AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961490 MtrunA17_Chr6g0480851 94.357 762 38 1 7 763 1 762 0.0 1464
Msa0961490 MtrunA17_Chr6g0480781 77.207 759 153 3 7 760 1 744 0.0 1205
Msa0961490 MtrunA17_Chr6g0480671 65.116 774 244 5 7 760 1 768 0.0 974
Msa0961490 MtrunA17_Chr6g0481021 69.559 680 183 3 97 754 20 697 0.0 928
Msa0961490 MtrunA17_Chr6g0480741 63.841 755 194 7 7 755 1 682 0.0 910
Msa0961490 MtrunA17_Chr6g0480681 58.081 792 216 9 7 761 1 713 0.0 871
Msa0961490 MtrunA17_Chr5g0395411 80.702 399 50 3 7 404 1 373 0.0 641
Msa0961490 MtrunA17_Chr5g0395421 86.325 351 45 1 388 735 18 368 0.0 602
Msa0961490 MtrunA17_Chr6g0480791 78.827 307 52 2 7 312 1 295 1.05e-170 492
Msa0961490 MtrunA17_Chr3g0126541 39.073 604 327 14 173 751 55 642 6.08e-133 410
Msa0961490 MtrunA17_Chr2g0305771 39.280 583 315 15 190 749 43 609 1.80e-131 406
Msa0961490 MtrunA17_Chr3g0139071 38.889 594 328 13 190 762 73 652 5.23e-131 406
Msa0961490 MtrunA17_Chr4g0073941 39.012 587 324 11 190 757 99 670 1.41e-128 400
Msa0961490 MtrunA17_Chr4g0028861 39.153 567 316 11 190 742 124 675 5.83e-128 397
Msa0961490 MtrunA17_Chr2g0326871 38.475 577 326 12 190 752 77 638 8.77e-128 397
Msa0961490 MtrunA17_Chr1g0158861 37.088 577 333 14 190 751 83 644 3.62e-126 393
Msa0961490 MtrunA17_Chr6g0480771 71.538 260 71 1 502 761 12 268 2.66e-125 376
Msa0961490 MtrunA17_Chr7g0275581 37.522 581 329 12 190 751 83 648 6.21e-124 387
Msa0961490 MtrunA17_Chr7g0228181 37.133 579 328 12 190 747 44 607 2.81e-123 384
Msa0961490 MtrunA17_Chr4g0001481 38.783 575 314 13 190 742 101 659 1.54e-120 379
Msa0961490 MtrunA17_Chr1g0181121 37.245 588 337 12 190 762 44 614 5.23e-118 370
Msa0961490 MtrunA17_Chr3g0125651 36.833 581 327 14 190 747 36 599 3.47e-114 361
Msa0961490 MtrunA17_Chr8g0347121 34.087 619 331 13 189 750 59 657 2.04e-113 360
Msa0961490 MtrunA17_Chr6g0480841 81.553 206 38 0 556 761 2 207 1.34e-111 337
Msa0961490 MtrunA17_Chr8g0360821 35.836 586 334 16 189 749 61 629 3.61e-108 345
Msa0961490 MtrunA17_Chr7g0218341 35.135 592 345 13 190 757 109 685 7.46e-94 308
Msa0961490 MtrunA17_Chr2g0318561 34.698 464 270 9 306 749 2 452 2.12e-77 258
Msa0961490 MtrunA17_Chr6g0480751 44.850 301 80 5 7 307 1 215 4.56e-71 232
Msa0961490 MtrunA17_Chr6g0480821 59.459 185 70 1 307 486 25 209 2.63e-66 219
Msa0961490 MtrunA17_Chr6g0480761 56.209 153 59 2 322 466 13 165 1.74e-49 172
Msa0961490 MtrunA17_Chr2g0326861 36.364 198 118 4 265 455 14 210 2.47e-34 130
Msa0961490 MtrunA17_Chr6g0480831 76.712 73 16 1 471 543 1 72 5.19e-23 93.2
Msa0961490 MtrunA17_Chr2g0318551 31.250 160 89 6 190 344 63 206 4.94e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961490 AT3G17700.1 58.161 772 290 9 8 758 3 762 0.0 860
Msa0961490 AT3G17690.1 56.694 732 290 10 39 757 9 726 0.0 822
Msa0961490 AT3G17700.2 58.174 679 251 9 8 665 3 669 0.0 760
Msa0961490 AT3G17690.2 56.240 633 258 8 39 661 9 632 0.0 708
Msa0961490 AT3G17690.3 52.987 519 227 7 35 543 5 516 0.0 536
Msa0961490 AT1G19780.1 41.796 579 302 13 190 747 97 661 1.26e-135 419
Msa0961490 AT5G53130.1 40.000 570 306 11 190 742 84 634 6.98e-135 416
Msa0961490 AT1G01340.2 38.176 592 322 15 189 757 67 637 2.16e-132 409
Msa0961490 AT1G01340.1 38.176 592 322 15 189 757 62 632 3.72e-132 409
Msa0961490 AT4G01010.1 37.543 586 335 11 189 757 67 638 2.27e-130 404
Msa0961490 AT4G01010.2 37.543 586 335 11 189 757 67 638 2.27e-130 404
Msa0961490 AT1G15990.1 41.034 580 306 13 190 747 90 655 2.43e-130 405
Msa0961490 AT2G28260.2 38.850 574 318 12 190 747 28 584 8.20e-129 398
Msa0961490 AT4G30360.1 38.462 585 326 13 190 754 71 641 1.47e-128 400
Msa0961490 AT2G24610.1 39.425 591 324 15 190 760 72 648 1.72e-128 400
Msa0961490 AT2G28260.1 38.850 574 318 12 190 747 68 624 2.16e-128 398
Msa0961490 AT2G24610.2 39.255 591 325 14 190 760 87 663 4.79e-128 399
Msa0961490 AT4G30560.5 40.716 587 297 13 190 747 77 641 9.64e-126 392
Msa0961490 AT4G30560.2 40.716 587 297 13 190 747 77 641 9.64e-126 392
Msa0961490 AT4G30560.3 40.716 587 297 13 190 747 77 641 9.64e-126 392
Msa0961490 AT4G30560.1 40.716 587 297 13 190 747 103 667 1.55e-125 392
Msa0961490 AT4G30560.4 40.716 587 297 13 190 747 103 667 1.55e-125 392
Msa0961490 AT2G23980.6 39.587 581 312 12 190 747 76 640 6.65e-124 387
Msa0961490 AT2G23980.9 39.587 581 312 12 190 747 103 667 1.96e-123 387
Msa0961490 AT2G23980.10 39.587 581 312 12 190 747 103 667 1.96e-123 387
Msa0961490 AT2G23980.1 39.587 581 312 12 190 747 103 667 1.96e-123 387
Msa0961490 AT2G23980.4 39.587 581 312 12 190 747 103 667 1.96e-123 387
Msa0961490 AT2G23980.5 39.587 581 312 12 190 747 103 667 1.96e-123 387
Msa0961490 AT5G57940.3 39.138 580 315 13 190 747 81 644 1.02e-122 384
Msa0961490 AT5G57940.1 39.138 580 315 13 190 747 88 651 1.24e-122 384
Msa0961490 AT5G57940.2 39.138 580 315 13 190 747 88 651 1.24e-122 384
Msa0961490 AT2G23980.3 38.245 604 311 13 190 747 103 690 1.04e-118 375
Msa0961490 AT2G23980.2 38.245 604 311 13 190 747 103 690 1.04e-118 375
Msa0961490 AT2G23980.8 38.245 604 311 13 190 747 103 690 1.04e-118 375
Msa0961490 AT2G23980.7 38.245 604 311 13 190 747 103 690 1.04e-118 375
Msa0961490 AT2G46430.1 37.099 593 332 15 190 757 72 648 1.35e-116 368
Msa0961490 AT2G46430.2 37.099 593 332 15 190 757 72 648 1.35e-116 368
Msa0961490 AT5G14870.1 36.644 584 323 14 190 747 40 602 2.19e-116 367
Msa0961490 AT3G48010.1 35.922 618 351 16 157 749 16 613 4.08e-116 367
Msa0961490 AT5G15410.1 36.505 578 328 10 190 741 113 677 4.95e-100 325
Msa0961490 AT5G15410.2 36.505 578 328 10 190 741 112 676 5.95e-100 325
Msa0961490 AT5G54250.2 33.503 588 347 15 190 749 79 650 9.21e-99 321
Msa0961490 AT5G54250.1 33.503 588 347 15 190 749 79 650 9.21e-99 321
Msa0961490 AT5G54250.4 33.503 588 347 15 190 749 79 650 9.21e-99 321
Msa0961490 AT5G54250.3 33.220 587 345 15 190 749 79 645 1.36e-96 315
Msa0961490 AT1G19780.2 40.821 463 239 13 306 747 2 450 2.99e-95 307
Msa0961490 AT2G46450.4 31.749 589 343 16 196 756 35 592 5.56e-88 291
Msa0961490 AT2G46450.1 31.749 589 343 16 196 756 35 592 5.56e-88 291
Msa0961490 AT2G46440.1 32.441 598 342 16 196 757 35 606 2.36e-86 286
Msa0961490 AT2G46450.3 31.409 589 322 18 196 756 22 556 9.07e-80 268
Msa0961490 AT2G46450.2 31.409 589 322 18 196 756 35 569 1.27e-79 268
Msa0961490 AT2G46440.2 34.932 438 228 14 355 757 13 428 3.79e-60 210

Find 179 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCCACAATTCTCTTTA+TGG 0.076169 6_3:+83247983 Msa0961490:intron
ACATTGAAATCCTTGGAAAT+TGG 0.234147 6_3:+83253126 Msa0961490:three_prime_UTR
TTCTGCTCTTCATGTATTCC+TGG 0.236305 6_3:+83248040 Msa0961490:CDS
AATATGTGTATGCACTCTTT+TGG 0.256005 6_3:+83249949 Msa0961490:CDS
TAGAATAGTGGTATGCTTAT+AGG 0.263460 6_3:+83253151 Msa0961490:three_prime_UTR
TTCTATTCCTATGGCTTCTC+TGG 0.264019 6_3:+83247345 Msa0961490:CDS
CACTTGCAGCAAACAGAATT+CGG 0.265972 6_3:+83253000 Msa0961490:CDS
GAGTCAAGGGTTGTTGGTGC+TGG 0.301405 6_3:+83248633 Msa0961490:CDS
GTTTATTGTGCGCGGAAAAT+TGG 0.301601 6_3:+83252079 Msa0961490:CDS
GGTTCATGCTGGTACCTCTT+TGG 0.308329 6_3:+83249153 Msa0961490:CDS
ATGTCTGTCTGGAGATCTTC+TGG 0.319596 6_3:-83251601 None:intergenic
TGAAAAGGATTTCCAGTTGC+AGG 0.328009 6_3:-83247469 None:intergenic
TGAACAATCTGGGAATATAT+TGG 0.331276 6_3:-83249020 None:intergenic
GCTTACCAGAAGATCTTAAA+AGG 0.333332 6_3:+83251389 Msa0961490:CDS
ATACAGACGACATACATTAA+AGG 0.335319 6_3:+83252014 Msa0961490:CDS
CAAAACTTTCTTCAGGCTCT+TGG 0.335864 6_3:+83251073 Msa0961490:CDS
GGACCACTCATTTGGCTAAC+AGG 0.342078 6_3:-83247433 None:intergenic
AAGGGGCGTTCCTGAGAAAA+TGG 0.343981 6_3:+83251564 Msa0961490:CDS
CCAGTATGTCCGACAAGATT+TGG 0.344589 6_3:-83247385 None:intergenic
TATGGCGACGCCAAAGGATA+TGG 0.349584 6_3:+83248001 Msa0961490:CDS
AGAATAGTGGTATGCTTATA+GGG 0.352341 6_3:+83253152 Msa0961490:three_prime_UTR
ACAACAATGGAACAAGGTTT+TGG 0.354062 6_3:+83248090 Msa0961490:CDS
CTGGTACCTCTTTGGCCTAC+AGG 0.356505 6_3:+83249161 Msa0961490:CDS
AATTGCGACCAAGCAAAATA+TGG 0.356880 6_3:-83248113 None:intergenic
TTAGGTATGAATCACCTTAC+TGG 0.364609 6_3:+83252973 Msa0961490:intron
AGATTTGGTTGTCTCTCATA+TGG 0.366724 6_3:-83247370 None:intergenic
TGCTTCAATTTCTATTCCTA+TGG 0.379875 6_3:+83247336 Msa0961490:CDS
TTTATCCTACCAAGTTCCTT+GGG 0.382855 6_3:+83248946 Msa0961490:CDS
CCAAGTTCCTTGGGGTCATC+AGG 0.385649 6_3:+83248955 Msa0961490:CDS
CGTTCCTGAGAAAATGGTTC+TGG 0.387726 6_3:+83251570 Msa0961490:CDS
ATTCACTACATTGAAATCCT+TGG 0.389317 6_3:+83253119 Msa0961490:three_prime_UTR
CGATGCATGGATCCAGGATC+AGG 0.389399 6_3:+83249830 Msa0961490:CDS
CTCTTTACAATGTCCATCAT+AGG 0.393451 6_3:+83251010 Msa0961490:CDS
AAACATACAAAACTTTCTTC+AGG 0.393913 6_3:+83251066 Msa0961490:CDS
CATATAATGGACCACTCATT+TGG 0.395482 6_3:-83247441 None:intergenic
TGAAGAATTCAAACAATCAT+TGG 0.398668 6_3:-83249856 None:intergenic
AGTCAAGGGTTGTTGGTGCT+GGG 0.402836 6_3:+83248634 Msa0961490:CDS
ATTTATCCTACCAAGTTCCT+TGG 0.403214 6_3:+83248945 Msa0961490:CDS
GAGGGTTAACCAATGTTTGC+GGG 0.406787 6_3:+83249749 Msa0961490:intron
CATCGATATATTTATCATGA+TGG 0.413555 6_3:-83253261 None:intergenic
TAGGTTCATCCTCAGCCATC+AGG 0.416717 6_3:-83251965 None:intergenic
TTGCGGAGCCCTCGTGTTCA+AGG 0.418034 6_3:+83252436 Msa0961490:CDS
CGTCGGAGAGGATGGAATTC+CGG 0.422155 6_3:+83252106 Msa0961490:CDS
TACAATGTCCATCATAGGAT+TGG 0.422433 6_3:+83251015 Msa0961490:CDS
TCACGAATGGCGTCTAAGAT+AGG 0.425724 6_3:-83251984 None:intergenic
TGTTGTATCACCTCTTCCTC+AGG 0.425740 6_3:+83248725 Msa0961490:CDS
ATCTGGGAATATATTGGATA+AGG 0.426709 6_3:-83249014 None:intergenic
AGGAAGTAAAATTCTCAGTC+AGG 0.426764 6_3:+83252034 Msa0961490:CDS
GATTGTTTGAATTCTTCATC+TGG 0.430611 6_3:+83249861 Msa0961490:CDS
AATCATTGGAGCCCTGATCC+TGG 0.432839 6_3:-83249842 None:intergenic
TCTCCTGAGTCAAGGGTTGT+TGG 0.433479 6_3:+83248627 Msa0961490:CDS
GTTGCAGGAGTAGCATATAA+TGG 0.434617 6_3:-83247454 None:intergenic
CCAAATCTTGTCGGACATAC+TGG 0.435955 6_3:+83247385 Msa0961490:CDS
TTCGGGTTGCATGGAGATAT+AGG 0.440590 6_3:+83253018 Msa0961490:CDS
ACTATTATATTATTCTGAAA+AGG 0.441915 6_3:-83247484 None:intergenic
GATTCATATTCGAGTCAGCC+TGG 0.449287 6_3:+83249079 Msa0961490:CDS
TCCCACTATATTTGATCCTA+AGG 0.449902 6_3:+83247675 Msa0961490:CDS
CCTGATGACCCCAAGGAACT+TGG 0.451927 6_3:-83248955 None:intergenic
TACCTTAGGATCAAATATAG+TGG 0.452744 6_3:-83247677 None:intergenic
TCAAATATAGTGGGAGCTCT+TGG 0.453330 6_3:-83247667 None:intergenic
TTATATGCTACTCCTGCAAC+TGG 0.455570 6_3:+83247457 Msa0961490:CDS
ACAATGTCCATCATAGGATT+GGG 0.458826 6_3:+83251016 Msa0961490:CDS
CAGAATAATATAATAGTGGC+AGG 0.459304 6_3:+83247490 Msa0961490:CDS
TCCCCTTCTGATAACGGAAC+CGG 0.459445 6_3:-83252125 None:intergenic
AATGAACACTTGTTAAGGTC+TGG 0.463846 6_3:+83247571 Msa0961490:CDS
GTCAGGCTGAACGGTATAGT+TGG 0.464869 6_3:+83251533 Msa0961490:CDS
CTTATGTTTCTCCTGAGTCA+AGG 0.468126 6_3:+83248619 Msa0961490:CDS
TAGTGGCAGGAAACAAAGTA+AGG 0.472364 6_3:+83247503 Msa0961490:CDS
CTTCTTACTCTATGTGGAGA+AGG 0.474707 6_3:+83248156 Msa0961490:CDS
TTATGTTTCTCCTGAGTCAA+GGG 0.478763 6_3:+83248620 Msa0961490:CDS
ATGCTATCCGGCCATGTTGG+TGG 0.482330 6_3:+83249132 Msa0961490:CDS
TTGGAGAGCGTCGGAGAGGA+TGG 0.482934 6_3:+83252098 Msa0961490:CDS
TCTCTTGAACATTCTTCTCC+AGG 0.489405 6_3:+83248370 Msa0961490:CDS
CCACGTGTTTCTGACAGAAT+CGG 0.491947 6_3:-83247253 None:intergenic
GTAGGGCAAGTAGTACAATA+AGG 0.498528 6_3:-83247616 None:intergenic
CTAATTGGTCAGTCTCCAAC+CGG 0.500012 6_3:+83249057 Msa0961490:CDS
TATTAACAAATTTGAAGAGA+TGG 0.500683 6_3:-83251630 None:intergenic
GTCATGCAGGAGAGTACGTC+AGG 0.504709 6_3:+83251516 Msa0961490:intron
CAAGCATCCCCTTCTGATAA+CGG 0.505912 6_3:-83252131 None:intergenic
TGGAAATTGGAATAGAATAG+TGG 0.507358 6_3:+83253139 Msa0961490:three_prime_UTR
GTATAGTTGGGCTGCAACAA+GGG 0.508166 6_3:+83251546 Msa0961490:CDS
ATTTATAATGAAATTTGCCC+AGG 0.509046 6_3:-83249097 None:intergenic
AAGATATATACCTGAGGAAG+AGG 0.510516 6_3:-83248735 None:intergenic
GGCTGACTCGAATATGAATC+CGG 0.516192 6_3:-83249076 None:intergenic
CTATTCTATTCCAATTTCCA+AGG 0.518457 6_3:-83253136 None:intergenic
TTATAACGATGCATGGATCC+AGG 0.520942 6_3:+83249824 Msa0961490:CDS
GATGGCGCCTTATGTCTGTC+TGG 0.521052 6_3:-83251612 None:intergenic
ACTTGCAGCAAACAGAATTC+GGG 0.521184 6_3:+83253001 Msa0961490:CDS
TGAGCAACTTTGAAGTAAGT+AGG 0.522470 6_3:-83247634 None:intergenic
TCAGGCTGAACGGTATAGTT+GGG 0.522851 6_3:+83251534 Msa0961490:CDS
AAACATTAGAGTAGAGCCTA+TGG 0.525053 6_3:-83253095 None:intergenic
AAAATAAAGCTTCATGGACA+GGG 0.525285 6_3:+83252313 Msa0961490:CDS
GTCAAGGGTTGTTGGTGCTG+GGG 0.527130 6_3:+83248635 Msa0961490:CDS
ATTGTCATTATAACGATGCA+TGG 0.527459 6_3:+83249817 Msa0961490:CDS
CCTCGATATGTTTCTTCGAA+AGG 0.527533 6_3:-83247305 None:intergenic
TTGTTAAGGTCTGGACAACT+AGG 0.527946 6_3:+83247580 Msa0961490:CDS
GCAGCGTTATAAATTCCATA+AGG 0.528890 6_3:-83249891 None:intergenic
GAGAGACAACCAAATCTTGT+CGG 0.529593 6_3:+83247376 Msa0961490:CDS
CAAACAGAATTCGGGTTGCA+TGG 0.530459 6_3:+83253009 Msa0961490:CDS
CAGCAAATCAGTACTCTGGC+TGG 0.530631 6_3:+83250953 Msa0961490:intron
ACCCTAGTTTCTATCGTAAG+TGG 0.530830 6_3:-83249918 None:intergenic
GCCATGTTGGTGGTTCATGC+TGG 0.532664 6_3:+83249142 Msa0961490:CDS
GGTATAGTTGGGCTGCAACA+AGG 0.533253 6_3:+83251545 Msa0961490:CDS
CTCGTGTTCAAGGAGTTATA+AGG 0.533997 6_3:+83252446 Msa0961490:CDS
TGTTGTACAACCTTCGCGTG+AGG 0.535852 6_3:-83248073 None:intergenic
AGAGGGTTAACCAATGTTTG+CGG 0.537367 6_3:+83249748 Msa0961490:intron
TATAGAGTTATAAAGTAGCT+AGG 0.537563 6_3:+83253202 Msa0961490:three_prime_UTR
CAAGAGTCCCAATCCTATGA+TGG 0.538094 6_3:-83251023 None:intergenic
ACAGCGATCTGATGAACCTC+AGG 0.545625 6_3:+83247276 Msa0961490:CDS
AAGATCTCCAGACAGACATA+AGG 0.546842 6_3:+83251605 Msa0961490:CDS
GGGTGGTCTTGTACAGAAGA+TGG 0.547676 6_3:+83252055 Msa0961490:CDS
GGCAGGCATCCCGCAAACAT+TGG 0.547918 6_3:-83249758 None:intergenic
TACTCACCTGTAGGCCAAAG+AGG 0.550263 6_3:-83249167 None:intergenic
GACTCGAATATGAATCCGGT+TGG 0.550956 6_3:-83249072 None:intergenic
GAGCAACTTTGAAGTAAGTA+GGG 0.552043 6_3:-83247633 None:intergenic
TACCACTTACGATAGAAACT+AGG 0.552629 6_3:+83249916 Msa0961490:CDS
ACCTTAGGATCAAATATAGT+GGG 0.553778 6_3:-83247676 None:intergenic
TCCGGTTCCGTTATCAGAAG+GGG 0.560727 6_3:+83252124 Msa0961490:CDS
GTTGTACAACCTTCGCGTGA+GGG 0.564009 6_3:-83248072 None:intergenic
GCATGAACCACCAACATGGC+CGG 0.564885 6_3:-83249139 None:intergenic
ATTCCGGTTCCGTTATCAGA+AGG 0.567052 6_3:+83252122 Msa0961490:CDS
TCTCTTTATGGCGACGCCAA+AGG 0.568223 6_3:+83247995 Msa0961490:CDS
ACTTCCCACACAAAATAGCT+TGG 0.569266 6_3:-83250986 None:intergenic
TTATCAAACATTGATGCCAT+AGG 0.570396 6_3:+83253079 Msa0961490:CDS
GTCAAGAATCTTCTACGTCT+AGG 0.570401 6_3:+83248988 Msa0961490:CDS
ACTTTCTTCAGGCTCTTGGA+CGG 0.572535 6_3:+83251077 Msa0961490:CDS
TTTATGCTATCCGGCCATGT+TGG 0.572566 6_3:+83249129 Msa0961490:CDS
GGAAGTAAAATTCTCAGTCA+GGG 0.572657 6_3:+83252035 Msa0961490:CDS
GCACCAACAACCCTTGACTC+AGG 0.578857 6_3:-83248630 None:intergenic
GCTGCAAGTGATCTCCAGTA+AGG 0.578938 6_3:-83252987 None:intergenic
CTTCTTCAATGTCTTTAGCA+CGG 0.579605 6_3:-83252390 None:intergenic
CTGTATTAGTCTCTCACGAA+TGG 0.579807 6_3:-83251997 None:intergenic
AATGCAGCAAATCAGTACTC+TGG 0.581752 6_3:+83250949 Msa0961490:intron
AGTTAGATTAGTACGATGGC+AGG 0.586447 6_3:-83249775 None:intergenic
TTCTTCAGGCTCTTGGACGG+AGG 0.589094 6_3:+83251080 Msa0961490:CDS
ATTCATATTCGAGTCAGCCT+GGG 0.590159 6_3:+83249080 Msa0961490:CDS
GGAGAGTACGTCAGGCTGAA+CGG 0.591154 6_3:+83251524 Msa0961490:intron
GTGGTGAAGAACTTCTAAGA+TGG 0.591370 6_3:+83252153 Msa0961490:CDS
CGCGGAAAATTGGAGAGCGT+CGG 0.592386 6_3:+83252089 Msa0961490:CDS
AGGTTCATCCTCAGCCATCA+GGG 0.592897 6_3:-83251964 None:intergenic
GATCTTCTGGTAAGCGACGA+TGG 0.594933 6_3:-83251381 None:intergenic
CGTCGCCATAAAGAGAATTG+TGG 0.595293 6_3:-83247988 None:intergenic
CTTCGAAAGGTAGAGTCCTG+AGG 0.602315 6_3:-83247292 None:intergenic
ACCACTTACGATAGAAACTA+GGG 0.602596 6_3:+83249917 Msa0961490:CDS
TTCCGGTTCCGTTATCAGAA+GGG 0.604864 6_3:+83252123 Msa0961490:CDS
GCGTGAGGGTTCATAACACC+AGG 0.607336 6_3:-83248058 None:intergenic
CAAGTGTTGTTGCCATTGCG+TGG 0.607532 6_3:-83248316 None:intergenic
TATAGTTGGGCTGCAACAAG+GGG 0.611233 6_3:+83251547 Msa0961490:CDS
AGGGTAGAAATGCAACTTAG+AGG 0.611605 6_3:+83251334 Msa0961490:CDS
GATGCATGGATCCAGGATCA+GGG 0.616800 6_3:+83249831 Msa0961490:CDS
TATGGATCCAGAGAAGCCAT+AGG 0.617794 6_3:-83247352 None:intergenic
CTTATAACTCCTTGAACACG+AGG 0.618090 6_3:-83252445 None:intergenic
TATTCGAATCAACCACGCAA+TGG 0.622474 6_3:+83248304 Msa0961490:CDS
GAACAGTCTTCTGAAAGCAA+AGG 0.627118 6_3:+83252182 Msa0961490:CDS
CTGGTCCGCTTCGTACCACA+AGG 0.629289 6_3:+83247404 Msa0961490:CDS
AGTGGCAGGAAACAAAGTAA+GGG 0.630420 6_3:+83247504 Msa0961490:CDS
TTATCAGAAGGGGATGCTTG+TGG 0.631551 6_3:+83252134 Msa0961490:CDS
ATGACCCCAAGGAACTTGGT+AGG 0.631622 6_3:-83248951 None:intergenic
TGTTATGAACCCTCACGCGA+AGG 0.636579 6_3:+83248063 Msa0961490:CDS
ACGCGAAGGTTGTACAACAA+TGG 0.638155 6_3:+83248077 Msa0961490:CDS
AAGATGGTGTTTATTGTGCG+CGG 0.642824 6_3:+83252071 Msa0961490:CDS
TTATCCTACCAAGTTCCTTG+GGG 0.643481 6_3:+83248947 Msa0961490:CDS
AGTAAGATGCTTAACCAATG+TGG 0.646548 6_3:+83252354 Msa0961490:CDS
ACCAGCATGAACCACCAACA+TGG 0.650102 6_3:-83249143 None:intergenic
ATTTGCTCCTGATGACCCCA+AGG 0.652468 6_3:-83248962 None:intergenic
GAGTGAAAATGCCTCCACAT+TGG 0.657412 6_3:-83252368 None:intergenic
GGTTGTACAACAATGGAACA+AGG 0.662884 6_3:+83248084 Msa0961490:CDS
AAGATGCTTAACCAATGTGG+AGG 0.669911 6_3:+83252357 Msa0961490:CDS
AAAATTGGAGAGCGTCGGAG+AGG 0.670849 6_3:+83252094 Msa0961490:CDS
GAGGTCGTGATGTTGAGCAA+TGG 0.676062 6_3:+83251353 Msa0961490:CDS
ATGCAGTTAGATTAGTACGA+TGG 0.682323 6_3:-83249779 None:intergenic
GGAGACTGACCAATTAGCAG+AGG 0.684915 6_3:-83249051 None:intergenic
CCGATTCTGTCAGAAACACG+TGG 0.688656 6_3:+83247253 Msa0961490:CDS
ACTCCTGTTAGCCAAATGAG+TGG 0.689485 6_3:+83247430 Msa0961490:CDS
AGTAAAATTCTCAGTCAGGG+TGG 0.692049 6_3:+83252038 Msa0961490:CDS
GAAGAAACATATCGAGGACA+CGG 0.705628 6_3:+83247311 Msa0961490:CDS
CCTTTCGAAGAAACATATCG+AGG 0.734304 6_3:+83247305 Msa0961490:CDS
ACTTACGATAGAAACTAGGG+TGG 0.738390 6_3:+83249920 Msa0961490:CDS
TTATAACTCCTTGAACACGA+GGG 0.753036 6_3:-83252444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATATTTTTAAAAAA+AGG - chr6_3:83247798-83247817 None:intergenic 0.0%
!! ATGTATATTTGAAAATAATT+TGG + chr6_3:83250483-83250502 Msa0961490:intron 10.0%
!!! AATTTGATTTAAAACATTAT+AGG - chr6_3:83251744-83251763 None:intergenic 10.0%
!! TATAAATAGGATAATATAAA+TGG - chr6_3:83251890-83251909 None:intergenic 10.0%
!!! ACTATTATATTATTCTGAAA+AGG - chr6_3:83247487-83247506 None:intergenic 15.0%
!!! TTTTCAGAATAATATAATAG+TGG + chr6_3:83247486-83247505 Msa0961490:CDS 15.0%
!! ATATAAAAGTCTATTACTTT+AGG - chr6_3:83247711-83247730 None:intergenic 15.0%
!! ATTAAGCATAGTATTTATTA+AGG - chr6_3:83248813-83248832 None:intergenic 15.0%
!! ACAAGAAAATTCAAATAATT+TGG + chr6_3:83250286-83250305 Msa0961490:intron 15.0%
!!! TTTGAAAATAATTTGGATTT+TGG + chr6_3:83250490-83250509 Msa0961490:intron 15.0%
!!! TATCAAGATTTTAAAATGAA+AGG - chr6_3:83251289-83251308 None:intergenic 15.0%
!! ATTAAGTCATCATTATAAAT+AGG - chr6_3:83251903-83251922 None:intergenic 15.0%
!!! ATAAAAATGAACACTTGTTA+AGG + chr6_3:83247566-83247585 Msa0961490:CDS 20.0%
!! AAACATGAAAAATGTATGAT+TGG - chr6_3:83247953-83247972 None:intergenic 20.0%
!! ATTCTATCAATAGATGTTTA+AGG - chr6_3:83248403-83248422 None:intergenic 20.0%
!! AAAATTATAAGATCAACCAT+TGG - chr6_3:83248452-83248471 None:intergenic 20.0%
!!! TAATTAACAGCTATTTTCTT+GGG - chr6_3:83248675-83248694 None:intergenic 20.0%
!! TTTAATGCTTCTGATTAATA+AGG + chr6_3:83249326-83249345 Msa0961490:intron 20.0%
!! TTGAATAAACAACTTGATTA+GGG - chr6_3:83249552-83249571 None:intergenic 20.0%
!! TTTGAATAAACAACTTGATT+AGG - chr6_3:83249553-83249572 None:intergenic 20.0%
!!! TTGAATGCTTTAAATAAGAA+TGG + chr6_3:83249637-83249656 Msa0961490:intron 20.0%
!! TTAATTCAGTAAATGAATGT+TGG + chr6_3:83249679-83249698 Msa0961490:intron 20.0%
!! TAATTCAGTAAATGAATGTT+GGG + chr6_3:83249680-83249699 Msa0961490:intron 20.0%
!! TGAAGATAAACAATGTAAAT+TGG + chr6_3:83250144-83250163 Msa0961490:intron 20.0%
!! AAATATACATCTGAAAATTG+TGG - chr6_3:83250436-83250455 None:intergenic 20.0%
!! GTATATTTGAACAAAAATTG+TGG + chr6_3:83250448-83250467 Msa0961490:intron 20.0%
!!! AAAATAATTTGGATTTTGGA+TGG + chr6_3:83250494-83250513 Msa0961490:intron 20.0%
!! ATTTCAACATTTGAAAATCA+TGG + chr6_3:83250537-83250556 Msa0961490:intron 20.0%
!! AAAATGGTATAAATGTGATT+TGG - chr6_3:83250772-83250791 None:intergenic 20.0%
!! TAAAGATCAATGTGTATAAT+TGG - chr6_3:83250930-83250949 None:intergenic 20.0%
!! TTTATGTTTACGTTAATTGT+TGG + chr6_3:83251122-83251141 Msa0961490:intron 20.0%
!! TAAACAGAAGTTAATTTAGA+AGG - chr6_3:83251261-83251280 None:intergenic 20.0%
!! AAACGCATCTATTTAAATAA+TGG + chr6_3:83251457-83251476 Msa0961490:intron 20.0%
!! TATTAACAAATTTGAAGAGA+TGG - chr6_3:83251633-83251652 None:intergenic 20.0%
!!! TTAAGTCGATTTTATTTATC+TGG + chr6_3:83251688-83251707 Msa0961490:intron 20.0%
!! TATGAAAATATGTATTCAAG+TGG - chr6_3:83252821-83252840 None:intergenic 20.0%
!! ATATCTTATCTCATCAAATA+TGG + chr6_3:83252838-83252857 Msa0961490:intron 20.0%
!! TATCTTATCTCATCAAATAT+GGG + chr6_3:83252839-83252858 Msa0961490:intron 20.0%
!!! CTTCTAATGGTTTTAGATAT+TGG + chr6_3:83246716-83246735 Msa0961490:intron 25.0%
!! CAAGTGATCTTTTATTAAGA+TGG - chr6_3:83246754-83246773 None:intergenic 25.0%
!!! ATTTTTTGCTATTAACCCAA+CGG + chr6_3:83246928-83246947 Msa0961490:intron 25.0%
!!! AGCTTTACTTTTGTTTTCAA+TGG + chr6_3:83247849-83247868 Msa0961490:intron 25.0%
! TAGAGTAAGAAGAAAAATAG+CGG - chr6_3:83248148-83248167 None:intergenic 25.0%
!! ATTTTTCTTCTTACTCTATG+TGG + chr6_3:83248150-83248169 Msa0961490:CDS 25.0%
! AAAGTAATGTAAAATGATGC+TGG - chr6_3:83248218-83248237 None:intergenic 25.0%
! TAAACTGCAAAAAAGGAAAT+TGG - chr6_3:83248593-83248612 None:intergenic 25.0%
!!! AATTTCCTTTTTTGCAGTTT+AGG + chr6_3:83248592-83248611 Msa0961490:intron 25.0%
!!! GTAATTAACAGCTATTTTCT+TGG - chr6_3:83248676-83248695 None:intergenic 25.0%
! TTAACGATATGTATTTGACA+TGG + chr6_3:83248844-83248863 Msa0961490:intron 25.0%
! ATTTATAATGAAATTTGCCC+AGG - chr6_3:83249100-83249119 None:intergenic 25.0%
!! ATCAAGTTGTTTATTCAAAC+AGG + chr6_3:83249554-83249573 Msa0961490:intron 25.0%
!! TCAAGTTGTTTATTCAAACA+GGG + chr6_3:83249555-83249574 Msa0961490:intron 25.0%
! TGCAACATATTATCATAGTA+TGG - chr6_3:83249581-83249600 None:intergenic 25.0%
! TGAAGAATTCAAACAATCAT+TGG - chr6_3:83249859-83249878 None:intergenic 25.0%
! TATTCACAGCTCAATATTAT+AGG - chr6_3:83250038-83250057 None:intergenic 25.0%
! AAACAAGGTTTAAAAGTAAG+AGG + chr6_3:83250239-83250258 Msa0961490:intron 25.0%
!!! TGTGTTATTTTGACACAAAA+TGG + chr6_3:83250262-83250281 Msa0961490:intron 25.0%
! TTTAACACAGTTCAAATACA+TGG + chr6_3:83250312-83250331 Msa0961490:intron 25.0%
! GATGGTTAATGAATTTAACA+AGG - chr6_3:83250618-83250637 None:intergenic 25.0%
!! TTTTCCTCCTTTTATGTAAA+AGG + chr6_3:83250688-83250707 Msa0961490:intron 25.0%
!! ATTTCCTTTTACATAAAAGG+AGG - chr6_3:83250695-83250714 None:intergenic 25.0%
!! CCTATTTCCTTTTACATAAA+AGG - chr6_3:83250698-83250717 None:intergenic 25.0%
!! CCTTTTATGTAAAAGGAAAT+AGG + chr6_3:83250695-83250714 Msa0961490:intron 25.0%
! TGCATATGAAAATTAAAACG+AGG - chr6_3:83250743-83250762 None:intergenic 25.0%
! AAACATACAAAACTTTCTTC+AGG + chr6_3:83251066-83251085 Msa0961490:CDS 25.0%
!! GATTTTGAACGAATCATTTT+TGG + chr6_3:83251194-83251213 Msa0961490:intron 25.0%
! TACATATAATGTACAACTGA+TGG + chr6_3:83251482-83251501 Msa0961490:intron 25.0%
!! TTTTCTCATTCAACTTCTAT+TGG - chr6_3:83251804-83251823 None:intergenic 25.0%
! GGTAAAAAAATAAAGCTTCA+TGG + chr6_3:83252307-83252326 Msa0961490:CDS 25.0%
! AATGCAGTTGAATCATAAAA+GGG - chr6_3:83252537-83252556 None:intergenic 25.0%
! AAATGCAGTTGAATCATAAA+AGG - chr6_3:83252538-83252557 None:intergenic 25.0%
! TTTATGATTCAACTGCATTT+CGG + chr6_3:83252538-83252557 Msa0961490:intron 25.0%
! AGAATGTGTTTATAAGTGAT+GGG - chr6_3:83252624-83252643 None:intergenic 25.0%
! TAACTCAACCATTAAAAAAC+CGG + chr6_3:83252766-83252785 Msa0961490:intron 25.0%
! AAAATATGTATTCAAGTGGT+AGG - chr6_3:83252817-83252836 None:intergenic 25.0%
! ACATGTAAATAGCATACTTT+AGG - chr6_3:83252896-83252915 None:intergenic 25.0%
!!! TGTTTGATAATCATTTTGAG+TGG - chr6_3:83253069-83253088 None:intergenic 25.0%
! TATAGAGTTATAAAGTAGCT+AGG + chr6_3:83253202-83253221 Msa0961490:three_prime_UTR 25.0%
! CATCGATATATTTATCATGA+TGG - chr6_3:83253264-83253283 None:intergenic 25.0%
! ATCTAAAACCATTAGAAGCA+TGG - chr6_3:83246714-83246733 None:intergenic 30.0%
! ATCCTGACTTGAATAATCAT+TGG - chr6_3:83247001-83247020 None:intergenic 30.0%
TAATGAGCTTCAATTAAGGA+TGG - chr6_3:83247049-83247068 None:intergenic 30.0%
TGGTTAATGAGCTTCAATTA+AGG - chr6_3:83247053-83247072 None:intergenic 30.0%
AATTCAACTCAACTTCAAAG+GGG - chr6_3:83247122-83247141 None:intergenic 30.0%
CAATTCAACTCAACTTCAAA+GGG - chr6_3:83247123-83247142 None:intergenic 30.0%
!! TCATTTTAACATTGCTGAGA+TGG + chr6_3:83247150-83247169 Msa0961490:intron 30.0%
TGCTTCAATTTCTATTCCTA+TGG + chr6_3:83247336-83247355 Msa0961490:CDS 30.0%
CAGAATAATATAATAGTGGC+AGG + chr6_3:83247490-83247509 Msa0961490:CDS 30.0%
! GAGAAGTTTTCTACATTTGA+TGG + chr6_3:83247538-83247557 Msa0961490:CDS 30.0%
ACCTTAGGATCAAATATAGT+GGG - chr6_3:83247679-83247698 None:intergenic 30.0%
TACCTTAGGATCAAATATAG+TGG - chr6_3:83247680-83247699 None:intergenic 30.0%
TTTAGGAAGAAAGATACCTT+AGG - chr6_3:83247694-83247713 None:intergenic 30.0%
GCACAACTATATGACAAAAA+AGG - chr6_3:83247895-83247914 None:intergenic 30.0%
! AAGTTTTCTTCCATATCCTT+TGG - chr6_3:83248014-83248033 None:intergenic 30.0%
TAATGTAAAATGATGCTGGA+AGG - chr6_3:83248214-83248233 None:intergenic 30.0%
GATGTTTAAGGAAAATTACC+TGG - chr6_3:83248391-83248410 None:intergenic 30.0%
TGGAAACATTTGCATTCAAA+TGG - chr6_3:83248432-83248451 None:intergenic 30.0%
TTGAATGCAAATGTTTCCAA+TGG + chr6_3:83248433-83248452 Msa0961490:intron 30.0%
TTTCTTCCTATAAGCAAAGA+GGG - chr6_3:83248482-83248501 None:intergenic 30.0%
! TTTTCTTCCTATAAGCAAAG+AGG - chr6_3:83248483-83248502 None:intergenic 30.0%
TGTGTCTTGAATCTTAAACA+TGG + chr6_3:83248509-83248528 Msa0961490:intron 30.0%
TGTATTTGACATGGAAGAAA+AGG + chr6_3:83248853-83248872 Msa0961490:intron 30.0%
GTATTTGACATGGAAGAAAA+GGG + chr6_3:83248854-83248873 Msa0961490:intron 30.0%
ATCTGGGAATATATTGGATA+AGG - chr6_3:83249017-83249036 None:intergenic 30.0%
TGAACAATCTGGGAATATAT+TGG - chr6_3:83249023-83249042 None:intergenic 30.0%
! CTTCTGATTTTTATGCTATC+CGG + chr6_3:83249120-83249139 Msa0961490:CDS 30.0%
! CATTTTTATTACTCACCTGT+AGG - chr6_3:83249179-83249198 None:intergenic 30.0%
ATTCATTATGTGAAGATGCA+GGG - chr6_3:83249280-83249299 None:intergenic 30.0%
CTGATTAATAAGGTTACATC+AGG + chr6_3:83249336-83249355 Msa0961490:intron 30.0%
TCAAATAAGTCTAACCAAAC+AGG - chr6_3:83249362-83249381 None:intergenic 30.0%
! TATTATTTCTCTTCTTCCAG+AGG + chr6_3:83249730-83249749 Msa0961490:intron 30.0%
! ATTATTTCTCTTCTTCCAGA+GGG + chr6_3:83249731-83249750 Msa0961490:intron 30.0%
ATTGTCATTATAACGATGCA+TGG + chr6_3:83249817-83249836 Msa0961490:CDS 30.0%
GATTGTTTGAATTCTTCATC+TGG + chr6_3:83249861-83249880 Msa0961490:CDS 30.0%
! AATATGTGTATGCACTCTTT+TGG + chr6_3:83249949-83249968 Msa0961490:CDS 30.0%
! ATATGTGTATGCACTCTTTT+GGG + chr6_3:83249950-83249969 Msa0961490:CDS 30.0%
TAAATTGCAAAATGCATACC+TGG - chr6_3:83249980-83249999 None:intergenic 30.0%
GTTAAGCTGTTTATCTTCAT+TGG - chr6_3:83250088-83250107 None:intergenic 30.0%
TAACGACAACATAACAAAAG+AGG + chr6_3:83250117-83250136 Msa0961490:intron 30.0%
TCATAAGTCATAACCAGTTA+TGG + chr6_3:83250203-83250222 Msa0961490:intron 30.0%
! GGTTAAATACGTTTTGTAGA+TGG + chr6_3:83250333-83250352 Msa0961490:intron 30.0%
CGTTAATTGTATTATGTGCA+TGG - chr6_3:83250393-83250412 None:intergenic 30.0%
TAGTAGTTAATAACGTTGAG+TGG + chr6_3:83250576-83250595 Msa0961490:intron 30.0%
ATGTATGTAATTACGTTCAG+TGG - chr6_3:83250640-83250659 None:intergenic 30.0%
AAGGAGGAAAACAATTTGAT+TGG - chr6_3:83250679-83250698 None:intergenic 30.0%
TATAAAAAAAGGGGAAGACA+AGG + chr6_3:83250804-83250823 Msa0961490:intron 30.0%
TGTTGTCTAATATCATGTCA+AGG + chr6_3:83250854-83250873 Msa0961490:intron 30.0%
GTTGTCTAATATCATGTCAA+GGG + chr6_3:83250855-83250874 Msa0961490:intron 30.0%
TAACTTGAATCAACGCTAAA+AGG + chr6_3:83250879-83250898 Msa0961490:intron 30.0%
!!! TCATACCTTTTAAGATCTTC+TGG - chr6_3:83251397-83251416 None:intergenic 30.0%
TTAACGAATGACATCAACAT+TGG + chr6_3:83251432-83251451 Msa0961490:intron 30.0%
TGATGATCTAACATTTCTAC+AGG + chr6_3:83251929-83251948 Msa0961490:intron 30.0%
ATACAGACGACATACATTAA+AGG + chr6_3:83252014-83252033 Msa0961490:CDS 30.0%
AAAAATAAAGCTTCATGGAC+AGG + chr6_3:83252312-83252331 Msa0961490:CDS 30.0%
AAAATAAAGCTTCATGGACA+GGG + chr6_3:83252313-83252332 Msa0961490:CDS 30.0%
GAGAATGTGTTTATAAGTGA+TGG - chr6_3:83252625-83252644 None:intergenic 30.0%
! ACCATCTTAGAATTTGAGTT+AGG + chr6_3:83252741-83252760 Msa0961490:intron 30.0%
!!! GGTTTTTTAATGGTTGAGTT+AGG - chr6_3:83252767-83252786 None:intergenic 30.0%
AAATCATTATGTCAGAGACA+TGG - chr6_3:83252938-83252957 None:intergenic 30.0%
ATGTCTCTGACATAATGATT+TGG + chr6_3:83252937-83252956 Msa0961490:intron 30.0%
TTTGGTTGTTGTGTTATGTT+AGG + chr6_3:83252955-83252974 Msa0961490:intron 30.0%
TTATCAAACATTGATGCCAT+AGG + chr6_3:83253079-83253098 Msa0961490:CDS 30.0%
ATTCACTACATTGAAATCCT+TGG + chr6_3:83253119-83253138 Msa0961490:three_prime_UTR 30.0%
ACATTGAAATCCTTGGAAAT+TGG + chr6_3:83253126-83253145 Msa0961490:three_prime_UTR 30.0%
CTATTCTATTCCAATTTCCA+AGG - chr6_3:83253139-83253158 None:intergenic 30.0%
TGGAAATTGGAATAGAATAG+TGG + chr6_3:83253139-83253158 Msa0961490:three_prime_UTR 30.0%
TAGAATAGTGGTATGCTTAT+AGG + chr6_3:83253151-83253170 Msa0961490:three_prime_UTR 30.0%
AGAATAGTGGTATGCTTATA+GGG + chr6_3:83253152-83253171 Msa0961490:three_prime_UTR 30.0%
!!! TCGATGAACATTTTGATTCA+AGG + chr6_3:83253278-83253297 Msa0961490:three_prime_UTR 30.0%
GAAAGTCTAATTGACACGTT+TGG + chr6_3:83246681-83246700 Msa0961490:intron 35.0%
ATCATTCTACATTTGACTGC+CGG + chr6_3:83246821-83246840 Msa0961490:intron 35.0%
GATCTTTGTTCTTATCTAGC+CGG - chr6_3:83246843-83246862 None:intergenic 35.0%
GTCCAATGATTATTCAAGTC+AGG + chr6_3:83246996-83247015 Msa0961490:intron 35.0%
ATTCAACTCAACTTCAAAGG+GGG - chr6_3:83247121-83247140 None:intergenic 35.0%
CCAATTCAACTCAACTTCAA+AGG - chr6_3:83247124-83247143 None:intergenic 35.0%
!! CCTTTGAAGTTGAGTTGAAT+TGG + chr6_3:83247121-83247140 Msa0961490:intron 35.0%
! AGATTTGGTTGTCTCTCATA+TGG - chr6_3:83247373-83247392 None:intergenic 35.0%
!! CATATAATGGACCACTCATT+TGG - chr6_3:83247444-83247463 None:intergenic 35.0%
!! GTTTTCTACATTTGATGGCA+CGG + chr6_3:83247543-83247562 Msa0961490:CDS 35.0%
! AATGAACACTTGTTAAGGTC+TGG + chr6_3:83247571-83247590 Msa0961490:CDS 35.0%
!! GAGCAACTTTGAAGTAAGTA+GGG - chr6_3:83247636-83247655 None:intergenic 35.0%
!! TGAGCAACTTTGAAGTAAGT+AGG - chr6_3:83247637-83247656 None:intergenic 35.0%
TCCCACTATATTTGATCCTA+AGG + chr6_3:83247675-83247694 Msa0961490:CDS 35.0%
CAGTTCCACAATTCTCTTTA+TGG + chr6_3:83247983-83248002 Msa0961490:intron 35.0%
! ACAACAATGGAACAAGGTTT+TGG + chr6_3:83248090-83248109 Msa0961490:CDS 35.0%
AATTGCGACCAAGCAAAATA+TGG - chr6_3:83248116-83248135 None:intergenic 35.0%
!!! TCCTTTTTTGCAGTTTAGGT+TGG + chr6_3:83248596-83248615 Msa0961490:intron 35.0%
TTATGTTTCTCCTGAGTCAA+GGG + chr6_3:83248620-83248639 Msa0961490:CDS 35.0%
!! TAACAGCTATTTTCTTGGGA+TGG - chr6_3:83248671-83248690 None:intergenic 35.0%
AAGATATATACCTGAGGAAG+AGG - chr6_3:83248738-83248757 None:intergenic 35.0%
GATAGGAAGATATATACCTG+AGG - chr6_3:83248744-83248763 None:intergenic 35.0%
AACAAACAACATGGAGAGAT+AGG - chr6_3:83248761-83248780 None:intergenic 35.0%
ATTTATCCTACCAAGTTCCT+TGG + chr6_3:83248945-83248964 Msa0961490:CDS 35.0%
TTTATCCTACCAAGTTCCTT+GGG + chr6_3:83248946-83248965 Msa0961490:CDS 35.0%
GGCAAAAATCTGAACAATCT+GGG - chr6_3:83249033-83249052 None:intergenic 35.0%
AGGCAAAAATCTGAACAATC+TGG - chr6_3:83249034-83249053 None:intergenic 35.0%
! AGATTTTTGCCTCTGCTAAT+TGG + chr6_3:83249042-83249061 Msa0961490:CDS 35.0%
GGTTCTTTGTATTGAATGCA+AGG - chr6_3:83249259-83249278 None:intergenic 35.0%
CATTCATTATGTGAAGATGC+AGG - chr6_3:83249281-83249300 None:intergenic 35.0%
CTGCATCTTCACATAATGAA+TGG + chr6_3:83249279-83249298 Msa0961490:intron 35.0%
!! TATTGACTTGTGAGACTGTT+TGG + chr6_3:83249389-83249408 Msa0961490:intron 35.0%
AATAGGCTCAAAACAACTGA+TGG - chr6_3:83249444-83249463 None:intergenic 35.0%
ATGCAGTTAGATTAGTACGA+TGG - chr6_3:83249782-83249801 None:intergenic 35.0%
GCAGCGTTATAAATTCCATA+AGG - chr6_3:83249894-83249913 None:intergenic 35.0%
TACCACTTACGATAGAAACT+AGG + chr6_3:83249916-83249935 Msa0961490:CDS 35.0%
ACCACTTACGATAGAAACTA+GGG + chr6_3:83249917-83249936 Msa0961490:CDS 35.0%
! TATGTGTATGCACTCTTTTG+GGG + chr6_3:83249951-83249970 Msa0961490:CDS 35.0%
AAGCTGTTTATCTTCATTGG+AGG - chr6_3:83250085-83250104 None:intergenic 35.0%
! TACGTTTTGTAGATGGTTAG+TGG + chr6_3:83250340-83250359 Msa0961490:intron 35.0%
! GATGGTTAGTGGATATAACA+AGG + chr6_3:83250351-83250370 Msa0961490:intron 35.0%
! TGGATTTTGGATGGTTATAG+TGG + chr6_3:83250503-83250522 Msa0961490:intron 35.0%
AGTTAATAACGTTGAGTGGA+TGG + chr6_3:83250580-83250599 Msa0961490:intron 35.0%
ATGTAATTACGTTCAGTGGA+TGG - chr6_3:83250636-83250655 None:intergenic 35.0%
AACGCTAAAAGGCAAATGAA+TGG + chr6_3:83250890-83250909 Msa0961490:intron 35.0%
!! AACAACCAAGCTATTTTGTG+TGG + chr6_3:83250981-83251000 Msa0961490:CDS 35.0%
!! ACAACCAAGCTATTTTGTGT+GGG + chr6_3:83250982-83251001 Msa0961490:CDS 35.0%
CTCTTTACAATGTCCATCAT+AGG + chr6_3:83251010-83251029 Msa0961490:CDS 35.0%
TACAATGTCCATCATAGGAT+TGG + chr6_3:83251015-83251034 Msa0961490:CDS 35.0%
ACAATGTCCATCATAGGATT+GGG + chr6_3:83251016-83251035 Msa0961490:CDS 35.0%
! AAGAGAATGACTTGTGTGTT+TGG - chr6_3:83251237-83251256 None:intergenic 35.0%
! TTTTGTTCCATCCTACTTAC+AGG + chr6_3:83251311-83251330 Msa0961490:intron 35.0%
GCTTACCAGAAGATCTTAAA+AGG + chr6_3:83251389-83251408 Msa0961490:CDS 35.0%
! TTTTCCAGAACCATTTTCTC+AGG - chr6_3:83251577-83251596 None:intergenic 35.0%
ATTGGATTCCAGCAAGTTAT+AGG - chr6_3:83251786-83251805 None:intergenic 35.0%
AGGAAGTAAAATTCTCAGTC+AGG + chr6_3:83252034-83252053 Msa0961490:CDS 35.0%
GGAAGTAAAATTCTCAGTCA+GGG + chr6_3:83252035-83252054 Msa0961490:CDS 35.0%
! GATTGTGACAACTTCTTTTG+AGG - chr6_3:83252238-83252257 None:intergenic 35.0%
! CATCGATTAAACATGGTTTG+AGG - chr6_3:83252270-83252289 None:intergenic 35.0%
CAAACCATGTTTAATCGATG+TGG + chr6_3:83252270-83252289 Msa0961490:intron 35.0%
! GAAACCACATCGATTAAACA+TGG - chr6_3:83252277-83252296 None:intergenic 35.0%
AGTAAGATGCTTAACCAATG+TGG + chr6_3:83252354-83252373 Msa0961490:CDS 35.0%
CTTCTTCAATGTCTTTAGCA+CGG - chr6_3:83252393-83252412 None:intergenic 35.0%
! CTCTTTTCGCAAGATTTTTG+CGG + chr6_3:83252419-83252438 Msa0961490:CDS 35.0%
TTATAACTCCTTGAACACGA+GGG - chr6_3:83252447-83252466 None:intergenic 35.0%
! GTATTGACACAAAGACAACA+GGG - chr6_3:83252499-83252518 None:intergenic 35.0%
!! AGTATTGACACAAAGACAAC+AGG - chr6_3:83252500-83252519 None:intergenic 35.0%
GTGTTCCTAACCTTATATGA+CGG - chr6_3:83252602-83252621 None:intergenic 35.0%
ATTGGGAAAAATCCAAGTCA+AGG - chr6_3:83252651-83252670 None:intergenic 35.0%
!! ACAATAGATTCGGGAGTATT+GGG - chr6_3:83252668-83252687 None:intergenic 35.0%
! TACAATAGATTCGGGAGTAT+TGG - chr6_3:83252669-83252688 None:intergenic 35.0%
GGTGCGTGAATATAAATGAT+GGG + chr6_3:83252692-83252711 Msa0961490:intron 35.0%
! GCCTAACTCAAATTCTAAGA+TGG - chr6_3:83252745-83252764 None:intergenic 35.0%
!!! CTATCAAGCCGGTTTTTTAA+TGG - chr6_3:83252777-83252796 None:intergenic 35.0%
!! CATTAAAAAACCGGCTTGAT+AGG + chr6_3:83252775-83252794 Msa0961490:intron 35.0%
TTAGGTATGAATCACCTTAC+TGG + chr6_3:83252973-83252992 Msa0961490:intron 35.0%
AAACATTAGAGTAGAGCCTA+TGG - chr6_3:83253098-83253117 None:intergenic 35.0%
! GTTTTCGTCCATGCTTCTAA+TGG + chr6_3:83246703-83246722 Msa0961490:intron 40.0%
TTCAAGTCAGGATTTGAACC+CGG + chr6_3:83247008-83247027 Msa0961490:intron 40.0%
CAATTAAGGATGGATCGCTT+AGG - chr6_3:83247039-83247058 None:intergenic 40.0%
AACCACTTGTGCAAATCACT+TGG + chr6_3:83247068-83247087 Msa0961490:intron 40.0%
CCTCGATATGTTTCTTCGAA+AGG - chr6_3:83247308-83247327 None:intergenic 40.0%
CCTTTCGAAGAAACATATCG+AGG + chr6_3:83247305-83247324 Msa0961490:CDS 40.0%
GAAGAAACATATCGAGGACA+CGG + chr6_3:83247311-83247330 Msa0961490:CDS 40.0%
TTCTATTCCTATGGCTTCTC+TGG + chr6_3:83247345-83247364 Msa0961490:CDS 40.0%
GAGAGACAACCAAATCTTGT+CGG + chr6_3:83247376-83247395 Msa0961490:CDS 40.0%
GTTGCAGGAGTAGCATATAA+TGG - chr6_3:83247457-83247476 None:intergenic 40.0%
TTATATGCTACTCCTGCAAC+TGG + chr6_3:83247457-83247476 Msa0961490:CDS 40.0%
TGAAAAGGATTTCCAGTTGC+AGG - chr6_3:83247472-83247491 None:intergenic 40.0%
TAGTGGCAGGAAACAAAGTA+AGG + chr6_3:83247503-83247522 Msa0961490:CDS 40.0%
AGTGGCAGGAAACAAAGTAA+GGG + chr6_3:83247504-83247523 Msa0961490:CDS 40.0%
TTGTTAAGGTCTGGACAACT+AGG + chr6_3:83247580-83247599 Msa0961490:CDS 40.0%
GTAGGGCAAGTAGTACAATA+AGG - chr6_3:83247619-83247638 None:intergenic 40.0%
! TCAAATATAGTGGGAGCTCT+TGG - chr6_3:83247670-83247689 None:intergenic 40.0%
TTCTGCTCTTCATGTATTCC+TGG + chr6_3:83248040-83248059 Msa0961490:CDS 40.0%
GGTTGTACAACAATGGAACA+AGG + chr6_3:83248084-83248103 Msa0961490:CDS 40.0%
!! GGTTTTGGCCATATTTTGCT+TGG + chr6_3:83248105-83248124 Msa0961490:CDS 40.0%
CTTCTTACTCTATGTGGAGA+AGG + chr6_3:83248156-83248175 Msa0961490:CDS 40.0%
TATTCGAATCAACCACGCAA+TGG + chr6_3:83248304-83248323 Msa0961490:CDS 40.0%
TCTCTTGAACATTCTTCTCC+AGG + chr6_3:83248370-83248389 Msa0961490:CDS 40.0%
CTATAAGCAAAGAGGGACTA+AGG - chr6_3:83248475-83248494 None:intergenic 40.0%
CTTAGTCCCTCTTTGCTTAT+AGG + chr6_3:83248473-83248492 Msa0961490:intron 40.0%
GGCTGTCGAATATTATGTCT+AGG + chr6_3:83248530-83248549 Msa0961490:intron 40.0%
GCCAACCTAAACTGCAAAAA+AGG - chr6_3:83248600-83248619 None:intergenic 40.0%
CTTATGTTTCTCCTGAGTCA+AGG + chr6_3:83248619-83248638 Msa0961490:CDS 40.0%
! AACGGTGTCAACAAACAACA+TGG - chr6_3:83248770-83248789 None:intergenic 40.0%
TTATCCTACCAAGTTCCTTG+GGG + chr6_3:83248947-83248966 Msa0961490:CDS 40.0%
GTCAAGAATCTTCTACGTCT+AGG + chr6_3:83248988-83249007 Msa0961490:CDS 40.0%
ATTCATATTCGAGTCAGCCT+GGG + chr6_3:83249080-83249099 Msa0961490:CDS 40.0%
ACTTGTGAGACTGTTTGGAA+CGG + chr6_3:83249394-83249413 Msa0961490:intron 40.0%
GCTGTTTGCATAAGCTATCA+TGG - chr6_3:83249479-83249498 None:intergenic 40.0%
AGAGGGTTAACCAATGTTTG+CGG + chr6_3:83249748-83249767 Msa0961490:intron 40.0%
AGTTAGATTAGTACGATGGC+AGG - chr6_3:83249778-83249797 None:intergenic 40.0%
TTATAACGATGCATGGATCC+AGG + chr6_3:83249824-83249843 Msa0961490:CDS 40.0%
! TCATCTGGTGCTTTTCCTTA+TGG + chr6_3:83249876-83249895 Msa0961490:CDS 40.0%
ACCCTAGTTTCTATCGTAAG+TGG - chr6_3:83249921-83249940 None:intergenic 40.0%
ACTTACGATAGAAACTAGGG+TGG + chr6_3:83249920-83249939 Msa0961490:CDS 40.0%
!! CTCTCGTGCAAAAGTTGATA+TGG + chr6_3:83250175-83250194 Msa0961490:intron 40.0%
AACCAGTTATGGTTGACGAT+AGG + chr6_3:83250214-83250233 Msa0961490:intron 40.0%
TTCCTATCGTCAACCATAAC+TGG - chr6_3:83250219-83250238 None:intergenic 40.0%
GGTTGACGATAGGAAAAACA+AGG + chr6_3:83250224-83250243 Msa0961490:intron 40.0%
AATGCAGCAAATCAGTACTC+TGG + chr6_3:83250949-83250968 Msa0961490:intron 40.0%
ACTTCCCACACAAAATAGCT+TGG - chr6_3:83250989-83251008 None:intergenic 40.0%
!!! TTGCTTTTTGCGCTTCTCAT+TGG + chr6_3:83251043-83251062 Msa0961490:CDS 40.0%
CAAAACTTTCTTCAGGCTCT+TGG + chr6_3:83251073-83251092 Msa0961490:CDS 40.0%
! GTGTGTTTGGTTTCACAGTA+GGG - chr6_3:83251224-83251243 None:intergenic 40.0%
! TGTGTGTTTGGTTTCACAGT+AGG - chr6_3:83251225-83251244 None:intergenic 40.0%
ATTTCTACCCTCCTGTAAGT+AGG - chr6_3:83251325-83251344 None:intergenic 40.0%
AGGGTAGAAATGCAACTTAG+AGG + chr6_3:83251334-83251353 Msa0961490:CDS 40.0%
AAGATCTCCAGACAGACATA+AGG + chr6_3:83251605-83251624 Msa0961490:CDS 40.0%
!!! GGTTCGAATTTTTTCCCTGA+TGG + chr6_3:83251950-83251969 Msa0961490:intron 40.0%
!!! AATTTTTTCCCTGATGGCTG+AGG + chr6_3:83251956-83251975 Msa0961490:CDS 40.0%
! CTGTATTAGTCTCTCACGAA+TGG - chr6_3:83252000-83252019 None:intergenic 40.0%
AGTAAAATTCTCAGTCAGGG+TGG + chr6_3:83252038-83252057 Msa0961490:CDS 40.0%
AAGATGGTGTTTATTGTGCG+CGG + chr6_3:83252071-83252090 Msa0961490:CDS 40.0%
GTTTATTGTGCGCGGAAAAT+TGG + chr6_3:83252079-83252098 Msa0961490:CDS 40.0%
! GTGGTGAAGAACTTCTAAGA+TGG + chr6_3:83252153-83252172 Msa0961490:CDS 40.0%
! GAACAGTCTTCTGAAAGCAA+AGG + chr6_3:83252182-83252201 Msa0961490:CDS 40.0%
AAGATGCTTAACCAATGTGG+AGG + chr6_3:83252357-83252376 Msa0961490:CDS 40.0%
CTTATAACTCCTTGAACACG+AGG - chr6_3:83252448-83252467 None:intergenic 40.0%
CTCGTGTTCAAGGAGTTATA+AGG + chr6_3:83252446-83252465 Msa0961490:CDS 40.0%
CACAAAGACAACAGGGAAAT+GGG - chr6_3:83252492-83252511 None:intergenic 40.0%
ACACAAAGACAACAGGGAAA+TGG - chr6_3:83252493-83252512 None:intergenic 40.0%
!! TGCATTTCGGTGTTGTGTTT+GGG + chr6_3:83252551-83252570 Msa0961490:intron 40.0%
ACTCCCGAATCTATTGTACT+CGG + chr6_3:83252671-83252690 Msa0961490:intron 40.0%
CGGTGCGTGAATATAAATGA+TGG + chr6_3:83252691-83252710 Msa0961490:intron 40.0%
! GCGTGAATATAAATGATGGG+TGG + chr6_3:83252695-83252714 Msa0961490:intron 40.0%
GATGGGTGGTTCAAATCAAT+AGG + chr6_3:83252709-83252728 Msa0961490:intron 40.0%
!! TAAAAAACCGGCTTGATAGG+TGG + chr6_3:83252778-83252797 Msa0961490:intron 40.0%
!! AAAAAACCGGCTTGATAGGT+GGG + chr6_3:83252779-83252798 Msa0961490:intron 40.0%
CACTTGCAGCAAACAGAATT+CGG + chr6_3:83253000-83253019 Msa0961490:CDS 40.0%
ACTTGCAGCAAACAGAATTC+GGG + chr6_3:83253001-83253020 Msa0961490:CDS 40.0%
GTGATGCATTGAGTTCCATC+TGG + chr6_3:83246869-83246888 Msa0961490:intron 45.0%
ATGCTAGTGACAAAGCCAGA+TGG - chr6_3:83246887-83246906 None:intergenic 45.0%
CTATTAACCCAACGGCTCTT+AGG + chr6_3:83246936-83246955 Msa0961490:intron 45.0%
GATTTCTCCTAAGAGCCGTT+GGG - chr6_3:83246946-83246965 None:intergenic 45.0%
AACGGCTCTTAGGAGAAATC+CGG + chr6_3:83246946-83246965 Msa0961490:intron 45.0%
TCAAGTCAGGATTTGAACCC+GGG + chr6_3:83247009-83247028 Msa0961490:intron 45.0%
! GACCAAGTGATTTGCACAAG+TGG - chr6_3:83247073-83247092 None:intergenic 45.0%
! CCACGTGTTTCTGACAGAAT+CGG - chr6_3:83247256-83247275 None:intergenic 45.0%
TATGGATCCAGAGAAGCCAT+AGG - chr6_3:83247355-83247374 None:intergenic 45.0%
CCAGTATGTCCGACAAGATT+TGG - chr6_3:83247388-83247407 None:intergenic 45.0%
CCAAATCTTGTCGGACATAC+TGG + chr6_3:83247385-83247404 Msa0961490:CDS 45.0%
! GTTTTCCTTGTGGTACGAAG+CGG - chr6_3:83247412-83247431 None:intergenic 45.0%
! GCTAACAGGAGTTTTCCTTG+TGG - chr6_3:83247422-83247441 None:intergenic 45.0%
ACTCCTGTTAGCCAAATGAG+TGG + chr6_3:83247430-83247449 Msa0961490:CDS 45.0%
CGTCGCCATAAAGAGAATTG+TGG - chr6_3:83247991-83248010 None:intergenic 45.0%
ACGCGAAGGTTGTACAACAA+TGG + chr6_3:83248077-83248096 Msa0961490:CDS 45.0%
TGTTGTATCACCTCTTCCTC+AGG + chr6_3:83248725-83248744 Msa0961490:CDS 45.0%
! GTTTGTTGACACCGTTACCT+CGG + chr6_3:83248774-83248793 Msa0961490:intron 45.0%
TCAACACAACACCGAGGTAA+CGG - chr6_3:83248788-83248807 None:intergenic 45.0%
CTAATTGGTCAGTCTCCAAC+CGG + chr6_3:83249057-83249076 Msa0961490:CDS 45.0%
GACTCGAATATGAATCCGGT+TGG - chr6_3:83249075-83249094 None:intergenic 45.0%
!! GGCTGACTCGAATATGAATC+CGG - chr6_3:83249079-83249098 None:intergenic 45.0%
GATTCATATTCGAGTCAGCC+TGG + chr6_3:83249079-83249098 Msa0961490:CDS 45.0%
TTTATGCTATCCGGCCATGT+TGG + chr6_3:83249129-83249148 Msa0961490:CDS 45.0%
AAGGTTACATCAGGCCTGTT+TGG + chr6_3:83249345-83249364 Msa0961490:intron 45.0%
! AGACTGTTTGGAACGGCTTA+CGG + chr6_3:83249401-83249420 Msa0961490:intron 45.0%
CATGGAGAGCTCATGGAAAT+AGG - chr6_3:83249461-83249480 None:intergenic 45.0%
AAGCTATCATGGAGAGCTCA+TGG - chr6_3:83249468-83249487 None:intergenic 45.0%
! GCAAACATTGGTTAACCCTC+TGG - chr6_3:83249749-83249768 None:intergenic 45.0%
GAGGGTTAACCAATGTTTGC+GGG + chr6_3:83249749-83249768 Msa0961490:intron 45.0%
CAAGAGTCCCAATCCTATGA+TGG - chr6_3:83251026-83251045 None:intergenic 45.0%
ACTTTCTTCAGGCTCTTGGA+CGG + chr6_3:83251077-83251096 Msa0961490:CDS 45.0%
TGTTCCATCCTACTTACAGG+AGG + chr6_3:83251314-83251333 Msa0961490:intron 45.0%
GTTCCATCCTACTTACAGGA+GGG + chr6_3:83251315-83251334 Msa0961490:intron 45.0%
GGATACGATATCTGTCATGC+AGG + chr6_3:83251503-83251522 Msa0961490:intron 45.0%
TCAGGCTGAACGGTATAGTT+GGG + chr6_3:83251534-83251553 Msa0961490:CDS 45.0%
GTATAGTTGGGCTGCAACAA+GGG + chr6_3:83251546-83251565 Msa0961490:CDS 45.0%
TATAGTTGGGCTGCAACAAG+GGG + chr6_3:83251547-83251566 Msa0961490:CDS 45.0%
CGTTCCTGAGAAAATGGTTC+TGG + chr6_3:83251570-83251589 Msa0961490:CDS 45.0%
ATGTCTGTCTGGAGATCTTC+TGG - chr6_3:83251604-83251623 None:intergenic 45.0%
AAGTTATAGGCAGACGCGTA+GGG - chr6_3:83251773-83251792 None:intergenic 45.0%
! TCACGAATGGCGTCTAAGAT+AGG - chr6_3:83251987-83252006 None:intergenic 45.0%
ATTCCGGTTCCGTTATCAGA+AGG + chr6_3:83252122-83252141 Msa0961490:CDS 45.0%
TTCCGGTTCCGTTATCAGAA+GGG + chr6_3:83252123-83252142 Msa0961490:CDS 45.0%
CAAGCATCCCCTTCTGATAA+CGG - chr6_3:83252134-83252153 None:intergenic 45.0%
TTATCAGAAGGGGATGCTTG+TGG + chr6_3:83252134-83252153 Msa0961490:CDS 45.0%
GATGTGGTTTCTCATGCAGA+AGG + chr6_3:83252286-83252305 Msa0961490:intron 45.0%
GAGTGAAAATGCCTCCACAT+TGG - chr6_3:83252371-83252390 None:intergenic 45.0%
AAGACAACAGGGAAATGGGA+TGG - chr6_3:83252488-83252507 None:intergenic 45.0%
!! CTGCATTTCGGTGTTGTGTT+TGG + chr6_3:83252550-83252569 Msa0961490:intron 45.0%
!! TTTCGGTGTTGTGTTTGGGT+TGG + chr6_3:83252555-83252574 Msa0961490:intron 45.0%
!! TTCGGTGTTGTGTTTGGGTT+GGG + chr6_3:83252556-83252575 Msa0961490:intron 45.0%
CTAACCTTATATGACGGCTC+TGG - chr6_3:83252596-83252615 None:intergenic 45.0%
CAGAGCCGTCATATAAGGTT+AGG + chr6_3:83252594-83252613 Msa0961490:intron 45.0%
CACATTCTCAGACCTTGACT+TGG + chr6_3:83252636-83252655 Msa0961490:intron 45.0%
GCACCGAGTACAATAGATTC+GGG - chr6_3:83252677-83252696 None:intergenic 45.0%
CGCACCGAGTACAATAGATT+CGG - chr6_3:83252678-83252697 None:intergenic 45.0%
TTACTTCCCACCTATCAAGC+CGG - chr6_3:83252788-83252807 None:intergenic 45.0%
!! CAAACAGAATTCGGGTTGCA+TGG + chr6_3:83253009-83253028 Msa0961490:CDS 45.0%
!! TTCGGGTTGCATGGAGATAT+AGG + chr6_3:83253018-83253037 Msa0961490:CDS 45.0%
!! TATAATATTAAATGTTAAAA+TGG - chr6_3:83250788-83250807 None:intergenic 5.0%
!! ACATTTAATATTATAAAAAA+AGG + chr6_3:83250793-83250812 Msa0961490:intron 5.0%
!! CATTTAATATTATAAAAAAA+GGG + chr6_3:83250794-83250813 Msa0961490:intron 5.0%
!! ATTTAATATTATAAAAAAAG+GGG + chr6_3:83250795-83250814 Msa0961490:intron 5.0%
GGATTTCTCCTAAGAGCCGT+TGG - chr6_3:83246947-83246966 None:intergenic 50.0%
ACGGCTCTTAGGAGAAATCC+GGG + chr6_3:83246947-83246966 Msa0961490:intron 50.0%
CTTAGGAGAAATCCGGGGTT+TGG + chr6_3:83246953-83246972 Msa0961490:intron 50.0%
ATGGATCGCTTAGGAGAACC+CGG - chr6_3:83247030-83247049 None:intergenic 50.0%
CCGATTCTGTCAGAAACACG+TGG + chr6_3:83247253-83247272 Msa0961490:CDS 50.0%
ACAGCGATCTGATGAACCTC+AGG + chr6_3:83247276-83247295 Msa0961490:CDS 50.0%
CTTCGAAAGGTAGAGTCCTG+AGG - chr6_3:83247295-83247314 None:intergenic 50.0%
GGACCACTCATTTGGCTAAC+AGG - chr6_3:83247436-83247455 None:intergenic 50.0%
TCTCTTTATGGCGACGCCAA+AGG + chr6_3:83247995-83248014 Msa0961490:CDS 50.0%
TATGGCGACGCCAAAGGATA+TGG + chr6_3:83248001-83248020 Msa0961490:CDS 50.0%
TGTTATGAACCCTCACGCGA+AGG + chr6_3:83248063-83248082 Msa0961490:CDS 50.0%
GTTGTACAACCTTCGCGTGA+GGG - chr6_3:83248075-83248094 None:intergenic 50.0%
TGTTGTACAACCTTCGCGTG+AGG - chr6_3:83248076-83248095 None:intergenic 50.0%
! CAAGTGTTGTTGCCATTGCG+TGG - chr6_3:83248319-83248338 None:intergenic 50.0%
TCTCCTGAGTCAAGGGTTGT+TGG + chr6_3:83248627-83248646 Msa0961490:CDS 50.0%
! AGTCAAGGGTTGTTGGTGCT+GGG + chr6_3:83248634-83248653 Msa0961490:CDS 50.0%
! AAGGCATCAACACAACACCG+AGG - chr6_3:83248794-83248813 None:intergenic 50.0%
ATGACCCCAAGGAACTTGGT+AGG - chr6_3:83248954-83248973 None:intergenic 50.0%
ATTTGCTCCTGATGACCCCA+AGG - chr6_3:83248965-83248984 None:intergenic 50.0%
GGAGACTGACCAATTAGCAG+AGG - chr6_3:83249054-83249073 None:intergenic 50.0%
ACCAGCATGAACCACCAACA+TGG - chr6_3:83249146-83249165 None:intergenic 50.0%
GGTTCATGCTGGTACCTCTT+TGG + chr6_3:83249153-83249172 Msa0961490:CDS 50.0%
TACTCACCTGTAGGCCAAAG+AGG - chr6_3:83249170-83249189 None:intergenic 50.0%
GATGCATGGATCCAGGATCA+GGG + chr6_3:83249831-83249850 Msa0961490:CDS 50.0%
AATCATTGGAGCCCTGATCC+TGG - chr6_3:83249845-83249864 None:intergenic 50.0%
!! TGCACTCTTTTGGGGATTCC+AGG + chr6_3:83249959-83249978 Msa0961490:CDS 50.0%
CAGCAAATCAGTACTCTGGC+TGG + chr6_3:83250953-83250972 Msa0961490:intron 50.0%
CTACCCTCCTGTAAGTAGGA+TGG - chr6_3:83251321-83251340 None:intergenic 50.0%
GAGGTCGTGATGTTGAGCAA+TGG + chr6_3:83251353-83251372 Msa0961490:CDS 50.0%
GATCTTCTGGTAAGCGACGA+TGG - chr6_3:83251384-83251403 None:intergenic 50.0%
GTCAGGCTGAACGGTATAGT+TGG + chr6_3:83251533-83251552 Msa0961490:CDS 50.0%
GGTATAGTTGGGCTGCAACA+AGG + chr6_3:83251545-83251564 Msa0961490:CDS 50.0%
!! AAGGGGCGTTCCTGAGAAAA+TGG + chr6_3:83251564-83251583 Msa0961490:CDS 50.0%
CAAGTTATAGGCAGACGCGT+AGG - chr6_3:83251774-83251793 None:intergenic 50.0%
AGGTTCATCCTCAGCCATCA+GGG - chr6_3:83251967-83251986 None:intergenic 50.0%
TAGGTTCATCCTCAGCCATC+AGG - chr6_3:83251968-83251987 None:intergenic 50.0%
!! GGGTGGTCTTGTACAGAAGA+TGG + chr6_3:83252055-83252074 Msa0961490:CDS 50.0%
!! AAAATTGGAGAGCGTCGGAG+AGG + chr6_3:83252094-83252113 Msa0961490:CDS 50.0%
TCCGGTTCCGTTATCAGAAG+GGG + chr6_3:83252124-83252143 Msa0961490:CDS 50.0%
!! TCCCCTTCTGATAACGGAAC+CGG - chr6_3:83252128-83252147 None:intergenic 50.0%
CAACAGGGAAATGGGATGGA+TGG - chr6_3:83252484-83252503 None:intergenic 50.0%
!! CCTTATATGACGGCTCTGGA+GGG - chr6_3:83252592-83252611 None:intergenic 50.0%
! ACCTTATATGACGGCTCTGG+AGG - chr6_3:83252593-83252612 None:intergenic 50.0%
GCTGCAAGTGATCTCCAGTA+AGG - chr6_3:83252990-83253009 None:intergenic 50.0%
CGGCTCTTAGGAGAAATCCG+GGG + chr6_3:83246948-83246967 Msa0961490:intron 55.0%
! GGAGAAATCCGGGGTTTGGT+CGG + chr6_3:83246957-83246976 Msa0961490:intron 55.0%
! GAGAAATCCGGGGTTTGGTC+GGG + chr6_3:83246958-83246977 Msa0961490:intron 55.0%
CTTATCTCCCGACCAAACCC+CGG - chr6_3:83246968-83246987 None:intergenic 55.0%
TGGATCGCTTAGGAGAACCC+GGG - chr6_3:83247029-83247048 None:intergenic 55.0%
GCGTGAGGGTTCATAACACC+AGG - chr6_3:83248061-83248080 None:intergenic 55.0%
GCACCAACAACCCTTGACTC+AGG - chr6_3:83248633-83248652 None:intergenic 55.0%
GAGTCAAGGGTTGTTGGTGC+TGG + chr6_3:83248633-83248652 Msa0961490:CDS 55.0%
!! GTCAAGGGTTGTTGGTGCTG+GGG + chr6_3:83248635-83248654 Msa0961490:CDS 55.0%
CCTGATGACCCCAAGGAACT+TGG - chr6_3:83248958-83248977 None:intergenic 55.0%
CCAAGTTCCTTGGGGTCATC+AGG + chr6_3:83248955-83248974 Msa0961490:CDS 55.0%
ATGCTATCCGGCCATGTTGG+TGG + chr6_3:83249132-83249151 Msa0961490:CDS 55.0%
GCATGAACCACCAACATGGC+CGG - chr6_3:83249142-83249161 None:intergenic 55.0%
!! GCCATGTTGGTGGTTCATGC+TGG + chr6_3:83249142-83249161 Msa0961490:CDS 55.0%
CTGGTACCTCTTTGGCCTAC+AGG + chr6_3:83249161-83249180 Msa0961490:CDS 55.0%
CGATGCATGGATCCAGGATC+AGG + chr6_3:83249830-83249849 Msa0961490:CDS 55.0%
TTCTTCAGGCTCTTGGACGG+AGG + chr6_3:83251080-83251099 Msa0961490:CDS 55.0%
! GTCATGCAGGAGAGTACGTC+AGG + chr6_3:83251516-83251535 Msa0961490:intron 55.0%
! GGAGAGTACGTCAGGCTGAA+CGG + chr6_3:83251524-83251543 Msa0961490:intron 55.0%
GATGGCGCCTTATGTCTGTC+TGG - chr6_3:83251615-83251634 None:intergenic 55.0%
! CGCGTCTGCCTATAACTTGC+TGG + chr6_3:83251775-83251794 Msa0961490:intron 55.0%
! CGCGGAAAATTGGAGAGCGT+CGG + chr6_3:83252089-83252108 Msa0961490:CDS 55.0%
CGTCGGAGAGGATGGAATTC+CGG + chr6_3:83252106-83252125 Msa0961490:CDS 55.0%
CCCTCCAGAGCCGTCATATA+AGG + chr6_3:83252589-83252608 Msa0961490:intron 55.0%
CTGGTCCGCTTCGTACCACA+AGG + chr6_3:83247404-83247423 Msa0961490:CDS 60.0%
GGCAGGCATCCCGCAAACAT+TGG - chr6_3:83249761-83249780 None:intergenic 60.0%
TCTTGGACGGAGGTAGAGCG+TGG + chr6_3:83251090-83251109 Msa0961490:intron 60.0%
!! TTGGAGAGCGTCGGAGAGGA+TGG + chr6_3:83252098-83252117 Msa0961490:CDS 60.0%
TTGCGGAGCCCTCGTGTTCA+AGG + chr6_3:83252436-83252455 Msa0961490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 83246662 83253314 83246662 ID=Msa0961490;Name=Msa0961490
chr6_3 mRNA 83246662 83253314 83246662 ID=Msa0961490-mRNA-1;Parent=Msa0961490;Name=Msa0961490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.91|0.92|0.92|1|1|13|214|763
chr6_3 exon 83246662 83246664 83246662 ID=Msa0961490-mRNA-1:exon:14904;Parent=Msa0961490-mRNA-1
chr6_3 exon 83247211 83247696 83247211 ID=Msa0961490-mRNA-1:exon:14905;Parent=Msa0961490-mRNA-1
chr6_3 exon 83247986 83248177 83247986 ID=Msa0961490-mRNA-1:exon:14906;Parent=Msa0961490-mRNA-1
chr6_3 exon 83248293 83248391 83248293 ID=Msa0961490-mRNA-1:exon:14907;Parent=Msa0961490-mRNA-1
chr6_3 exon 83248609 83248746 83248609 ID=Msa0961490-mRNA-1:exon:14908;Parent=Msa0961490-mRNA-1
chr6_3 exon 83248934 83249182 83248934 ID=Msa0961490-mRNA-1:exon:14909;Parent=Msa0961490-mRNA-1
chr6_3 exon 83249750 83249980 83249750 ID=Msa0961490-mRNA-1:exon:14910;Parent=Msa0961490-mRNA-1
chr6_3 exon 83250956 83251101 83250956 ID=Msa0961490-mRNA-1:exon:14911;Parent=Msa0961490-mRNA-1
chr6_3 exon 83251333 83251410 83251333 ID=Msa0961490-mRNA-1:exon:14912;Parent=Msa0961490-mRNA-1
chr6_3 exon 83251525 83251654 83251525 ID=Msa0961490-mRNA-1:exon:14913;Parent=Msa0961490-mRNA-1
chr6_3 exon 83251951 83252203 83251951 ID=Msa0961490-mRNA-1:exon:14914;Parent=Msa0961490-mRNA-1
chr6_3 exon 83252305 83252467 83252305 ID=Msa0961490-mRNA-1:exon:14915;Parent=Msa0961490-mRNA-1
chr6_3 exon 83252977 83253314 83252977 ID=Msa0961490-mRNA-1:exon:14916;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83246662 83246664 83246662 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83247211 83247696 83247211 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83247986 83248177 83247986 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83248293 83248391 83248293 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83248609 83248746 83248609 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83248934 83249182 83248934 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83249750 83249980 83249750 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83250956 83251101 83250956 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83251333 83251410 83251333 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83251525 83251654 83251525 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83251951 83252203 83251951 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83252305 83252467 83252305 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 CDS 83252977 83253100 83252977 ID=Msa0961490-mRNA-1:cds;Parent=Msa0961490-mRNA-1
chr6_3 three_prime_UTR 83253101 83253314 83253101 ID=Msa0961490-mRNA-1:three_prime_utr;Parent=Msa0961490-mRNA-1
Gene Sequence

>Msa0961490

ATGAATCTTGAAGAAAACATGAATCATTTTGATAAAGATGAAATTCCGATTCTGTCAGAAACACGTGGACAGCGATCTGATGAACCTCAGGACTCTACCTTTCGAAGAAACATATCGAGGACACGGAGTGCTTCAATTTCTATTCCTATGGCTTCTCTGGATCCATATGAGAGACAACCAAATCTTGTCGGACATACTGGTCCGCTTCGTACCACAAGGAAAACTCCTGTTAGCCAAATGAGTGGTCCATTATATGCTACTCCTGCAACTGGAAATCCTTTTCAGAATAATATAATAGTGGCAGGAAACAAAGTAAGGGAGAACAAGACAGAGAAGTTTTCTACATTTGATGGCACGGATAAAAATGAACACTTGTTAAGGTCTGGACAACTAGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAAAGTTGCTCAGCAAAGAAAACCAAGAGCTCCCACTATATTTGATCCTAAGTTCCACAATTCTCTTTATGGCGACGCCAAAGGATATGGAAGAAAACTTTTTTCTTTCTGCTCTTCATGTATTCCTGGTGTTATGAACCCTCACGCGAAGGTTGTACAACAATGGAACAAGGTTTTGGCCATATTTTGCTTGGTCGCAATTTTTGTTGATCCGCTATTTTTCTTCTTACTCTATGTGGAGAAGAAAAATAAATGTATTCGAATCAACCACGCAATGGCAACAACACTTGTTGTACTTAGAAGCATAACTGATGTTGTGTATCTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCAAGGGTTGTTGGTGCTGGGGATTTAGTTGACCATCCCAAGAAAATAGCTGTTAATTACTTTAAGAGCTACTTTCTCTTCGACTTATTTGTTGTATCACCTCTTCCTCAGATAATGATAATATTTATCCTACCAAGTTCCTTGGGGTCATCAGGAGCAAATTATGTCAAGAATCTTCTACGTCTAGGAATCCTTATCCAATATATTCCCAGATTGTTCAGATTTTTGCCTCTGCTAATTGGTCAGTCTCCAACCGGATTCATATTCGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTGATTTTTATGCTATCCGGCCATGTTGGTGGTTCATGCTGGTACCTCTTTGGCCTACAGAGGGTTAACCAATGTTTGCGGGATGCCTGCCATCGTACTAATCTAACTGCATGCATGAAATTGATTGATTGTCATTATAACGATGCATGGATCCAGGATCAGGGCTCCAATGATTGTTTGAATTCTTCATCTGGTGCTTTTCCTTATGGAATTTATAACGCTGCTGTACCACTTACGATAGAAACTAGGGTGGTCAACAAATATGTGTATGCACTCTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAACAACCAAGCTATTTTGTGTGGGAAGTTCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGGACGGAGGAGGGTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAACCATCGTCGCTTACCAGAAGATCTTAAAAGGAGAGTACGTCAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGCGTTCCTGAGAAAATGGTTCTGGAAAATTTGCCAGAAGATCTCCAGACAGACATAAGGCGCCATCTCTTCAAATTTGTTAATAAAGTTCGAATTTTTTCCCTGATGGCTGAGGATGAACCTATCTTAGACGCCATTCGTGAGAGACTAATACAGACGACATACATTAAAGGAAGTAAAATTCTCAGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTATTGTGCGCGGAAAATTGGAGAGCGTCGGAGAGGATGGAATTCCGGTTCCGTTATCAGAAGGGGATGCTTGTGGTGAAGAACTTCTAAGATGGTATCTTGAACAGTCTTCTGAAAGCAAAGAAGGTAAAAAAATAAAGCTTCATGGACAGGGTTTGACTAGCGACAGAACAGTAAGATGCTTAACCAATGTGGAGGCATTTTCACTCCGTGCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGATTTTTGCGGAGCCCTCGTGTTCAAGGAGTTATAAGGTATGAATCACCTTACTGGAGATCACTTGCAGCAAACAGAATTCGGGTTGCATGGAGATATAGGAAGAAACGTATAAGTCGAGCTAATACCACTCAAAATGATTATCAAACATTGATGCCATAG
Protein sequence

>Msa0961490

MNLEENMNHFDKDEIPILSETRGQRSDEPQDSTFRRNISRTRSASISIPMASLDPYERQPNLVGHTGPLRTTRKTPVSQMSGPLYATPATGNPFQNNIIVAGNKVRENKTEKFSTFDGTDKNEHLLRSGQLGMCNDPYCTTCPTYFKVAQQRKPRAPTIFDPKFHNSLYGDAKGYGRKLFSFCSSCIPGVMNPHAKVVQQWNKVLAIFCLVAIFVDPLFFFLLYVEKKNKCIRINHAMATTLVVLRSITDVVYLLNILLQFRLAYVSPESRVVGAGDLVDHPKKIAVNYFKSYFLFDLFVVSPLPQIMIIFILPSSLGSSGANYVKNLLRLGILIQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVGGSCWYLFGLQRVNQCLRDACHRTNLTACMKLIDCHYNDAWIQDQGSNDCLNSSSGAFPYGIYNAAVPLTIETRVVNKYVYALFWGFQQISTLAGNQQPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRVEMQLRGRDVEQWMNHRRLPEDLKRRVRQAERYSWAATRGVPEKMVLENLPEDLQTDIRRHLFKFVNKVRIFSLMAEDEPILDAIRERLIQTTYIKGSKILSQGGLVQKMVFIVRGKLESVGEDGIPVPLSEGDACGEELLRWYLEQSSESKEGKKIKLHGQGLTSDRTVRCLTNVEAFSLRAKDIEEVTTLFARFLRSPRVQGVIRYESPYWRSLAANRIRVAWRYRKKRISRANTTQNDYQTLMP*