AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896300 MtrunA17_Chr6g0480851 94.203 759 39 1 7 760 1 759 0.0 1459
Msa0896300 MtrunA17_Chr6g0480781 77.075 759 154 3 7 760 1 744 0.0 1202
Msa0896300 MtrunA17_Chr6g0480671 65.762 774 239 5 7 760 1 768 0.0 990
Msa0896300 MtrunA17_Chr6g0481021 69.764 678 181 3 97 752 20 695 0.0 934
Msa0896300 MtrunA17_Chr6g0480741 63.974 755 193 7 7 755 1 682 0.0 912
Msa0896300 MtrunA17_Chr6g0480681 58.281 791 214 9 7 760 1 712 0.0 868
Msa0896300 MtrunA17_Chr5g0395411 80.952 399 49 3 7 404 1 373 0.0 645
Msa0896300 MtrunA17_Chr5g0395421 85.470 351 48 1 388 735 18 368 0.0 596
Msa0896300 MtrunA17_Chr6g0480791 78.502 307 53 2 7 312 1 295 4.00e-170 491
Msa0896300 MtrunA17_Chr3g0126541 39.404 604 325 14 173 751 55 642 3.82e-135 416
Msa0896300 MtrunA17_Chr3g0139071 39.292 593 325 13 190 761 73 651 9.90e-135 416
Msa0896300 MtrunA17_Chr2g0305771 39.280 583 315 14 190 749 43 609 1.96e-134 414
Msa0896300 MtrunA17_Chr4g0073941 39.523 587 321 11 190 757 99 670 2.45e-132 409
Msa0896300 MtrunA17_Chr4g0028861 39.506 567 314 11 190 742 124 675 5.12e-130 402
Msa0896300 MtrunA17_Chr1g0158861 37.241 580 328 14 190 751 83 644 4.86e-128 398
Msa0896300 MtrunA17_Chr2g0326871 38.475 577 326 12 190 752 77 638 6.70e-128 397
Msa0896300 MtrunA17_Chr7g0275581 37.896 599 334 14 172 751 69 648 3.25e-126 393
Msa0896300 MtrunA17_Chr7g0228181 37.306 579 327 12 190 747 44 607 8.13e-125 388
Msa0896300 MtrunA17_Chr6g0480771 70.656 259 73 1 502 760 12 267 1.42e-122 369
Msa0896300 MtrunA17_Chr4g0001481 38.609 575 315 13 190 742 101 659 3.26e-122 384
Msa0896300 MtrunA17_Chr1g0181121 37.349 581 334 11 190 756 44 608 4.56e-120 376
Msa0896300 MtrunA17_Chr3g0125651 37.177 581 325 14 190 747 36 599 5.57e-118 371
Msa0896300 MtrunA17_Chr8g0347121 34.304 618 331 12 189 750 59 657 2.95e-116 367
Msa0896300 MtrunA17_Chr8g0360821 36.348 586 331 16 189 749 61 629 6.25e-112 354
Msa0896300 MtrunA17_Chr6g0480841 80.488 205 40 0 556 760 2 206 1.92e-109 332
Msa0896300 MtrunA17_Chr7g0218341 35.424 590 346 13 190 757 109 685 8.16e-95 310
Msa0896300 MtrunA17_Chr2g0318561 35.345 464 267 8 306 749 2 452 1.62e-81 269
Msa0896300 MtrunA17_Chr6g0480751 44.518 301 81 5 7 307 1 215 5.59e-70 229
Msa0896300 MtrunA17_Chr6g0480821 60.000 185 69 1 307 486 25 209 7.70e-67 220
Msa0896300 MtrunA17_Chr6g0480761 58.170 153 56 2 322 466 13 165 6.54e-52 179
Msa0896300 MtrunA17_Chr2g0326861 35.829 187 113 3 265 445 14 199 5.07e-33 127
Msa0896300 MtrunA17_Chr6g0480831 75.342 73 17 1 471 543 1 72 1.80e-22 91.7
Msa0896300 MtrunA17_Chr2g0318551 33.333 132 77 5 183 309 53 178 9.70e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896300 AT3G17700.1 58.290 772 289 9 8 758 3 762 0.0 862
Msa0896300 AT3G17690.1 56.421 732 292 10 39 757 9 726 0.0 822
Msa0896300 AT3G17700.2 58.174 679 251 9 8 665 3 669 0.0 761
Msa0896300 AT3G17690.2 55.660 636 257 9 39 661 9 632 0.0 705
Msa0896300 AT3G17690.3 52.601 519 229 7 35 543 5 516 0.0 536
Msa0896300 AT1G19780.1 41.451 579 304 13 190 747 97 661 1.21e-135 419
Msa0896300 AT5G53130.1 39.721 574 310 11 186 742 80 634 4.78e-135 416
Msa0896300 AT2G24610.1 40.034 592 321 15 190 761 72 649 8.03e-133 411
Msa0896300 AT1G01340.1 37.990 587 330 14 189 757 62 632 9.57e-133 410
Msa0896300 AT1G01340.2 37.990 587 330 14 189 757 67 637 1.84e-132 409
Msa0896300 AT2G24610.2 39.865 592 322 14 190 761 87 664 2.82e-132 410
Msa0896300 AT4G01010.1 37.394 591 339 11 184 757 62 638 2.36e-131 406
Msa0896300 AT4G01010.2 37.394 591 339 11 184 757 62 638 2.36e-131 406
Msa0896300 AT1G15990.1 40.816 588 308 14 190 755 90 659 3.49e-131 407
Msa0896300 AT2G28260.2 39.024 574 317 12 190 747 28 584 7.36e-131 403
Msa0896300 AT2G28260.1 39.024 574 317 12 190 747 68 624 1.54e-130 403
Msa0896300 AT4G30360.1 38.593 583 324 12 190 752 71 639 2.10e-130 404
Msa0896300 AT4G30560.5 40.301 598 305 14 190 757 77 652 4.33e-129 400
Msa0896300 AT4G30560.2 40.301 598 305 14 190 757 77 652 4.33e-129 400
Msa0896300 AT4G30560.3 40.301 598 305 14 190 757 77 652 4.33e-129 400
Msa0896300 AT4G30560.1 40.301 598 305 14 190 757 103 678 9.05e-129 400
Msa0896300 AT4G30560.4 40.301 598 305 14 190 757 103 678 9.05e-129 400
Msa0896300 AT5G57940.3 39.724 579 313 11 190 747 81 644 5.37e-127 395
Msa0896300 AT5G57940.1 39.724 579 313 11 190 747 88 651 6.17e-127 395
Msa0896300 AT5G57940.2 39.724 579 313 11 190 747 88 651 6.17e-127 395
Msa0896300 AT2G23980.6 40.103 581 309 13 190 747 76 640 1.67e-126 394
Msa0896300 AT2G23980.9 40.103 581 309 13 190 747 103 667 2.93e-126 394
Msa0896300 AT2G23980.10 40.103 581 309 13 190 747 103 667 2.93e-126 394
Msa0896300 AT2G23980.1 40.103 581 309 13 190 747 103 667 2.93e-126 394
Msa0896300 AT2G23980.4 40.103 581 309 13 190 747 103 667 2.93e-126 394
Msa0896300 AT2G23980.5 40.103 581 309 13 190 747 103 667 2.93e-126 394
Msa0896300 AT2G23980.3 38.742 604 308 14 190 747 103 690 4.07e-121 382
Msa0896300 AT2G23980.2 38.742 604 308 14 190 747 103 690 4.07e-121 382
Msa0896300 AT2G23980.8 38.742 604 308 14 190 747 103 690 4.07e-121 382
Msa0896300 AT2G23980.7 38.742 604 308 14 190 747 103 690 4.07e-121 382
Msa0896300 AT5G14870.1 37.500 584 325 16 190 750 40 606 5.70e-121 379
Msa0896300 AT2G46430.1 37.604 601 318 16 190 757 72 648 4.06e-120 377
Msa0896300 AT2G46430.2 37.604 601 318 16 190 757 72 648 4.06e-120 377
Msa0896300 AT3G48010.1 36.731 618 346 17 157 749 16 613 3.13e-119 375
Msa0896300 AT5G54250.2 33.844 588 345 14 190 749 79 650 1.98e-103 333
Msa0896300 AT5G54250.1 33.844 588 345 14 190 749 79 650 1.98e-103 333
Msa0896300 AT5G54250.4 33.844 588 345 14 190 749 79 650 1.98e-103 333
Msa0896300 AT5G15410.1 36.678 578 327 10 190 741 113 677 1.51e-101 329
Msa0896300 AT5G15410.2 36.678 578 327 10 190 741 112 676 2.46e-101 328
Msa0896300 AT5G54250.3 33.731 587 342 15 190 749 79 645 3.02e-100 324
Msa0896300 AT1G19780.2 40.389 463 241 13 306 747 2 450 8.62e-95 306
Msa0896300 AT2G46450.4 31.633 588 345 14 196 756 35 592 8.99e-89 293
Msa0896300 AT2G46450.1 31.633 588 345 14 196 756 35 592 8.99e-89 293
Msa0896300 AT2G46440.1 32.943 598 339 16 196 757 35 606 2.09e-88 291
Msa0896300 AT2G46450.3 31.293 588 324 16 196 756 22 556 9.66e-81 270
Msa0896300 AT2G46450.2 31.293 588 324 16 196 756 35 569 1.03e-80 271
Msa0896300 AT2G46440.2 35.616 438 225 14 355 757 13 428 3.65e-61 213

Find 179 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCACAATTCTCTTTA+TGG 0.076169 6_1:+86109200 Msa0896300:intron
TTCTATTCCTATGGCTTCTT+TGG 0.161238 6_1:+86108562 Msa0896300:CDS
TTCTGCTCTTCAAGTATTCC+TGG 0.246531 6_1:+86109257 Msa0896300:CDS
AATATGTGTATGCACTCTTT+TGG 0.256005 6_1:+86111218 Msa0896300:CDS
TAGAATAGTGGTATGCTTAT+AGG 0.263460 6_1:+86114366 Msa0896300:three_prime_UTR
GTTTATTGTGCGTGGAAAAT+TGG 0.274539 6_1:+86113280 Msa0896300:CDS
TGAAGAATTCAAACAATCTT+TGG 0.283105 6_1:-86111125 None:intergenic
GGTTCATGCTGGTACCTCTT+TGG 0.298958 6_1:+86110405 Msa0896300:CDS
GAGTCAAGGGTTGTTGGTGC+TGG 0.301405 6_1:+86109878 Msa0896300:CDS
ATCTGGGAATATATTGTATA+AGG 0.301572 6_1:-86110266 None:intergenic
ATGTCTGTCTGGAGATCTTC+TGG 0.319596 6_1:-86112820 None:intergenic
TGAAAAGGATTTCCAGTTGC+AGG 0.328009 6_1:-86108686 None:intergenic
GCTTACCAGAAGAACTTAAA+AGG 0.333543 6_1:+86112608 Msa0896300:CDS
AAGGGGTGTTCCTGAGAAAA+TGG 0.334550 6_1:+86112783 Msa0896300:CDS
ATACAGACGACATACATTAA+AGG 0.335319 6_1:+86113215 Msa0896300:CDS
CAAAACTTTCTTCAGGCTCT+TGG 0.335864 6_1:+86112295 Msa0896300:CDS
GGACCACTCATTTGGCTAAC+AGG 0.342078 6_1:-86108650 None:intergenic
TATGGCGACGCCAAAGGATA+TGG 0.349584 6_1:+86109218 Msa0896300:CDS
AGAATAGTGGTATGCTTATA+GGG 0.352341 6_1:+86114367 Msa0896300:three_prime_UTR
ACAACAATGGAACAAGGTTT+TGG 0.354062 6_1:+86109307 Msa0896300:CDS
CCCTAGACGTAAAAGATTCT+TGG 0.355892 6_1:-86110241 None:intergenic
CTGGTACCTCTTTGGCCTAC+AGG 0.356505 6_1:+86110413 Msa0896300:CDS
AATTGCGACCAAGCAAAATA+TGG 0.356880 6_1:-86109330 None:intergenic
ATGCTATCCGGCCATGTTGT+TGG 0.360446 6_1:+86110384 Msa0896300:CDS
TTAGGTATGAATCACCTTAC+TGG 0.364609 6_1:+86114193 Msa0896300:intron
TCACGAATGGCGTCTAAGAT+AGG 0.365376 6_1:-86113185 None:intergenic
CGATGCATGGAGCCAGGATC+AGG 0.365756 6_1:+86111099 Msa0896300:CDS
TGCTTCAATTTCTATTCCTA+TGG 0.379875 6_1:+86108553 Msa0896300:CDS
TTTATCCTACCAAGTTCCTT+GGG 0.382855 6_1:+86110198 Msa0896300:CDS
CCAAGTTCCTTGGGGTCATC+AGG 0.385649 6_1:+86110207 Msa0896300:CDS
TCTGTTCTGCAGAATCTTGA+AGG 0.388750 6_1:+86108416 Msa0896300:intron
CTCTTTACAATGTCCATCAT+AGG 0.393451 6_1:+86112232 Msa0896300:CDS
AAACATACAAAACTTTCTTC+AGG 0.393913 6_1:+86112288 Msa0896300:CDS
CATATAATGGACCACTCATT+TGG 0.395482 6_1:-86108658 None:intergenic
AGTCAAGGGTTGTTGGTGCT+GGG 0.402836 6_1:+86109879 Msa0896300:CDS
ATTTATCCTACCAAGTTCCT+TGG 0.403214 6_1:+86110197 Msa0896300:CDS
CGTGGACATATTTATCATGA+TGG 0.404045 6_1:-86114477 None:intergenic
GAGGGTTAACCAATGTTTGC+GGG 0.406787 6_1:+86111018 Msa0896300:intron
TTCAGGTTGCATGGAGATAC+AGG 0.409660 6_1:+86114238 Msa0896300:CDS
TGTTCCTGAGAAAATGGTTC+TGG 0.409988 6_1:+86112789 Msa0896300:CDS
CCGGTATGTCCGACAAGATT+CGG 0.418379 6_1:-86108602 None:intergenic
CGTCGGAGAGGATGGAATTC+CGG 0.422155 6_1:+86113307 Msa0896300:CDS
TACAATGTCCATCATAGGAT+TGG 0.422433 6_1:+86112237 Msa0896300:CDS
ATTCACTACATTGAAGTCCT+TGG 0.422957 6_1:+86114341 Msa0896300:three_prime_UTR
AGGAAGTAAAATTCTCAGTC+AGG 0.426764 6_1:+86113235 Msa0896300:CDS
TTGCGGAGCCCTCGTGTTCA+AGG 0.432055 6_1:+86113637 Msa0896300:CDS
TCTCCTGAGTCAAGGGTTGT+TGG 0.433479 6_1:+86109872 Msa0896300:CDS
GTTGCAGGAGTAGCATATAA+TGG 0.434617 6_1:-86108671 None:intergenic
ACTTGCAGCAAACAGAATTC+AGG 0.434970 6_1:+86114221 Msa0896300:CDS
TAGGGTCATCCTCAGCCATA+TGG 0.436659 6_1:-86113166 None:intergenic
AATCTTTGGCACCCTGATCC+TGG 0.441247 6_1:-86111111 None:intergenic
ACTATTATATTATTCTGAAA+AGG 0.441915 6_1:-86108701 None:intergenic
GGCAGGCTGAACGGTATAGT+TGG 0.446424 6_1:+86112752 Msa0896300:CDS
GATTCATATTCGAGTCAGCC+TGG 0.449287 6_1:+86110331 Msa0896300:CDS
TCCCACTATATTTGATCCTA+AGG 0.449902 6_1:+86108892 Msa0896300:CDS
CCTGATGACCCCAAGGAACT+TGG 0.451927 6_1:-86110207 None:intergenic
TACCTTAGGATCAAATATAG+TGG 0.452744 6_1:-86108894 None:intergenic
TCAAATATAGTGGGAGCTCT+TGG 0.453330 6_1:-86108884 None:intergenic
AGATTCGGTTGTCTCTCATA+TGG 0.453776 6_1:-86108587 None:intergenic
TTATATGCTACTCCTGCAAC+TGG 0.455570 6_1:+86108674 Msa0896300:CDS
ACAATGTCCATCATAGGATT+GGG 0.458826 6_1:+86112238 Msa0896300:CDS
CAGAATAATATAATAGTGGC+AGG 0.459304 6_1:+86108707 Msa0896300:CDS
TCCCCTTCTGATAACGGAAC+CGG 0.459445 6_1:-86113326 None:intergenic
AATGAACACTTGTTAAGGTC+TGG 0.463846 6_1:+86108788 Msa0896300:CDS
TGTCGTATCGCCTCTTCCTC+AGG 0.467836 6_1:+86109970 Msa0896300:CDS
CTTATGTTTCTCCTGAGTCA+AGG 0.468126 6_1:+86109864 Msa0896300:CDS
TGGTTAAGCATCTTACTGTT+CGG 0.472124 6_1:-86113549 None:intergenic
TAGTGGCAGGAAACAAAGTA+AGG 0.472364 6_1:+86108720 Msa0896300:CDS
GCAGGCTGAACGGTATAGTT+GGG 0.472885 6_1:+86112753 Msa0896300:CDS
CCTTGTGGTACGAAGCGGAC+CGG 0.474312 6_1:-86108621 None:intergenic
CTTCTTACTCTATGTGGAGA+AGG 0.474707 6_1:+86109373 Msa0896300:CDS
CCGAATCTTGTCGGACATAC+CGG 0.475557 6_1:+86108602 Msa0896300:CDS
TTATGTTTCTCCTGAGTCAA+GGG 0.478763 6_1:+86109865 Msa0896300:CDS
TCCTTGAATCAAAATGTTCG+TGG 0.480692 6_1:-86114495 None:intergenic
AAAATAAAGCTTCACGGCCA+GGG 0.481814 6_1:+86113514 Msa0896300:CDS
TTGGAGAGCGTCGGAGAGGA+TGG 0.482934 6_1:+86113299 Msa0896300:CDS
GTCATGCAGGAGAGTGCGGC+AGG 0.485642 6_1:+86112735 Msa0896300:intron
TCTCTTGAACATTCTTCTCC+AGG 0.489405 6_1:+86109588 Msa0896300:CDS
CCACGTGTTTCTGACAGAAT+CGG 0.491947 6_1:-86108470 None:intergenic
GTAGGGCAAGTAGTACAATA+AGG 0.498528 6_1:-86108833 None:intergenic
CTAATTGGTCAGTCTCCAAC+CGG 0.500012 6_1:+86110309 Msa0896300:CDS
TATTAACAAATTTGAAGAGA+TGG 0.501093 6_1:-86112849 None:intergenic
GCCATGTTGTTGGTTCATGC+TGG 0.504222 6_1:+86110394 Msa0896300:CDS
GTATAGTTGGGCTGCAACAA+GGG 0.505727 6_1:+86112765 Msa0896300:CDS
CAAGCATCCCCTTCTGATAA+CGG 0.505912 6_1:-86113332 None:intergenic
ATTTATAATGAAATTTGCCC+AGG 0.509046 6_1:-86110349 None:intergenic
AAGATATATACCTGAGGAAG+AGG 0.513415 6_1:-86109980 None:intergenic
GAGAGACAACCGAATCTTGT+CGG 0.514587 6_1:+86108593 Msa0896300:CDS
TCATAACGATGCATGGAGCC+AGG 0.515573 6_1:+86111093 Msa0896300:CDS
GGCTGACTCGAATATGAATC+CGG 0.516192 6_1:-86110328 None:intergenic
GATGGCGTCTTATGTCTGTC+TGG 0.521052 6_1:-86112831 None:intergenic
TGAGCAACTTTGAAGTAAGT+AGG 0.522470 6_1:-86108851 None:intergenic
GTCAAGGGTTGTTGGTGCTG+GGG 0.527130 6_1:+86109880 Msa0896300:CDS
CCTCGATATGTTTCTTCGAA+AGG 0.527533 6_1:-86108522 None:intergenic
TTGTTAAGGTCTGGACAACT+AGG 0.527946 6_1:+86108797 Msa0896300:CDS
ACCCTAGTTTCTATCGTAAG+TGG 0.530830 6_1:-86111187 None:intergenic
GGTATAGTTGGGCTGCAACA+AGG 0.533253 6_1:+86112764 Msa0896300:CDS
CACGAATGGCGTCTAAGATA+GGG 0.533961 6_1:-86113184 None:intergenic
CTCGTGTTCAAGGAGTTATA+AGG 0.533997 6_1:+86113647 Msa0896300:CDS
AAACATTAGAGAAGAGCCTA+TGG 0.534416 6_1:-86114317 None:intergenic
TGTTGTACAACCTTCGCGTG+AGG 0.535852 6_1:-86109290 None:intergenic
AGAGGGTTAACCAATGTTTG+CGG 0.537367 6_1:+86111017 Msa0896300:intron
TAGAGAGTTATAAAGTAGCT+AGG 0.537563 6_1:+86114418 Msa0896300:three_prime_UTR
CAAGAGTCCCAATCCTATGA+TGG 0.538094 6_1:-86112245 None:intergenic
CAGCAAATCAGTACTCTGGC+TGG 0.539258 6_1:+86112175 Msa0896300:intron
GGGTGGTCTTGTACAGAAGA+TGG 0.547676 6_1:+86113256 Msa0896300:CDS
GGCAGGCATCCCGCAAACAT+TGG 0.547918 6_1:-86111027 None:intergenic
ACAGCGATCTGATGAACCTC+AGG 0.549584 6_1:+86108493 Msa0896300:CDS
TACTCACCTGTAGGCCAAAG+AGG 0.550263 6_1:-86110419 None:intergenic
GACTCGAATATGAATCCGGT+TGG 0.550956 6_1:-86110324 None:intergenic
GAGCAACTTTGAAGTAAGTA+GGG 0.552043 6_1:-86108850 None:intergenic
TACCACTTACGATAGAAACT+AGG 0.552629 6_1:+86111185 Msa0896300:CDS
ACCTTAGGATCAAATATAGT+GGG 0.553778 6_1:-86108893 None:intergenic
CATACCACTATTCTATTCCA+AGG 0.557542 6_1:-86114358 None:intergenic
AGTTAGATTAGTGCGATGGC+AGG 0.557613 6_1:-86111044 None:intergenic
AGGGTCATCCTCAGCCATAT+GGG 0.559056 6_1:-86113165 None:intergenic
CAAACAGAATTCAGGTTGCA+TGG 0.560432 6_1:+86114229 Msa0896300:CDS
TCCGGTTCCGTTATCAGAAG+GGG 0.560727 6_1:+86113325 Msa0896300:CDS
GGAGAGTGCGGCAGGCTGAA+CGG 0.561282 6_1:+86112743 Msa0896300:intron
AAGTCCTTGGAATAGAATAG+TGG 0.561529 6_1:+86114354 Msa0896300:three_prime_UTR
GTTGTACAACCTTCGCGTGA+GGG 0.564009 6_1:-86109289 None:intergenic
ATTCCGGTTCCGTTATCAGA+AGG 0.567052 6_1:+86113323 Msa0896300:CDS
TCTCTTTATGGCGACGCCAA+AGG 0.568223 6_1:+86109212 Msa0896300:CDS
ACTTCCCACACAAAATAGCT+TGG 0.569266 6_1:-86112208 None:intergenic
ACTTTCTTCAGGCTCTTGGA+CGG 0.572535 6_1:+86112299 Msa0896300:CDS
GGAAGTAAAATTCTCAGTCA+GGG 0.572657 6_1:+86113236 Msa0896300:CDS
ATTGTCATCATAACGATGCA+TGG 0.576364 6_1:+86111086 Msa0896300:CDS
TATGGATCCAAAGAAGCCAT+AGG 0.578785 6_1:-86108569 None:intergenic
GCACCAACAACCCTTGACTC+AGG 0.578857 6_1:-86109875 None:intergenic
GCTGCAAGTGATCTCCAGTA+AGG 0.578938 6_1:-86114207 None:intergenic
CTTCTTCAATGTCTTTAGCA+CGG 0.579605 6_1:-86113591 None:intergenic
CTGTATTAGTCTCTCACGAA+TGG 0.579807 6_1:-86113198 None:intergenic
AATACAGCAAATCAGTACTC+TGG 0.582109 6_1:+86112171 Msa0896300:intron
GTTCTTCTGGTAAGCGACGA+TGG 0.583542 6_1:-86112600 None:intergenic
ATCTGTCATGCAGGAGAGTG+CGG 0.585800 6_1:+86112731 Msa0896300:intron
ATCAAACATATTGATGCCAT+AGG 0.587948 6_1:+86114301 Msa0896300:exon
CTTCGAAAGGTAGAATCCTG+AGG 0.588558 6_1:-86108509 None:intergenic
TTCTTCAGGCTCTTGGACGG+AGG 0.589094 6_1:+86112302 Msa0896300:CDS
ATTCATATTCGAGTCAGCCT+GGG 0.590159 6_1:+86110332 Msa0896300:CDS
GCATGAACCAACAACATGGC+CGG 0.590290 6_1:-86110391 None:intergenic
GTGGTGAAGAACTTCTAAGA+TGG 0.591370 6_1:+86113354 Msa0896300:CDS
CGTCGCCATAAAGAGAATTG+TGG 0.595293 6_1:-86109205 None:intergenic
ACCACTTACGATAGAAACTA+GGG 0.602596 6_1:+86111186 Msa0896300:CDS
GATGCATGGAGCCAGGATCA+GGG 0.602954 6_1:+86111100 Msa0896300:CDS
TTCCGGTTCCGTTATCAGAA+GGG 0.604864 6_1:+86113324 Msa0896300:CDS
GCGTGAGGGTTCATAACACC+AGG 0.607336 6_1:-86109275 None:intergenic
AAGATGGTGTTTATTGTGCG+TGG 0.607353 6_1:+86113272 Msa0896300:CDS
CAAGTGTTGTTGCCATTGCG+TGG 0.607532 6_1:-86109534 None:intergenic
AGGGTAGAAATGCAACTTAG+AGG 0.611605 6_1:+86112553 Msa0896300:CDS
TATAGTTGGGCTGCAACAAG+GGG 0.617263 6_1:+86112766 Msa0896300:CDS
CTTATAACTCCTTGAACACG+AGG 0.618090 6_1:-86113646 None:intergenic
CGTGGAAAATTGGAGAGCGT+CGG 0.618147 6_1:+86113290 Msa0896300:CDS
TTCGGTCGCTAGTCAAACCC+TGG 0.621807 6_1:-86113531 None:intergenic
TATTCGAATCAACCACGCAA+TGG 0.622474 6_1:+86109522 Msa0896300:CDS
GAACAGTCTTCTGAAAGCAA+AGG 0.627118 6_1:+86113383 Msa0896300:CDS
AGTGGCAGGAAACAAAGTAA+GGG 0.630420 6_1:+86108721 Msa0896300:CDS
TTATCAGAAGGGGATGCTTG+TGG 0.631551 6_1:+86113335 Msa0896300:CDS
ATGACCCCAAGGAACTTGGT+AGG 0.631622 6_1:-86110203 None:intergenic
ATGCAGTTAGATTAGTGCGA+TGG 0.633444 6_1:-86111048 None:intergenic
CCGGTCCGCTTCGTACCACA+AGG 0.634129 6_1:+86108621 Msa0896300:CDS
TGTTATGAACCCTCACGCGA+AGG 0.636579 6_1:+86109280 Msa0896300:CDS
ACGCGAAGGTTGTACAACAA+TGG 0.638155 6_1:+86109294 Msa0896300:CDS
TTATCCTACCAAGTTCCTTG+GGG 0.643481 6_1:+86110199 Msa0896300:CDS
AGTAAGATGCTTAACCAATG+TGG 0.646548 6_1:+86113555 Msa0896300:CDS
ACCAGCATGAACCAACAACA+TGG 0.650102 6_1:-86110395 None:intergenic
ATTTGCTCCTGATGACCCCA+AGG 0.652468 6_1:-86110214 None:intergenic
GAGTGAAAATGCCTCCACAT+TGG 0.657412 6_1:-86113569 None:intergenic
GGTTGTACAACAATGGAACA+AGG 0.662884 6_1:+86109301 Msa0896300:CDS
AAGATGCTTAACCAATGTGG+AGG 0.669911 6_1:+86113558 Msa0896300:CDS
GAGGTCGTGATGTTGAGCAA+TGG 0.676062 6_1:+86112572 Msa0896300:CDS
AAAATTGGAGAGCGTCGGAG+AGG 0.681877 6_1:+86113295 Msa0896300:CDS
GGAGACTGACCAATTAGCAG+AGG 0.684915 6_1:-86110303 None:intergenic
CCGATTCTGTCAGAAACACG+TGG 0.688656 6_1:+86108470 Msa0896300:CDS
ACTCCTGTTAGCCAAATGAG+TGG 0.689485 6_1:+86108647 Msa0896300:CDS
AGTAAAATTCTCAGTCAGGG+TGG 0.692049 6_1:+86113239 Msa0896300:CDS
GAAGAAACATATCGAGGACA+CGG 0.705628 6_1:+86108528 Msa0896300:CDS
CCTTTCGAAGAAACATATCG+AGG 0.734304 6_1:+86108522 Msa0896300:CDS
ACTTACGATAGAAACTAGGG+TGG 0.738390 6_1:+86111189 Msa0896300:CDS
TTATAACTCCTTGAACACGA+GGG 0.753036 6_1:-86113645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATATTTTTAAAAAA+AGG - chr6_1:86109015-86109034 None:intergenic 0.0%
!!! TTTTATATTATTTGTAAGTA+AGG - chr6_1:86109461-86109480 None:intergenic 10.0%
!! CATTTAATATTATAAAAAAG+GGG + chr6_1:86112016-86112035 Msa0896300:intron 10.0%
!!! ACTATTATATTATTCTGAAA+AGG - chr6_1:86108704-86108723 None:intergenic 15.0%
!!! TTTTCAGAATAATATAATAG+TGG + chr6_1:86108703-86108722 Msa0896300:CDS 15.0%
!! ATATAAAAGTCTATTACTTT+AGG - chr6_1:86108928-86108947 None:intergenic 15.0%
!! ACAAGAAAATTCAAATAATT+TGG + chr6_1:86111556-86111575 Msa0896300:intron 15.0%
!! ATGTCTATTTGAAAATAATT+TGG + chr6_1:86111753-86111772 Msa0896300:intron 15.0%
!!! TTTGAAAATAATTTGGATTT+TGG + chr6_1:86111760-86111779 Msa0896300:intron 15.0%
!!! GTTTAAAATAGTAGTTAATA+AGG + chr6_1:86111838-86111857 Msa0896300:intron 15.0%
!!! AAAATCAATTTTTGTTATCA+CGG - chr6_1:86112402-86112421 None:intergenic 15.0%
!!! TATCAAGATTTTTAAATGAA+AGG - chr6_1:86112511-86112530 None:intergenic 15.0%
!!! AAATAATGGATTACTTATTA+TGG + chr6_1:86112689-86112708 Msa0896300:intron 15.0%
!!! TCAAACTTGTTTAATATAAT+TGG - chr6_1:86113079-86113098 None:intergenic 15.0%
!!! ATTTTTTGTTATTAACCCAA+CGG + chr6_1:86108145-86108164 Msa0896300:intron 20.0%
!!! ATAAAAATGAACACTTGTTA+AGG + chr6_1:86108783-86108802 Msa0896300:CDS 20.0%
!! AAACATGAAAAATGTATGAT+TGG - chr6_1:86109170-86109189 None:intergenic 20.0%
!! TAGAGTAAGAAGAAAAATAA+CGG - chr6_1:86109365-86109384 None:intergenic 20.0%
!! AAAGTAATGTAAAATGATGT+TGG - chr6_1:86109435-86109454 None:intergenic 20.0%
!! TAGAAACATTTACATTCAAA+TGG - chr6_1:86109680-86109699 None:intergenic 20.0%
!!! TGAATGTAAATGTTTCTAAT+TGG + chr6_1:86109682-86109701 Msa0896300:intron 20.0%
!!! TAATTAACAGCTATTTTCTT+GGG - chr6_1:86109920-86109939 None:intergenic 20.0%
!!! ATTCTATGTACTATTTTCTT+GGG - chr6_1:86110063-86110082 None:intergenic 20.0%
!!! AATTCTATGTACTATTTTCT+TGG - chr6_1:86110064-86110083 None:intergenic 20.0%
!! TTTAATGCTTCTGATTTATA+AGG + chr6_1:86110597-86110616 Msa0896300:intron 20.0%
!! TTAGATAAACAACTTGATAA+GGG - chr6_1:86110823-86110842 None:intergenic 20.0%
!! TTTAGATAAACAACTTGATA+AGG - chr6_1:86110824-86110843 None:intergenic 20.0%
!!! TTGAATGCTTTAAATAAGAA+TGG + chr6_1:86110908-86110927 Msa0896300:intron 20.0%
!! TTAATTCAGTAAATGAATGT+CGG + chr6_1:86110950-86110969 Msa0896300:intron 20.0%
!! ATTTGTATAATTACAACTGA+GGG - chr6_1:86111279-86111298 None:intergenic 20.0%
!! AATTTGTATAATTACAACTG+AGG - chr6_1:86111280-86111299 None:intergenic 20.0%
!! TGAAGATAAACAATGTAAAT+TGG + chr6_1:86111414-86111433 Msa0896300:intron 20.0%
!! GTATATTTGAACAAAAATTG+TGG + chr6_1:86111718-86111737 Msa0896300:intron 20.0%
!!! AAAATAATTTGGATTTTGGA+TGG + chr6_1:86111764-86111783 Msa0896300:intron 20.0%
!! ATTTCAACATTTGAAAATCA+TGG + chr6_1:86111807-86111826 Msa0896300:intron 20.0%
!! AAAATGGTATAAATGTGATT+TGG - chr6_1:86111994-86112013 None:intergenic 20.0%
!! TTTATGTTTACGTTAATTGT+TGG + chr6_1:86112344-86112363 Msa0896300:intron 20.0%
!!! GATTTTGAACAAATCATTTT+TGG + chr6_1:86112416-86112435 Msa0896300:intron 20.0%
!! TAAACAGAAGTTAATTTAGA+AGG - chr6_1:86112483-86112502 None:intergenic 20.0%
!!! ATTATTTGATAGATGTGTTT+TGG - chr6_1:86112676-86112695 None:intergenic 20.0%
!! AAAACACATCTATCAAATAA+TGG + chr6_1:86112675-86112694 Msa0896300:intron 20.0%
!! TATTAACAAATTTGAAGAGA+TGG - chr6_1:86112852-86112871 None:intergenic 20.0%
!!! TTAAGTCGATTTTATTTATC+TGG + chr6_1:86112907-86112926 Msa0896300:intron 20.0%
!! AATGCAATTGAATCATAAAA+GGG - chr6_1:86113738-86113757 None:intergenic 20.0%
!! AAATGCAATTGAATCATAAA+AGG - chr6_1:86113739-86113758 None:intergenic 20.0%
!!! TGGTTTTGATAATAGATATT+AGG - chr6_1:86114136-86114155 None:intergenic 20.0%
! GACATAAAAAGATATACAAG+TGG - chr6_1:86107987-86108006 None:intergenic 25.0%
!!! TCATTTTAAAATTGCTGAGA+TGG + chr6_1:86108367-86108386 Msa0896300:intron 25.0%
!!! AGCTTTACTTTTGTTTTCAA+TGG + chr6_1:86109066-86109085 Msa0896300:intron 25.0%
!! ATTTTTCTTCTTACTCTATG+TGG + chr6_1:86109367-86109386 Msa0896300:CDS 25.0%
! TAATGTAAAATGATGTTGGA+AGG - chr6_1:86109431-86109450 None:intergenic 25.0%
! TCTATCATTCTATCAATAGA+TGG - chr6_1:86109657-86109676 None:intergenic 25.0%
! TAAACTGCAAAAAAGGAAAT+TGG - chr6_1:86109838-86109857 None:intergenic 25.0%
!!! AATTTCCTTTTTTGCAGTTT+AGG + chr6_1:86109837-86109856 Msa0896300:intron 25.0%
!!! GTAATTAACAGCTATTTTCT+TGG - chr6_1:86109921-86109940 None:intergenic 25.0%
!! ATTCTACGTACTATTTTCTT+GGG - chr6_1:86110033-86110052 None:intergenic 25.0%
!! AATTCTACGTACTATTTTCT+TGG - chr6_1:86110034-86110053 None:intergenic 25.0%
!! AAGAAAAGGGATTTTATTCT+GGG + chr6_1:86110117-86110136 Msa0896300:intron 25.0%
! ATCTGGGAATATATTGTATA+AGG - chr6_1:86110269-86110288 None:intergenic 25.0%
! ATTTATAATGAAATTTGCCC+AGG - chr6_1:86110352-86110371 None:intergenic 25.0%
!!! CAAAATGTGAAATTTTAACG+AGG - chr6_1:86110493-86110512 None:intergenic 25.0%
!! ATCAAGTTGTTTATCTAAAC+AGG + chr6_1:86110825-86110844 Msa0896300:intron 25.0%
!! TCAAGTTGTTTATCTAAACA+GGG + chr6_1:86110826-86110845 Msa0896300:intron 25.0%
! TAATTCAGTAAATGAATGTC+GGG + chr6_1:86110951-86110970 Msa0896300:intron 25.0%
! TGAAGAATTCAAACAATCTT+TGG - chr6_1:86111128-86111147 None:intergenic 25.0%
! TTTAAGCTGTTTATCTTCAT+TGG - chr6_1:86111356-86111375 None:intergenic 25.0%
!!! TGTGTTATTTTGACACAAAA+TGG + chr6_1:86111532-86111551 Msa0896300:intron 25.0%
! TTTAACACAGTTCAAATACA+TGG + chr6_1:86111582-86111601 Msa0896300:intron 25.0%
! AAATATACATCTGAAAATCG+TGG - chr6_1:86111706-86111725 None:intergenic 25.0%
! TGCATATGAAAATTAAAACG+AGG - chr6_1:86111965-86111984 None:intergenic 25.0%
! AAACATACAAAACTTTCTTC+AGG + chr6_1:86112288-86112307 Msa0896300:CDS 25.0%
! ACTTATTATGGTACAAATGA+TGG + chr6_1:86112701-86112720 Msa0896300:intron 25.0%
!! TTTTCTCATTCAACTCTTTA+AGG - chr6_1:86112993-86113012 None:intergenic 25.0%
! GGTAAAAAAATAAAGCTTCA+CGG + chr6_1:86113508-86113527 Msa0896300:CDS 25.0%
! AGAATGTGTTTATAAGTGAT+GGG - chr6_1:86113825-86113844 None:intergenic 25.0%
!!! ACCTTATCTCTTTTTTAAGT+GGG + chr6_1:86113848-86113867 Msa0896300:intron 25.0%
! TATGACAATATGTATTCAAG+TGG - chr6_1:86114039-86114058 None:intergenic 25.0%
! ATATCTTATCTCATCCAATA+TGG + chr6_1:86114056-86114075 Msa0896300:intron 25.0%
! AATTGTTATGAGTTCCATAT+TGG - chr6_1:86114073-86114092 None:intergenic 25.0%
! AAATTATTATGTCAGAGACA+TGG - chr6_1:86114156-86114175 None:intergenic 25.0%
! ATGTCTCTGACATAATAATT+TGG + chr6_1:86114155-86114174 Msa0896300:intron 25.0%
!!! TGTTTGATAATCATTTTGTG+CGG - chr6_1:86114289-86114308 None:intergenic 25.0%
! GAAAGTGTAATTGATACGTT+TGG + chr6_1:86107926-86107945 Msa0896300:intron 30.0%
!!! ATCTTAAACCTTTTGAAGCA+TGG - chr6_1:86107959-86107978 None:intergenic 30.0%
! ATCCTGACTTGAATAATCAT+TGG - chr6_1:86108218-86108237 None:intergenic 30.0%
TAATGAGCTTCAATTAAGGA+TGG - chr6_1:86108266-86108285 None:intergenic 30.0%
TGGTTAATGAGCTTCAATTA+AGG - chr6_1:86108270-86108289 None:intergenic 30.0%
AATTCAACTCAACTTCAAAG+GGG - chr6_1:86108339-86108358 None:intergenic 30.0%
CAATTCAACTCAACTTCAAA+GGG - chr6_1:86108340-86108359 None:intergenic 30.0%
TGCTTCAATTTCTATTCCTA+TGG + chr6_1:86108553-86108572 Msa0896300:CDS 30.0%
CAGAATAATATAATAGTGGC+AGG + chr6_1:86108707-86108726 Msa0896300:CDS 30.0%
! GAGAAGTTTTCTACATTTGA+TGG + chr6_1:86108755-86108774 Msa0896300:CDS 30.0%
ACCTTAGGATCAAATATAGT+GGG - chr6_1:86108896-86108915 None:intergenic 30.0%
TACCTTAGGATCAAATATAG+TGG - chr6_1:86108897-86108916 None:intergenic 30.0%
TTTAGGAAGAAAGATACCTT+AGG - chr6_1:86108911-86108930 None:intergenic 30.0%
GCACAACTATATGACAAAAA+AGG - chr6_1:86109112-86109131 None:intergenic 30.0%
! AAGTTTTCTTCCATATCCTT+TGG - chr6_1:86109231-86109250 None:intergenic 30.0%
! TTTTCTCATTCATTTTCTGC+AGG + chr6_1:86109489-86109508 Msa0896300:intron 30.0%
! TTTCTCAGTACTCACATTTT+TGG + chr6_1:86109614-86109633 Msa0896300:intron 30.0%
! TTTTCTTCCTATAAGCAAAG+AGG - chr6_1:86109732-86109751 None:intergenic 30.0%
! CATAGGTTATTGTGTTTTCA+TGG + chr6_1:86109791-86109810 Msa0896300:intron 30.0%
! TATGTACTATTTTCTTGGGA+TGG - chr6_1:86110059-86110078 None:intergenic 30.0%
TTGACAATGTGTATTTGACA+CGG + chr6_1:86110094-86110113 Msa0896300:intron 30.0%
! GAAGAAAAGGGATTTTATTC+TGG + chr6_1:86110116-86110135 Msa0896300:intron 30.0%
! CTTCTGATTTTTATGCTATC+CGG + chr6_1:86110372-86110391 Msa0896300:CDS 30.0%
! CATTTTTATTACTCACCTGT+AGG - chr6_1:86110431-86110450 None:intergenic 30.0%
GTTCTTTGTATTTGAATGCA+AGG - chr6_1:86110529-86110548 None:intergenic 30.0%
ATTCATTATGTGAAGATGCA+GGG - chr6_1:86110551-86110570 None:intergenic 30.0%
CTGATTTATAAGGTTACATC+AGG + chr6_1:86110607-86110626 Msa0896300:intron 30.0%
TCAAATAAGTCTATCCAAAC+AGG - chr6_1:86110633-86110652 None:intergenic 30.0%
AATAGGCTCAAAACAACTTA+TGG - chr6_1:86110715-86110734 None:intergenic 30.0%
! ATTTTATCTCTTCTTCCAGA+GGG + chr6_1:86111000-86111019 Msa0896300:intron 30.0%
!!! TCATCTGATGCTTTTTCTTA+TGG + chr6_1:86111145-86111164 Msa0896300:CDS 30.0%
! AATATGTGTATGCACTCTTT+TGG + chr6_1:86111218-86111237 Msa0896300:CDS 30.0%
! ATATGTGTATGCACTCTTTT+GGG + chr6_1:86111219-86111238 Msa0896300:CDS 30.0%
TAAATTGCAAAATGCATACC+TGG - chr6_1:86111249-86111268 None:intergenic 30.0%
TATTCGCAGCTCAATATTAT+AGG - chr6_1:86111307-86111326 None:intergenic 30.0%
TAACGACACAACATAACAAA+AGG + chr6_1:86111385-86111404 Msa0896300:intron 30.0%
AACGACACAACATAACAAAA+GGG + chr6_1:86111386-86111405 Msa0896300:intron 30.0%
TCATAAGTCATAACCAGTTA+TGG + chr6_1:86111473-86111492 Msa0896300:intron 30.0%
AAACAAGGTTTAGAAGTAAG+AGG + chr6_1:86111509-86111528 Msa0896300:intron 30.0%
! GGTTAAATACGTTTTGTAGA+TGG + chr6_1:86111603-86111622 Msa0896300:intron 30.0%
CGTTAATTGTATTATGTGCA+TGG - chr6_1:86111663-86111682 None:intergenic 30.0%
TAGTAGTTAATAAGGTTGAG+TGG + chr6_1:86111846-86111865 Msa0896300:intron 30.0%
AACGAGGAAAACAATATGAT+TGG - chr6_1:86111949-86111968 None:intergenic 30.0%
TGTTGTCTAATATCATGTCA+AGG + chr6_1:86112075-86112094 Msa0896300:intron 30.0%
GTTGTCTAATATCATGTCAA+GGG + chr6_1:86112076-86112095 Msa0896300:intron 30.0%
TAACTTGAATCAACCCTAAA+AGG + chr6_1:86112100-86112119 Msa0896300:intron 30.0%
! AACCATTCATTTGCCTTTTA+GGG - chr6_1:86112116-86112135 None:intergenic 30.0%
! AAACCATTCATTTGCCTTTT+AGG - chr6_1:86112117-86112136 None:intergenic 30.0%
AAAGATCACATGCGTATAAT+TGG - chr6_1:86112151-86112170 None:intergenic 30.0%
!!! TCATACCTTTTAAGTTCTTC+TGG - chr6_1:86112616-86112635 None:intergenic 30.0%
! GAAAACTAGTTTCAAGACAA+AGG + chr6_1:86113008-86113027 Msa0896300:intron 30.0%
TGATGATCTAACATTTCTAC+AGG + chr6_1:86113130-86113149 Msa0896300:intron 30.0%
ATACAGACGACATACATTAA+AGG + chr6_1:86113215-86113234 Msa0896300:CDS 30.0%
TATTGAGACAAAAACAGAAG+GGG - chr6_1:86113699-86113718 None:intergenic 30.0%
GTATTGAGACAAAAACAGAA+GGG - chr6_1:86113700-86113719 None:intergenic 30.0%
! AGTATTGAGACAAAAACAGA+AGG - chr6_1:86113701-86113720 None:intergenic 30.0%
GTGTTCTTAACCTTATAAGA+CGG - chr6_1:86113803-86113822 None:intergenic 30.0%
GAGAATGTGTTTATAAGTGA+TGG - chr6_1:86113826-86113845 None:intergenic 30.0%
!!! GACCTTATCTCTTTTTTAAG+TGG + chr6_1:86113847-86113866 Msa0896300:intron 30.0%
TCCCACTTAAAAAAGAGATA+AGG - chr6_1:86113852-86113871 None:intergenic 30.0%
!! CTCAAATTCTAAGATGGTAT+CGG - chr6_1:86113957-86113976 None:intergenic 30.0%
! ACCATCTTAGAATTTGAGTT+AGG + chr6_1:86113959-86113978 Msa0896300:intron 30.0%
!!! AGTGTTTTAATGGTTGAGTT+AGG - chr6_1:86113985-86114004 None:intergenic 30.0%
TAACTCAACCATTAAAACAC+TGG + chr6_1:86113984-86114003 Msa0896300:intron 30.0%
ACAATATGTATTCAAGTGGT+GGG - chr6_1:86114035-86114054 None:intergenic 30.0%
GCATGTAAATAGCATACTTA+TGG - chr6_1:86114114-86114133 None:intergenic 30.0%
!! TGGTTGTTTTGTGTTATGTT+AGG + chr6_1:86114175-86114194 Msa0896300:intron 30.0%
ATCAAACATATTGATGCCAT+AGG + chr6_1:86114301-86114320 Msa0896300:exon 30.0%
TAGAATAGTGGTATGCTTAT+AGG + chr6_1:86114366-86114385 Msa0896300:three_prime_UTR 30.0%
AGAATAGTGGTATGCTTATA+GGG + chr6_1:86114367-86114386 Msa0896300:three_prime_UTR 30.0%
TAGAGAGTTATAAAGTAGCT+AGG + chr6_1:86114418-86114437 Msa0896300:three_prime_UTR 30.0%
! GTTTTCTTCCATGCTTCAAA+AGG + chr6_1:86107948-86107967 Msa0896300:intron 35.0%
ATCATTCTACATTTGACTGC+CGG + chr6_1:86108038-86108057 Msa0896300:intron 35.0%
TTATTAACCCAACGGTTCTT+AGG + chr6_1:86108153-86108172 Msa0896300:intron 35.0%
GTCCAATGATTATTCAAGTC+AGG + chr6_1:86108213-86108232 Msa0896300:intron 35.0%
ATTCAACTCAACTTCAAAGG+GGG - chr6_1:86108338-86108357 None:intergenic 35.0%
CCAATTCAACTCAACTTCAA+AGG - chr6_1:86108341-86108360 None:intergenic 35.0%
!! CCTTTGAAGTTGAGTTGAAT+TGG + chr6_1:86108338-86108357 Msa0896300:intron 35.0%
TTCTATTCCTATGGCTTCTT+TGG + chr6_1:86108562-86108581 Msa0896300:CDS 35.0%
!! CATATAATGGACCACTCATT+TGG - chr6_1:86108661-86108680 None:intergenic 35.0%
!! GTTTTCTACATTTGATGGCA+CGG + chr6_1:86108760-86108779 Msa0896300:CDS 35.0%
! AATGAACACTTGTTAAGGTC+TGG + chr6_1:86108788-86108807 Msa0896300:CDS 35.0%
!! GAGCAACTTTGAAGTAAGTA+GGG - chr6_1:86108853-86108872 None:intergenic 35.0%
!! TGAGCAACTTTGAAGTAAGT+AGG - chr6_1:86108854-86108873 None:intergenic 35.0%
TCCCACTATATTTGATCCTA+AGG + chr6_1:86108892-86108911 Msa0896300:CDS 35.0%
CAGTTCCACAATTCTCTTTA+TGG + chr6_1:86109200-86109219 Msa0896300:intron 35.0%
! ACAACAATGGAACAAGGTTT+TGG + chr6_1:86109307-86109326 Msa0896300:CDS 35.0%
AATTGCGACCAAGCAAAATA+TGG - chr6_1:86109333-86109352 None:intergenic 35.0%
CTATAAGCAAAGAGGAACTA+AGG - chr6_1:86109724-86109743 None:intergenic 35.0%
CTTAGTTCCTCTTTGCTTAT+AGG + chr6_1:86109722-86109741 Msa0896300:intron 35.0%
CGTGTCTTGAATCTTAAACA+TGG + chr6_1:86109760-86109779 Msa0896300:intron 35.0%
!!! TCCTTTTTTGCAGTTTAGGT+TGG + chr6_1:86109841-86109860 Msa0896300:intron 35.0%
TTATGTTTCTCCTGAGTCAA+GGG + chr6_1:86109865-86109884 Msa0896300:CDS 35.0%
!! TAACAGCTATTTTCTTGGGA+TGG - chr6_1:86109916-86109935 None:intergenic 35.0%
AAGATATATACCTGAGGAAG+AGG - chr6_1:86109983-86110002 None:intergenic 35.0%
GATAGGAAGATATATACCTG+AGG - chr6_1:86109989-86110008 None:intergenic 35.0%
AACAAACAACATGGAGAGAT+AGG - chr6_1:86110006-86110025 None:intergenic 35.0%
AATACACATTGTCAAGCACT+TGG - chr6_1:86110089-86110108 None:intergenic 35.0%
TGTATTTGACACGGAAGAAA+AGG + chr6_1:86110103-86110122 Msa0896300:intron 35.0%
GTATTTGACACGGAAGAAAA+GGG + chr6_1:86110104-86110123 Msa0896300:intron 35.0%
ATTTATCCTACCAAGTTCCT+TGG + chr6_1:86110197-86110216 Msa0896300:CDS 35.0%
TTTATCCTACCAAGTTCCTT+GGG + chr6_1:86110198-86110217 Msa0896300:CDS 35.0%
! CCAAGAATCTTTTACGTCTA+GGG + chr6_1:86110241-86110260 Msa0896300:CDS 35.0%
GGCAAAAATCTGAACAATCT+GGG - chr6_1:86110285-86110304 None:intergenic 35.0%
AGGCAAAAATCTGAACAATC+TGG - chr6_1:86110286-86110305 None:intergenic 35.0%
! AGATTTTTGCCTCTGCTAAT+TGG + chr6_1:86110294-86110313 Msa0896300:CDS 35.0%
CATTCATTATGTGAAGATGC+AGG - chr6_1:86110552-86110571 None:intergenic 35.0%
CTGCATCTTCACATAATGAA+TGG + chr6_1:86110550-86110569 Msa0896300:intron 35.0%
!! TATTGACTTGTGAGACTGTT+TGG + chr6_1:86110660-86110679 Msa0896300:intron 35.0%
! CATTTTATCTCTTCTTCCAG+AGG + chr6_1:86110999-86111018 Msa0896300:intron 35.0%
ATTGTCATCATAACGATGCA+TGG + chr6_1:86111086-86111105 Msa0896300:CDS 35.0%
TACCACTTACGATAGAAACT+AGG + chr6_1:86111185-86111204 Msa0896300:CDS 35.0%
ACCACTTACGATAGAAACTA+GGG + chr6_1:86111186-86111205 Msa0896300:CDS 35.0%
! TATGTGTATGCACTCTTTTG+GGG + chr6_1:86111220-86111239 Msa0896300:CDS 35.0%
AAGCTGTTTATCTTCATTGG+AGG - chr6_1:86111353-86111372 None:intergenic 35.0%
ACGACACAACATAACAAAAG+GGG + chr6_1:86111387-86111406 Msa0896300:intron 35.0%
! TACGTTTTGTAGATGGTTAG+TGG + chr6_1:86111610-86111629 Msa0896300:intron 35.0%
! GATGGTTAGTGGATATAACA+AGG + chr6_1:86111621-86111640 Msa0896300:intron 35.0%
! TGGATTTTGGATGGTTATAG+TGG + chr6_1:86111773-86111792 Msa0896300:intron 35.0%
AGTTAATAAGGTTGAGTGGA+TGG + chr6_1:86111850-86111869 Msa0896300:intron 35.0%
ATGTATGTAAGTACGTTCAG+TGG - chr6_1:86111910-86111929 None:intergenic 35.0%
AACCCTAAAAGGCAAATGAA+TGG + chr6_1:86112111-86112130 Msa0896300:intron 35.0%
AATACAGCAAATCAGTACTC+TGG + chr6_1:86112171-86112190 Msa0896300:intron 35.0%
!! AACAACCAAGCTATTTTGTG+TGG + chr6_1:86112203-86112222 Msa0896300:CDS 35.0%
!! ACAACCAAGCTATTTTGTGT+GGG + chr6_1:86112204-86112223 Msa0896300:CDS 35.0%
CTCTTTACAATGTCCATCAT+AGG + chr6_1:86112232-86112251 Msa0896300:CDS 35.0%
TACAATGTCCATCATAGGAT+TGG + chr6_1:86112237-86112256 Msa0896300:CDS 35.0%
ACAATGTCCATCATAGGATT+GGG + chr6_1:86112238-86112257 Msa0896300:CDS 35.0%
! AAGAGAATGACTTGTGTGTT+TGG - chr6_1:86112459-86112478 None:intergenic 35.0%
! ACATTTTGTTCCATCCTACT+AGG + chr6_1:86112530-86112549 Msa0896300:intron 35.0%
GCTTACCAGAAGAACTTAAA+AGG + chr6_1:86112608-86112627 Msa0896300:CDS 35.0%
! TTTTCCAGAACCATTTTCTC+AGG - chr6_1:86112796-86112815 None:intergenic 35.0%
!!! GGTTCGAATTTTTTCCCATA+TGG + chr6_1:86113151-86113170 Msa0896300:intron 35.0%
!!! AATTTTTTCCCATATGGCTG+AGG + chr6_1:86113157-86113176 Msa0896300:CDS 35.0%
AGGAAGTAAAATTCTCAGTC+AGG + chr6_1:86113235-86113254 Msa0896300:CDS 35.0%
GGAAGTAAAATTCTCAGTCA+GGG + chr6_1:86113236-86113255 Msa0896300:CDS 35.0%
GTTTATTGTGCGTGGAAAAT+TGG + chr6_1:86113280-86113299 Msa0896300:CDS 35.0%
! GATTGTGACAACTTCTTTTG+AGG - chr6_1:86113439-86113458 None:intergenic 35.0%
! CATCGATTAAACATGGTTTG+AGG - chr6_1:86113471-86113490 None:intergenic 35.0%
CAAACCATGTTTAATCGATG+TGG + chr6_1:86113471-86113490 Msa0896300:intron 35.0%
! GAAACCACATCGATTAAACA+TGG - chr6_1:86113478-86113497 None:intergenic 35.0%
TGGTTAAGCATCTTACTGTT+CGG - chr6_1:86113552-86113571 None:intergenic 35.0%
AGTAAGATGCTTAACCAATG+TGG + chr6_1:86113555-86113574 Msa0896300:CDS 35.0%
CTTCTTCAATGTCTTTAGCA+CGG - chr6_1:86113594-86113613 None:intergenic 35.0%
! CTCTTTTCGCAAGATATTTG+CGG + chr6_1:86113620-86113639 Msa0896300:CDS 35.0%
TTATAACTCCTTGAACACGA+GGG - chr6_1:86113648-86113667 None:intergenic 35.0%
TTGCATTTCAGTGTTGTGTT+TGG + chr6_1:86113751-86113770 Msa0896300:intron 35.0%
TGCATTTCAGTGTTGTGTTT+GGG + chr6_1:86113752-86113771 Msa0896300:intron 35.0%
!!! TCTCTTTTTTAAGTGGGACT+TGG + chr6_1:86113854-86113873 Msa0896300:intron 35.0%
GGCGCATGAATATAAATGAT+GGG + chr6_1:86113910-86113929 Msa0896300:intron 35.0%
! GCATGAATATAAATGATGGG+TGG + chr6_1:86113913-86113932 Msa0896300:intron 35.0%
! GCCTAACTCAAATTCTAAGA+TGG - chr6_1:86113963-86113982 None:intergenic 35.0%
!! CTATCAAGCCAGTGTTTTAA+TGG - chr6_1:86113995-86114014 None:intergenic 35.0%
!! CATTAAAACACTGGCTTGAT+AGG + chr6_1:86113993-86114012 Msa0896300:intron 35.0%
GACAATATGTATTCAAGTGG+TGG - chr6_1:86114036-86114055 None:intergenic 35.0%
TTAGGTATGAATCACCTTAC+TGG + chr6_1:86114193-86114212 Msa0896300:intron 35.0%
AAACATTAGAGAAGAGCCTA+TGG - chr6_1:86114320-86114339 None:intergenic 35.0%
ATTCACTACATTGAAGTCCT+TGG + chr6_1:86114341-86114360 Msa0896300:three_prime_UTR 35.0%
AAGTCCTTGGAATAGAATAG+TGG + chr6_1:86114354-86114373 Msa0896300:three_prime_UTR 35.0%
CATACCACTATTCTATTCCA+AGG - chr6_1:86114361-86114380 None:intergenic 35.0%
CGTGGACATATTTATCATGA+TGG - chr6_1:86114480-86114499 None:intergenic 35.0%
!!! TCCACGAACATTTTGATTCA+AGG + chr6_1:86114494-86114513 Msa0896300:three_prime_UTR 35.0%
TCCTTGAATCAAAATGTTCG+TGG - chr6_1:86114498-86114517 None:intergenic 35.0%
GATCTTTGCTCTTATCTAGC+CGG - chr6_1:86108060-86108079 None:intergenic 40.0%
GTGATGCATTGAATTCCATC+TGG + chr6_1:86108086-86108105 Msa0896300:intron 40.0%
GATTTCTCCTAAGAACCGTT+GGG - chr6_1:86108163-86108182 None:intergenic 40.0%
AACGGTTCTTAGGAGAAATC+CGG + chr6_1:86108163-86108182 Msa0896300:intron 40.0%
TTCAAGTCAGGATTTGAACC+CGG + chr6_1:86108225-86108244 Msa0896300:intron 40.0%
CAATTAAGGATGGATCGCTT+AGG - chr6_1:86108256-86108275 None:intergenic 40.0%
AACCACTTGTGCAAATCACT+TGG + chr6_1:86108285-86108304 Msa0896300:intron 40.0%
! AACCAAGTGATTTGCACAAG+TGG - chr6_1:86108290-86108309 None:intergenic 40.0%
TCTGTTCTGCAGAATCTTGA+AGG + chr6_1:86108416-86108435 Msa0896300:intron 40.0%
CCTCGATATGTTTCTTCGAA+AGG - chr6_1:86108525-86108544 None:intergenic 40.0%
CCTTTCGAAGAAACATATCG+AGG + chr6_1:86108522-86108541 Msa0896300:CDS 40.0%
GAAGAAACATATCGAGGACA+CGG + chr6_1:86108528-86108547 Msa0896300:CDS 40.0%
TATGGATCCAAAGAAGCCAT+AGG - chr6_1:86108572-86108591 None:intergenic 40.0%
! AGATTCGGTTGTCTCTCATA+TGG - chr6_1:86108590-86108609 None:intergenic 40.0%
GTTGCAGGAGTAGCATATAA+TGG - chr6_1:86108674-86108693 None:intergenic 40.0%
TTATATGCTACTCCTGCAAC+TGG + chr6_1:86108674-86108693 Msa0896300:CDS 40.0%
TGAAAAGGATTTCCAGTTGC+AGG - chr6_1:86108689-86108708 None:intergenic 40.0%
TAGTGGCAGGAAACAAAGTA+AGG + chr6_1:86108720-86108739 Msa0896300:CDS 40.0%
AGTGGCAGGAAACAAAGTAA+GGG + chr6_1:86108721-86108740 Msa0896300:CDS 40.0%
TTGTTAAGGTCTGGACAACT+AGG + chr6_1:86108797-86108816 Msa0896300:CDS 40.0%
GTAGGGCAAGTAGTACAATA+AGG - chr6_1:86108836-86108855 None:intergenic 40.0%
! TCAAATATAGTGGGAGCTCT+TGG - chr6_1:86108887-86108906 None:intergenic 40.0%
TTCTGCTCTTCAAGTATTCC+TGG + chr6_1:86109257-86109276 Msa0896300:CDS 40.0%
GGTTGTACAACAATGGAACA+AGG + chr6_1:86109301-86109320 Msa0896300:CDS 40.0%
!! GGTTTTGGCCATATTTTGCT+TGG + chr6_1:86109322-86109341 Msa0896300:CDS 40.0%
CTTCTTACTCTATGTGGAGA+AGG + chr6_1:86109373-86109392 Msa0896300:CDS 40.0%
TATTCGAATCAACCACGCAA+TGG + chr6_1:86109522-86109541 Msa0896300:CDS 40.0%
TCTCTTGAACATTCTTCTCC+AGG + chr6_1:86109588-86109607 Msa0896300:CDS 40.0%
!! GTGAGTACTGAGAAATTACC+TGG - chr6_1:86109609-86109628 None:intergenic 40.0%
GCCAACCTAAACTGCAAAAA+AGG - chr6_1:86109845-86109864 None:intergenic 40.0%
CTTATGTTTCTCCTGAGTCA+AGG + chr6_1:86109864-86109883 Msa0896300:CDS 40.0%
TTGGGTGTCAACAAACAACA+TGG - chr6_1:86110015-86110034 None:intergenic 40.0%
TTATCCTACCAAGTTCCTTG+GGG + chr6_1:86110199-86110218 Msa0896300:CDS 40.0%
! GCCAAGAATCTTTTACGTCT+AGG + chr6_1:86110240-86110259 Msa0896300:CDS 40.0%
CCCTAGACGTAAAAGATTCT+TGG - chr6_1:86110244-86110263 None:intergenic 40.0%
ATTCATATTCGAGTCAGCCT+GGG + chr6_1:86110332-86110351 Msa0896300:CDS 40.0%
! AGACTGTTTGGAACAGCTTA+TGG + chr6_1:86110672-86110691 Msa0896300:intron 40.0%
GCTGTTTGCATAAGCTATCA+TGG - chr6_1:86110750-86110769 None:intergenic 40.0%
AGAGGGTTAACCAATGTTTG+CGG + chr6_1:86111017-86111036 Msa0896300:intron 40.0%
ATGCAGTTAGATTAGTGCGA+TGG - chr6_1:86111051-86111070 None:intergenic 40.0%
ACCCTAGTTTCTATCGTAAG+TGG - chr6_1:86111190-86111209 None:intergenic 40.0%
ACTTACGATAGAAACTAGGG+TGG + chr6_1:86111189-86111208 Msa0896300:CDS 40.0%
!! CTCTCGTGCAAAAGTTGATA+TGG + chr6_1:86111445-86111464 Msa0896300:intron 40.0%
AACCAGTTATGGTTGACGAT+AGG + chr6_1:86111484-86111503 Msa0896300:intron 40.0%
TTCCTATCGTCAACCATAAC+TGG - chr6_1:86111489-86111508 None:intergenic 40.0%
GGTTGACGATAGGAAAAACA+AGG + chr6_1:86111494-86111513 Msa0896300:intron 40.0%
!! TGGATATAACAAGGTGTTGC+AGG + chr6_1:86111630-86111649 Msa0896300:intron 40.0%
ACTTCCCACACAAAATAGCT+TGG - chr6_1:86112211-86112230 None:intergenic 40.0%
!!! TTGCTTTTTGCGCTTCTCAT+TGG + chr6_1:86112265-86112284 Msa0896300:CDS 40.0%
CAAAACTTTCTTCAGGCTCT+TGG + chr6_1:86112295-86112314 Msa0896300:CDS 40.0%
! GACTTGTGTGTTTGGTTTCA+CGG - chr6_1:86112451-86112470 None:intergenic 40.0%
! TTTTGTTCCATCCTACTAGG+AGG + chr6_1:86112533-86112552 Msa0896300:intron 40.0%
TTTGTTCCATCCTACTAGGA+GGG + chr6_1:86112534-86112553 Msa0896300:intron 40.0%
AGGGTAGAAATGCAACTTAG+AGG + chr6_1:86112553-86112572 Msa0896300:CDS 40.0%
GGATACTATATCTGTCATGC+AGG + chr6_1:86112722-86112741 Msa0896300:intron 40.0%
TGTTCCTGAGAAAATGGTTC+TGG + chr6_1:86112789-86112808 Msa0896300:CDS 40.0%
! CTGTATTAGTCTCTCACGAA+TGG - chr6_1:86113201-86113220 None:intergenic 40.0%
AGTAAAATTCTCAGTCAGGG+TGG + chr6_1:86113239-86113258 Msa0896300:CDS 40.0%
AAGATGGTGTTTATTGTGCG+TGG + chr6_1:86113272-86113291 Msa0896300:CDS 40.0%
! GTGGTGAAGAACTTCTAAGA+TGG + chr6_1:86113354-86113373 Msa0896300:CDS 40.0%
! GAACAGTCTTCTGAAAGCAA+AGG + chr6_1:86113383-86113402 Msa0896300:CDS 40.0%
AAAAATAAAGCTTCACGGCC+AGG + chr6_1:86113513-86113532 Msa0896300:CDS 40.0%
AAAATAAAGCTTCACGGCCA+GGG + chr6_1:86113514-86113533 Msa0896300:CDS 40.0%
AAGATGCTTAACCAATGTGG+AGG + chr6_1:86113558-86113577 Msa0896300:CDS 40.0%
CTTATAACTCCTTGAACACG+AGG - chr6_1:86113649-86113668 None:intergenic 40.0%
CTCGTGTTCAAGGAGTTATA+AGG + chr6_1:86113647-86113666 Msa0896300:CDS 40.0%
GACAAAAACAGAAGGGGAAT+GGG - chr6_1:86113693-86113712 None:intergenic 40.0%
AGACAAAAACAGAAGGGGAA+TGG - chr6_1:86113694-86113713 None:intergenic 40.0%
TTTCAGTGTTGTGTTTGGGT+TGG + chr6_1:86113756-86113775 Msa0896300:intron 40.0%
! TTCAGTGTTGTGTTTGGGTT+GGG + chr6_1:86113757-86113776 Msa0896300:intron 40.0%
ACAATAGATTCGGGCGTATT+AGG - chr6_1:86113886-86113905 None:intergenic 40.0%
CGGCGCATGAATATAAATGA+TGG + chr6_1:86113909-86113928 Msa0896300:intron 40.0%
!! TAAAACACTGGCTTGATAGG+TGG + chr6_1:86113996-86114015 Msa0896300:intron 40.0%
!! AAAACACTGGCTTGATAGGT+GGG + chr6_1:86113997-86114016 Msa0896300:intron 40.0%
ACTTGCAGCAAACAGAATTC+AGG + chr6_1:86114221-86114240 Msa0896300:CDS 40.0%
!! CAAACAGAATTCAGGTTGCA+TGG + chr6_1:86114229-86114248 Msa0896300:CDS 40.0%
ATGCTAGTGACAAAGCCAGA+TGG - chr6_1:86108104-86108123 None:intergenic 45.0%
GGATTTCTCCTAAGAACCGT+TGG - chr6_1:86108164-86108183 None:intergenic 45.0%
ACGGTTCTTAGGAGAAATCC+GGG + chr6_1:86108164-86108183 Msa0896300:intron 45.0%
TCAAGTCAGGATTTGAACCC+GGG + chr6_1:86108226-86108245 Msa0896300:intron 45.0%
! CCACGTGTTTCTGACAGAAT+CGG - chr6_1:86108473-86108492 None:intergenic 45.0%
CTTCGAAAGGTAGAATCCTG+AGG - chr6_1:86108512-86108531 None:intergenic 45.0%
GAGAGACAACCGAATCTTGT+CGG + chr6_1:86108593-86108612 Msa0896300:CDS 45.0%
! GTTTTCCTTGTGGTACGAAG+CGG - chr6_1:86108629-86108648 None:intergenic 45.0%
! GCTAACAGGAGTTTTCCTTG+TGG - chr6_1:86108639-86108658 None:intergenic 45.0%
ACTCCTGTTAGCCAAATGAG+TGG + chr6_1:86108647-86108666 Msa0896300:CDS 45.0%
CGTCGCCATAAAGAGAATTG+TGG - chr6_1:86109208-86109227 None:intergenic 45.0%
ACGCGAAGGTTGTACAACAA+TGG + chr6_1:86109294-86109313 Msa0896300:CDS 45.0%
TAAACATGGCTGTCGAGCAT+AGG + chr6_1:86109774-86109793 Msa0896300:intron 45.0%
CTAATTGGTCAGTCTCCAAC+CGG + chr6_1:86110309-86110328 Msa0896300:CDS 45.0%
GACTCGAATATGAATCCGGT+TGG - chr6_1:86110327-86110346 None:intergenic 45.0%
!! GGCTGACTCGAATATGAATC+CGG - chr6_1:86110331-86110350 None:intergenic 45.0%
GATTCATATTCGAGTCAGCC+TGG + chr6_1:86110331-86110350 Msa0896300:CDS 45.0%
ACCAGCATGAACCAACAACA+TGG - chr6_1:86110398-86110417 None:intergenic 45.0%
AAGGTTACATCAGGCCTGTT+TGG + chr6_1:86110616-86110635 Msa0896300:intron 45.0%
! GCAAACATTGGTTAACCCTC+TGG - chr6_1:86111018-86111037 None:intergenic 45.0%
GAGGGTTAACCAATGTTTGC+GGG + chr6_1:86111018-86111037 Msa0896300:intron 45.0%
AGTTAGATTAGTGCGATGGC+AGG - chr6_1:86111047-86111066 None:intergenic 45.0%
CAAGAGTCCCAATCCTATGA+TGG - chr6_1:86112248-86112267 None:intergenic 45.0%
ACTTTCTTCAGGCTCTTGGA+CGG + chr6_1:86112299-86112318 Msa0896300:CDS 45.0%
! TGTGTGTTTGGTTTCACGGT+AGG - chr6_1:86112447-86112466 None:intergenic 45.0%
TTTCTACCCTCCTAGTAGGA+TGG - chr6_1:86112543-86112562 None:intergenic 45.0%
TGCATTTCTACCCTCCTAGT+AGG - chr6_1:86112547-86112566 None:intergenic 45.0%
GTATAGTTGGGCTGCAACAA+GGG + chr6_1:86112765-86112784 Msa0896300:CDS 45.0%
TATAGTTGGGCTGCAACAAG+GGG + chr6_1:86112766-86112785 Msa0896300:CDS 45.0%
!! AAGGGGTGTTCCTGAGAAAA+TGG + chr6_1:86112783-86112802 Msa0896300:CDS 45.0%
ATGTCTGTCTGGAGATCTTC+TGG - chr6_1:86112823-86112842 None:intergenic 45.0%
! CACGAATGGCGTCTAAGATA+GGG - chr6_1:86113187-86113206 None:intergenic 45.0%
! TCACGAATGGCGTCTAAGAT+AGG - chr6_1:86113188-86113207 None:intergenic 45.0%
ATTCCGGTTCCGTTATCAGA+AGG + chr6_1:86113323-86113342 Msa0896300:CDS 45.0%
TTCCGGTTCCGTTATCAGAA+GGG + chr6_1:86113324-86113343 Msa0896300:CDS 45.0%
CAAGCATCCCCTTCTGATAA+CGG - chr6_1:86113335-86113354 None:intergenic 45.0%
TTATCAGAAGGGGATGCTTG+TGG + chr6_1:86113335-86113354 Msa0896300:CDS 45.0%
GATGTGGTTTCTCTTGCAGA+AGG + chr6_1:86113487-86113506 Msa0896300:intron 45.0%
GAGTGAAAATGCCTCCACAT+TGG - chr6_1:86113572-86113591 None:intergenic 45.0%
AAAACAGAAGGGGAATGGGA+TGG - chr6_1:86113689-86113708 None:intergenic 45.0%
CCTTATAAGACGGCTCTGTA+GGG - chr6_1:86113793-86113812 None:intergenic 45.0%
ACCTTATAAGACGGCTCTGT+AGG - chr6_1:86113794-86113813 None:intergenic 45.0%
ACGCCCGAATCTATTGTACT+CGG + chr6_1:86113889-86113908 Msa0896300:intron 45.0%
TGCGCCGAGTACAATAGATT+CGG - chr6_1:86113896-86113915 None:intergenic 45.0%
GATGGGTGGTTCAAGTCAAT+AGG + chr6_1:86113927-86113946 Msa0896300:intron 45.0%
!! TTCAGGTTGCATGGAGATAC+AGG + chr6_1:86114238-86114257 Msa0896300:CDS 45.0%
!! TATAATATTAAATGTTAAAA+TGG - chr6_1:86112010-86112029 None:intergenic 5.0%
!! AACATTTAATATTATAAAAA+AGG + chr6_1:86112014-86112033 Msa0896300:intron 5.0%
!! ACATTTAATATTATAAAAAA+GGG + chr6_1:86112015-86112034 Msa0896300:intron 5.0%
!!! AATTTTATTTAAAACATTAT+AGG - chr6_1:86112963-86112982 None:intergenic 5.0%
CGGTTCTTAGGAGAAATCCG+GGG + chr6_1:86108165-86108184 Msa0896300:intron 50.0%
GGAGAAATCCGGGGTTTGAT+CGG + chr6_1:86108174-86108193 Msa0896300:intron 50.0%
GAGAAATCCGGGGTTTGATC+GGG + chr6_1:86108175-86108194 Msa0896300:intron 50.0%
CTTATCTCCCGATCAAACCC+CGG - chr6_1:86108185-86108204 None:intergenic 50.0%
ATGGATCGCTTAGGAGAACC+CGG - chr6_1:86108247-86108266 None:intergenic 50.0%
CCGATTCTGTCAGAAACACG+TGG + chr6_1:86108470-86108489 Msa0896300:CDS 50.0%
ACAGCGATCTGATGAACCTC+AGG + chr6_1:86108493-86108512 Msa0896300:CDS 50.0%
CCGGTATGTCCGACAAGATT+CGG - chr6_1:86108605-86108624 None:intergenic 50.0%
CCGAATCTTGTCGGACATAC+CGG + chr6_1:86108602-86108621 Msa0896300:CDS 50.0%
GGACCACTCATTTGGCTAAC+AGG - chr6_1:86108653-86108672 None:intergenic 50.0%
TCTCTTTATGGCGACGCCAA+AGG + chr6_1:86109212-86109231 Msa0896300:CDS 50.0%
TATGGCGACGCCAAAGGATA+TGG + chr6_1:86109218-86109237 Msa0896300:CDS 50.0%
TGTTATGAACCCTCACGCGA+AGG + chr6_1:86109280-86109299 Msa0896300:CDS 50.0%
GTTGTACAACCTTCGCGTGA+GGG - chr6_1:86109292-86109311 None:intergenic 50.0%
TGTTGTACAACCTTCGCGTG+AGG - chr6_1:86109293-86109312 None:intergenic 50.0%
! CAAGTGTTGTTGCCATTGCG+TGG - chr6_1:86109537-86109556 None:intergenic 50.0%
TCTCCTGAGTCAAGGGTTGT+TGG + chr6_1:86109872-86109891 Msa0896300:CDS 50.0%
! AGTCAAGGGTTGTTGGTGCT+GGG + chr6_1:86109879-86109898 Msa0896300:CDS 50.0%
ATGACCCCAAGGAACTTGGT+AGG - chr6_1:86110206-86110225 None:intergenic 50.0%
ATTTGCTCCTGATGACCCCA+AGG - chr6_1:86110217-86110236 None:intergenic 50.0%
GGAGACTGACCAATTAGCAG+AGG - chr6_1:86110306-86110325 None:intergenic 50.0%
ATGCTATCCGGCCATGTTGT+TGG + chr6_1:86110384-86110403 Msa0896300:CDS 50.0%
GCATGAACCAACAACATGGC+CGG - chr6_1:86110394-86110413 None:intergenic 50.0%
!! GCCATGTTGTTGGTTCATGC+TGG + chr6_1:86110394-86110413 Msa0896300:CDS 50.0%
GGTTCATGCTGGTACCTCTT+TGG + chr6_1:86110405-86110424 Msa0896300:CDS 50.0%
TACTCACCTGTAGGCCAAAG+AGG - chr6_1:86110422-86110441 None:intergenic 50.0%
AGCTATCATGGAGAGCTCGT+GGG - chr6_1:86110738-86110757 None:intergenic 50.0%
AAGCTATCATGGAGAGCTCG+TGG - chr6_1:86110739-86110758 None:intergenic 50.0%
TCATAACGATGCATGGAGCC+AGG + chr6_1:86111093-86111112 Msa0896300:CDS 50.0%
AATCTTTGGCACCCTGATCC+TGG - chr6_1:86111114-86111133 None:intergenic 50.0%
!! TGCACTCTTTTGGGGATTCC+AGG + chr6_1:86111228-86111247 Msa0896300:CDS 50.0%
CAGCAAATCAGTACTCTGGC+TGG + chr6_1:86112175-86112194 Msa0896300:intron 50.0%
GAGGTCGTGATGTTGAGCAA+TGG + chr6_1:86112572-86112591 Msa0896300:CDS 50.0%
GTTCTTCTGGTAAGCGACGA+TGG - chr6_1:86112603-86112622 None:intergenic 50.0%
ATCTGTCATGCAGGAGAGTG+CGG + chr6_1:86112731-86112750 Msa0896300:intron 50.0%
GCAGGCTGAACGGTATAGTT+GGG + chr6_1:86112753-86112772 Msa0896300:CDS 50.0%
GGTATAGTTGGGCTGCAACA+AGG + chr6_1:86112764-86112783 Msa0896300:CDS 50.0%
GATGGCGTCTTATGTCTGTC+TGG - chr6_1:86112834-86112853 None:intergenic 50.0%
AGGGTCATCCTCAGCCATAT+GGG - chr6_1:86113168-86113187 None:intergenic 50.0%
TAGGGTCATCCTCAGCCATA+TGG - chr6_1:86113169-86113188 None:intergenic 50.0%
!! GGGTGGTCTTGTACAGAAGA+TGG + chr6_1:86113256-86113275 Msa0896300:CDS 50.0%
! CGTGGAAAATTGGAGAGCGT+CGG + chr6_1:86113290-86113309 Msa0896300:CDS 50.0%
!! AAAATTGGAGAGCGTCGGAG+AGG + chr6_1:86113295-86113314 Msa0896300:CDS 50.0%
TCCGGTTCCGTTATCAGAAG+GGG + chr6_1:86113325-86113344 Msa0896300:CDS 50.0%
!! TCCCCTTCTGATAACGGAAC+CGG - chr6_1:86113329-86113348 None:intergenic 50.0%
CCCTACAGAGCCGTCTTATA+AGG + chr6_1:86113790-86113809 Msa0896300:intron 50.0%
GCGCCGAGTACAATAGATTC+GGG - chr6_1:86113895-86113914 None:intergenic 50.0%
GCTGCAAGTGATCTCCAGTA+AGG - chr6_1:86114210-86114229 None:intergenic 50.0%
TGGATCGCTTAGGAGAACCC+GGG - chr6_1:86108246-86108265 None:intergenic 55.0%
GCGTGAGGGTTCATAACACC+AGG - chr6_1:86109278-86109297 None:intergenic 55.0%
GCACCAACAACCCTTGACTC+AGG - chr6_1:86109878-86109897 None:intergenic 55.0%
GAGTCAAGGGTTGTTGGTGC+TGG + chr6_1:86109878-86109897 Msa0896300:CDS 55.0%
!! GTCAAGGGTTGTTGGTGCTG+GGG + chr6_1:86109880-86109899 Msa0896300:CDS 55.0%
TGTCGTATCGCCTCTTCCTC+AGG + chr6_1:86109970-86109989 Msa0896300:CDS 55.0%
CCTGATGACCCCAAGGAACT+TGG - chr6_1:86110210-86110229 None:intergenic 55.0%
CCAAGTTCCTTGGGGTCATC+AGG + chr6_1:86110207-86110226 Msa0896300:CDS 55.0%
CTGGTACCTCTTTGGCCTAC+AGG + chr6_1:86110413-86110432 Msa0896300:CDS 55.0%
CATGGAGAGCTCGTGGGAAT+AGG - chr6_1:86110732-86110751 None:intergenic 55.0%
GATGCATGGAGCCAGGATCA+GGG + chr6_1:86111100-86111119 Msa0896300:CDS 55.0%
TTCTTCAGGCTCTTGGACGG+AGG + chr6_1:86112302-86112321 Msa0896300:CDS 55.0%
GGCAGGCTGAACGGTATAGT+TGG + chr6_1:86112752-86112771 Msa0896300:CDS 55.0%
CGTCGGAGAGGATGGAATTC+CGG + chr6_1:86113307-86113326 Msa0896300:CDS 55.0%
TTCGGTCGCTAGTCAAACCC+TGG - chr6_1:86113534-86113553 None:intergenic 55.0%
CCTTGTGGTACGAAGCGGAC+CGG - chr6_1:86108624-86108643 None:intergenic 60.0%
GGCAGGCATCCCGCAAACAT+TGG - chr6_1:86111030-86111049 None:intergenic 60.0%
CGATGCATGGAGCCAGGATC+AGG + chr6_1:86111099-86111118 Msa0896300:CDS 60.0%
TCTTGGACGGAGGTAGAGCG+TGG + chr6_1:86112312-86112331 Msa0896300:intron 60.0%
!! TTGGAGAGCGTCGGAGAGGA+TGG + chr6_1:86113299-86113318 Msa0896300:CDS 60.0%
TTGCGGAGCCCTCGTGTTCA+AGG + chr6_1:86113637-86113656 Msa0896300:CDS 60.0%
CCGGTCCGCTTCGTACCACA+AGG + chr6_1:86108621-86108640 Msa0896300:CDS 65.0%
! GTCATGCAGGAGAGTGCGGC+AGG + chr6_1:86112735-86112754 Msa0896300:intron 65.0%
! GGAGAGTGCGGCAGGCTGAA+CGG + chr6_1:86112743-86112762 Msa0896300:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 86107907 86114530 86107907 ID=Msa0896300;Name=Msa0896300
chr6_1 mRNA 86107907 86114530 86107907 ID=Msa0896300-mRNA-1;Parent=Msa0896300;Name=Msa0896300-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.91|0.92|0.92|1|1|13|216|761
chr6_1 exon 86107907 86107909 86107907 ID=Msa0896300-mRNA-1:exon:14543;Parent=Msa0896300-mRNA-1
chr6_1 exon 86108428 86108913 86108428 ID=Msa0896300-mRNA-1:exon:14544;Parent=Msa0896300-mRNA-1
chr6_1 exon 86109203 86109394 86109203 ID=Msa0896300-mRNA-1:exon:14545;Parent=Msa0896300-mRNA-1
chr6_1 exon 86109511 86109609 86109511 ID=Msa0896300-mRNA-1:exon:14546;Parent=Msa0896300-mRNA-1
chr6_1 exon 86109854 86109991 86109854 ID=Msa0896300-mRNA-1:exon:14547;Parent=Msa0896300-mRNA-1
chr6_1 exon 86110186 86110434 86110186 ID=Msa0896300-mRNA-1:exon:14548;Parent=Msa0896300-mRNA-1
chr6_1 exon 86111019 86111249 86111019 ID=Msa0896300-mRNA-1:exon:14549;Parent=Msa0896300-mRNA-1
chr6_1 exon 86112178 86112323 86112178 ID=Msa0896300-mRNA-1:exon:14550;Parent=Msa0896300-mRNA-1
chr6_1 exon 86112552 86112629 86112552 ID=Msa0896300-mRNA-1:exon:14551;Parent=Msa0896300-mRNA-1
chr6_1 exon 86112744 86112873 86112744 ID=Msa0896300-mRNA-1:exon:14552;Parent=Msa0896300-mRNA-1
chr6_1 exon 86113152 86113404 86113152 ID=Msa0896300-mRNA-1:exon:14553;Parent=Msa0896300-mRNA-1
chr6_1 exon 86113506 86113668 86113506 ID=Msa0896300-mRNA-1:exon:14554;Parent=Msa0896300-mRNA-1
chr6_1 exon 86114197 86114530 86114197 ID=Msa0896300-mRNA-1:exon:14555;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86107907 86107909 86107907 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86108428 86108913 86108428 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86109203 86109394 86109203 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86109511 86109609 86109511 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86109854 86109991 86109854 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86110186 86110434 86110186 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86111019 86111249 86111019 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86112178 86112323 86112178 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86112552 86112629 86112552 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86112744 86112873 86112744 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86113152 86113404 86113152 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86113506 86113668 86113506 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 CDS 86114197 86114314 86114197 ID=Msa0896300-mRNA-1:cds;Parent=Msa0896300-mRNA-1
chr6_1 three_prime_UTR 86114315 86114530 86114315 ID=Msa0896300-mRNA-1:three_prime_utr;Parent=Msa0896300-mRNA-1
Gene Sequence

>Msa0896300

ATGAATCTTGAAGGAAACATGAATCATTTTGATAAAGATGAAATTCCGATTCTGTCAGAAACACGTGGACAGCGATCTGATGAACCTCAGGATTCTACCTTTCGAAGAAACATATCGAGGACACGGAGTGCTTCAATTTCTATTCCTATGGCTTCTTTGGATCCATATGAGAGACAACCGAATCTTGTCGGACATACCGGTCCGCTTCGTACCACAAGGAAAACTCCTGTTAGCCAAATGAGTGGTCCATTATATGCTACTCCTGCAACTGGAAATCCTTTTCAGAATAATATAATAGTGGCAGGAAACAAAGTAAGGGAGAACAAGACAGAGAAGTTTTCTACATTTGATGGCACGGATAAAAATGAACACTTGTTAAGGTCTGGACAACTAGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAAAGTTGCTCAGCAAAGAAAACCAAGAGCTCCCACTATATTTGATCCTAAGTTCCACAATTCTCTTTATGGCGACGCCAAAGGATATGGAAGAAAACTTTTTTCTTTCTGCTCTTCAAGTATTCCTGGTGTTATGAACCCTCACGCGAAGGTTGTACAACAATGGAACAAGGTTTTGGCCATATTTTGCTTGGTCGCAATTTTTGTTGATCCGTTATTTTTCTTCTTACTCTATGTGGAGAAGGAAAATAAATGTATTCGAATCAACCACGCAATGGCAACAACACTTGTTGTACTTAGAAGCATAACTGATGTTGTGTATCTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCAAGGGTTGTTGGTGCTGGGGATTTAGTTGACCATCCCAAGAAAATAGCTGTTAATTACTTTAAGAGCTACTTTCTCTTCGACTTATTTGTCGTATCGCCTCTTCCTCAGATAATGATAATATTTATCCTACCAAGTTCCTTGGGGTCATCAGGAGCAAATTATGCCAAGAATCTTTTACGTCTAGGGATCCTTATACAATATATTCCCAGATTGTTCAGATTTTTGCCTCTGCTAATTGGTCAGTCTCCAACCGGATTCATATTCGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTGATTTTTATGCTATCCGGCCATGTTGTTGGTTCATGCTGGTACCTCTTTGGCCTACAGAGGGTTAACCAATGTTTGCGGGATGCCTGCCATCGCACTAATCTAACTGCATGCATGAAATTGATTGATTGTCATCATAACGATGCATGGAGCCAGGATCAGGGTGCCAAAGATTGTTTGAATTCTTCATCTGATGCTTTTTCTTATGGAATTTATAACGCTGCTGTACCACTTACGATAGAAACTAGGGTGGTCAACAAATATGTGTATGCACTCTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAACAACCAAGCTATTTTGTGTGGGAAGTTCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGGACGGAGGAGGGTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAACCATCGTCGCTTACCAGAAGAACTTAAAAGGAGAGTGCGGCAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGTGTTCCTGAGAAAATGGTTCTGGAAAATTTGCCAGAAGATCTCCAGACAGACATAAGACGCCATCTCTTCAAATTTGTTAATAAAGTTCGAATTTTTTCCCATATGGCTGAGGATGACCCTATCTTAGACGCCATTCGTGAGAGACTAATACAGACGACATACATTAAAGGAAGTAAAATTCTCAGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTATTGTGCGTGGAAAATTGGAGAGCGTCGGAGAGGATGGAATTCCGGTTCCGTTATCAGAAGGGGATGCTTGTGGTGAAGAACTTCTAAGATGGTATCTTGAACAGTCTTCTGAAAGCAAAGAAGGTAAAAAAATAAAGCTTCACGGCCAGGGTTTGACTAGCGACCGAACAGTAAGATGCTTAACCAATGTGGAGGCATTTTCACTCCGTGCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGATATTTGCGGAGCCCTCGTGTTCAAGGAGTTATAAGGTATGAATCACCTTACTGGAGATCACTTGCAGCAAACAGAATTCAGGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGAGCTAATACCGCACAAAATGATTATCAAACATATTGA
Protein sequence

>Msa0896300

MNLEGNMNHFDKDEIPILSETRGQRSDEPQDSTFRRNISRTRSASISIPMASLDPYERQPNLVGHTGPLRTTRKTPVSQMSGPLYATPATGNPFQNNIIVAGNKVRENKTEKFSTFDGTDKNEHLLRSGQLGMCNDPYCTTCPTYFKVAQQRKPRAPTIFDPKFHNSLYGDAKGYGRKLFSFCSSSIPGVMNPHAKVVQQWNKVLAIFCLVAIFVDPLFFFLLYVEKENKCIRINHAMATTLVVLRSITDVVYLLNILLQFRLAYVSPESRVVGAGDLVDHPKKIAVNYFKSYFLFDLFVVSPLPQIMIIFILPSSLGSSGANYAKNLLRLGILIQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHRTNLTACMKLIDCHHNDAWSQDQGAKDCLNSSSDAFSYGIYNAAVPLTIETRVVNKYVYALFWGFQQISTLAGNQQPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRVEMQLRGRDVEQWMNHRRLPEELKRRVRQAERYSWAATRGVPEKMVLENLPEDLQTDIRRHLFKFVNKVRIFSHMAEDDPILDAIRERLIQTTYIKGSKILSQGGLVQKMVFIVRGKLESVGEDGIPVPLSEGDACGEELLRWYLEQSSESKEGKKIKLHGQGLTSDRTVRCLTNVEAFSLRAKDIEEVTTLFARYLRSPRVQGVIRYESPYWRSLAANRIQVAWRYRKKRLSRANTAQNDYQTY*