Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898510 | KEH26574.1 | 74.757 | 103 | 24 | 1 | 2 | 104 | 45 | 145 | 6.60e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898510 | sp|Q9FJ95|DHSO_ARATH | 66.990 | 103 | 32 | 1 | 2 | 104 | 63 | 163 | 1.42e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898510 | A0A072U9U2 | 74.757 | 103 | 24 | 1 | 2 | 104 | 45 | 145 | 3.15e-46 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0633060 | Msa0898510 | 0.813135 | 2.982943e-51 | -8.615850e-47 |
| Msa0898500 | Msa0898510 | 0.852107 | 5.734013e-61 | -8.615850e-47 |
| Msa0898510 | Msa1044420 | 0.816947 | 4.252604e-52 | -8.615850e-47 |
| Msa0898510 | Msa1186060 | 0.824797 | 6.644083e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898510 | MtrunA17_Chr6g0474141 | 74.757 | 103 | 24 | 1 | 2 | 104 | 61 | 161 | 6.52e-50 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898510 | AT5G51970.1 | 66.990 | 103 | 32 | 1 | 2 | 104 | 63 | 163 | 1.44e-44 | 148 |
| Msa0898510 | AT5G51970.2 | 66.990 | 103 | 32 | 1 | 2 | 104 | 63 | 163 | 1.44e-44 | 148 |
Find 85 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAGAAATTTGCAGAAAA+AGG | 0.178905 | 6_1:-92632582 | Msa0898510:five_prime_UTR |
| TGTTGATTTCCATTAAAATT+TGG | 0.183698 | 6_1:+92632902 | None:intergenic |
| CCATGAATGCAGTTATAAAA+TGG | 0.219954 | 6_1:-92629754 | Msa0898510:three_prime_UTR |
| TTTGGGTCAATGCTGGATTT+TGG | 0.222386 | 6_1:-92632548 | Msa0898510:five_prime_UTR |
| TTTGCTACTCCACCAGTTCA+TGG | 0.280224 | 6_1:-92631317 | Msa0898510:CDS |
| TAAAATTTGGCTAAGTTTGA+TGG | 0.282820 | 6_1:+92632915 | None:intergenic |
| TTTGTAAAATTGACTAAAAT+TGG | 0.298067 | 6_1:-92629553 | Msa0898510:three_prime_UTR |
| ACACTAAGTTACAGTATAAT+TGG | 0.300206 | 6_1:-92629798 | Msa0898510:three_prime_UTR |
| GTTAAGGAACCAATGGTTAT+TGG | 0.303921 | 6_1:-92631491 | Msa0898510:CDS |
| ACTGGTGTGCACATCTTCTT+TGG | 0.327169 | 6_1:-92629438 | None:intergenic |
| GACTTCATGACCAGGGTTCT+TGG | 0.334135 | 6_1:+92629512 | None:intergenic |
| CGTTGTCATAATTGCAAACT+TGG | 0.336114 | 6_1:-92631371 | Msa0898510:CDS |
| CTTTCAGAAAGCTTCTACTA+AGG | 0.340021 | 6_1:-92629719 | Msa0898510:three_prime_UTR |
| TCATGGCTCACTCGCTAATC+AGG | 0.358134 | 6_1:-92631300 | Msa0898510:intron |
| TTTGGCTAAGTTTGATGGAT+TGG | 0.358397 | 6_1:+92632920 | None:intergenic |
| TCCTCATGTGCCTTTATACT+TGG | 0.363873 | 6_1:-92629674 | Msa0898510:three_prime_UTR |
| GTAACTTAGTGTGCACCAAC+TGG | 0.390762 | 6_1:+92629809 | None:intergenic |
| TTATCCATTGTGGTTTGGTT+TGG | 0.393496 | 6_1:-92632612 | Msa0898510:five_prime_UTR |
| TTGGCTAAGTTTGATGGATT+GGG | 0.393848 | 6_1:+92632921 | None:intergenic |
| AAAAGGATTACTGAAAGTTT+GGG | 0.396958 | 6_1:-92632565 | Msa0898510:five_prime_UTR |
| TAATCTGATTCAGAAGGTTA+TGG | 0.405157 | 6_1:-92632464 | Msa0898510:intron |
| GGGTTTGGTTGTTCTGCTGC+TGG | 0.408072 | 6_1:-92632661 | Msa0898510:five_prime_UTR |
| AATATTTATCCATTGTGGTT+TGG | 0.410975 | 6_1:-92632617 | Msa0898510:five_prime_UTR |
| TGATGGATTGGGGTGGAAGA+AGG | 0.416849 | 6_1:+92632932 | None:intergenic |
| TGCACACATTCCAAGTATAA+AGG | 0.423609 | 6_1:+92629664 | None:intergenic |
| CTGAAAGTTTGGGTCAATGC+TGG | 0.428752 | 6_1:-92632555 | Msa0898510:five_prime_UTR |
| GACCGTGTGACAATCGAGCC+TGG | 0.434046 | 6_1:-92631407 | Msa0898510:CDS |
| AGAGGCTCACACATGACATT+TGG | 0.438472 | 6_1:+92629876 | None:intergenic |
| GAACAATTTAATCCTTATGC+AGG | 0.443965 | 6_1:-92632854 | Msa0898510:five_prime_UTR |
| AAGCTTCAAATCTTGATCCT+TGG | 0.470419 | 6_1:-92632876 | Msa0898510:five_prime_UTR |
| GGAAGAATGAGGCTAGGGTT+TGG | 0.476338 | 6_1:-92632676 | Msa0898510:five_prime_UTR |
| TGGCTAAGTTTGATGGATTG+GGG | 0.493585 | 6_1:+92632922 | None:intergenic |
| TCGAGCCTGGGATTAGTTGT+TGG | 0.495453 | 6_1:-92631394 | Msa0898510:CDS |
| TGGATTGGGGTGGAAGAAGG+AGG | 0.497791 | 6_1:+92632935 | None:intergenic |
| GAGGCGATTGTAATTGCTAC+TGG | 0.499071 | 6_1:-92629456 | Msa0898510:three_prime_UTR |
| GCGTGAGATGTTTAGAGAGA+AGG | 0.500013 | 6_1:+92632962 | None:intergenic |
| AATGTTAATTTCTTGTCAAG+AGG | 0.507060 | 6_1:+92629858 | None:intergenic |
| ACCGTGTGACAATCGAGCCT+GGG | 0.525638 | 6_1:-92631406 | Msa0898510:CDS |
| GGATTGGGGTGGAAGAAGGA+GGG | 0.526107 | 6_1:+92632936 | None:intergenic |
| TGTTCTGCTGCTGGAAGAGT+GGG | 0.528102 | 6_1:-92632652 | Msa0898510:five_prime_UTR |
| TTGTTCTGCTGCTGGAAGAG+TGG | 0.538246 | 6_1:-92632653 | Msa0898510:five_prime_UTR |
| GTTATTGGTCATGAGTGTGC+TGG | 0.542398 | 6_1:-92631476 | Msa0898510:CDS |
| TGGTGGTCAGATAAAGACTT+TGG | 0.543771 | 6_1:-92631438 | Msa0898510:CDS |
| AACAAGGAAGAATGAGGCTA+GGG | 0.544925 | 6_1:-92632681 | Msa0898510:five_prime_UTR |
| GTGGTTGAGTTCAGCTAGGA+GGG | 0.546134 | 6_1:+92632802 | None:intergenic |
| AAACAAGGAAGAATGAGGCT+AGG | 0.555234 | 6_1:-92632682 | Msa0898510:five_prime_UTR |
| CAGATAAAGACTTTGGTGAC+GGG | 0.555447 | 6_1:-92631431 | Msa0898510:CDS |
| CCGAAGTAGACTTCATGACC+AGG | 0.557538 | 6_1:+92629504 | None:intergenic |
| GTGTGAATATTTATCCATTG+TGG | 0.564698 | 6_1:-92632622 | Msa0898510:five_prime_UTR |
| GTAAGAAACAAGGAAGAATG+AGG | 0.565874 | 6_1:-92632687 | Msa0898510:five_prime_UTR |
| ATTCAAAACTTGTGAGCTTG+TGG | 0.566883 | 6_1:+92632783 | None:intergenic |
| GCTTGTGGTTGAGTTCAGCT+AGG | 0.568220 | 6_1:+92632798 | None:intergenic |
| CACTCATGACCAATAACCAT+TGG | 0.574816 | 6_1:+92631482 | None:intergenic |
| CGAACATGATGAGAATCGCC+AGG | 0.577528 | 6_1:-92629589 | Msa0898510:three_prime_UTR |
| TAAGCTTAATCTGATTCAGA+AGG | 0.578193 | 6_1:-92632470 | Msa0898510:five_prime_UTR |
| TTAGCGAGTGAGCCATGAAC+TGG | 0.580769 | 6_1:+92631305 | None:intergenic |
| CTACTCTATAAACAATCTGA+TGG | 0.585680 | 6_1:+92632755 | None:intergenic |
| GCTGGGATCATTGAAGAAGT+TGG | 0.586508 | 6_1:-92631458 | Msa0898510:CDS |
| ATAAGGATTAAATTGTTCCA+AGG | 0.587103 | 6_1:+92632859 | None:intergenic |
| GGAATGTGTGCACAATCACT+AGG | 0.589579 | 6_1:-92629653 | Msa0898510:three_prime_UTR |
| AGAGTCTGATTTCTAGAGAG+AGG | 0.590019 | 6_1:+92632988 | None:intergenic |
| TTATTGGTCATGAGTGTGCT+GGG | 0.592332 | 6_1:-92631475 | Msa0898510:CDS |
| CCTGGTCATGAAGTCTACTT+CGG | 0.592347 | 6_1:-92629504 | Msa0898510:three_prime_UTR |
| GTTCAGCTAGGAGGGAAAAG+AGG | 0.597652 | 6_1:+92632810 | None:intergenic |
| CTTAGTAGAAGCTTTCTGAA+AGG | 0.604330 | 6_1:+92629720 | None:intergenic |
| TCCAAGTATAAAGGCACATG+AGG | 0.604359 | 6_1:+92629673 | None:intergenic |
| TGTGGTTGAGTTCAGCTAGG+AGG | 0.605438 | 6_1:+92632801 | None:intergenic |
| TGGGGTGGAAGAAGGAGGGA+AGG | 0.605825 | 6_1:+92632940 | None:intergenic |
| GCGAGTGAGCCATGAACTGG+TGG | 0.607485 | 6_1:+92631308 | None:intergenic |
| ATGATTAGAAGTAAGAAACA+AGG | 0.611284 | 6_1:-92632697 | Msa0898510:five_prime_UTR |
| CTAAGTTTGATGGATTGGGG+TGG | 0.613755 | 6_1:+92632925 | None:intergenic |
| AGATTTAGTACATACCCAGT+TGG | 0.617864 | 6_1:-92629824 | Msa0898510:exon |
| TCAGATAAAGACTTTGGTGA+CGG | 0.618240 | 6_1:-92631432 | Msa0898510:CDS |
| TAACTTAGTGTGCACCAACT+GGG | 0.618614 | 6_1:+92629810 | None:intergenic |
| AGAAGGCAGGAACTATGAGC+TGG | 0.620212 | 6_1:-92632496 | Msa0898510:five_prime_UTR |
| CTGCTGCTGGAAGAGTGGGT+AGG | 0.622639 | 6_1:-92632648 | Msa0898510:five_prime_UTR |
| CAACGCCAACAACTAATCCC+AGG | 0.623296 | 6_1:+92631389 | None:intergenic |
| GAATTGTTTACCAAGAACCC+TGG | 0.635568 | 6_1:-92629522 | Msa0898510:three_prime_UTR |
| ATTGCCAAACCAAACCACAA+TGG | 0.637923 | 6_1:+92632608 | None:intergenic |
| TTCGGCTCTACTGTAAAGCA+AGG | 0.649355 | 6_1:-92629486 | Msa0898510:three_prime_UTR |
| TCCCAGGCTCGATTGTCACA+CGG | 0.651363 | 6_1:+92631405 | None:intergenic |
| GCTAGGAGGGAAAAGAGGAA+AGG | 0.662694 | 6_1:+92632815 | None:intergenic |
| TGTAAAGCAAGGAGAACTCG+AGG | 0.676421 | 6_1:-92629475 | Msa0898510:three_prime_UTR |
| GGGATCATTGAAGAAGTTGG+TGG | 0.686510 | 6_1:-92631455 | Msa0898510:CDS |
| CGAAGTAGACTTCATGACCA+GGG | 0.696865 | 6_1:+92629505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTATGTTATGA+TGG | - | chr6_1:92630388-92630407 | Msa0898510:intron | 15.0% |
| !! | AATGTTCATGTTAAAATATT+CGG | - | chr6_1:92630469-92630488 | Msa0898510:intron | 15.0% |
| !!! | TATTTTGTTTTCATGATTTT+AGG | - | chr6_1:92630690-92630709 | Msa0898510:intron | 15.0% |
| !!! | ATTTTGTTTTCATGATTTTA+GGG | - | chr6_1:92630691-92630710 | Msa0898510:intron | 15.0% |
| !!! | TCTTTTTGATGTTTAATTAA+AGG | - | chr6_1:92632816-92632835 | Msa0898510:five_prime_UTR | 15.0% |
| !! | TTTGTAAAATTGACTAAAAT+TGG | - | chr6_1:92632888-92632907 | Msa0898510:five_prime_UTR | 15.0% |
| !!! | TGTTGATTTCCATTAAAATT+TGG | + | chr6_1:92629542-92629561 | None:intergenic | 20.0% |
| !!! | GGTATAATTTTAAGAAATGT+TGG | - | chr6_1:92630058-92630077 | Msa0898510:intron | 20.0% |
| !!! | AAATTTTGTCTATTTTCCAA+TGG | + | chr6_1:92630162-92630181 | None:intergenic | 20.0% |
| !! | AATTTATGTCTTCTTTCTAA+TGG | + | chr6_1:92630343-92630362 | None:intergenic | 20.0% |
| !!! | GACATAAATTAACTTGAAAT+AGG | - | chr6_1:92630353-92630372 | Msa0898510:intron | 20.0% |
| !!! | TAATGATTTTTTTCTCCAAA+TGG | - | chr6_1:92630790-92630809 | Msa0898510:intron | 20.0% |
| !!! | AACTATACTTTGAGAATTTA+TGG | + | chr6_1:92631181-92631200 | None:intergenic | 20.0% |
| !! | AAAAATCAATGCATTCATTT+CGG | + | chr6_1:92631470-92631489 | None:intergenic | 20.0% |
| !!! | TGTTTCTATATGTTTTTTGT+TGG | - | chr6_1:92631513-92631532 | Msa0898510:CDS | 20.0% |
| !! | ACATTATTACTATGATACAA+TGG | + | chr6_1:92631666-92631685 | None:intergenic | 20.0% |
| !!! | TATTTTTGTCTACTTTACAA+AGG | + | chr6_1:92631834-92631853 | None:intergenic | 20.0% |
| !!! | TACTAACAAAACTGAATTTT+TGG | - | chr6_1:92632113-92632132 | Msa0898510:intron | 20.0% |
| !! | TACAAATGATATAACTAAAC+AGG | + | chr6_1:92632241-92632260 | None:intergenic | 20.0% |
| ! | TAAAATTTGGCTAAGTTTGA+TGG | + | chr6_1:92629529-92629548 | None:intergenic | 25.0% |
| !! | CAAACTTAGCCAAATTTTAA+TGG | - | chr6_1:92629530-92629549 | Msa0898510:three_prime_UTR | 25.0% |
| ! | ATAAGGATTAAATTGTTCCA+AGG | + | chr6_1:92629585-92629604 | None:intergenic | 25.0% |
| !!! | AAGAATTTTAATCCTGCATA+AGG | + | chr6_1:92629602-92629621 | None:intergenic | 25.0% |
| ! | ATGATTAGAAGTAAGAAACA+AGG | - | chr6_1:92629744-92629763 | Msa0898510:three_prime_UTR | 25.0% |
| ! | AATATTTATCCATTGTGGTT+TGG | - | chr6_1:92629824-92629843 | Msa0898510:exon | 25.0% |
| ! | AACAAGAAATTTGCAGAAAA+AGG | - | chr6_1:92629859-92629878 | Msa0898510:CDS | 25.0% |
| ! | AAAAAGGATTACTGAAAGTT+TGG | - | chr6_1:92629875-92629894 | Msa0898510:CDS | 25.0% |
| ! | AAAAGGATTACTGAAAGTTT+GGG | - | chr6_1:92629876-92629895 | Msa0898510:CDS | 25.0% |
| ! | TGAATTTGATTAGATAGAGA+AGG | - | chr6_1:92630018-92630037 | Msa0898510:intron | 25.0% |
| ! | GACAAAATTTAACACGAAAT+AGG | - | chr6_1:92630172-92630191 | Msa0898510:intron | 25.0% |
| !! | AATTAACTTGAAATAGGCTT+TGG | - | chr6_1:92630359-92630378 | Msa0898510:intron | 25.0% |
| ! | ATAAAAAATCTGCTCTATTG+TGG | - | chr6_1:92630442-92630461 | Msa0898510:intron | 25.0% |
| ! | ATCAAAATTGCAGATTATGT+AGG | + | chr6_1:92630819-92630838 | None:intergenic | 25.0% |
| !!! | TAATCTGCAATTTTGATTCA+AGG | - | chr6_1:92630822-92630841 | Msa0898510:intron | 25.0% |
| !!! | AATCTGCAATTTTGATTCAA+GGG | - | chr6_1:92630823-92630842 | Msa0898510:intron | 25.0% |
| ! | TATAGAACAAAGATAAATGC+AGG | + | chr6_1:92630855-92630874 | None:intergenic | 25.0% |
| !! | ATGTGCAGATTTTATAGTTA+AGG | - | chr6_1:92630934-92630953 | Msa0898510:intron | 25.0% |
| !! | TTTTATAGTTAAGGAACCAA+TGG | - | chr6_1:92630943-92630962 | Msa0898510:intron | 25.0% |
| ! | TAGCAAAAAACTTCATATCA+AGG | + | chr6_1:92631111-92631130 | None:intergenic | 25.0% |
| !! | TAGATTTTTGTACTTCGAAT+TGG | + | chr6_1:92631215-92631234 | None:intergenic | 25.0% |
| ! | CGGTAGAACATAAAAAAATT+AGG | - | chr6_1:92631420-92631439 | Msa0898510:CDS | 25.0% |
| ! | AAAATCAATGCATTCATTTC+GGG | + | chr6_1:92631469-92631488 | None:intergenic | 25.0% |
| ! | ATTGCTCAAAGTATAATATG+TGG | - | chr6_1:92631551-92631570 | Msa0898510:intron | 25.0% |
| ! | TTGCTCAAAGTATAATATGT+GGG | - | chr6_1:92631552-92631571 | Msa0898510:intron | 25.0% |
| ! | GAAATGCATTTGATTGAATT+TGG | - | chr6_1:92631596-92631615 | Msa0898510:intron | 25.0% |
| ! | GTATGATCAATTTACTAACA+GGG | + | chr6_1:92631774-92631793 | None:intergenic | 25.0% |
| ! | TGTATGATCAATTTACTAAC+AGG | + | chr6_1:92631775-92631794 | None:intergenic | 25.0% |
| ! | TTTAGGAAAACTGTACAAAT+TGG | - | chr6_1:92631963-92631982 | Msa0898510:intron | 25.0% |
| !!! | ACAAAACTGAATTTTTGGAT+TGG | - | chr6_1:92632118-92632137 | Msa0898510:intron | 25.0% |
| ! | GCTTAGTTACTAAACATAAA+AGG | + | chr6_1:92632352-92632371 | None:intergenic | 25.0% |
| ! | AACAATATGCATAATGAATC+TGG | + | chr6_1:92632524-92632543 | None:intergenic | 25.0% |
| ! | AATGTTAATTTCTTGTCAAG+AGG | + | chr6_1:92632586-92632605 | None:intergenic | 25.0% |
| ! | ACACTAAGTTACAGTATAAT+TGG | - | chr6_1:92632643-92632662 | Msa0898510:five_prime_UTR | 25.0% |
| ! | ACAAACACAAAAATAATACC+TGG | + | chr6_1:92632873-92632892 | None:intergenic | 25.0% |
| GAACAATTTAATCCTTATGC+AGG | - | chr6_1:92629587-92629606 | Msa0898510:three_prime_UTR | 30.0% | |
| CTACTCTATAAACAATCTGA+TGG | + | chr6_1:92629689-92629708 | None:intergenic | 30.0% | |
| GTGTGAATATTTATCCATTG+TGG | - | chr6_1:92629819-92629838 | Msa0898510:three_prime_UTR | 30.0% | |
| ! | AGAAATTGAAGTTTTGCAGA+AGG | - | chr6_1:92629928-92629947 | Msa0898510:intron | 30.0% |
| TAAGCTTAATCTGATTCAGA+AGG | - | chr6_1:92629971-92629990 | Msa0898510:intron | 30.0% | |
| TAATCTGATTCAGAAGGTTA+TGG | - | chr6_1:92629977-92629996 | Msa0898510:intron | 30.0% | |
| !! | ATAGAGAAGGATTTGTTAGT+TGG | - | chr6_1:92630031-92630050 | Msa0898510:intron | 30.0% |
| !! | AAGGATTTGTTAGTTGGTTA+TGG | - | chr6_1:92630037-92630056 | Msa0898510:intron | 30.0% |
| TTGAGTGAAAATTGAACCAT+TGG | - | chr6_1:92630143-92630162 | Msa0898510:intron | 30.0% | |
| !! | AAAATCTGAAGTGTTGTTGT+TGG | - | chr6_1:92630265-92630284 | Msa0898510:intron | 30.0% |
| GTATAAGTCACATTTCAAAC+TGG | + | chr6_1:92630321-92630340 | None:intergenic | 30.0% | |
| ! | AGAGTGTTTAGAATAAGTCA+TGG | - | chr6_1:92630621-92630640 | Msa0898510:intron | 30.0% |
| !!! | TTTCGTTTTTTGTTGTTGGT+TGG | - | chr6_1:92630658-92630677 | Msa0898510:intron | 30.0% |
| AGATTATGTAGGAAACCATT+TGG | + | chr6_1:92630808-92630827 | None:intergenic | 30.0% | |
| AATTTCAATGTTGCAAGTAG+TGG | - | chr6_1:92631243-92631262 | Msa0898510:intron | 30.0% | |
| !!! | ATTTTTTTATGTTCTACCGC+AGG | + | chr6_1:92631419-92631438 | None:intergenic | 30.0% |
| AAATCAATGCATTCATTTCG+GGG | + | chr6_1:92631468-92631487 | None:intergenic | 30.0% | |
| GACAAAAATACCTACAGAAT+AGG | - | chr6_1:92631844-92631863 | Msa0898510:intron | 30.0% | |
| ! | TTTTCCTAAAGAACATGTAC+AGG | + | chr6_1:92631953-92631972 | None:intergenic | 30.0% |
| GAATGTTCGTTTAGTCAATT+CGG | - | chr6_1:92632045-92632064 | Msa0898510:intron | 30.0% | |
| ATTGCACATTACTTACCATA+AGG | - | chr6_1:92632422-92632441 | Msa0898510:intron | 30.0% | |
| TTGCACATTACTTACCATAA+GGG | - | chr6_1:92632423-92632442 | Msa0898510:intron | 30.0% | |
| ! | CCATTTTATAACTGCATTCA+TGG | + | chr6_1:92632690-92632709 | None:intergenic | 30.0% |
| CCATGAATGCAGTTATAAAA+TGG | - | chr6_1:92632687-92632706 | Msa0898510:five_prime_UTR | 30.0% | |
| !! | TTGGCTAAGTTTGATGGATT+GGG | + | chr6_1:92629523-92629542 | None:intergenic | 35.0% |
| ! | TTTGGCTAAGTTTGATGGAT+TGG | + | chr6_1:92629524-92629543 | None:intergenic | 35.0% |
| AAGCTTCAAATCTTGATCCT+TGG | - | chr6_1:92629565-92629584 | Msa0898510:three_prime_UTR | 35.0% | |
| ATTCAAAACTTGTGAGCTTG+TGG | + | chr6_1:92629661-92629680 | None:intergenic | 35.0% | |
| GTAAGAAACAAGGAAGAATG+AGG | - | chr6_1:92629754-92629773 | Msa0898510:three_prime_UTR | 35.0% | |
| !! | TTATCCATTGTGGTTTGGTT+TGG | - | chr6_1:92629829-92629848 | Msa0898510:exon | 35.0% |
| TAGACCTACTGTCAGAAAAA+CGG | - | chr6_1:92630093-92630112 | Msa0898510:intron | 35.0% | |
| ACGGTCATAAATACTTAAGC+TGG | - | chr6_1:92630112-92630131 | Msa0898510:intron | 35.0% | |
| ATTTAACACGAAATAGGCTC+TGG | - | chr6_1:92630178-92630197 | Msa0898510:intron | 35.0% | |
| AAAATCTGCTCTATTGTGGT+TGG | - | chr6_1:92630446-92630465 | Msa0898510:intron | 35.0% | |
| AGTCCTTGTAATTTCAATCC+AGG | + | chr6_1:92630502-92630521 | None:intergenic | 35.0% | |
| !!! | GCTCTTTCGTTTTTTGTTGT+TGG | - | chr6_1:92630654-92630673 | Msa0898510:intron | 35.0% |
| GTTAAGGAACCAATGGTTAT+TGG | - | chr6_1:92630950-92630969 | Msa0898510:intron | 35.0% | |
| TCAGATAAAGACTTTGGTGA+CGG | - | chr6_1:92631009-92631028 | Msa0898510:intron | 35.0% | |
| CGTTGTCATAATTGCAAACT+TGG | - | chr6_1:92631070-92631089 | Msa0898510:intron | 35.0% | |
| ! | AAAGCGCTATAACACAACTA+CGG | + | chr6_1:92631306-92631325 | None:intergenic | 35.0% |
| GCATTTGATTGAATTTGGCA+AGG | - | chr6_1:92631601-92631620 | Msa0898510:intron | 35.0% | |
| AAATTCTGCAATTTGCAGCT+TGG | - | chr6_1:92631745-92631764 | Msa0898510:intron | 35.0% | |
| TGTACCTGTACATGTTCTTT+AGG | - | chr6_1:92631946-92631965 | Msa0898510:intron | 35.0% | |
| TTGACTAAACGAACATTCCT+TGG | + | chr6_1:92632043-92632062 | None:intergenic | 35.0% | |
| TGCTAATACTCTAACACAGA+TGG | - | chr6_1:92632179-92632198 | Msa0898510:intron | 35.0% | |
| !!! | CTCTAACACAGATGGTTTTT+TGG | - | chr6_1:92632187-92632206 | Msa0898510:intron | 35.0% |
| TGTTTAGTAACTAAGCTAGC+TGG | - | chr6_1:92632356-92632375 | Msa0898510:intron | 35.0% | |
| CTAAGCTAGCTGGTAATTAA+TGG | - | chr6_1:92632277-92632296 | Msa0898510:intron | 35.0% | |
| ! | ACTTTTCTAATGGCATCTTC+AGG | - | chr6_1:92632452-92632471 | Msa0898510:intron | 35.0% |
| AGATTTAGTACATACCCAGT+TGG | - | chr6_1:92632617-92632636 | Msa0898510:five_prime_UTR | 35.0% | |
| CTTAGTAGAAGCTTTCTGAA+AGG | + | chr6_1:92632724-92632743 | None:intergenic | 35.0% | |
| CTTTCAGAAAGCTTCTACTA+AGG | - | chr6_1:92632722-92632741 | Msa0898510:five_prime_UTR | 35.0% | |
| TGCACACATTCCAAGTATAA+AGG | + | chr6_1:92632780-92632799 | None:intergenic | 35.0% | |
| ! | AGAGTCTGATTTCTAGAGAG+AGG | + | chr6_1:92629456-92629475 | None:intergenic | 40.0% |
| !! | TGGCTAAGTTTGATGGATTG+GGG | + | chr6_1:92629522-92629541 | None:intergenic | 40.0% |
| AAACAAGGAAGAATGAGGCT+AGG | - | chr6_1:92629759-92629778 | Msa0898510:three_prime_UTR | 40.0% | |
| AACAAGGAAGAATGAGGCTA+GGG | - | chr6_1:92629760-92629779 | Msa0898510:three_prime_UTR | 40.0% | |
| ATTGCCAAACCAAACCACAA+TGG | + | chr6_1:92629836-92629855 | None:intergenic | 40.0% | |
| ! | TTTGGGTCAATGCTGGATTT+TGG | - | chr6_1:92629893-92629912 | Msa0898510:CDS | 40.0% |
| ! | ATTGAAGTTTTGCAGAAGGC+AGG | - | chr6_1:92629932-92629951 | Msa0898510:intron | 40.0% |
| !! | ATGACCGTTTTTCTGACAGT+AGG | + | chr6_1:92630100-92630119 | None:intergenic | 40.0% |
| AAAATATTCGGTTCACTGCC+TGG | - | chr6_1:92630481-92630500 | Msa0898510:intron | 40.0% | |
| CTGCCTGGATTGAAATTACA+AGG | - | chr6_1:92630496-92630515 | Msa0898510:intron | 40.0% | |
| ! | GAAGCATATGTCTGAAGCTA+TGG | - | chr6_1:92630522-92630541 | Msa0898510:intron | 40.0% |
| TAAGAGCAAGAGAAGAGAAG+AGG | - | chr6_1:92630548-92630567 | Msa0898510:intron | 40.0% | |
| AAGAGCAAGAGAAGAGAAGA+GGG | - | chr6_1:92630549-92630568 | Msa0898510:intron | 40.0% | |
| !! | CAATGGCAAGAGCTTTGAAT+TGG | - | chr6_1:92630584-92630603 | Msa0898510:intron | 40.0% |
| AATAAGTCATGGTGAGTTCG+TGG | - | chr6_1:92630632-92630651 | Msa0898510:intron | 40.0% | |
| CACTCATGACCAATAACCAT+TGG | + | chr6_1:92630962-92630981 | None:intergenic | 40.0% | |
| TTATTGGTCATGAGTGTGCT+GGG | - | chr6_1:92630966-92630985 | Msa0898510:intron | 40.0% | |
| TGGTGGTCAGATAAAGACTT+TGG | - | chr6_1:92631003-92631022 | Msa0898510:intron | 40.0% | |
| ! | CAGATAAAGACTTTGGTGAC+GGG | - | chr6_1:92631010-92631029 | Msa0898510:intron | 40.0% |
| GTTATAGCGCTTTAGTGTAG+TGG | - | chr6_1:92631313-92631332 | Msa0898510:CDS | 40.0% | |
| AATCCGAAACTAGATTCCTG+CGG | - | chr6_1:92631400-92631419 | Msa0898510:CDS | 40.0% | |
| GATTCTTGAGCCTATTCTGT+AGG | + | chr6_1:92631857-92631876 | None:intergenic | 40.0% | |
| CATGTACAGGTACAGAAACA+GGG | + | chr6_1:92631940-92631959 | None:intergenic | 40.0% | |
| ACATGTACAGGTACAGAAAC+AGG | + | chr6_1:92631941-92631960 | None:intergenic | 40.0% | |
| TTGGCATTCTAAGCTTTCCA+AGG | - | chr6_1:92632023-92632042 | Msa0898510:intron | 40.0% | |
| CGTTTAGTAACTAAGCTAGC+TGG | - | chr6_1:92632267-92632286 | Msa0898510:intron | 40.0% | |
| CATTACTTACCATAAGGGAG+AGG | - | chr6_1:92632428-92632447 | Msa0898510:intron | 40.0% | |
| AGAAAAGTTCCTCTCCCTTA+TGG | + | chr6_1:92632440-92632459 | None:intergenic | 40.0% | |
| ! | AGGGAGAGGAACTTTTCTAA+TGG | - | chr6_1:92632442-92632461 | Msa0898510:intron | 40.0% |
| CATTATGCATATTGTTGCGC+AGG | - | chr6_1:92632528-92632547 | Msa0898510:five_prime_UTR | 40.0% | |
| TAACTTAGTGTGCACCAACT+GGG | + | chr6_1:92632634-92632653 | None:intergenic | 40.0% | |
| TCCTCATGTGCCTTTATACT+TGG | - | chr6_1:92632767-92632786 | Msa0898510:five_prime_UTR | 40.0% | |
| ! | TCCAAGTATAAAGGCACATG+AGG | + | chr6_1:92632771-92632790 | None:intergenic | 40.0% |
| GAATTGTTTACCAAGAACCC+TGG | - | chr6_1:92632919-92632938 | Msa0898510:five_prime_UTR | 40.0% | |
| GCGTGAGATGTTTAGAGAGA+AGG | + | chr6_1:92629482-92629501 | None:intergenic | 45.0% | |
| !! | CTAAGTTTGATGGATTGGGG+TGG | + | chr6_1:92629519-92629538 | None:intergenic | 45.0% |
| CTGAAAGTTTGGGTCAATGC+TGG | - | chr6_1:92629886-92629905 | Msa0898510:CDS | 45.0% | |
| GTTATTGGTCATGAGTGTGC+TGG | - | chr6_1:92630965-92630984 | Msa0898510:intron | 45.0% | |
| GCTGGGATCATTGAAGAAGT+TGG | - | chr6_1:92630983-92631002 | Msa0898510:intron | 45.0% | |
| GGGATCATTGAAGAAGTTGG+TGG | - | chr6_1:92630986-92631005 | Msa0898510:intron | 45.0% | |
| TTTGCTACTCCACCAGTTCA+TGG | - | chr6_1:92631124-92631143 | Msa0898510:intron | 45.0% | |
| ! | CTACCGCAGGAATCTAGTTT+CGG | + | chr6_1:92631406-92631425 | None:intergenic | 45.0% |
| AGAGGCTCACACATGACATT+TGG | + | chr6_1:92632568-92632587 | None:intergenic | 45.0% | |
| GTAACTTAGTGTGCACCAAC+TGG | + | chr6_1:92632635-92632654 | None:intergenic | 45.0% | |
| GGAATGTGTGCACAATCACT+AGG | - | chr6_1:92632788-92632807 | Msa0898510:five_prime_UTR | 45.0% | |
| CGAAGTAGACTTCATGACCA+GGG | + | chr6_1:92632939-92632958 | None:intergenic | 45.0% | |
| CCTGGTCATGAAGTCTACTT+CGG | - | chr6_1:92632937-92632956 | Msa0898510:five_prime_UTR | 45.0% | |
| TTCGGCTCTACTGTAAAGCA+AGG | - | chr6_1:92632955-92632974 | Msa0898510:five_prime_UTR | 45.0% | |
| TGTAAAGCAAGGAGAACTCG+AGG | - | chr6_1:92632966-92632985 | Msa0898510:five_prime_UTR | 45.0% | |
| GAGGCGATTGTAATTGCTAC+TGG | - | chr6_1:92632985-92633004 | Msa0898510:five_prime_UTR | 45.0% | |
| !!! | TATAAATATAATTTTAGTTT+TGG | + | chr6_1:92632000-92632019 | None:intergenic | 5.0% |
| !! | TAAAATTATATTTATAATCT+TGG | - | chr6_1:92632004-92632023 | Msa0898510:intron | 5.0% |
| !! | TGATGGATTGGGGTGGAAGA+AGG | + | chr6_1:92629512-92629531 | None:intergenic | 50.0% |
| GCTAGGAGGGAAAAGAGGAA+AGG | + | chr6_1:92629629-92629648 | None:intergenic | 50.0% | |
| GTTCAGCTAGGAGGGAAAAG+AGG | + | chr6_1:92629634-92629653 | None:intergenic | 50.0% | |
| GTGGTTGAGTTCAGCTAGGA+GGG | + | chr6_1:92629642-92629661 | None:intergenic | 50.0% | |
| TGTGGTTGAGTTCAGCTAGG+AGG | + | chr6_1:92629643-92629662 | None:intergenic | 50.0% | |
| GCTTGTGGTTGAGTTCAGCT+AGG | + | chr6_1:92629646-92629665 | None:intergenic | 50.0% | |
| GGAAGAATGAGGCTAGGGTT+TGG | - | chr6_1:92629765-92629784 | Msa0898510:three_prime_UTR | 50.0% | |
| TTGTTCTGCTGCTGGAAGAG+TGG | - | chr6_1:92629788-92629807 | Msa0898510:three_prime_UTR | 50.0% | |
| TGTTCTGCTGCTGGAAGAGT+GGG | - | chr6_1:92629789-92629808 | Msa0898510:three_prime_UTR | 50.0% | |
| AGAAGGCAGGAACTATGAGC+TGG | - | chr6_1:92629945-92629964 | Msa0898510:intron | 50.0% | |
| AGAGAAGAGAAGAGGGCTGA+AGG | - | chr6_1:92630556-92630575 | Msa0898510:intron | 50.0% | |
| GAGAAGAGAAGAGGGCTGAA+GGG | - | chr6_1:92630557-92630576 | Msa0898510:intron | 50.0% | |
| !! | TCGAGCCTGGGATTAGTTGT+TGG | - | chr6_1:92631047-92631066 | Msa0898510:intron | 50.0% |
| CAACGCCAACAACTAATCCC+AGG | + | chr6_1:92631055-92631074 | None:intergenic | 50.0% | |
| TTAGCGAGTGAGCCATGAAC+TGG | + | chr6_1:92631139-92631158 | None:intergenic | 50.0% | |
| TCATGGCTCACTCGCTAATC+AGG | - | chr6_1:92631141-92631160 | Msa0898510:intron | 50.0% | |
| CGAACATGATGAGAATCGCC+AGG | - | chr6_1:92632852-92632871 | Msa0898510:five_prime_UTR | 50.0% | |
| GACTTCATGACCAGGGTTCT+TGG | + | chr6_1:92632932-92632951 | None:intergenic | 50.0% | |
| CCGAAGTAGACTTCATGACC+AGG | + | chr6_1:92632940-92632959 | None:intergenic | 50.0% | |
| GGATTGGGGTGGAAGAAGGA+GGG | + | chr6_1:92629508-92629527 | None:intergenic | 55.0% | |
| ! | TGGATTGGGGTGGAAGAAGG+AGG | + | chr6_1:92629509-92629528 | None:intergenic | 55.0% |
| ! | GGGTTTGGTTGTTCTGCTGC+TGG | - | chr6_1:92629780-92629799 | Msa0898510:three_prime_UTR | 55.0% |
| GAGGGCTGAAGGGATAGCAA+TGG | - | chr6_1:92630567-92630586 | Msa0898510:intron | 55.0% | |
| ACCGTGTGACAATCGAGCCT+GGG | - | chr6_1:92631035-92631054 | Msa0898510:intron | 55.0% | |
| TCCCAGGCTCGATTGTCACA+CGG | + | chr6_1:92631039-92631058 | None:intergenic | 55.0% | |
| TGGGGTGGAAGAAGGAGGGA+AGG | + | chr6_1:92629504-92629523 | None:intergenic | 60.0% | |
| CTGCTGCTGGAAGAGTGGGT+AGG | - | chr6_1:92629793-92629812 | Msa0898510:three_prime_UTR | 60.0% | |
| GACCGTGTGACAATCGAGCC+TGG | - | chr6_1:92631034-92631053 | Msa0898510:intron | 60.0% | |
| GCGAGTGAGCCATGAACTGG+TGG | + | chr6_1:92631136-92631155 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 92629439 | 92633024 | 92629439 | ID=Msa0898510;Name=Msa0898510 |
| chr6_1 | mRNA | 92629439 | 92633024 | 92629439 | ID=Msa0898510-mRNA-1;Parent=Msa0898510;Name=Msa0898510-mRNA-1;_AED=0.36;_eAED=0.36;_QI=557|0.5|1|1|0.5|0.66|3|400|104 |
| chr6_1 | exon | 92629439 | 92629913 | 92629439 | ID=Msa0898510-mRNA-1:exon:15632;Parent=Msa0898510-mRNA-1 |
| chr6_1 | exon | 92631301 | 92631537 | 92631301 | ID=Msa0898510-mRNA-1:exon:15631;Parent=Msa0898510-mRNA-1 |
| chr6_1 | exon | 92632465 | 92633024 | 92632465 | ID=Msa0898510-mRNA-1:exon:15630;Parent=Msa0898510-mRNA-1 |
| chr6_1 | five_prime_UTR | 92632468 | 92633024 | 92632468 | ID=Msa0898510-mRNA-1:five_prime_utr;Parent=Msa0898510-mRNA-1 |
| chr6_1 | CDS | 92632465 | 92632467 | 92632465 | ID=Msa0898510-mRNA-1:cds;Parent=Msa0898510-mRNA-1 |
| chr6_1 | CDS | 92631301 | 92631537 | 92631301 | ID=Msa0898510-mRNA-1:cds;Parent=Msa0898510-mRNA-1 |
| chr6_1 | CDS | 92629839 | 92629913 | 92629839 | ID=Msa0898510-mRNA-1:cds;Parent=Msa0898510-mRNA-1 |
| chr6_1 | three_prime_UTR | 92629439 | 92629838 | 92629439 | ID=Msa0898510-mRNA-1:three_prime_utr;Parent=Msa0898510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
