AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1044420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044420 MtrunA17_Chr4g0002171 97.391 460 12 0 1 460 1 460 0.0 926
Msa1044420 MtrunA17_Chr2g0297971 28.224 411 249 17 32 431 216 591 6.13e-33 131
Msa1044420 MtrunA17_Chr2g0297971 28.111 217 129 8 219 433 282 473 2.58e-15 78.6
Msa1044420 MtrunA17_Chr8g0391901 27.139 409 254 15 32 431 238 611 2.40e-31 127
Msa1044420 MtrunA17_Chr1g0192821 28.679 265 150 12 172 434 25 252 5.15e-16 80.5
Msa1044420 MtrunA17_Chr1g0192821 28.986 345 189 17 118 460 25 315 1.93e-15 79.0
Msa1044420 MtrunA17_Chr1g0198221 30.916 262 153 12 172 431 17 252 3.91e-15 77.4
Msa1044420 MtrunA17_Chr1g0198221 26.642 274 165 15 118 379 74 323 5.84e-11 64.3
Msa1044420 MtrunA17_Chr2g0286241 27.119 236 142 8 203 433 59 269 6.08e-13 71.2
Msa1044420 MtrunA17_Chr1g0196221 26.441 295 182 11 153 435 8 279 1.85e-12 69.3
Msa1044420 MtrunA17_Chr1g0197401 26.549 226 123 8 219 431 14 209 2.21e-12 68.9
Msa1044420 MtrunA17_Chr2g0322121 28.319 226 123 8 172 369 81 295 8.65e-12 67.8
Msa1044420 MtrunA17_Chr2g0311721 26.877 253 148 12 120 366 20 241 1.83e-11 65.1
Msa1044420 MtrunA17_Chr4g0061581 23.810 357 222 14 116 459 20 339 3.22e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044420 AT1G51550.1 59.735 452 162 6 18 458 21 463 0.0 526
Msa1044420 AT2G18915.1 29.584 409 244 18 32 431 204 577 1.53e-35 139
Msa1044420 AT2G18915.1 28.358 268 133 9 219 436 270 528 3.01e-16 81.6
Msa1044420 AT2G18915.2 29.340 409 245 18 32 431 214 587 2.14e-35 139
Msa1044420 AT2G18915.2 28.358 268 133 9 219 436 280 538 3.40e-16 81.6
Msa1044420 AT5G57360.2 28.710 411 247 18 32 431 213 588 3.68e-33 132
Msa1044420 AT5G57360.1 28.710 411 247 18 32 431 213 588 4.22e-33 132
Msa1044420 AT1G68050.1 28.501 407 246 19 32 431 227 595 3.14e-32 130
Msa1044420 AT1G18610.1 25.648 347 208 16 118 451 22 331 1.87e-13 72.8
Msa1044420 AT1G18610.2 25.648 347 208 16 118 451 22 331 1.87e-13 72.8
Msa1044420 AT1G08420.2 28.136 295 153 13 172 435 102 368 5.88e-13 71.6
Msa1044420 AT1G08420.1 28.136 295 153 13 172 435 102 368 6.00e-13 71.6
Msa1044420 AT2G27210.2 27.458 295 155 13 172 435 91 357 1.52e-12 70.5
Msa1044420 AT2G27210.1 27.458 295 155 13 172 435 91 357 1.61e-12 70.5
Msa1044420 AT2G36360.5 28.060 335 186 18 118 430 17 318 4.28e-12 68.6
Msa1044420 AT2G36360.4 27.273 330 186 16 118 430 17 309 7.11e-12 67.8
Msa1044420 AT2G36360.2 27.273 330 186 16 118 430 17 309 7.18e-12 67.8
Msa1044420 AT2G36360.1 27.273 330 186 16 118 430 17 309 7.18e-12 67.8
Msa1044420 AT2G36360.3 27.273 330 186 16 118 430 17 309 7.82e-12 67.8

Find 124 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 7_2:+2742057 Msa1044420:CDS
CTATTAGCATTATAGGTTTA+TGG 0.143983 7_2:+2742564 Msa1044420:three_prime_UTR
GAGTGAGAAGCTCTTGCTTT+AGG 0.168448 7_2:-2740298 None:intergenic
GGTGATTTCCTTGTTCTCTT+TGG 0.218840 7_2:+2741538 Msa1044420:CDS
GCATTGTCTATTAGCATTAT+AGG 0.230546 7_2:+2742557 Msa1044420:three_prime_UTR
GACTTCACGGCCTTCGTTTA+GGG 0.260841 7_2:+2741746 Msa1044420:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 7_2:+2741927 Msa1044420:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 7_2:+2741745 Msa1044420:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 7_2:+2742297 Msa1044420:CDS
TCTTGAGGTATGTTGGTTAT+TGG 0.294095 7_2:-2739995 None:intergenic
AATACAGCAACTACTCAATT+AGG 0.317271 7_2:+2742505 Msa1044420:three_prime_UTR
CAGGGTTTGTTTGAGGTAGA+TGG 0.319353 7_2:-2739821 None:intergenic
AGTGAGAAGCTCTTGCTTTA+GGG 0.320830 7_2:-2740297 None:intergenic
AGAGAAAGAATTGCATCTAT+AGG 0.321173 7_2:-2740046 None:intergenic
TCTGACTGTCTTGTCTTGTT+TGG 0.342606 7_2:+2740334 Msa1044420:CDS
ATGGTAATCCATGGAGGAAT+TGG 0.346210 7_2:+2741724 Msa1044420:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 7_2:+2742303 Msa1044420:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 7_2:+2742263 Msa1044420:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 7_2:+2741866 Msa1044420:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 7_2:+2741496 Msa1044420:CDS
CTAGTGGTTTCTTCCATGTC+TGG 0.368544 7_2:-2739941 None:intergenic
TCAACTCTAAGGACTAATTA+AGG 0.370650 7_2:+2742362 Msa1044420:exon
GGTCGTTATTTGTATGTGTT+TGG 0.379139 7_2:+2742255 Msa1044420:CDS
GAGAAAGAATTGCATCTATA+GGG 0.385396 7_2:-2740045 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 7_2:-2741462 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 7_2:+2742234 Msa1044420:CDS
GACTGTCTTGTCTTGTTTGG+TGG 0.399377 7_2:+2740337 Msa1044420:CDS
ATCTATGGTTTGATGCTTGT+TGG 0.401918 7_2:-2739896 None:intergenic
ATATGTCATATTGAAGATAA+TGG 0.402492 7_2:-2739759 None:intergenic
TTGTCAGATAGTCATTGTTT+CGG 0.403264 7_2:+2741787 Msa1044420:CDS
TGGTCATACATGTGTAGAAA+TGG 0.403859 7_2:+2741516 Msa1044420:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 7_2:+2741475 Msa1044420:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 7_2:+2741835 Msa1044420:CDS
GCTTGTGTTTGGCAGAAGAC+AGG 0.409294 7_2:-2739840 None:intergenic
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 7_2:+2741541 Msa1044420:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 7_2:+2742314 Msa1044420:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 7_2:+2741643 Msa1044420:CDS
TAGATGGTGTGGTAGAGAAT+TGG 0.419249 7_2:-2739805 None:intergenic
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 7_2:+2742351 Msa1044420:CDS
CATGGAAAATGATAGATGTT+GGG 0.424832 7_2:+2741644 Msa1044420:CDS
AGTTATAATCAAAATTATAG+TGG 0.432532 7_2:+2739968 Msa1044420:CDS
TTGTTTGGTGGTGGCTGTGA+TGG 0.433357 7_2:+2740349 Msa1044420:CDS
ACTCAAGTCTCTCTTGCATA+AGG 0.439993 7_2:-2740125 None:intergenic
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 7_2:-2742303 None:intergenic
TTTGAACTTACTGTGGTTGA+AGG 0.443599 7_2:-2742141 None:intergenic
TGTCTTGTCTTGTTTGGTGG+TGG 0.453433 7_2:+2740340 Msa1044420:CDS
TGGAAACGATGGAAATCAAA+TGG 0.459866 7_2:+2742183 Msa1044420:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 7_2:+2741666 Msa1044420:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 7_2:+2742060 Msa1044420:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.461693 7_2:+2741458 Msa1044420:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 7_2:+2741583 Msa1044420:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 7_2:+2742270 Msa1044420:CDS
CAGAAGACAGGGTTTGTTTG+AGG 0.469784 7_2:-2739828 None:intergenic
ATGAAGTGCTTCATGATGTA+TGG 0.478974 7_2:+2741920 Msa1044420:CDS
CTTGCCAAGGTTACATGAGA+TGG 0.479976 7_2:+2741953 Msa1044420:CDS
GATGTAATCTTGAGGTATGT+TGG 0.481435 7_2:-2740002 None:intergenic
CTTGTGTTTGGCAGAAGACA+GGG 0.482677 7_2:-2739839 None:intergenic
CGTTATTTGTATGTGTTTGG+TGG 0.484542 7_2:+2742258 Msa1044420:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 7_2:+2741856 Msa1044420:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 7_2:-2741835 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 7_2:+2741556 Msa1044420:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 7_2:+2742163 Msa1044420:CDS
CATGGAGGAATTGGACTTCA+CGG 0.495304 7_2:+2741733 Msa1044420:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 7_2:+2742012 Msa1044420:CDS
CTTATCTGATTGAAAATACA+TGG 0.496690 7_2:-2742437 None:intergenic
ATAGTCATTGTTTCGGCACA+TGG 0.499649 7_2:+2741794 Msa1044420:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 7_2:-2741676 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 7_2:+2741665 Msa1044420:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 7_2:+2742266 Msa1044420:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 7_2:+2742029 Msa1044420:CDS
CATAAATTGTCATACCCTCA+TGG 0.513611 7_2:+2740262 Msa1044420:CDS
TTTGAATCTCTTGCATGTCA+TGG 0.513878 7_2:-2740071 None:intergenic
CTAGGAAGTGAAATACCATC+TGG 0.516166 7_2:-2742006 None:intergenic
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 7_2:+2741747 Msa1044420:CDS
TTGCATCTATAGGGAGAAGA+AGG 0.528249 7_2:-2740036 None:intergenic
ACTTACTGTGGTTGAAGGAA+TGG 0.535489 7_2:-2742136 None:intergenic
AACGTGGCGGAGGCGATGGA+TGG 0.538917 7_2:-2741831 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 7_2:-2741841 None:intergenic
AAACTGATGAACATGGTGCT+TGG 0.551663 7_2:-2740188 None:intergenic
CACTCTCTTTGAACTTACTG+TGG 0.552899 7_2:-2742148 None:intergenic
GAATCCATCTCATGTAACCT+TGG 0.555112 7_2:-2741957 None:intergenic
CTATAAGCAAATATATCAGA+TGG 0.558115 7_2:+2740225 Msa1044420:CDS
GTAGCAGTGTGACCAACTCT+AGG 0.558419 7_2:-2742024 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 7_2:+2742082 Msa1044420:CDS
TGGTTATTGGATACTTGCCA+AGG 0.561263 7_2:+2741940 Msa1044420:CDS
TTTGGTGGTGGCTGTGATGG+AGG 0.563680 7_2:+2740352 Msa1044420:CDS
TTGCATCGACGACAAGAGAA+TGG 0.566710 7_2:+2741705 Msa1044420:CDS
GGTCATACATGTGTAGAAAT+GGG 0.572564 7_2:+2741517 Msa1044420:CDS
ATATGCTACACATGACATAG+TGG 0.573189 7_2:-2742409 None:intergenic
AGACTTGAGTTCAACATGTG+TGG 0.574605 7_2:+2740138 Msa1044420:CDS
GACAAGAGAATGGTAATCCA+TGG 0.574745 7_2:+2741715 Msa1044420:CDS
GACGACACCTTGATGACACA+TGG 0.581104 7_2:+2741416 Msa1044420:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 7_2:+2741578 Msa1044420:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 7_2:+2741755 Msa1044420:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 7_2:-2741546 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 7_2:-2741682 None:intergenic
TTGATTATAACTAACACTAG+TGG 0.606440 7_2:-2739957 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 7_2:-2742312 None:intergenic
GATTTACAAAACATACCAGA+TGG 0.608221 7_2:+2741991 Msa1044420:CDS
TTTGTTTGAGGTAGATGGTG+TGG 0.609636 7_2:-2739816 None:intergenic
ATGCCACCCATGTGTCATCA+AGG 0.622366 7_2:-2741423 None:intergenic
GACACATGGGTGGCATACAT+TGG 0.624790 7_2:+2741430 Msa1044420:CDS
ACATACAAATAACGACCAGA+AGG 0.627124 7_2:-2742249 None:intergenic
GTATGACCAAATCTTCCACT+TGG 0.629532 7_2:-2741502 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 7_2:-2741732 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 7_2:-2741679 None:intergenic
GGAAATCTAAATCTCCATGA+GGG 0.645796 7_2:-2740276 None:intergenic
CGATGAAACGATCTAGACTT+CGG 0.657515 7_2:-2742213 None:intergenic
GTTACACACAATGAAAACAA+AGG 0.659251 7_2:+2741610 Msa1044420:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 7_2:-2741847 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 7_2:+2741487 Msa1044420:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 7_2:-2741756 None:intergenic
GGGAAATCTAAATCTCCATG+AGG 0.678724 7_2:-2740277 None:intergenic
ACACCTTGATGACACATGGG+TGG 0.680411 7_2:+2741420 Msa1044420:CDS
AGTGTTGCTCCACCACCTAG+GGG 0.681365 7_2:+2741667 Msa1044420:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 7_2:-2742238 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.692057 7_2:+2742157 Msa1044420:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 7_2:+2742172 Msa1044420:CDS
ATAGTGAAGATGTAATCTTG+AGG 0.705437 7_2:-2740010 None:intergenic
ACGACACCTTGATGACACAT+GGG 0.706425 7_2:+2741417 Msa1044420:CDS
AAGAGAATGGTAATCCATGG+AGG 0.711153 7_2:+2741718 Msa1044420:CDS
TAACTTCGTCTGAAACACTG+TGG 0.716627 7_2:+2740098 Msa1044420:CDS
TCCATGAAAACTGATGAACA+TGG 0.786513 7_2:-2740195 None:intergenic
AACGTGTGTCCTGAACGTGG+CGG 0.807074 7_2:-2741844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTATGTTTTGTTTTTT+TGG - chr7_2:2739869-2739888 None:intergenic 15.0%
!! AGTTATAATCAAAATTATAG+TGG + chr7_2:2739968-2739987 Msa1044420:CDS 15.0%
!! AAATAGAAAGAAAAAAAACA+TGG - chr7_2:2740391-2740410 None:intergenic 15.0%
!!! TATAAAGATTGATTTTTGAC+AGG - chr7_2:2739725-2739744 None:intergenic 20.0%
!! ATATGTCATATTGAAGATAA+TGG - chr7_2:2739762-2739781 None:intergenic 20.0%
!!! TTATGTTTTGTTTTTTTGGT+TGG - chr7_2:2739865-2739884 None:intergenic 20.0%
!!! GTTTTTTTTCTTTCTATTTG+TGG + chr7_2:2740392-2740411 Msa1044420:intron 20.0%
!!! GTATTGACTTAAAAATTAGA+CGG - chr7_2:2740729-2740748 None:intergenic 20.0%
!! TTACAGTAATTGATGTAAAT+CGG + chr7_2:2741047-2741066 Msa1044420:intron 20.0%
!! TGTATAAATAATTCATATGG+TGG - chr7_2:2741204-2741223 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG - chr7_2:2741207-2741226 None:intergenic 20.0%
!!! GTGAAAATTGTAAAAACTTT+TGG + chr7_2:2742535-2742554 Msa1044420:three_prime_UTR 20.0%
!!! TTTTTTGTTGAAGCTATCTA+TGG - chr7_2:2739914-2739933 None:intergenic 25.0%
! AAAAAACAAAAAACCAGACA+TGG + chr7_2:2739928-2739947 Msa1044420:exon 25.0%
! TTGATTATAACTAACACTAG+TGG - chr7_2:2739960-2739979 None:intergenic 25.0%
! CTATAAGCAAATATATCAGA+TGG + chr7_2:2740225-2740244 Msa1044420:CDS 25.0%
! ATTATTTACCCTAAAGAGAA+AGG + chr7_2:2740550-2740569 Msa1044420:intron 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG - chr7_2:2740561-2740580 None:intergenic 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG - chr7_2:2740562-2740581 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG + chr7_2:2740561-2740580 Msa1044420:intron 25.0%
!! TTAGAAGTTGATTACAGTTT+AGG + chr7_2:2740938-2740957 Msa1044420:intron 25.0%
! TACAGTAATTGATGTAAATC+GGG + chr7_2:2741048-2741067 Msa1044420:intron 25.0%
! AGGTAAAAAAATCCTTCTTA+TGG - chr7_2:2741123-2741142 None:intergenic 25.0%
! AAGTTTCAAGGACTATATAT+AGG - chr7_2:2741153-2741172 None:intergenic 25.0%
!! TTATTTATACACTGCCTTTT+TGG + chr7_2:2741213-2741232 Msa1044420:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG + chr7_2:2741394-2741413 Msa1044420:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG + chr7_2:2741458-2741477 Msa1044420:CDS 25.0%
!! AGAAATAGGACAATACTTTT+TGG + chr7_2:2741880-2741899 Msa1044420:CDS 25.0%
!! ACATAGGAAAAATGACTTTT+GGG + chr7_2:2742098-2742117 Msa1044420:CDS 25.0%
! CTTATCTGATTGAAAATACA+TGG - chr7_2:2742440-2742459 None:intergenic 25.0%
! CTATTAGCATTATAGGTTTA+TGG + chr7_2:2742564-2742583 Msa1044420:three_prime_UTR 25.0%
!! ATTGATTTTTGACAGGTTAG+TGG - chr7_2:2739718-2739737 None:intergenic 30.0%
ATAGTGAAGATGTAATCTTG+AGG - chr7_2:2740013-2740032 None:intergenic 30.0%
GAGAAAGAATTGCATCTATA+GGG - chr7_2:2740048-2740067 None:intergenic 30.0%
AGAGAAAGAATTGCATCTAT+AGG - chr7_2:2740049-2740068 None:intergenic 30.0%
TTTCATAAGTGAGATTCACA+TGG + chr7_2:2740445-2740464 Msa1044420:intron 30.0%
GTATCGTAATTGTTACAATG+AGG + chr7_2:2740688-2740707 Msa1044420:intron 30.0%
TTAGACCGTTAATAGACAAA+AGG + chr7_2:2740795-2740814 Msa1044420:intron 30.0%
TACTTGATCTTACCATAAGA+AGG + chr7_2:2741108-2741127 Msa1044420:intron 30.0%
!!! AAGAAGGATTTTTTTACCTG+TGG + chr7_2:2741124-2741143 Msa1044420:intron 30.0%
ATTAGTCAAATCTCGACTAT+TGG + chr7_2:2741250-2741269 Msa1044420:intron 30.0%
TCTTCCATTTCAATATTCTC+TGG - chr7_2:2741465-2741484 None:intergenic 30.0%
! CAATCCATGTATCATTTTGA+CGG - chr7_2:2741585-2741604 None:intergenic 30.0%
GTTACACACAATGAAAACAA+AGG + chr7_2:2741610-2741629 Msa1044420:CDS 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG + chr7_2:2741626-2741645 Msa1044420:CDS 30.0%
TCATGGAAAATGATAGATGT+TGG + chr7_2:2741643-2741662 Msa1044420:CDS 30.0%
CATGGAAAATGATAGATGTT+GGG + chr7_2:2741644-2741663 Msa1044420:CDS 30.0%
TTGTCAGATAGTCATTGTTT+CGG + chr7_2:2741787-2741806 Msa1044420:CDS 30.0%
!! AATAGGACAATACTTTTTGG+AGG + chr7_2:2741883-2741902 Msa1044420:CDS 30.0%
GATTTACAAAACATACCAGA+TGG + chr7_2:2741991-2742010 Msa1044420:CDS 30.0%
! GACATAGGAAAAATGACTTT+TGG + chr7_2:2742097-2742116 Msa1044420:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG + chr7_2:2742327-2742346 Msa1044420:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG + chr7_2:2742328-2742347 Msa1044420:CDS 30.0%
! TCAACTCTAAGGACTAATTA+AGG + chr7_2:2742362-2742381 Msa1044420:exon 30.0%
AATACAGCAACTACTCAATT+AGG + chr7_2:2742505-2742524 Msa1044420:three_prime_UTR 30.0%
GCATTGTCTATTAGCATTAT+AGG + chr7_2:2742557-2742576 Msa1044420:three_prime_UTR 30.0%
GGTAGAGAATTGGTAAAAAC+TGG - chr7_2:2739798-2739817 None:intergenic 35.0%
!!! TTTTTTGGTTGGCTTGTGTT+TGG - chr7_2:2739854-2739873 None:intergenic 35.0%
ATCTATGGTTTGATGCTTGT+TGG - chr7_2:2739899-2739918 None:intergenic 35.0%
! TCTTGAGGTATGTTGGTTAT+TGG - chr7_2:2739998-2740017 None:intergenic 35.0%
GATGTAATCTTGAGGTATGT+TGG - chr7_2:2740005-2740024 None:intergenic 35.0%
TTTGAATCTCTTGCATGTCA+TGG - chr7_2:2740074-2740093 None:intergenic 35.0%
! ACCATGTTCATCAGTTTTCA+TGG + chr7_2:2740194-2740213 Msa1044420:CDS 35.0%
TCCATGAAAACTGATGAACA+TGG - chr7_2:2740198-2740217 None:intergenic 35.0%
CATAAATTGTCATACCCTCA+TGG + chr7_2:2740262-2740281 Msa1044420:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG - chr7_2:2740279-2740298 None:intergenic 35.0%
!!! ATGGCTTCTAGTTTTAGACT+AGG + chr7_2:2740464-2740483 Msa1044420:intron 35.0%
ATTAGACGGTTAGTAGACAA+AGG - chr7_2:2740715-2740734 None:intergenic 35.0%
ACACTAACTTAGACCAACAT+TGG + chr7_2:2740747-2740766 Msa1044420:intron 35.0%
! CAGGTCCTTTTGTCTATTAA+CGG - chr7_2:2740803-2740822 None:intergenic 35.0%
AAGGACCTGATTGTAACAAT+TGG + chr7_2:2740814-2740833 Msa1044420:intron 35.0%
AGGACCTGATTGTAACAATT+GGG + chr7_2:2740815-2740834 Msa1044420:intron 35.0%
TGATTACAGTTTAGGTGATG+TGG + chr7_2:2740946-2740965 Msa1044420:intron 35.0%
GGGACATAATCTAAGTTTCA+AGG - chr7_2:2741165-2741184 None:intergenic 35.0%
! CTTAGATTATGTCCCAGTTT+TGG + chr7_2:2741170-2741189 Msa1044420:intron 35.0%
!!! CTAGGTTTTGAAGTCCAAAA+AGG - chr7_2:2741230-2741249 None:intergenic 35.0%
AGTCGAGATTTGACTAATCT+AGG - chr7_2:2741248-2741267 None:intergenic 35.0%
AAATGGAAGACAGTTCATTC+AGG + chr7_2:2741475-2741494 Msa1044420:CDS 35.0%
TGGTCATACATGTGTAGAAA+TGG + chr7_2:2741516-2741535 Msa1044420:CDS 35.0%
GGTCATACATGTGTAGAAAT+GGG + chr7_2:2741517-2741536 Msa1044420:CDS 35.0%
GAAACCGTCAAAATGATACA+TGG + chr7_2:2741578-2741597 Msa1044420:CDS 35.0%
CGTCAAAATGATACATGGAT+TGG + chr7_2:2741583-2741602 Msa1044420:CDS 35.0%
! TGACTTGCATTGGAAGAAAT+AGG + chr7_2:2741866-2741885 Msa1044420:CDS 35.0%
!! ACAATACTTTTTGGAGGTAG+AGG + chr7_2:2741889-2741908 Msa1044420:CDS 35.0%
! ATGAAGTGCTTCATGATGTA+TGG + chr7_2:2741920-2741939 Msa1044420:CDS 35.0%
GCTTCATGATGTATGGTTAT+TGG + chr7_2:2741927-2741946 Msa1044420:CDS 35.0%
GGAGGTAGGTTGTTAATTTA+TGG + chr7_2:2742057-2742076 Msa1044420:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG + chr7_2:2742060-2742079 Msa1044420:CDS 35.0%
TTTGAACTTACTGTGGTTGA+AGG - chr7_2:2742144-2742163 None:intergenic 35.0%
TGGAAACGATGGAAATCAAA+TGG + chr7_2:2742183-2742202 Msa1044420:CDS 35.0%
ACATACAAATAACGACCAGA+AGG - chr7_2:2742252-2742271 None:intergenic 35.0%
GGTCGTTATTTGTATGTGTT+TGG + chr7_2:2742255-2742274 Msa1044420:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG + chr7_2:2742258-2742277 Msa1044420:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG + chr7_2:2742263-2742282 Msa1044420:CDS 35.0%
TTATCAAATCCAAGTCCAGA+AGG - chr7_2:2742315-2742334 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG + chr7_2:2742314-2742333 Msa1044420:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG + chr7_2:2742329-2742348 Msa1044420:CDS 35.0%
ATATGCTACACATGACATAG+TGG - chr7_2:2742412-2742431 None:intergenic 35.0%
TAGATGGTGTGGTAGAGAAT+TGG - chr7_2:2739808-2739827 None:intergenic 40.0%
! TTTGTTTGAGGTAGATGGTG+TGG - chr7_2:2739819-2739838 None:intergenic 40.0%
TTGCATCTATAGGGAGAAGA+AGG - chr7_2:2740039-2740058 None:intergenic 40.0%
! TAACTTCGTCTGAAACACTG+TGG + chr7_2:2740098-2740117 Msa1044420:CDS 40.0%
ACTCAAGTCTCTCTTGCATA+AGG - chr7_2:2740128-2740147 None:intergenic 40.0%
AGACTTGAGTTCAACATGTG+TGG + chr7_2:2740138-2740157 Msa1044420:CDS 40.0%
AAACTGATGAACATGGTGCT+TGG - chr7_2:2740191-2740210 None:intergenic 40.0%
GGGAAATCTAAATCTCCATG+AGG - chr7_2:2740280-2740299 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG - chr7_2:2740300-2740319 None:intergenic 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG + chr7_2:2740334-2740353 Msa1044420:CDS 40.0%
! TAGACCAACATTGGCTACAT+AGG + chr7_2:2740756-2740775 Msa1044420:intron 40.0%
ACTGCCCAATTGTTACAATC+AGG - chr7_2:2740822-2740841 None:intergenic 40.0%
!! CAATTGGGCAGTTTGCTATA+TGG + chr7_2:2740830-2740849 Msa1044420:intron 40.0%
TTGGTCCTCGTGTTTCAATT+GGG - chr7_2:2740869-2740888 None:intergenic 40.0%
TTTGGTCCTCGTGTTTCAAT+TGG - chr7_2:2740870-2740889 None:intergenic 40.0%
GGACCAAAATTGTACAATCC+TGG + chr7_2:2740882-2740901 Msa1044420:intron 40.0%
! GTGCCAGGATTGTACAATTT+TGG - chr7_2:2740888-2740907 None:intergenic 40.0%
GCATTTCATTCAACTTGCCT+AGG + chr7_2:2741078-2741097 Msa1044420:intron 40.0%
AGATCAAGTAGAAGTCTCCT+AGG - chr7_2:2741098-2741117 None:intergenic 40.0%
GACTATATATAGGAGTCCAC+AGG - chr7_2:2741143-2741162 None:intergenic 40.0%
GTGGCATAATCTCCAAAACT+GGG - chr7_2:2741185-2741204 None:intergenic 40.0%
TTTCACTAAAGACGCTTCAG+AGG + chr7_2:2741334-2741353 Msa1044420:intron 40.0%
GTATGACCAAATCTTCCACT+TGG - chr7_2:2741505-2741524 None:intergenic 40.0%
GGTGATTTCCTTGTTCTCTT+TGG + chr7_2:2741538-2741557 Msa1044420:CDS 40.0%
GATTTCCTTGTTCTCTTTGG+AGG + chr7_2:2741541-2741560 Msa1044420:CDS 40.0%
!! TTTGGAGGCATCAATGATCA+TGG + chr7_2:2741556-2741575 Msa1044420:CDS 40.0%
GACAAGAGAATGGTAATCCA+TGG + chr7_2:2741715-2741734 Msa1044420:CDS 40.0%
AAGAGAATGGTAATCCATGG+AGG + chr7_2:2741718-2741737 Msa1044420:CDS 40.0%
ATGGTAATCCATGGAGGAAT+TGG + chr7_2:2741724-2741743 Msa1044420:CDS 40.0%
ATAGTCATTGTTTCGGCACA+TGG + chr7_2:2741794-2741813 Msa1044420:CDS 40.0%
!! CTTTTTGGAGGTAGAGGTTT+AGG + chr7_2:2741895-2741914 Msa1044420:CDS 40.0%
TGGTTATTGGATACTTGCCA+AGG + chr7_2:2741940-2741959 Msa1044420:CDS 40.0%
GAATCCATCTCATGTAACCT+TGG - chr7_2:2741960-2741979 None:intergenic 40.0%
CTAGGAAGTGAAATACCATC+TGG - chr7_2:2742009-2742028 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG + chr7_2:2742012-2742031 Msa1044420:CDS 40.0%
! CACACTGCTACAATGGTTTT+AGG + chr7_2:2742036-2742055 Msa1044420:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG + chr7_2:2742039-2742058 Msa1044420:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG + chr7_2:2742043-2742062 Msa1044420:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG + chr7_2:2742082-2742101 Msa1044420:CDS 40.0%
ACTTACTGTGGTTGAAGGAA+TGG - chr7_2:2742139-2742158 None:intergenic 40.0%
CACTCTCTTTGAACTTACTG+TGG - chr7_2:2742151-2742170 None:intergenic 40.0%
CGATGAAACGATCTAGACTT+CGG - chr7_2:2742216-2742235 None:intergenic 40.0%
! CAGGGTTTGTTTGAGGTAGA+TGG - chr7_2:2739824-2739843 None:intergenic 45.0%
! CAGAAGACAGGGTTTGTTTG+AGG - chr7_2:2739831-2739850 None:intergenic 45.0%
CTTGTGTTTGGCAGAAGACA+GGG - chr7_2:2739842-2739861 None:intergenic 45.0%
CTAGTGGTTTCTTCCATGTC+TGG - chr7_2:2739944-2739963 None:intergenic 45.0%
GAGTGAGAAGCTCTTGCTTT+AGG - chr7_2:2740301-2740320 None:intergenic 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG + chr7_2:2740337-2740356 Msa1044420:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG + chr7_2:2740340-2740359 Msa1044420:CDS 45.0%
AGAGACTCAAGTCGCACAAT+TGG - chr7_2:2740665-2740684 None:intergenic 45.0%
TTGTGCGACTTGAGTCTCTT+AGG + chr7_2:2740666-2740685 Msa1044420:intron 45.0%
AGAGCCTATGTAGCCAATGT+TGG - chr7_2:2740763-2740782 None:intergenic 45.0%
!! TTGGGCAGTTTGCTATATGG+AGG + chr7_2:2740833-2740852 Msa1044420:intron 45.0%
ATTCGCCCAATTGAAACACG+AGG + chr7_2:2740861-2740880 Msa1044420:intron 45.0%
! CACTTTTGTACTCAAGTGCC+AGG - chr7_2:2740903-2740922 None:intergenic 45.0%
GGTGGCATAATCTCCAAAAC+TGG - chr7_2:2741186-2741205 None:intergenic 45.0%
! ACGACACCTTGATGACACAT+GGG + chr7_2:2741417-2741436 Msa1044420:CDS 45.0%
GTTCATTCAGGCATACCAAG+TGG + chr7_2:2741487-2741506 Msa1044420:CDS 45.0%
GGCATACCAAGTGGAAGATT+TGG + chr7_2:2741496-2741515 Msa1044420:CDS 45.0%
TGATGCCTCCAAAGAGAACA+AGG - chr7_2:2741549-2741568 None:intergenic 45.0%
! TTGCATCGACGACAAGAGAA+TGG + chr7_2:2741705-2741724 Msa1044420:CDS 45.0%
CATGGAGGAATTGGACTTCA+CGG + chr7_2:2741733-2741752 Msa1044420:CDS 45.0%
CTTGCCAAGGTTACATGAGA+TGG + chr7_2:2741953-2741972 Msa1044420:CDS 45.0%
AGTTGGTCACACTGCTACAA+TGG + chr7_2:2742029-2742048 Msa1044420:CDS 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG + chr7_2:2742157-2742176 Msa1044420:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG + chr7_2:2742266-2742285 Msa1044420:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG + chr7_2:2742297-2742316 Msa1044420:CDS 45.0%
GAGCTTGTGCTTCAACTCTA+AGG + chr7_2:2742351-2742370 Msa1044420:CDS 45.0%
GCTTGTGTTTGGCAGAAGAC+AGG - chr7_2:2739843-2739862 None:intergenic 50.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG + chr7_2:2740349-2740368 Msa1044420:CDS 50.0%
! GACGACACCTTGATGACACA+TGG + chr7_2:2741416-2741435 Msa1044420:CDS 50.0%
! ACACCTTGATGACACATGGG+TGG + chr7_2:2741420-2741439 Msa1044420:CDS 50.0%
ATGCCACCCATGTGTCATCA+AGG - chr7_2:2741426-2741445 None:intergenic 50.0%
GACACATGGGTGGCATACAT+TGG + chr7_2:2741430-2741449 Msa1044420:CDS 50.0%
CGTGAAGTCCAATTCCTCCA+TGG - chr7_2:2741735-2741754 None:intergenic 50.0%
GACTTCACGGCCTTCGTTTA+GGG + chr7_2:2741746-2741765 Msa1044420:CDS 50.0%
ACTTCACGGCCTTCGTTTAG+GGG + chr7_2:2741747-2741766 Msa1044420:CDS 50.0%
TCCATGTGTCCCCTAAACGA+AGG - chr7_2:2741759-2741778 None:intergenic 50.0%
!! GGACACACGTTGACTTGCAT+TGG + chr7_2:2741856-2741875 Msa1044420:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG - chr7_2:2742027-2742046 None:intergenic 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG + chr7_2:2742163-2742182 Msa1044420:CDS 50.0%
TGACGAGGATGTGGAAACGA+TGG + chr7_2:2742172-2742191 Msa1044420:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG + chr7_2:2742270-2742289 Msa1044420:CDS 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG - chr7_2:2742306-2742325 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG + chr7_2:2742303-2742322 Msa1044420:CDS 50.0%
!! TTTGGTGGTGGCTGTGATGG+AGG + chr7_2:2740352-2740371 Msa1044420:CDS 55.0%
! GAGTGTTGCTCCACCACCTA+GGG + chr7_2:2741666-2741685 Msa1044420:CDS 55.0%
! AGTGTTGCTCCACCACCTAG+GGG + chr7_2:2741667-2741686 Msa1044420:CDS 55.0%
GGACTTCACGGCCTTCGTTT+AGG + chr7_2:2741745-2741764 Msa1044420:CDS 55.0%
GCCTTCGTTTAGGGGACACA+TGG + chr7_2:2741755-2741774 Msa1044420:CDS 55.0%
AACGTGTGTCCTGAACGTGG+CGG - chr7_2:2741847-2741866 None:intergenic 55.0%
GTCAACGTGTGTCCTGAACG+TGG - chr7_2:2741850-2741869 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG - chr7_2:2742241-2742260 None:intergenic 55.0%
! GTGGTGGCTGTGATGGAGGT+TGG + chr7_2:2740356-2740375 Msa1044420:intron 60.0%
!! GGAGTGTTGCTCCACCACCT+AGG + chr7_2:2741665-2741684 Msa1044420:CDS 60.0%
CAAGCAGCATGAGCTCCCCT+AGG - chr7_2:2741685-2741704 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG + chr7_2:2742234-2742253 Msa1044420:CDS 60.0%
GCATGAGCTCCCCTAGGTGG+TGG - chr7_2:2741679-2741698 None:intergenic 65.0%
GCAGCATGAGCTCCCCTAGG+TGG - chr7_2:2741682-2741701 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG - chr7_2:2741834-2741853 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG - chr7_2:2741844-2741863 None:intergenic 65.0%
! CCTGAACGTGGCGGAGGCGA+TGG - chr7_2:2741838-2741857 None:intergenic 70.0%
CCATCGCCTCCGCCACGTTC+AGG + chr7_2:2741835-2741854 Msa1044420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2739715 2742622 2739715 ID=Msa1044420;Name=Msa1044420
chr7_2 mRNA 2739715 2742622 2739715 ID=Msa1044420-mRNA-1;Parent=Msa1044420;Name=Msa1044420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=232|1|1|1|1|1|2|251|460
chr7_2 exon 2739715 2740373 2739715 ID=Msa1044420-mRNA-1:exon:682;Parent=Msa1044420-mRNA-1
chr7_2 exon 2741416 2742622 2741416 ID=Msa1044420-mRNA-1:exon:683;Parent=Msa1044420-mRNA-1
chr7_2 five_prime_UTR 2739715 2739946 2739715 ID=Msa1044420-mRNA-1:five_prime_utr;Parent=Msa1044420-mRNA-1
chr7_2 CDS 2739947 2740373 2739947 ID=Msa1044420-mRNA-1:cds;Parent=Msa1044420-mRNA-1
chr7_2 CDS 2741416 2742371 2741416 ID=Msa1044420-mRNA-1:cds;Parent=Msa1044420-mRNA-1
chr7_2 three_prime_UTR 2742372 2742622 2742372 ID=Msa1044420-mRNA-1:three_prime_utr;Parent=Msa1044420-mRNA-1
Gene Sequence

>Msa1044420

ATGGAAGAAACCACTAGTGTTAGTTATAATCAAAATTATAGTGGATCACCAATAACCAACATACCTCAAGATTACATCTTCACTATTATCCTTCTTCTCCCTATAGATGCAATTCTTTCTCTTTCCATGACATGCAAGAGATTCAAAGCTTTAACTTCGTCTGAAACACTGTGGAAATCCTTATGCAAGAGAGACTTGAGTTCAACATGTGTGGATTCACTAGTCAAGTCTTTTAATATTTCCAAGCACCATGTTCATCAGTTTTCATGGACGAAACTCTATAAGCAAATATATCAGATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGGACGACACCTTGATGACACATGGGTGGCATACATTGGTAGCGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTAGAAATGGGTGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTACACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGACGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTTGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGCCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACAGTAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>Msa1044420

MEETTSVSYNQNYSGSPITNIPQDYIFTIILLLPIDAILSLSMTCKRFKALTSSETLWKSLCKRDLSSTCVDSLVKSFNISKHHVHQFSWTKLYKQIYQMDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGGRHLDDTWVAYIGSDFQRILKWKTVHSGIPSGRFGHTCVEMGDFLVLFGGINDHGNRQNDTWIGKVTHNENKGITFSWKMIDVGSVAPPPRGAHAACCIDDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTVSSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL*