Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026500 | XP_003623634.1 | 91.497 | 294 | 14 | 2 | 1 | 283 | 1 | 294 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026500 | sp|K4BIZ9|WRK70_SOLLC | 41.209 | 182 | 91 | 5 | 14 | 189 | 12 | 183 | 1.52e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026500 | G7KY64 | 91.497 | 294 | 14 | 2 | 1 | 283 | 1 | 294 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1026500 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054240 | Msa1026500 | 0.848078 | 7.706913e-60 | -8.615850e-47 |
| Msa0054310 | Msa1026500 | 0.822998 | 1.754313e-53 | -8.615850e-47 |
| Msa0054330 | Msa1026500 | 0.843993 | 9.956024e-59 | -8.615850e-47 |
| Msa0055710 | Msa1026500 | 0.812403 | 4.313732e-51 | -8.615850e-47 |
| Msa0085290 | Msa1026500 | 0.838705 | 2.453185e-57 | -8.615850e-47 |
| Msa0088550 | Msa1026500 | 0.813408 | 2.598195e-51 | -8.615850e-47 |
| Msa0094100 | Msa1026500 | 0.803086 | 4.123009e-49 | -8.615850e-47 |
| Msa0100070 | Msa1026500 | 0.866307 | 3.136823e-65 | -8.615850e-47 |
| Msa0100090 | Msa1026500 | 0.808768 | 2.633109e-50 | -8.615850e-47 |
| Msa0101810 | Msa1026500 | -0.810410 | 1.169022e-50 | -8.615850e-47 |
| Msa0607180 | Msa1026500 | 0.835351 | 1.764728e-56 | -8.615850e-47 |
| Msa0620790 | Msa1026500 | 0.805190 | 1.504380e-49 | -8.615850e-47 |
| Msa0623080 | Msa1026500 | 0.844886 | 5.726477e-59 | -8.615850e-47 |
| Msa0626280 | Msa1026500 | 0.822878 | 1.871548e-53 | -8.615850e-47 |
| Msa0626410 | Msa1026500 | 0.800955 | 1.130190e-48 | -8.615850e-47 |
| Msa0647360 | Msa1026500 | 0.835484 | 1.633252e-56 | -8.615850e-47 |
| Msa0647830 | Msa1026500 | 0.801878 | 7.314713e-49 | -8.615850e-47 |
| Msa0653020 | Msa1026500 | 0.812384 | 4.357180e-51 | -8.615850e-47 |
| Msa0657610 | Msa1026500 | 0.801168 | 1.022432e-48 | -8.615850e-47 |
| Msa0658570 | Msa1026500 | 0.820715 | 5.923864e-53 | -8.615850e-47 |
| Msa0658990 | Msa1026500 | 0.807984 | 3.870111e-50 | -8.615850e-47 |
| Msa0664850 | Msa1026500 | 0.804335 | 2.270021e-49 | -8.615850e-47 |
| Msa0686850 | Msa1026500 | 0.831026 | 2.107949e-55 | -8.615850e-47 |
| Msa0689010 | Msa1026500 | 0.824518 | 7.730020e-54 | -8.615850e-47 |
| Msa0690440 | Msa1026500 | 0.807036 | 6.150365e-50 | -8.615850e-47 |
| Msa0696740 | Msa1026500 | 0.860000 | 2.801373e-63 | -8.615850e-47 |
| Msa0696770 | Msa1026500 | 0.863802 | 1.918531e-64 | -8.615850e-47 |
| Msa0703490 | Msa1026500 | 0.813332 | 2.700905e-51 | -8.615850e-47 |
| Msa0715720 | Msa1026500 | 0.823627 | 1.250896e-53 | -8.615850e-47 |
| Msa0730270 | Msa1026500 | 0.824057 | 9.920586e-54 | -8.615850e-47 |
| Msa0732840 | Msa1026500 | 0.807623 | 4.616784e-50 | -8.615850e-47 |
| Msa0733200 | Msa1026500 | 0.814073 | 1.855251e-51 | -8.615850e-47 |
| Msa0770580 | Msa1026500 | 0.810717 | 1.003314e-50 | -8.615850e-47 |
| Msa0777930 | Msa1026500 | 0.814398 | 1.572180e-51 | -8.615850e-47 |
| Msa0813200 | Msa1026500 | 0.810918 | 9.078692e-51 | -8.615850e-47 |
| Msa0124110 | Msa1026500 | 0.849448 | 3.213415e-60 | -8.615850e-47 |
| Msa0135360 | Msa1026500 | 0.808184 | 3.509118e-50 | -8.615850e-47 |
| Msa0141230 | Msa1026500 | 0.863757 | 1.981968e-64 | -8.615850e-47 |
| Msa0148720 | Msa1026500 | 0.813173 | 2.926802e-51 | -8.615850e-47 |
| Msa0165430 | Msa1026500 | 0.804587 | 2.010929e-49 | -8.615850e-47 |
| Msa0170090 | Msa1026500 | 0.806621 | 7.527023e-50 | -8.615850e-47 |
| Msa0173990 | Msa1026500 | 0.832775 | 7.799008e-56 | -8.615850e-47 |
| Msa0179860 | Msa1026500 | 0.808788 | 2.606730e-50 | -8.615850e-47 |
| Msa0197660 | Msa1026500 | 0.807431 | 5.071259e-50 | -8.615850e-47 |
| Msa0201330 | Msa1026500 | 0.828648 | 8.001170e-55 | -8.615850e-47 |
| Msa0201370 | Msa1026500 | 0.842737 | 2.154282e-58 | -8.615850e-47 |
| Msa0201390 | Msa1026500 | 0.810961 | 8.886055e-51 | -8.615850e-47 |
| Msa0202750 | Msa1026500 | 0.822380 | 2.443792e-53 | -8.615850e-47 |
| Msa0212310 | Msa1026500 | 0.846130 | 2.635531e-59 | -8.615850e-47 |
| Msa0217400 | Msa1026500 | 0.801220 | 9.977305e-49 | -8.615850e-47 |
| Msa0223410 | Msa1026500 | -0.808765 | 2.637460e-50 | -8.615850e-47 |
| Msa0371570 | Msa1026500 | 0.822537 | 2.247149e-53 | -8.615850e-47 |
| Msa0419990 | Msa1026500 | 0.801149 | 1.031958e-48 | -8.615850e-47 |
| Msa0425890 | Msa1026500 | 0.801142 | 1.035050e-48 | -8.615850e-47 |
| Msa0426110 | Msa1026500 | 0.844304 | 8.215735e-59 | -8.615850e-47 |
| Msa0428930 | Msa1026500 | 0.801237 | 9.899543e-49 | -8.615850e-47 |
| Msa0448550 | Msa1026500 | -0.822220 | 2.661040e-53 | -8.615850e-47 |
| Msa0458440 | Msa1026500 | 0.806606 | 7.582982e-50 | -8.615850e-47 |
| Msa0466390 | Msa1026500 | 0.819043 | 1.429017e-52 | -8.615850e-47 |
| Msa0992350 | Msa1026500 | 0.815638 | 8.345690e-52 | -8.615850e-47 |
| Msa0996130 | Msa1026500 | 0.832923 | 7.165903e-56 | -8.615850e-47 |
| Msa1000020 | Msa1026500 | 0.804822 | 1.795955e-49 | -8.615850e-47 |
| Msa1026500 | Msa1026510 | 0.887595 | 1.243511e-72 | -8.615850e-47 |
| Msa1026500 | Msa1028330 | 0.804631 | 1.969101e-49 | -8.615850e-47 |
| Msa1026500 | Msa1029090 | 0.876215 | 1.667504e-68 | -8.615850e-47 |
| Msa1026500 | Msa1044090 | 0.806141 | 9.502637e-50 | -8.615850e-47 |
| Msa1026500 | Msa1055430 | 0.820260 | 7.535332e-53 | -8.615850e-47 |
| Msa1026500 | Msa1073070 | -0.807945 | 3.945020e-50 | -8.615850e-47 |
| Msa1026500 | Msa1074320 | 0.800882 | 1.169699e-48 | -8.615850e-47 |
| Msa1026500 | Msa1074570 | 0.956043 | 7.458180e-114 | -8.615850e-47 |
| Msa1026500 | Msa1074580 | 0.879571 | 1.117475e-69 | -8.615850e-47 |
| Msa1026500 | Msa1082500 | 0.811042 | 8.531217e-51 | -8.615850e-47 |
| Msa1026500 | Msa1098560 | 0.814144 | 1.789207e-51 | -8.615850e-47 |
| Msa1026500 | Msa1104000 | 0.802406 | 5.695529e-49 | -8.615850e-47 |
| Msa1026500 | Msa1107800 | 0.846650 | 1.900933e-59 | -8.615850e-47 |
| Msa1026500 | Msa1111750 | 0.889748 | 1.834497e-73 | -8.615850e-47 |
| Msa1026500 | Msa1111760 | 0.988147 | 6.807986e-173 | -8.615850e-47 |
| Msa1026500 | Msa1121660 | 0.860458 | 2.037459e-63 | -8.615850e-47 |
| Msa1026500 | Msa1135590 | 0.800903 | 1.158291e-48 | -8.615850e-47 |
| Msa1026500 | Msa1154070 | 0.991916 | 2.949797e-190 | -8.615850e-47 |
| Msa1026500 | Msa1154080 | 0.896987 | 2.175181e-76 | -8.615850e-47 |
| Msa1026500 | Msa1156180 | 0.881445 | 2.385521e-70 | -8.615850e-47 |
| Msa1026500 | Msa1162550 | -0.801226 | 9.949021e-49 | -8.615850e-47 |
| Msa1026500 | Msa1177070 | 0.811419 | 7.066753e-51 | -8.615850e-47 |
| Msa1026500 | Msa1179120 | 0.869050 | 4.139883e-66 | -8.615850e-47 |
| Msa1026500 | Msa1190400 | 0.806358 | 8.552582e-50 | -8.615850e-47 |
| Msa1026500 | Msa1195920 | 0.804869 | 1.755822e-49 | -8.615850e-47 |
| Msa1026500 | Msa1205130 | 0.802597 | 5.201814e-49 | -8.615850e-47 |
| Msa1026500 | Msa1228210 | 0.825401 | 4.782432e-54 | -8.615850e-47 |
| Msa1026500 | Msa1244250 | 0.808027 | 3.788362e-50 | -8.615850e-47 |
| Msa1026500 | Msa1249490 | 0.800609 | 1.330374e-48 | -8.615850e-47 |
| Msa1026500 | Msa1249940 | 0.838748 | 2.391279e-57 | -8.615850e-47 |
| Msa1026500 | Msa1256540 | -0.801122 | 1.045120e-48 | -8.615850e-47 |
| Msa1026500 | Msa1261470 | 0.807489 | 4.930843e-50 | -8.615850e-47 |
| Msa1026500 | Msa1271280 | 0.811521 | 6.717873e-51 | -8.615850e-47 |
| Msa1026500 | Msa1271290 | 0.812767 | 3.591420e-51 | -8.615850e-47 |
| Msa1026500 | Msa1271300 | 0.808463 | 3.059971e-50 | -8.615850e-47 |
| Msa1026500 | Msa1278840 | 0.807205 | 5.662408e-50 | -8.615850e-47 |
| Msa1026500 | Msa1284140 | 0.802375 | 5.779011e-49 | -8.615850e-47 |
| Msa1026500 | Msa1289280 | 0.801872 | 7.334620e-49 | -8.615850e-47 |
| Msa1026500 | Msa1304180 | 0.801238 | 9.894845e-49 | -8.615850e-47 |
| Msa1026500 | Msa1308380 | 0.824780 | 6.703807e-54 | -8.615850e-47 |
| Msa1026500 | Msa1314170 | 0.846541 | 2.035949e-59 | -8.615850e-47 |
| Msa1026500 | Msa1316980 | 0.811786 | 5.882580e-51 | -8.615850e-47 |
| Msa1026500 | Msa1335770 | 0.808662 | 2.774525e-50 | -8.615850e-47 |
| Msa1026500 | Msa1358960 | 0.805337 | 1.401393e-49 | -8.615850e-47 |
| Msa1026500 | Msa1363890 | 0.808339 | 3.251583e-50 | -8.615850e-47 |
| Msa1026500 | Msa1376890 | 0.811921 | 5.496459e-51 | -8.615850e-47 |
| Msa1026500 | Msa1381940 | 0.863880 | 1.814622e-64 | -8.615850e-47 |
| Msa1026500 | Msa1393410 | 0.800789 | 1.222094e-48 | -8.615850e-47 |
| Msa1026500 | Msa1431430 | 0.805723 | 1.163242e-49 | -8.615850e-47 |
| Msa1026500 | Msa1447440 | 0.804044 | 2.609438e-49 | -8.615850e-47 |
| Msa1026500 | Msa1454000 | 0.811631 | 6.355194e-51 | -8.615850e-47 |
| Msa1026500 | Msa1461250 | -0.800520 | 1.387015e-48 | -8.615850e-47 |
| Msa1026500 | Msa1464940 | 0.800591 | 1.341656e-48 | -8.615850e-47 |
| Msa0239800 | Msa1026500 | 0.800725 | 1.259806e-48 | -8.615850e-47 |
| Msa0243910 | Msa1026500 | 0.811596 | 6.469132e-51 | -8.615850e-47 |
| Msa0243930 | Msa1026500 | 0.836637 | 8.325168e-57 | -8.615850e-47 |
| Msa0243940 | Msa1026500 | 0.801974 | 6.990397e-49 | -8.615850e-47 |
| Msa0245880 | Msa1026500 | 0.857022 | 2.166001e-62 | -8.615850e-47 |
| Msa0265820 | Msa1026500 | 0.810438 | 1.152533e-50 | -8.615850e-47 |
| Msa0266000 | Msa1026500 | -0.812028 | 5.209018e-51 | -8.615850e-47 |
| Msa0282590 | Msa1026500 | 0.843464 | 1.378868e-58 | -8.615850e-47 |
| Msa0282600 | Msa1026500 | 0.821711 | 3.491317e-53 | -8.615850e-47 |
| Msa0317510 | Msa1026500 | 0.810177 | 1.312136e-50 | -8.615850e-47 |
| Msa0331920 | Msa1026500 | 0.805783 | 1.130056e-49 | -8.615850e-47 |
| Msa0335040 | Msa1026500 | 0.820481 | 6.703414e-53 | -8.615850e-47 |
| Msa0338110 | Msa1026500 | 0.814123 | 1.808344e-51 | -8.615850e-47 |
| Msa0340450 | Msa1026500 | 0.827117 | 1.867356e-54 | -8.615850e-47 |
| Msa0342340 | Msa1026500 | -0.802202 | 6.272989e-49 | -8.615850e-47 |
| Msa0343590 | Msa1026500 | 0.812953 | 3.269820e-51 | -8.615850e-47 |
| Msa0356890 | Msa1026500 | -0.820842 | 5.538045e-53 | -8.615850e-47 |
| Msa0362740 | Msa1026500 | 0.842887 | 1.964807e-58 | -8.615850e-47 |
| Msa0483650 | Msa1026500 | 0.804960 | 1.680623e-49 | -8.615850e-47 |
| Msa0487360 | Msa1026500 | 0.809538 | 1.800880e-50 | -8.615850e-47 |
| Msa0487370 | Msa1026500 | 0.804496 | 2.100778e-49 | -8.615850e-47 |
| Msa0517330 | Msa1026500 | 0.807975 | 3.887043e-50 | -8.615850e-47 |
| Msa0524890 | Msa1026500 | -0.846938 | 1.586048e-59 | -8.615850e-47 |
| Msa0528970 | Msa1026500 | 0.802300 | 5.988306e-49 | -8.615850e-47 |
| Msa0553460 | Msa1026500 | 0.810492 | 1.122258e-50 | -8.615850e-47 |
| Msa0555020 | Msa1026500 | 0.809518 | 1.818685e-50 | -8.615850e-47 |
| Msa0558690 | Msa1026500 | 0.812024 | 5.220388e-51 | -8.615850e-47 |
| Msa0559010 | Msa1026500 | 0.807041 | 6.133797e-50 | -8.615850e-47 |
| Msa0559250 | Msa1026500 | 0.836526 | 8.887587e-57 | -8.615850e-47 |
| Msa0567020 | Msa1026500 | 0.808323 | 3.277720e-50 | -8.615850e-47 |
| Msa0568440 | Msa1026500 | 0.809640 | 1.712695e-50 | -8.615850e-47 |
| Msa0868020 | Msa1026500 | 0.803026 | 4.243359e-49 | -8.615850e-47 |
| Msa0882010 | Msa1026500 | 0.807303 | 5.400161e-50 | -8.615850e-47 |
| Msa0885100 | Msa1026500 | 0.809530 | 1.808162e-50 | -8.615850e-47 |
| Msa0885130 | Msa1026500 | 0.810681 | 1.021213e-50 | -8.615850e-47 |
| Msa0896300 | Msa1026500 | 0.805998 | 1.018378e-49 | -8.615850e-47 |
| Msa0946680 | Msa1026500 | 0.824792 | 6.660267e-54 | -8.615850e-47 |
| Msa0951720 | Msa1026500 | 0.812093 | 5.042456e-51 | -8.615850e-47 |
| Msa0956390 | Msa1026500 | 0.817955 | 2.520570e-52 | -8.615850e-47 |
| Msa0961420 | Msa1026500 | -0.817639 | 2.970340e-52 | -8.615850e-47 |
| Msa0961490 | Msa1026500 | 0.816112 | 6.541223e-52 | -8.615850e-47 |
| Msa0964130 | Msa1026500 | 0.856501 | 3.083487e-62 | -8.615850e-47 |
| Msa0965520 | Msa1026500 | 0.801502 | 8.735566e-49 | -8.615850e-47 |
| Msa0965600 | Msa1026500 | 0.804735 | 1.872986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026500 | MtrunA17_Chr7g0244971 | 91.497 | 294 | 14 | 2 | 1 | 283 | 1 | 294 | 0.0 | 551 |
| Msa1026500 | MtrunA17_Chr7g0244981 | 88.070 | 285 | 30 | 4 | 1 | 283 | 1 | 283 | 0.0 | 509 |
| Msa1026500 | MtrunA17_Chr8g0350621 | 40.840 | 262 | 130 | 6 | 13 | 264 | 5 | 251 | 2.46e-61 | 195 |
| Msa1026500 | MtrunA17_Chr8g0334541 | 48.077 | 208 | 94 | 5 | 14 | 220 | 4 | 198 | 6.67e-58 | 186 |
| Msa1026500 | MtrunA17_Chr2g0315371 | 40.079 | 252 | 117 | 8 | 11 | 231 | 12 | 260 | 8.94e-50 | 166 |
| Msa1026500 | MtrunA17_Chr2g0315381 | 41.564 | 243 | 114 | 5 | 17 | 231 | 17 | 259 | 1.80e-45 | 155 |
| Msa1026500 | MtrunA17_Chr2g0315361 | 38.224 | 259 | 122 | 6 | 11 | 233 | 12 | 268 | 8.61e-43 | 148 |
| Msa1026500 | MtrunA17_Chr5g0428351 | 39.407 | 236 | 108 | 12 | 5 | 238 | 81 | 283 | 1.49e-38 | 137 |
| Msa1026500 | MtrunA17_Chr3g0128671 | 41.530 | 183 | 86 | 6 | 21 | 191 | 23 | 196 | 2.46e-38 | 137 |
| Msa1026500 | MtrunA17_Chr8g0350631 | 68.831 | 77 | 23 | 1 | 144 | 220 | 5 | 80 | 2.04e-31 | 114 |
| Msa1026500 | MtrunA17_Chr7g0275531 | 32.487 | 197 | 105 | 4 | 12 | 195 | 9 | 190 | 1.84e-27 | 108 |
| Msa1026500 | MtrunA17_Chr3g0126391 | 33.503 | 197 | 95 | 5 | 15 | 184 | 7 | 194 | 1.60e-26 | 106 |
| Msa1026500 | MtrunA17_Chr8g0347251 | 51.765 | 85 | 33 | 1 | 106 | 182 | 111 | 195 | 2.72e-23 | 97.4 |
| Msa1026500 | MtrunA17_Chr8g0387981 | 31.863 | 204 | 104 | 7 | 1 | 182 | 1 | 191 | 3.39e-21 | 92.0 |
| Msa1026500 | MtrunA17_Chr8g0350641 | 33.088 | 136 | 82 | 4 | 14 | 143 | 7 | 139 | 2.43e-15 | 71.2 |
| Msa1026500 | MtrunA17_Chr5g0431811 | 46.875 | 64 | 34 | 0 | 121 | 184 | 670 | 733 | 1.43e-14 | 73.9 |
| Msa1026500 | MtrunA17_Chr7g0224801 | 51.667 | 60 | 26 | 1 | 122 | 181 | 92 | 148 | 1.48e-14 | 70.1 |
| Msa1026500 | MtrunA17_Chr2g0315401 | 55.000 | 60 | 26 | 1 | 151 | 209 | 19 | 78 | 1.62e-14 | 69.3 |
| Msa1026500 | MtrunA17_Chr8g0383351 | 40.964 | 83 | 39 | 3 | 98 | 180 | 142 | 214 | 2.45e-13 | 68.2 |
| Msa1026500 | MtrunA17_Chr8g0386241 | 35.088 | 114 | 68 | 3 | 76 | 189 | 59 | 166 | 8.35e-13 | 65.5 |
| Msa1026500 | MtrunA17_Chr7g0270831 | 35.345 | 116 | 72 | 2 | 66 | 180 | 158 | 271 | 1.37e-12 | 67.4 |
| Msa1026500 | MtrunA17_Chr1g0194481 | 46.667 | 60 | 29 | 1 | 122 | 181 | 157 | 213 | 3.31e-12 | 65.9 |
| Msa1026500 | MtrunA17_Chr3g0129361 | 41.176 | 85 | 37 | 3 | 98 | 181 | 127 | 199 | 3.46e-12 | 64.7 |
| Msa1026500 | MtrunA17_Chr5g0418781 | 47.458 | 59 | 28 | 1 | 122 | 180 | 123 | 178 | 3.85e-12 | 65.1 |
| Msa1026500 | MtrunA17_Chr2g0322391 | 34.579 | 107 | 67 | 2 | 98 | 204 | 325 | 428 | 4.23e-12 | 66.2 |
| Msa1026500 | MtrunA17_Chr8g0335811 | 33.813 | 139 | 62 | 6 | 73 | 205 | 113 | 227 | 4.31e-12 | 64.3 |
| Msa1026500 | MtrunA17_Chr7g0270191 | 46.667 | 60 | 29 | 1 | 122 | 181 | 144 | 200 | 9.61e-12 | 64.3 |
| Msa1026500 | MtrunA17_Chr3g0099641 | 36.364 | 99 | 60 | 2 | 106 | 204 | 235 | 330 | 1.38e-11 | 64.3 |
| Msa1026500 | MtrunA17_Chr4g0051881 | 47.458 | 59 | 28 | 1 | 122 | 180 | 177 | 232 | 2.85e-11 | 63.2 |
| Msa1026500 | MtrunA17_Chr5g0443131 | 45.763 | 59 | 29 | 1 | 122 | 180 | 156 | 211 | 3.02e-11 | 62.8 |
| Msa1026500 | MtrunA17_Chr8g0348311 | 39.744 | 78 | 43 | 2 | 106 | 181 | 136 | 211 | 3.95e-11 | 62.8 |
| Msa1026500 | MtrunA17_Chr2g0315341 | 56.863 | 51 | 21 | 1 | 160 | 209 | 2 | 52 | 4.18e-11 | 59.3 |
| Msa1026500 | MtrunA17_Chr4g0068541 | 37.838 | 74 | 42 | 2 | 108 | 180 | 192 | 262 | 7.29e-11 | 62.4 |
| Msa1026500 | MtrunA17_Chr2g0294231 | 43.333 | 60 | 31 | 1 | 122 | 181 | 202 | 258 | 9.65e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026500 | AT3G56400.1 | 41.758 | 182 | 81 | 5 | 14 | 182 | 10 | 179 | 1.87e-37 | 134 |
| Msa1026500 | AT2G40750.1 | 37.500 | 200 | 92 | 8 | 14 | 182 | 14 | 211 | 3.86e-28 | 111 |
| Msa1026500 | AT1G66550.1 | 35.644 | 202 | 109 | 8 | 14 | 212 | 8 | 191 | 1.50e-27 | 107 |
| Msa1026500 | AT2G46400.1 | 34.783 | 184 | 90 | 5 | 15 | 189 | 8 | 170 | 1.27e-26 | 105 |
| Msa1026500 | AT5G01900.1 | 34.921 | 189 | 95 | 5 | 10 | 187 | 3 | 174 | 3.54e-26 | 103 |
| Msa1026500 | AT1G66550.2 | 33.831 | 201 | 109 | 7 | 14 | 212 | 8 | 186 | 7.50e-26 | 102 |
| Msa1026500 | AT5G22570.1 | 32.432 | 185 | 103 | 5 | 14 | 191 | 9 | 178 | 4.86e-24 | 99.0 |
| Msa1026500 | AT4G11070.1 | 31.959 | 194 | 108 | 4 | 12 | 182 | 8 | 200 | 6.12e-23 | 96.3 |
| Msa1026500 | AT1G66560.1 | 34.302 | 172 | 97 | 5 | 15 | 185 | 9 | 165 | 9.04e-23 | 94.7 |
| Msa1026500 | AT1G66600.1 | 34.091 | 176 | 94 | 5 | 14 | 185 | 8 | 165 | 4.93e-22 | 92.4 |
| Msa1026500 | AT2G40740.1 | 30.732 | 205 | 114 | 5 | 16 | 195 | 44 | 245 | 1.18e-20 | 89.7 |
| Msa1026500 | AT2G40740.3 | 30.732 | 205 | 114 | 5 | 16 | 195 | 53 | 254 | 1.41e-20 | 89.7 |
| Msa1026500 | AT5G24110.1 | 32.948 | 173 | 90 | 3 | 24 | 182 | 12 | 172 | 6.67e-20 | 87.8 |
| Msa1026500 | AT4G11070.2 | 32.948 | 173 | 102 | 3 | 12 | 182 | 8 | 168 | 2.81e-19 | 85.9 |
| Msa1026500 | AT1G80590.1 | 27.823 | 248 | 129 | 8 | 13 | 253 | 7 | 211 | 1.18e-18 | 83.2 |
| Msa1026500 | AT4G23810.1 | 45.882 | 85 | 38 | 1 | 106 | 182 | 133 | 217 | 1.37e-17 | 81.6 |
| Msa1026500 | AT1G69310.4 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 1.45e-14 | 72.8 |
| Msa1026500 | AT1G69310.2 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 1.45e-14 | 72.8 |
| Msa1026500 | AT1G69310.1 | 37.097 | 124 | 71 | 4 | 69 | 188 | 89 | 209 | 1.45e-14 | 72.8 |
| Msa1026500 | AT5G45260.1 | 52.632 | 57 | 27 | 0 | 124 | 180 | 1209 | 1265 | 2.13e-13 | 70.9 |
| Msa1026500 | AT5G41570.1 | 40.964 | 83 | 44 | 2 | 98 | 180 | 75 | 152 | 1.36e-12 | 65.1 |
| Msa1026500 | AT5G13080.1 | 45.070 | 71 | 36 | 1 | 122 | 192 | 66 | 133 | 1.42e-12 | 64.3 |
| Msa1026500 | AT2G37260.1 | 45.833 | 72 | 35 | 2 | 117 | 188 | 344 | 411 | 1.88e-12 | 67.4 |
| Msa1026500 | AT2G37260.2 | 45.833 | 72 | 35 | 2 | 117 | 188 | 262 | 329 | 2.50e-12 | 66.6 |
| Msa1026500 | AT2G37260.3 | 45.833 | 72 | 35 | 2 | 117 | 188 | 264 | 331 | 2.52e-12 | 66.6 |
| Msa1026500 | AT5G49520.1 | 41.791 | 67 | 36 | 1 | 122 | 188 | 220 | 283 | 4.00e-12 | 66.2 |
| Msa1026500 | AT2G46130.1 | 45.763 | 59 | 29 | 1 | 122 | 180 | 29 | 84 | 4.66e-12 | 62.0 |
| Msa1026500 | AT1G64000.1 | 43.077 | 65 | 34 | 1 | 116 | 180 | 107 | 168 | 5.97e-12 | 63.9 |
| Msa1026500 | AT3G01970.1 | 38.202 | 89 | 44 | 2 | 122 | 210 | 64 | 141 | 7.94e-12 | 62.4 |
| Msa1026500 | AT4G04450.2 | 33.929 | 112 | 71 | 2 | 94 | 204 | 168 | 277 | 1.68e-11 | 64.7 |
| Msa1026500 | AT2G47260.1 | 46.667 | 60 | 29 | 1 | 122 | 181 | 173 | 229 | 2.02e-11 | 63.9 |
| Msa1026500 | AT4G39410.1 | 38.542 | 96 | 44 | 4 | 93 | 188 | 201 | 281 | 2.35e-11 | 63.5 |
| Msa1026500 | AT4G04450.1 | 33.929 | 112 | 71 | 2 | 94 | 204 | 262 | 371 | 2.60e-11 | 64.3 |
| Msa1026500 | AT2G44745.1 | 41.667 | 84 | 42 | 3 | 98 | 180 | 122 | 199 | 2.84e-11 | 62.4 |
| Msa1026500 | AT4G18170.1 | 36.538 | 104 | 54 | 4 | 80 | 180 | 132 | 226 | 3.17e-11 | 63.2 |
| Msa1026500 | AT1G62300.1 | 44.595 | 74 | 38 | 2 | 108 | 180 | 296 | 367 | 4.61e-11 | 63.5 |
| Msa1026500 | AT1G29860.1 | 44.444 | 63 | 32 | 1 | 122 | 184 | 135 | 194 | 5.34e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATTGATGAATTGTTAAA+AGG | 0.184934 | 7_1:-58458190 | Msa1026500:CDS |
| TTCAAGAAAGTGGCCAATTA+AGG | 0.251647 | 7_1:+58456124 | None:intergenic |
| GGTGATATTGATAACATTAA+TGG | 0.251913 | 7_1:-58458124 | Msa1026500:CDS |
| TTCTTTGCAGGAACTATTAC+AGG | 0.255514 | 7_1:-58456536 | Msa1026500:intron |
| TCCATTTCTCTCAGTGAAAA+AGG | 0.266907 | 7_1:-58456304 | Msa1026500:CDS |
| CTGAGCTCTTGTATTATATA+GGG | 0.299186 | 7_1:+58458343 | None:intergenic |
| CAATATGATGTTGGCTCAAA+TGG | 0.300173 | 7_1:-58455975 | Msa1026500:three_prime_UTR |
| GATATGATTGTAGCTAGATT+TGG | 0.320624 | 7_1:-58455736 | Msa1026500:three_prime_UTR |
| GATTATTGTTCAAGAACAAT+AGG | 0.331883 | 7_1:+58458041 | None:intergenic |
| ACTGAGCTCTTGTATTATAT+AGG | 0.338023 | 7_1:+58458342 | None:intergenic |
| CAAGAGTACTTCCATTGTTA+AGG | 0.344618 | 7_1:-58457957 | Msa1026500:CDS |
| GGCTCAAATGGAACTGGACT+TGG | 0.346215 | 7_1:-58455963 | Msa1026500:three_prime_UTR |
| CTTTACAAAACAACCTACTA+TGG | 0.350539 | 7_1:-58456444 | Msa1026500:CDS |
| TGTATGATGATGTCCTTAAT+TGG | 0.353206 | 7_1:-58456137 | Msa1026500:CDS |
| TAATTCTCATTCACTTCAAA+TGG | 0.354743 | 7_1:+58455680 | None:intergenic |
| ACATCATCATACATGATATC+AGG | 0.372411 | 7_1:+58456147 | None:intergenic |
| TTTAAAAGATCTTCAGCAAC+TGG | 0.373083 | 7_1:+58458091 | None:intergenic |
| ATAAATATACCTTGGGAAAT+CGG | 0.385972 | 7_1:+58456930 | None:intergenic |
| AATCTTAGGAAGGTAGATAT+TGG | 0.388866 | 7_1:+58458267 | None:intergenic |
| CTCTAAAGAATCCTCAGATT+TGG | 0.392364 | 7_1:+58457988 | None:intergenic |
| TCTAATTAATTTCAAGAAAG+TGG | 0.395509 | 7_1:+58456114 | None:intergenic |
| GGTCATCAATGGAGAAAGTA+TGG | 0.401550 | 7_1:-58456973 | Msa1026500:CDS |
| CTTGATTCTCATGATCAGTT+AGG | 0.404590 | 7_1:-58456180 | Msa1026500:CDS |
| GGAGAATCCTCTATGATCTC+AGG | 0.407384 | 7_1:+58456393 | None:intergenic |
| CAGTCTTGTTTGGCTGGTGT+TGG | 0.412342 | 7_1:+58456327 | None:intergenic |
| ATTATTGTTCAAGAACAATA+GGG | 0.414455 | 7_1:+58458042 | None:intergenic |
| CCTTCAAATGATTACCTCTC+TGG | 0.419974 | 7_1:-58456249 | Msa1026500:CDS |
| GATGTTGGCTCAAATGGAAC+TGG | 0.431212 | 7_1:-58455969 | Msa1026500:three_prime_UTR |
| GAGAAATGGACAGTCTTGTT+TGG | 0.445787 | 7_1:+58456317 | None:intergenic |
| TATATATATGTATGTATGTA+TGG | 0.448744 | 7_1:-58455780 | Msa1026500:three_prime_UTR |
| AGTCTTGTTTGGCTGGTGTT+GGG | 0.452762 | 7_1:+58456328 | None:intergenic |
| AGGTAATCATTTGAAGGAGG+AGG | 0.457187 | 7_1:+58456255 | None:intergenic |
| CCAGAGAGGTAATCATTTGA+AGG | 0.470477 | 7_1:+58456249 | None:intergenic |
| TGATTGATGAATTGTTAAAA+GGG | 0.474553 | 7_1:-58458189 | Msa1026500:CDS |
| CAGAAAAGTTTCACAAACAT+GGG | 0.477292 | 7_1:-58457025 | Msa1026500:CDS |
| AATGGACAGTCTTGTTTGGC+TGG | 0.477532 | 7_1:+58456321 | None:intergenic |
| AGAAATATTCTGAATGAAAG+TGG | 0.485810 | 7_1:-58458145 | Msa1026500:CDS |
| TCAGAAAAGTTTCACAAACA+TGG | 0.494934 | 7_1:-58457026 | Msa1026500:intron |
| CTAGCTCATGGTAGTGGTCG+TGG | 0.509082 | 7_1:-58458217 | Msa1026500:CDS |
| ACAAGTGTGATGGCCATAGT+AGG | 0.510474 | 7_1:+58456431 | None:intergenic |
| AACAATAATCCTACTTCTGA+GGG | 0.511593 | 7_1:-58458028 | Msa1026500:CDS |
| TCTGATCGTCCCGTGGAAGA+TGG | 0.520055 | 7_1:-58456994 | Msa1026500:CDS |
| GAAAATCTAGCTCATGGTAG+TGG | 0.526481 | 7_1:-58458223 | Msa1026500:CDS |
| CCGTGGAAGATGGTCATCAA+TGG | 0.528577 | 7_1:-58456984 | Msa1026500:CDS |
| AGCTAAGGAACATGGAAGAC+TGG | 0.529377 | 7_1:+58456364 | None:intergenic |
| GTAGAGGCTGTTACAAAAGA+AGG | 0.531049 | 7_1:-58457931 | Msa1026500:intron |
| AGAGAAGACTACACTAAAGA+TGG | 0.538967 | 7_1:-58455907 | Msa1026500:three_prime_UTR |
| GTTGTCAAAGCTAAGGAACA+TGG | 0.540400 | 7_1:+58456356 | None:intergenic |
| AAATCAGAGCCCTCAGAAGT+AGG | 0.544337 | 7_1:+58458019 | None:intergenic |
| GAACAATAATCCTACTTCTG+AGG | 0.546015 | 7_1:-58458029 | Msa1026500:CDS |
| GGAAAGAGTTGTCAAAGCTA+AGG | 0.561012 | 7_1:+58456349 | None:intergenic |
| ACTATGTAACAATATGATGT+TGG | 0.562103 | 7_1:-58455984 | Msa1026500:three_prime_UTR |
| TGCACTCACAAACATGATCA+AGG | 0.563442 | 7_1:-58456513 | Msa1026500:CDS |
| GAGAATCCTCTATGATCTCA+GGG | 0.568526 | 7_1:+58456394 | None:intergenic |
| GGACTTGGATTTGAACATTG+TGG | 0.570945 | 7_1:-58455948 | Msa1026500:three_prime_UTR |
| CCATTGATGACCATCTTCCA+CGG | 0.575191 | 7_1:+58456984 | None:intergenic |
| GCAAGATTCTACAAGTGTGA+TGG | 0.576779 | 7_1:+58456421 | None:intergenic |
| TTGGTATTGAAATCTTAGGA+AGG | 0.577815 | 7_1:+58458257 | None:intergenic |
| GCCTCTACGTTCCTTAACAA+TGG | 0.594370 | 7_1:+58457946 | None:intergenic |
| AGTTTCACAAACATGGGAGA+AGG | 0.598123 | 7_1:-58457019 | Msa1026500:CDS |
| ACAAGTGCAACAAATTCAAG+AGG | 0.601952 | 7_1:-58456475 | Msa1026500:CDS |
| AAAGTCGGTCAATATCATCA+TGG | 0.607816 | 7_1:-58455849 | Msa1026500:three_prime_UTR |
| AACATGGAAGACTGGTCACA+AGG | 0.611016 | 7_1:+58456372 | None:intergenic |
| CATTGATGACCATCTTCCAC+GGG | 0.612085 | 7_1:+58456985 | None:intergenic |
| ATATTAGTCATCAACAAAGT+CGG | 0.614924 | 7_1:-58455864 | Msa1026500:three_prime_UTR |
| TTTGCAACTCACCAAATCTG+AGG | 0.616026 | 7_1:-58457999 | Msa1026500:CDS |
| TGAGCTCTTGTATTATATAG+GGG | 0.620923 | 7_1:+58458344 | None:intergenic |
| GCAAAGCCCTGAGATCATAG+AGG | 0.632964 | 7_1:-58456400 | Msa1026500:CDS |
| TCTTGCACACCGATTTCCCA+AGG | 0.637507 | 7_1:-58456939 | Msa1026500:intron |
| GAGAGGTAATCATTTGAAGG+AGG | 0.645608 | 7_1:+58456252 | None:intergenic |
| TCCATTGTTAAGGAACGTAG+AGG | 0.656442 | 7_1:-58457947 | Msa1026500:CDS |
| GAAGGAGTCTGATCGTCCCG+TGG | 0.657169 | 7_1:-58457001 | Msa1026500:CDS |
| GCAAGATGTAGTACAACGAG+AGG | 0.666237 | 7_1:-58455810 | Msa1026500:three_prime_UTR |
| CATCAAAAGTGAGTCCAGAG+AGG | 0.707648 | 7_1:+58456235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTCATTTTTCATTTT+TGG | + | chr7_1:58455758-58455777 | None:intergenic | 15.0% |
| !!! | TTTTGATAAGAGAAAATTAT+TGG | + | chr7_1:58456579-58456598 | None:intergenic | 15.0% |
| !! | CAAAATAAATAAAAATGAGA+GGG | + | chr7_1:58456780-58456799 | None:intergenic | 15.0% |
| !! | ACAAAATAAATAAAAATGAG+AGG | + | chr7_1:58456781-58456800 | None:intergenic | 15.0% |
| !! | TTAATTTCTTTACATCTTAA+AGG | - | chr7_1:58457272-58457291 | Msa1026500:intron | 15.0% |
| !! | TATATATATGTATGTATGTA+TGG | - | chr7_1:58458213-58458232 | Msa1026500:CDS | 15.0% |
| !!! | ATTTTTGGTATTGAAATCTT+AGG | + | chr7_1:58455743-58455762 | None:intergenic | 20.0% |
| !! | TGATTGATGAATTGTTAAAA+GGG | - | chr7_1:58455804-58455823 | Msa1026500:three_prime_UTR | 20.0% |
| !! | ATTATTGTTCAAGAACAATA+GGG | + | chr7_1:58455954-58455973 | None:intergenic | 20.0% |
| !! | TATAGAATTATAGATGTGTT+GGG | + | chr7_1:58456215-58456234 | None:intergenic | 20.0% |
| !! | ATATAGAATTATAGATGTGT+TGG | + | chr7_1:58456216-58456235 | None:intergenic | 20.0% |
| !!! | AATTTTAGATGTATGAAAAG+TGG | + | chr7_1:58456239-58456258 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTTTTTCTTCTT+CGG | - | chr7_1:58456309-58456328 | Msa1026500:CDS | 20.0% |
| !!! | TTATTTGAACTTTTAAGATG+AGG | - | chr7_1:58456419-58456438 | Msa1026500:CDS | 20.0% |
| !! | ATATTACTCATATGTTGTAA+AGG | + | chr7_1:58456499-58456518 | None:intergenic | 20.0% |
| !! | TTACAACATATGAGTAATAT+TGG | - | chr7_1:58456499-58456518 | Msa1026500:CDS | 20.0% |
| !! | TACAACATATGAGTAATATT+GGG | - | chr7_1:58456500-58456519 | Msa1026500:CDS | 20.0% |
| !!! | ATAAGAGAAAATTATTGGTT+AGG | + | chr7_1:58456574-58456593 | None:intergenic | 20.0% |
| !! | ATGATGAACAATAATTGATA+GGG | + | chr7_1:58456707-58456726 | None:intergenic | 20.0% |
| !!! | TGTTGTGTTTTTTTTTTTTG+TGG | - | chr7_1:58456798-58456817 | Msa1026500:intron | 20.0% |
| !! | TGAAAAAGAATTGCATAATT+GGG | + | chr7_1:58456950-58456969 | None:intergenic | 20.0% |
| !! | GACAATCTTAAAAGTAAAAT+GGG | + | chr7_1:58457110-58457129 | None:intergenic | 20.0% |
| !! | TGACAATCTTAAAAGTAAAA+TGG | + | chr7_1:58457111-58457130 | None:intergenic | 20.0% |
| !! | TTCAAATAGTGAAATTTGAT+TGG | + | chr7_1:58457140-58457159 | None:intergenic | 20.0% |
| !!! | TAAAATGTTAAATGAGTTGA+AGG | - | chr7_1:58457319-58457338 | Msa1026500:intron | 20.0% |
| !! | TATTAAGAAAGAAGAATTAG+AGG | + | chr7_1:58457399-58457418 | None:intergenic | 20.0% |
| !! | TGAATATTTATATTCTTTGC+AGG | - | chr7_1:58457445-58457464 | Msa1026500:intron | 20.0% |
| !! | TCTAATTAATTTCAAGAAAG+TGG | + | chr7_1:58457882-58457901 | None:intergenic | 20.0% |
| !! | AAAAATGAAAATCTAGCTCA+TGG | - | chr7_1:58455764-58455783 | Msa1026500:three_prime_UTR | 25.0% |
| ! | GTGATTGATGAATTGTTAAA+AGG | - | chr7_1:58455803-58455822 | Msa1026500:three_prime_UTR | 25.0% |
| ! | AGAAATATTCTGAATGAAAG+TGG | - | chr7_1:58455848-58455867 | Msa1026500:three_prime_UTR | 25.0% |
| !! | GGTGATATTGATAACATTAA+TGG | - | chr7_1:58455869-58455888 | Msa1026500:three_prime_UTR | 25.0% |
| ! | GATTATTGTTCAAGAACAAT+AGG | + | chr7_1:58455955-58455974 | None:intergenic | 25.0% |
| ! | AGTAAAAAGAGTTGAATATG+TGG | + | chr7_1:58456121-58456140 | None:intergenic | 25.0% |
| ! | GAAAAACCATAGGTTAAAAT+AGG | + | chr7_1:58456169-58456188 | None:intergenic | 25.0% |
| !! | TTTTTCATACACACTATTCA+TGG | - | chr7_1:58456183-58456202 | Msa1026500:CDS | 25.0% |
| ! | ACAACATATGAGTAATATTG+GGG | - | chr7_1:58456501-58456520 | Msa1026500:CDS | 25.0% |
| ! | GATGATGAACAATAATTGAT+AGG | + | chr7_1:58456708-58456727 | None:intergenic | 25.0% |
| !! | TTTCATAGTCTTACATTGAT+TGG | - | chr7_1:58456890-58456909 | Msa1026500:intron | 25.0% |
| !!! | GATTGGTTTTGAGTTTTTTT+TGG | - | chr7_1:58456907-58456926 | Msa1026500:intron | 25.0% |
| ! | CTGAAAAAGAATTGCATAAT+TGG | + | chr7_1:58456951-58456970 | None:intergenic | 25.0% |
| ! | ATAAATATACCTTGGGAAAT+CGG | + | chr7_1:58457066-58457085 | None:intergenic | 25.0% |
| ! | AACTCGTATAAATATACCTT+GGG | + | chr7_1:58457073-58457092 | None:intergenic | 25.0% |
| ! | AAACTCGTATAAATATACCT+TGG | + | chr7_1:58457074-58457093 | None:intergenic | 25.0% |
| ! | ATAGTGAAATTTGATTGGAT+TGG | + | chr7_1:58457135-58457154 | None:intergenic | 25.0% |
| ! | ACACTCAAAAACTTAAACAA+AGG | + | chr7_1:58457935-58457954 | None:intergenic | 25.0% |
| ! | ACTATGTAACAATATGATGT+TGG | - | chr7_1:58458009-58458028 | Msa1026500:CDS | 25.0% |
| ! | ATATTAGTCATCAACAAAGT+CGG | - | chr7_1:58458129-58458148 | Msa1026500:CDS | 25.0% |
| ! | TAATTCTCATTCACTTCAAA+TGG | + | chr7_1:58458316-58458335 | None:intergenic | 25.0% |
| TGAGCTCTTGTATTATATAG+GGG | + | chr7_1:58455652-58455671 | None:intergenic | 30.0% | |
| CTGAGCTCTTGTATTATATA+GGG | + | chr7_1:58455653-58455672 | None:intergenic | 30.0% | |
| ACTGAGCTCTTGTATTATAT+AGG | + | chr7_1:58455654-58455673 | None:intergenic | 30.0% | |
| AATCTTAGGAAGGTAGATAT+TGG | + | chr7_1:58455729-58455748 | None:intergenic | 30.0% | |
| ! | TTGGTATTGAAATCTTAGGA+AGG | + | chr7_1:58455739-58455758 | None:intergenic | 30.0% |
| TTTAAAAGATCTTCAGCAAC+TGG | + | chr7_1:58455905-58455924 | None:intergenic | 30.0% | |
| ! | AGTTGCTGAAGATCTTTTAA+AGG | - | chr7_1:58455904-58455923 | Msa1026500:three_prime_UTR | 30.0% |
| AACAATAATCCTACTTCTGA+GGG | - | chr7_1:58455965-58455984 | Msa1026500:three_prime_UTR | 30.0% | |
| !!! | AGTTGACCTATTTTAACCTA+TGG | - | chr7_1:58456160-58456179 | Msa1026500:CDS | 30.0% |
| TAGTGTGTATGAAAAACCAT+AGG | + | chr7_1:58456179-58456198 | None:intergenic | 30.0% | |
| CTTTCCGAAGAAGAAAAAAA+AGG | + | chr7_1:58456316-58456335 | None:intergenic | 30.0% | |
| !! | GTGACTTTAGTGTATTTTAG+AGG | + | chr7_1:58456637-58456656 | None:intergenic | 30.0% |
| ATTGATAGGGTCCAATATTA+GGG | + | chr7_1:58456694-58456713 | None:intergenic | 30.0% | |
| AATTGATAGGGTCCAATATT+AGG | + | chr7_1:58456695-58456714 | None:intergenic | 30.0% | |
| ! | GTTGTTTCCTCTAGTTATTA+TGG | - | chr7_1:58456836-58456855 | Msa1026500:intron | 30.0% |
| ! | TCCTCTAGTTATTATGGTTT+TGG | - | chr7_1:58456842-58456861 | Msa1026500:intron | 30.0% |
| TCAGAAAAGTTTCACAAACA+TGG | - | chr7_1:58456967-58456986 | Msa1026500:CDS | 30.0% | |
| CAGAAAAGTTTCACAAACAT+GGG | - | chr7_1:58456968-58456987 | Msa1026500:CDS | 30.0% | |
| !! | TAGTAGGTTGTTTTGTAAAG+AGG | + | chr7_1:58457549-58457568 | None:intergenic | 30.0% |
| CTTTACAAAACAACCTACTA+TGG | - | chr7_1:58457549-58457568 | Msa1026500:intron | 30.0% | |
| ACATCATCATACATGATATC+AGG | + | chr7_1:58457849-58457868 | None:intergenic | 30.0% | |
| ! | TGTATGATGATGTCCTTAAT+TGG | - | chr7_1:58457856-58457875 | Msa1026500:intron | 30.0% |
| GATATGATTGTAGCTAGATT+TGG | - | chr7_1:58458257-58458276 | Msa1026500:five_prime_UTR | 30.0% | |
| GAACAATAATCCTACTTCTG+AGG | - | chr7_1:58455964-58455983 | Msa1026500:three_prime_UTR | 35.0% | |
| ! | CTCTAAAGAATCCTCAGATT+TGG | + | chr7_1:58456008-58456027 | None:intergenic | 35.0% |
| !! | CAAGAGTACTTCCATTGTTA+AGG | - | chr7_1:58456036-58456055 | Msa1026500:three_prime_UTR | 35.0% |
| ACATATGAGTAATATTGGGG+TGG | - | chr7_1:58456504-58456523 | Msa1026500:CDS | 35.0% | |
| CATATGAGTAATATTGGGGT+GGG | - | chr7_1:58456505-58456524 | Msa1026500:CDS | 35.0% | |
| ATATGAGTAATATTGGGGTG+GGG | - | chr7_1:58456506-58456525 | Msa1026500:CDS | 35.0% | |
| TATCCACTACATGTGATGAA+AGG | - | chr7_1:58456738-58456757 | Msa1026500:intron | 35.0% | |
| GCCAAAACCATAATAACTAG+AGG | + | chr7_1:58456846-58456865 | None:intergenic | 35.0% | |
| TTCTTTGCAGGAACTATTAC+AGG | - | chr7_1:58457457-58457476 | Msa1026500:intron | 35.0% | |
| ACAAGTGCAACAAATTCAAG+AGG | - | chr7_1:58457518-58457537 | Msa1026500:intron | 35.0% | |
| !! | TAGGTTGTTTTGTAAAGAGG+TGG | + | chr7_1:58457546-58457565 | None:intergenic | 35.0% |
| TCCATTTCTCTCAGTGAAAA+AGG | - | chr7_1:58457689-58457708 | Msa1026500:intron | 35.0% | |
| !! | TCCTTTTTCACTGAGAGAAA+TGG | + | chr7_1:58457693-58457712 | None:intergenic | 35.0% |
| ATTTCTCTCAGTGAAAAAGG+AGG | - | chr7_1:58457692-58457711 | Msa1026500:intron | 35.0% | |
| !! | CACTTTTGATGATCCAGAAA+AGG | - | chr7_1:58457770-58457789 | Msa1026500:intron | 35.0% |
| CTTGATTCTCATGATCAGTT+AGG | - | chr7_1:58457813-58457832 | Msa1026500:intron | 35.0% | |
| TTCAAGAAAGTGGCCAATTA+AGG | + | chr7_1:58457872-58457891 | None:intergenic | 35.0% | |
| !! | CAATATGATGTTGGCTCAAA+TGG | - | chr7_1:58458018-58458037 | Msa1026500:CDS | 35.0% |
| AGAGAAGACTACACTAAAGA+TGG | - | chr7_1:58458086-58458105 | Msa1026500:CDS | 35.0% | |
| AAAGTCGGTCAATATCATCA+TGG | - | chr7_1:58458144-58458163 | Msa1026500:CDS | 35.0% | |
| ! | GAAAATCTAGCTCATGGTAG+TGG | - | chr7_1:58455770-58455789 | Msa1026500:three_prime_UTR | 40.0% |
| TTTGCAACTCACCAAATCTG+AGG | - | chr7_1:58455994-58456013 | Msa1026500:three_prime_UTR | 40.0% | |
| TCCATTGTTAAGGAACGTAG+AGG | - | chr7_1:58456046-58456065 | Msa1026500:three_prime_UTR | 40.0% | |
| GTAGAGGCTGTTACAAAAGA+AGG | - | chr7_1:58456062-58456081 | Msa1026500:three_prime_UTR | 40.0% | |
| TAGGAGAGAGATAGAGACAA+AGG | + | chr7_1:58456555-58456574 | None:intergenic | 40.0% | |
| ! | GGCTTTAGTGACTTTGTGTT+GGG | + | chr7_1:58456668-58456687 | None:intergenic | 40.0% |
| ATAGGGTCCAATATTAGGGT+GGG | + | chr7_1:58456690-58456709 | None:intergenic | 40.0% | |
| AGTCCTTTCATCACATGTAG+TGG | + | chr7_1:58456744-58456763 | None:intergenic | 40.0% | |
| AGTTTCACAAACATGGGAGA+AGG | - | chr7_1:58456974-58456993 | Msa1026500:CDS | 40.0% | |
| GGTCATCAATGGAGAAAGTA+TGG | - | chr7_1:58457020-58457039 | Msa1026500:CDS | 40.0% | |
| !!! | CGGTGTGCAAGATCTTTTTT+TGG | + | chr7_1:58457046-58457065 | None:intergenic | 40.0% |
| TGCACTCACAAACATGATCA+AGG | - | chr7_1:58457480-58457499 | Msa1026500:intron | 40.0% | |
| GCAAGATTCTACAAGTGTGA+TGG | + | chr7_1:58457575-58457594 | None:intergenic | 40.0% | |
| GAGAATCCTCTATGATCTCA+GGG | + | chr7_1:58457602-58457621 | None:intergenic | 40.0% | |
| GTTGTCAAAGCTAAGGAACA+TGG | + | chr7_1:58457640-58457659 | None:intergenic | 40.0% | |
| GGAAAGAGTTGTCAAAGCTA+AGG | + | chr7_1:58457647-58457666 | None:intergenic | 40.0% | |
| !! | GAGAAATGGACAGTCTTGTT+TGG | + | chr7_1:58457679-58457698 | None:intergenic | 40.0% |
| AGTGAAAAAGGAGGATTGCA+AGG | - | chr7_1:58457701-58457720 | Msa1026500:intron | 40.0% | |
| AGGTAATCATTTGAAGGAGG+AGG | + | chr7_1:58457741-58457760 | None:intergenic | 40.0% | |
| GAGAGGTAATCATTTGAAGG+AGG | + | chr7_1:58457744-58457763 | None:intergenic | 40.0% | |
| CCAGAGAGGTAATCATTTGA+AGG | + | chr7_1:58457747-58457766 | None:intergenic | 40.0% | |
| CCTTCAAATGATTACCTCTC+TGG | - | chr7_1:58457744-58457763 | Msa1026500:intron | 40.0% | |
| ! | GATAGTGTGACATCCTTTTC+TGG | + | chr7_1:58457786-58457805 | None:intergenic | 40.0% |
| GGACTTGGATTTGAACATTG+TGG | - | chr7_1:58458045-58458064 | Msa1026500:CDS | 40.0% | |
| AAATCAGAGCCCTCAGAAGT+AGG | + | chr7_1:58455977-58455996 | None:intergenic | 45.0% | |
| GCCTCTACGTTCCTTAACAA+TGG | + | chr7_1:58456050-58456069 | None:intergenic | 45.0% | |
| GACTTTGTGTTGGGTGACTT+TGG | + | chr7_1:58456659-58456678 | None:intergenic | 45.0% | |
| ! | GGGCTTTAGTGACTTTGTGT+TGG | + | chr7_1:58456669-58456688 | None:intergenic | 45.0% |
| CTAAAGCCCCACCCTAATAT+TGG | - | chr7_1:58456680-58456699 | Msa1026500:intron | 45.0% | |
| TAGGGTCCAATATTAGGGTG+GGG | + | chr7_1:58456689-58456708 | None:intergenic | 45.0% | |
| GATAGGGTCCAATATTAGGG+TGG | + | chr7_1:58456691-58456710 | None:intergenic | 45.0% | |
| ! | CATTGATGACCATCTTCCAC+GGG | + | chr7_1:58457011-58457030 | None:intergenic | 45.0% |
| ! | CCATTGATGACCATCTTCCA+CGG | + | chr7_1:58457012-58457031 | None:intergenic | 45.0% |
| ACAAGTGTGATGGCCATAGT+AGG | + | chr7_1:58457565-58457584 | None:intergenic | 45.0% | |
| GGAGAATCCTCTATGATCTC+AGG | + | chr7_1:58457603-58457622 | None:intergenic | 45.0% | |
| ! | AACATGGAAGACTGGTCACA+AGG | + | chr7_1:58457624-58457643 | None:intergenic | 45.0% |
| AGCTAAGGAACATGGAAGAC+TGG | + | chr7_1:58457632-58457651 | None:intergenic | 45.0% | |
| !! | AGTCTTGTTTGGCTGGTGTT+GGG | + | chr7_1:58457668-58457687 | None:intergenic | 45.0% |
| !! | AATGGACAGTCTTGTTTGGC+TGG | + | chr7_1:58457675-58457694 | None:intergenic | 45.0% |
| CATCAAAAGTGAGTCCAGAG+AGG | + | chr7_1:58457761-58457780 | None:intergenic | 45.0% | |
| !! | GATGTTGGCTCAAATGGAAC+TGG | - | chr7_1:58458024-58458043 | Msa1026500:CDS | 45.0% |
| GCAAGATGTAGTACAACGAG+AGG | - | chr7_1:58458183-58458202 | Msa1026500:CDS | 45.0% | |
| CCGTGGAAGATGGTCATCAA+TGG | - | chr7_1:58457009-58457028 | Msa1026500:CDS | 50.0% | |
| !! | TCTTGCACACCGATTTCCCA+AGG | - | chr7_1:58457054-58457073 | Msa1026500:intron | 50.0% |
| GCAAAGCCCTGAGATCATAG+AGG | - | chr7_1:58457593-58457612 | Msa1026500:intron | 50.0% | |
| !! | CAGTCTTGTTTGGCTGGTGT+TGG | + | chr7_1:58457669-58457688 | None:intergenic | 50.0% |
| GGCTCAAATGGAACTGGACT+TGG | - | chr7_1:58458030-58458049 | Msa1026500:CDS | 50.0% | |
| !! | CTAGCTCATGGTAGTGGTCG+TGG | - | chr7_1:58455776-58455795 | Msa1026500:three_prime_UTR | 55.0% |
| ! | GGCTTCCGTGACTTTGGCTT+CGG | - | chr7_1:58456527-58456546 | Msa1026500:CDS | 55.0% |
| !! | AGGCACCGAAGCCAAAGTCA+CGG | + | chr7_1:58456535-58456554 | None:intergenic | 55.0% |
| TCTGATCGTCCCGTGGAAGA+TGG | - | chr7_1:58456999-58457018 | Msa1026500:CDS | 55.0% | |
| GAAGGAGTCTGATCGTCCCG+TGG | - | chr7_1:58456992-58457011 | Msa1026500:CDS | 60.0% | |
| GGGTGGGGCTTCCGTGACTT+TGG | - | chr7_1:58456521-58456540 | Msa1026500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 58455640 | 58458375 | 58455640 | ID=Msa1026500;Name=Msa1026500 |
| chr7_1 | mRNA | 58455640 | 58458375 | 58455640 | ID=Msa1026500-mRNA-1;Parent=Msa1026500;Name=Msa1026500-mRNA-1;_AED=0.25;_eAED=0.25;_QI=121|1|1|1|1|1|3|485|283 |
| chr7_1 | exon | 58455640 | 58456548 | 58455640 | ID=Msa1026500-mRNA-1:exon:11691;Parent=Msa1026500-mRNA-1 |
| chr7_1 | exon | 58456940 | 58457044 | 58456940 | ID=Msa1026500-mRNA-1:exon:11690;Parent=Msa1026500-mRNA-1 |
| chr7_1 | exon | 58457932 | 58458375 | 58457932 | ID=Msa1026500-mRNA-1:exon:11689;Parent=Msa1026500-mRNA-1 |
| chr7_1 | five_prime_UTR | 58458255 | 58458375 | 58458255 | ID=Msa1026500-mRNA-1:five_prime_utr;Parent=Msa1026500-mRNA-1 |
| chr7_1 | CDS | 58457932 | 58458254 | 58457932 | ID=Msa1026500-mRNA-1:cds;Parent=Msa1026500-mRNA-1 |
| chr7_1 | CDS | 58456940 | 58457044 | 58456940 | ID=Msa1026500-mRNA-1:cds;Parent=Msa1026500-mRNA-1 |
| chr7_1 | CDS | 58456125 | 58456548 | 58456125 | ID=Msa1026500-mRNA-1:cds;Parent=Msa1026500-mRNA-1 |
| chr7_1 | three_prime_UTR | 58455640 | 58456124 | 58455640 | ID=Msa1026500-mRNA-1:three_prime_utr;Parent=Msa1026500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
