGCAAGGGCCATAAAATG+TGG | - | tig0019430:158283-158302 | None:intergenic | 40.0% | |
| CTCACGACACATATAAGCAA+GGG | - | tig0019430:158296-158315 | None:intergenic | 40.0% | |
| CTTGTGGTTCAAACTGGATT+TGG | - | tig0019430:158409-158428 | None:intergenic | 40.0% | |
| CAAATCCAGTTTGAACCACA+AGG | + | tig0019430:158407-158426 | Msa1373430:intron | 40.0% | |
| ! | TCTAATCCCTTTGGGTTTCT+TGG | + | tig0019430:158782-158801 | Msa1373430:CDS | 40.0% |
| CATATGCCAAGAAACCCAAA+GGG | - | tig0019430:158791-158810 | None:intergenic | 40.0% | |
| TCATATGCCAAGAAACCCAA+AGG | - | tig0019430:158792-158811 | None:intergenic | 40.0% | |
| CATGAGTCTCCAAAACATTG+TGG | - | tig0019430:159302-159321 | None:intergenic | 40.0% | |
| GTTTCTTCCCATGTAAACAG+GGG | + | tig0019430:159321-159340 | Msa1373430:intron | 40.0% | |
| TTTCTTCCCATGTAAACAGG+GGG | + | tig0019430:159322-159341 | Msa1373430:intron | 40.0% | |
| TATTGCAAGTGTAAGTGCAG+TGG | - | tig0019430:159377-159396 | None:intergenic | 40.0% | |
| ! | GTTTTATAGAGACCGCACTA+AGG | + | tig0019430:159414-159433 | Msa1373430:CDS | 40.0% |
| TAGAAGCCCAGCCATAAAAA+CGG | - | tig0019430:159482-159501 | None:intergenic | 40.0% | |
| !! | CGTTGACTTCTAAGAAGTGT+TGG | - | tig0019430:159525-159544 | None:intergenic | 40.0% |
| TTCTTAGAAGTCAACGCAGA+GGG | + | tig0019430:159529-159548 | Msa1373430:CDS | 40.0% | |
| GTAACCAAAAGATCAAAGGC+AGG | + | tig0019430:159605-159624 | Msa1373430:CDS | 40.0% | |
| AAAAGATCAAAGGCAGGCAA+GGG | + | tig0019430:159611-159630 | Msa1373430:CDS | 40.0% | |
| TATGAAGGAGCAGGCAAAAA+CGG | - | tig0019430:159682-159701 | None:intergenic | 40.0% | |
| ACTCACCGAACGACAGTTAT+CGG | - | tig0019430:154257-154276 | None:intergenic | 45.0% | |
| TTTGGGCTGCCCAGTTTATT+TGG | - | tig0019430:154321-154340 | None:intergenic | 45.0% | |
| ! | GGTGCCAATCATCGCAATTT+TGG | - | tig0019430:154465-154484 | None:intergenic | 45.0% |
| TTGGCACCACCATGTTTAAG+AGG | + | tig0019430:154477-154496 | Msa1373430:CDS | 45.0% | |
| GAAGTTGTGAAGAGACGAAG+AGG | - | tig0019430:154543-154562 | None:intergenic | 45.0% | |
| GGGTGAAGAAGAAGAAGAGA+AGG | - | tig0019430:154582-154601 | None:intergenic | 45.0% | |
| AGGAGGAGAGAGATGAAGAT+TGG | - | tig0019430:154609-154628 | None:intergenic | 45.0% | |
| ! | ATCTGGGACAGGATTTGTGT+TGG | + | tig0019430:154881-154900 | Msa1373430:CDS | 45.0% |
| ! | TCTGGGACAGGATTTGTGTT+GGG | + | tig0019430:154882-154901 | Msa1373430:CDS | 45.0% |
| CATGGTACCCAAGCAAGTAT+AGG | - | tig0019430:154940-154959 | None:intergenic | 45.0% | |
| TACTTGCTTGGGTACCATGA+TGG | + | tig0019430:154941-154960 | Msa1373430:CDS | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | - | tig0019430:155259-155278 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | + | tig0019430:155256-155275 | Msa1373430:intron | 45.0% | |
| ! | AGTGGGATAAGGTTTGGTTG+TGG | + | tig0019430:155262-155281 | Msa1373430:intron | 45.0% |
| AGATAGAGGAATGGAAAGGG+TGG | + | tig0019430:155315-155334 | Msa1373430:intron | 45.0% | |
| ! | GAGAATCCCTGACCTTGTTT+AGG | + | tig0019430:155337-155356 | Msa1373430:intron | 45.0% |
| CACTCACCTAAACAAGGTCA+GGG | - | tig0019430:155346-155365 | None:intergenic | 45.0% | |
| TCACTCACCTAAACAAGGTC+AGG | - | tig0019430:155347-155366 | None:intergenic | 45.0% | |
| ! | TGACCTTGTTTAGGTGAGTG+AGG | + | tig0019430:155346-155365 | Msa1373430:intron | 45.0% |
| ! | GACCTTGTTTAGGTGAGTGA+GGG | + | tig0019430:155347-155366 | Msa1373430:intron | 45.0% |
| ATTGGACTAAAACCCTCCAG+GGG | - | tig0019430:155491-155510 | None:intergenic | 45.0% | |
| CATTGGACTAAAACCCTCCA+GGG | - | tig0019430:155492-155511 | None:intergenic | 45.0% | |
| TCATTGGACTAAAACCCTCC+AGG | - | tig0019430:155493-155512 | None:intergenic | 45.0% | |
| !! | GGAGGGTTTTAGTCCAATGA+AGG | + | tig0019430:155493-155512 | Msa1373430:intron | 45.0% |
| ACGGGATGAATCTGCTTCAA+TGG | - | tig0019430:156007-156026 | None:intergenic | 45.0% | |
| TCATCCCGTAAATACATGGG+TGG | + | tig0019430:156018-156037 | Msa1373430:CDS | 45.0% | |
| CATCCCGTAAATACATGGGT+GGG | + | tig0019430:156019-156038 | Msa1373430:CDS | 45.0% | |
| ATCCCGTAAATACATGGGTG+GGG | + | tig0019430:156020-156039 | Msa1373430:CDS | 45.0% | |
| !!! | GGTGCTATTCCACCACTTTT+GGG | + | tig0019430:156052-156071 | Msa1373430:CDS | 45.0% |
| !! | GTGCTATTCCACCACTTTTG+GGG | + | tig0019430:156053-156072 | Msa1373430:CDS | 45.0% |
| CACAATTACCCCAAAAGTGG+TGG | - | tig0019430:156064-156083 | None:intergenic | 45.0% | |
| GCGGAACAGCTGAATTTCAA+AGG | - | tig0019430:156183-156202 | None:intergenic | 45.0% | |
| CTCTCAACAACAATTTGGGG+CGG | - | tig0019430:156202-156221 | None:intergenic | 45.0% | |
| ! | TTGTTGAGAGTAGGGGGTTT+TGG | + | tig0019430:156212-156231 | Msa1373430:intron | 45.0% |
| !!! | CTTTTGCTCTGGGATTACAG+AGG | - | tig0019430:156485-156504 | None:intergenic | 45.0% |
| CTCTCTGCCCAAAACCAATA+AGG | + | tig0019430:156528-156547 | Msa1373430:intron | 45.0% | |
| TCATTTGGCCACAACAGAAG+GGG | - | tig0019430:156578-156597 | None:intergenic | 45.0% | |
| GTCATTTGGCCACAACAGAA+GGG | - | tig0019430:156579-156598 | None:intergenic | 45.0% | |
| !! | GGTATCCGGTGGTATTGATA+GGG | - | tig0019430:156745-156764 | None:intergenic | 45.0% |
| !! | AGGTATCCGGTGGTATTGAT+AGG | - | tig0019430:156746-156765 | None:intergenic | 45.0% |
| GGTCGGTAATGTTAGGTATC+CGG | - | tig0019430:156759-156778 | None:intergenic | 45.0% | |
| TTCTAGCGGTCGGTAATGTT+AGG | - | tig0019430:156766-156785 | None:intergenic | 45.0% | |
| !!! | AAGGCTGTTTTTCTAGCGGT+CGG | - | tig0019430:156776-156795 | None:intergenic | 45.0% |
| !!! | GGACAAGGCTGTTTTTCTAG+CGG | - | tig0019430:156780-156799 | None:intergenic | 45.0% |
| ! | GAAAAACAGCCTTGTCCTCA+AGG | + | tig0019430:156783-156802 | Msa1373430:intron | 45.0% |
| TTAACTCAGCCTTGAGGACA+AGG | - | tig0019430:156795-156814 | None:intergenic | 45.0% | |
| ! | ACTTGAATTCTTTTGCCCCC+AGG | + | tig0019430:156823-156842 | Msa1373430:intron | 45.0% |
| GCTTGTCAAGGTTCCAACAA+TGG | - | tig0019430:156852-156871 | None:intergenic | 45.0% | |
| !! | TGTGGCTTGGTTGTTTGAAG+GGG | - | tig0019430:156875-156894 | None:intergenic | 45.0% |
| AAAAAGAGAGCAAGAGGGTG+GGG | - | tig0019430:156971-156990 | None:intergenic | 45.0% | |
| GAAAAAGAGAGCAAGAGGGT+GGG | - | tig0019430:156972-156991 | None:intergenic | 45.0% | |
| AGAAAAAGAGAGCAAGAGGG+TGG | - | tig0019430:156973-156992 | None:intergenic | 45.0% | |
| ! | TCAACAACCTTTTCCGACGA+AGG | + | tig0019430:157117-157136 | Msa1373430:intron | 45.0% |
| TCTTCCTTCTCCATCGTTGA+TGG | + | tig0019430:157158-157177 | Msa1373430:intron | 45.0% | |
| AAGACCATCAACGATGGAGA+AGG | - | tig0019430:157165-157184 | None:intergenic | 45.0% | |
| AATGACTTCCAGTCAGCATC+AGG | + | tig0019430:157321-157340 | Msa1373430:intron | 45.0% | |
| ATGACTTCCAGTCAGCATCA+GGG | + | tig0019430:157322-157341 | Msa1373430:intron | 45.0% | |
| ! | TGACTCGGGGTTTAAAGTAG+AGG | - | tig0019430:157553-157572 | None:intergenic | 45.0% |
| ! | TGACTCCTCCCATATTGACT+CGG | - | tig0019430:157568-157587 | None:intergenic | 45.0% |
| ! | TCTTGTCCTCCACTTTAGGA+TGG | + | tig0019430:157893-157912 | Msa1373430:intron | 45.0% |
| CATACATGGGGAAAACAGAG+TGG | - | tig0019430:158131-158150 | None:intergenic | 45.0% | |
| ! | CACTCTGTTTTCCCCATGTA+TGG | + | tig0019430:158129-158148 | Msa1373430:intron | 45.0% |
| ACATGCATGTGCCCATACAT+GGG | - | tig0019430:158144-158163 | None:intergenic | 45.0% | |
| TACATGCATGTGCCCATACA+TGG | - | tig0019430:158145-158164 | None:intergenic | 45.0% | |
| !!! | CTGTCCCTCACCTTTTTTTG+TGG | + | tig0019430:158173-158192 | Msa1373430:intron | 45.0% |
| ! | TTCCGGCTGCTTTGTATTTC+TGG | + | tig0019430:158251-158270 | Msa1373430:CDS | 45.0% |
| TGCCAGAAATACAAAGCAGC+CGG | - | tig0019430:158256-158275 | None:intergenic | 45.0% | |
| CCTCACGACACATATAAGCA+AGG | - | tig0019430:158297-158316 | None:intergenic | 45.0% | |
| CCTTGCTTATATGTGTCGTG+AGG | + | tig0019430:158294-158313 | Msa1373430:CDS | 45.0% | |
| CTGGAAATTTAGTGCCCTTG+TGG | - | tig0019430:158425-158444 | None:intergenic | 45.0% | |
| ! | GTTACACTGGTTGCTGCATT+TGG | + | tig0019430:158583-158602 | Msa1373430:intron | 45.0% |
| TACTCTCTTGCTGATCCATC+TGG | + | tig0019430:158720-158739 | Msa1373430:CDS | 45.0% | |
| ACTCTCTTGCTGATCCATCT+GGG | + | tig0019430:158721-158740 | Msa1373430:CDS | 45.0% | |
| !! | AAACAGCATTGGTGGCTATG+AGG | + | tig0019430:158748-158767 | Msa1373430:CDS | 45.0% |
| TCTATCTAATCTCACGGCCA+TGG | - | tig0019430:159094-159113 | None:intergenic | 45.0% | |
| AACGGGGAGATAAAGAAGAC+TGG | - | tig0019430:159464-159483 | None:intergenic | 45.0% | |
| !! | TATCTCCCCGTTTTTATGGC+TGG | + | tig0019430:159472-159491 | Msa1373430:CDS | 45.0% |
| !! | ATCTCCCCGTTTTTATGGCT+GGG | + | tig0019430:159473-159492 | Msa1373430:CDS | 45.0% |
| AGAAGCCCAGCCATAAAAAC+GGG | - | tig0019430:159481-159500 | None:intergenic | 45.0% | |
| !! | AGAAGTGTTGGTTATCCGTG+CGG | - | tig0019430:159513-159532 | None:intergenic | 45.0% |
| CTTCTTAGAAGTCAACGCAG+AGG | + | tig0019430:159528-159547 | Msa1373430:CDS | 45.0% | |
| ! | TTTGAAATCCCCATCCTCTG+TGG | + | tig0019430:159555-159574 | Msa1373430:CDS | 45.0% |
| TGAAGTTTCCACAGAGGATG+GGG | - | tig0019430:159566-159585 | None:intergenic | 45.0% | |
| CTGAAGTTTCCACAGAGGAT+GGG | - | tig0019430:159567-159586 | None:intergenic | 45.0% | |
| ! | TCTGAAGTTTCCACAGAGGA+TGG | - | tig0019430:159568-159587 | None:intergenic | 45.0% |
| !! | CATCTCTGAAGTTTCCACAG+AGG | - | tig0019430:159572-159591 | None:intergenic | 45.0% |
| ! | CTTGCCTGCCTTTGATCTTT+TGG | - | tig0019430:159612-159631 | None:intergenic | 45.0% |
| CAAAAGATCAAAGGCAGGCA+AGG | + | tig0019430:159610-159629 | Msa1373430:CDS | 45.0% | |
| ! | ATGGAAGCATATGCTACAGG+TGG | - | tig0019430:159649-159668 | None:intergenic | 45.0% |
| ! | GCAATGGAAGCATATGCTAC+AGG | - | tig0019430:159652-159671 | None:intergenic | 45.0% |
| ! | CAAAAACGGGAAAGGTGCAA+TGG | - | tig0019430:159668-159687 | None:intergenic | 45.0% |
| ATGAAGGAGCAGGCAAAAAC+GGG | - | tig0019430:159681-159700 | None:intergenic | 45.0% | |
| ACAATGTCGTATGAAGGAGC+AGG | - | tig0019430:159691-159710 | None:intergenic | 45.0% | |
| !!! | ATTTTAATATATAGTTATTT+AGG | - | tig0019430:156701-156720 | None:intergenic | 5.0% |
| ! | AACTGTCGTTCGGTGAGTGT+CGG | + | tig0019430:154259-154278 | Msa1373430:five_prime_UTR | 50.0% |
| ! | AGTGTCGGAGAGCAATCACT+AGG | + | tig0019430:154274-154293 | Msa1373430:five_prime_UTR | 50.0% |
| ! | CTTCTGCTTTGGTCTGAAGC+TGG | + | tig0019430:154425-154444 | Msa1373430:five_prime_UTR | 50.0% |
| CGAAGAGGAATTGACGAGTC+TGG | - | tig0019430:154528-154547 | None:intergenic | 50.0% | |
| ! | GATGAGATCGGTGGACTTAG+AGG | - | tig0019430:154639-154658 | None:intergenic | 50.0% |
| GTTTCCATAGTGACGAGCGA+GGG | - | tig0019430:154663-154682 | None:intergenic | 50.0% | |
| AGTTTCCATAGTGACGAGCG+AGG | - | tig0019430:154664-154683 | None:intergenic | 50.0% | |
| !! | GAGACGAGCTTTGGAGAGTT+CGG | - | tig0019430:154693-154712 | None:intergenic | 50.0% |
| AACTCTCCAAAGCTCGTCTC+AGG | + | tig0019430:154693-154712 | Msa1373430:CDS | 50.0% | |
| TTGCTGGTGGTTGCAACATC+TGG | + | tig0019430:154864-154883 | Msa1373430:CDS | 50.0% | |
| TGCTGGTGGTTGCAACATCT+GGG | + | tig0019430:154865-154884 | Msa1373430:CDS | 50.0% | |
| CTGGGACAGGATTTGTGTTG+GGG | + | tig0019430:154883-154902 | Msa1373430:CDS | 50.0% | |
| ACAGGATTTGTGTTGGGGAG+TGG | + | tig0019430:154888-154907 | Msa1373430:CDS | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | - | tig0019430:155245-155264 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | tig0019430:155244-155263 | Msa1373430:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | + | tig0019430:155245-155264 | Msa1373430:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | + | tig0019430:155251-155270 | Msa1373430:intron | 50.0% | |
| TGCCCTCACTCACCTAAACA+AGG | - | tig0019430:155352-155371 | None:intergenic | 50.0% | |
| AACTCAATGGGGGAGGACTT+GGG | - | tig0019430:155468-155487 | None:intergenic | 50.0% | |
| AAAGGAAGGGGAAGGGACTA+AGG | - | tig0019430:155552-155571 | None:intergenic | 50.0% | |
| GGTACTGTTATGCGTCCTGA+GGG | - | tig0019430:155723-155742 | None:intergenic | 50.0% | |
| ! | AGGTACTGTTATGCGTCCTG+AGG | - | tig0019430:155724-155743 | None:intergenic | 50.0% |
| AGTACCTCATGCAGTTGGCT+GGG | + | tig0019430:155737-155756 | Msa1373430:CDS | 50.0% | |
| CACTACCTGCGTTGCTAGTA+GGG | - | tig0019430:155790-155809 | None:intergenic | 50.0% | |
| TCACTACCTGCGTTGCTAGT+AGG | - | tig0019430:155791-155810 | None:intergenic | 50.0% | |
| TCCCGTAAATACATGGGTGG+GGG | + | tig0019430:156021-156040 | Msa1373430:CDS | 50.0% | |
| AGCCCCCACCCATGTATTTA+CGG | - | tig0019430:156026-156045 | None:intergenic | 50.0% | |
| !!! | CGGTGCTATTCCACCACTTT+TGG | + | tig0019430:156051-156070 | Msa1373430:CDS | 50.0% |
| !! | CTCTGAGGAGCTTTTGCTCT+GGG | - | tig0019430:156495-156514 | None:intergenic | 50.0% |
| !! | TCTCTGAGGAGCTTTTGCTC+TGG | - | tig0019430:156496-156515 | None:intergenic | 50.0% |
| GGTCATTTGGCCACAACAGA+AGG | - | tig0019430:156580-156599 | None:intergenic | 50.0% | |
| CGGTAATGTTAGGTATCCGG+TGG | - | tig0019430:156756-156775 | None:intergenic | 50.0% | |
| TTCCAACAATGGGATCCTGG+GGG | - | tig0019430:156841-156860 | None:intergenic | 50.0% | |
| GTTCCAACAATGGGATCCTG+GGG | - | tig0019430:156842-156861 | None:intergenic | 50.0% | |
| GGTTCCAACAATGGGATCCT+GGG | - | tig0019430:156843-156862 | None:intergenic | 50.0% | |
| AGGTTCCAACAATGGGATCC+TGG | - | tig0019430:156844-156863 | None:intergenic | 50.0% | |
| TGTTTGAAGGGGGCTTGTCA+AGG | - | tig0019430:156864-156883 | None:intergenic | 50.0% | |
| !! | GTGGCTTGGTTGTTTGAAGG+GGG | - | tig0019430:156874-156893 | None:intergenic | 50.0% |
| AAGAGAACCCTGATGCTGAC+TGG | - | tig0019430:157332-157351 | None:intergenic | 50.0% | |
| AGTCAGCATCAGGGTTCTCT+TGG | + | tig0019430:157331-157350 | Msa1373430:intron | 50.0% | |
| !! | GGCATCCGGTGGTATTGATA+GGG | - | tig0019430:157441-157460 | None:intergenic | 50.0% |
| !! | AGGCATCCGGTGGTATTGAT+AGG | - | tig0019430:157442-157461 | None:intergenic | 50.0% |
| CATATCTGTTAGGCATCCGG+TGG | - | tig0019430:157452-157471 | None:intergenic | 50.0% | |
| CACCGGATGCCTAACAGATA+TGG | + | tig0019430:157450-157469 | Msa1373430:intron | 50.0% | |
| GAGTGTGCTCTCCTCTTCAT+CGG | - | tig0019430:157501-157520 | None:intergenic | 50.0% | |
| !! | CCTTTAGCTGCCTGGCTTTT+GGG | - | tig0019430:157523-157542 | None:intergenic | 50.0% |
| CCAAAAGCCAGGCAGCTAAA+GGG | + | tig0019430:157521-157540 | Msa1373430:intron | 50.0% | |
| CAAAAGCCAGGCAGCTAAAG+GGG | + | tig0019430:157522-157541 | Msa1373430:intron | 50.0% | |
| ! | GTTTTACCCCTTTAGCTGCC+TGG | - | tig0019430:157531-157550 | None:intergenic | 50.0% |
| AAACCCCGAGTCAATATGGG+AGG | + | tig0019430:157560-157579 | Msa1373430:intron | 50.0% | |
| !! | ACTCCTCCCATATTGACTCG+GGG | - | tig0019430:157566-157585 | None:intergenic | 50.0% |
| !! | GACTCCTCCCATATTGACTC+GGG | - | tig0019430:157567-157586 | None:intergenic | 50.0% |
| CTACAGCCATCCTAAAGTGG+AGG | - | tig0019430:157902-157921 | None:intergenic | 50.0% | |
| TGGCTACAGCCATCCTAAAG+TGG | - | tig0019430:157905-157924 | None:intergenic | 50.0% | |
| AATGCGAGCTCTCACTTCAG+AGG | - | tig0019430:158025-158044 | None:intergenic | 50.0% | |
| CATGCATGTGCCCATACATG+GGG | - | tig0019430:158143-158162 | None:intergenic | 50.0% | |
| AGTGCCCTTGTGGTTCAAAC+TGG | - | tig0019430:158415-158434 | None:intergenic | 50.0% | |
| !!! | AATGCTGTTTTCCGCCCAGA+TGG | - | tig0019430:158738-158757 | None:intergenic | 50.0% |
| ATCTGGGCGGAAAACAGCAT+TGG | + | tig0019430:158737-158756 | Msa1373430:CDS | 50.0% | |
| GTCACACCCCCTGTTTACAT+GGG | - | tig0019430:159331-159350 | None:intergenic | 50.0% | |
| AGTCACACCCCCTGTTTACA+TGG | - | tig0019430:159332-159351 | None:intergenic | 50.0% | |
| ! | TAAACAGGGGGTGTGACTTC+AGG | + | tig0019430:159334-159353 | Msa1373430:intron | 50.0% |
| ACCGCACTAAGGAAAGAGCT+CGG | + | tig0019430:159425-159444 | Msa1373430:CDS | 50.0% | |
| TCCGAGCTCTTTCCTTAGTG+CGG | - | tig0019430:159429-159448 | None:intergenic | 50.0% | |
| GAAGCCCAGCCATAAAAACG+GGG | - | tig0019430:159480-159499 | None:intergenic | 50.0% | |
| GACTTAGAGGCGGAAACAGG+AGG | - | tig0019430:154626-154645 | None:intergenic | 55.0% | |
| GTGGACTTAGAGGCGGAAAC+AGG | - | tig0019430:154629-154648 | None:intergenic | 55.0% | |
| ! | GAGATCGGTGGACTTAGAGG+CGG | - | tig0019430:154636-154655 | None:intergenic | 55.0% |
| ACGAGCGAGGGAGATGAGAT+CGG | - | tig0019430:154651-154670 | None:intergenic | 55.0% | |
| ATCTCCCTCGCTCGTCACTA+TGG | + | tig0019430:154656-154675 | Msa1373430:CDS | 55.0% | |
| GGTTCACCTGAGACGAGCTT+TGG | - | tig0019430:154702-154721 | None:intergenic | 55.0% | |
| ! | GTGGTTGCAACATCTGGGAC+AGG | + | tig0019430:154870-154889 | Msa1373430:CDS | 55.0% |
| GGATTTGTGTTGGGGAGTGG+TGG | + | tig0019430:154891-154910 | Msa1373430:CDS | 55.0% | |
| GGCAGATGCAGCAACCATCA+TGG | - | tig0019430:154958-154977 | None:intergenic | 55.0% | |
| GAACTCAATGGGGGAGGACT+TGG | - | tig0019430:155469-155488 | None:intergenic | 55.0% | |
| ACCCTCCAGGGGAACTCAAT+GGG | - | tig0019430:155480-155499 | None:intergenic | 55.0% | |
| AACCCTCCAGGGGAACTCAA+TGG | - | tig0019430:155481-155500 | None:intergenic | 55.0% | |
| CAGTACCTCATGCAGTTGGC+TGG | + | tig0019430:155736-155755 | Msa1373430:CDS | 55.0% | |
| ! | CTGGGCATCCTCTGTTGGTT+TGG | + | tig0019430:155755-155774 | Msa1373430:CDS | 55.0% |
| !! | GCATCCTCTGTTGGTTTGGC+TGG | + | tig0019430:155759-155778 | Msa1373430:CDS | 55.0% |
| TGTGCCAGCCAAACCAACAG+AGG | - | tig0019430:155766-155785 | None:intergenic | 55.0% | |
| GCCCCCACCCATGTATTTAC+GGG | - | tig0019430:156025-156044 | None:intergenic | 55.0% | |
| AGAGCACACTCCCAAAAGCC+AGG | + | tig0019430:157510-157529 | Msa1373430:intron | 55.0% | |
| CCCAAAAGCCAGGCAGCTAA+AGG | + | tig0019430:157520-157539 | Msa1373430:intron | 55.0% | |
| !! | CCCTTTAGCTGCCTGGCTTT+TGG | - | tig0019430:157524-157543 | None:intergenic | 55.0% |
| !! | TTCAGATGGGCTGCAGCTTC+TGG | + | tig0019430:158202-158221 | Msa1373430:intron | 55.0% |
| GTGTCGTGAGGACTATGCTG+CGG | + | tig0019430:158306-158325 | Msa1373430:CDS | 55.0% | |
| TGTCGTGAGGACTATGCTGC+GGG | + | tig0019430:158307-158326 | Msa1373430:CDS | 55.0% | |
| CTCTTGCTGATCCATCTGGG+CGG | + | tig0019430:158724-158743 | Msa1373430:CDS | 55.0% | |
| ! | TGGGCGGAAAACAGCATTGG+TGG | + | tig0019430:158740-158759 | Msa1373430:CDS | 55.0% |
| ! | GCCTTTTTGCTCATGGGCCA+TGG | + | tig0019430:159074-159093 | Msa1373430:intron | 55.0% |
| GCCATGGCCCATGAGCAAAA+AGG | - | tig0019430:159078-159097 | None:intergenic | 55.0% | |
| GCTTCTAATTCACCGCCGCA+CGG | + | tig0019430:159495-159514 | Msa1373430:CDS | 55.0% | |
| !! | AGTGTTGGTTATCCGTGCGG+CGG | - | tig0019430:159510-159529 | None:intergenic | 55.0% |
| GGAGCAGGCAAAAACGGGAA+AGG | - | tig0019430:159676-159695 | None:intergenic | 55.0% | |
| AGCGAGGGAGATGAGATCGG+TGG | - | tig0019430:154648-154667 | None:intergenic | 60.0% | |
| CCTCCAGGGGAACTCAATGG+GGG | - | tig0019430:155478-155497 | None:intergenic | 60.0% | |
| CCCTCCAGGGGAACTCAATG+GGG | - | tig0019430:155479-155498 | None:intergenic | 60.0% | |
| CCCCATTGAGTTCCCCTGGA+GGG | + | tig0019430:155476-155495 | Msa1373430:intron | 60.0% | |
| GAGAAGTCCCCCGCTTTCCA+TGG | - | tig0019430:155527-155546 | None:intergenic | 60.0% | |
| AGTCAAAGGCCACTGCCCTC+AGG | + | tig0019430:155705-155724 | Msa1373430:CDS | 60.0% | |
| GTTATGCGTCCTGAGGGCAG+TGG | - | tig0019430:155717-155736 | None:intergenic | 60.0% | |
| GATGCCCAGCCAACTGCATG+AGG | - | tig0019430:155744-155763 | None:intergenic | 60.0% | |
| GTTGGCTGGGCATCCTCTGT+TGG | + | tig0019430:155750-155769 | Msa1373430:CDS | 60.0% | |
| CACAGCCCTACTAGCAACGC+AGG | + | tig0019430:155782-155801 | Msa1373430:CDS | 60.0% | |
| !! | TGGGCTTGCTGCTTCCAACC+TGG | + | tig0019430:155958-155977 | Msa1373430:CDS | 60.0% |
| ACATGGGTGGGGGCTGTAGT+CGG | + | tig0019430:156031-156050 | Msa1373430:CDS | 60.0% | |
| TGCCCCCAGGATCCCATTGT+TGG | + | tig0019430:156836-156855 | Msa1373430:intron | 60.0% | |
| AAAGGGAATGGCTCCGGCGA+AGG | + | tig0019430:156934-156953 | Msa1373430:intron | 60.0% | |
| AATGGCTCCGGCGAAGGTTG+TGG | + | tig0019430:156940-156959 | Msa1373430:intron | 60.0% | |
| ATGGCTCCGGCGAAGGTTGT+GGG | + | tig0019430:156941-156960 | Msa1373430:intron | 60.0% | |
| GGTCTACCCACAACCTTCGC+CGG | - | tig0019430:156950-156969 | None:intergenic | 60.0% | |
| GGATATGCGCGCACGCACAA+AGG | - | tig0019430:157626-157645 | None:intergenic | 60.0% | |
| GTGAGGACTATGCTGCGGGA+GGG | + | tig0019430:158311-158330 | Msa1373430:CDS | 60.0% | |
| ! | CAGGGGGTGTGACTTCAGGA+TGG | + | tig0019430:159338-159357 | Msa1373430:intron | 60.0% |
| CCAGGGGAACTCAATGGGGG+AGG | - | tig0019430:155475-155494 | None:intergenic | 65.0% | |
| CCTCCCCCATTGAGTTCCCC+TGG | + | tig0019430:155472-155491 | Msa1373430:intron | 65.0% | |
| CCCCCATTGAGTTCCCCTGG+AGG | + | tig0019430:155475-155494 | Msa1373430:intron | 65.0% | |
| CGTGAGGACTATGCTGCGGG+AGG | + | tig0019430:158310-158329 | Msa1373430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019430 | gene | 154220 | 159925 | 154220 | ID=Msa1373430;Name=Msa1373430 |
| tig0019430 | mRNA | 154220 | 159925 | 154220 | ID=Msa1373430-mRNA-1;Parent=Msa1373430;Name=Msa1373430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=253|1|1|1|1|1|7|211|415 |
| tig0019430 | exon | 154220 | 154714 | 154220 | ID=Msa1373430-mRNA-1:exon:3200;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 154863 | 154992 | 154863 | ID=Msa1373430-mRNA-1:exon:3201;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 155666 | 155803 | 155666 | ID=Msa1373430-mRNA-1:exon:3202;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 155941 | 156074 | 155941 | ID=Msa1373430-mRNA-1:exon:3203;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 158207 | 158332 | 158207 | ID=Msa1373430-mRNA-1:exon:3204;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 158710 | 158813 | 158710 | ID=Msa1373430-mRNA-1:exon:3205;Parent=Msa1373430-mRNA-1 |
| tig0019430 | exon | 159341 | 159925 | 159341 | ID=Msa1373430-mRNA-1:exon:3206;Parent=Msa1373430-mRNA-1 |
| tig0019430 | five_prime_UTR | 154220 | 154472 | 154220 | ID=Msa1373430-mRNA-1:five_prime_utr;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 154473 | 154714 | 154473 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 154863 | 154992 | 154863 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 155666 | 155803 | 155666 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 155941 | 156074 | 155941 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 158207 | 158332 | 158207 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 158710 | 158813 | 158710 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | CDS | 159341 | 159714 | 159341 | ID=Msa1373430-mRNA-1:cds;Parent=Msa1373430-mRNA-1 |
| tig0019430 | three_prime_UTR | 159715 | 159925 | 159715 | ID=Msa1373430-mRNA-1:three_prime_utr;Parent=Msa1373430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
