AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901360 MtrunA17_Chr6g0487951 100.000 121 0 0 1 121 1 121 5.98e-85 243
Msa0901360 MtrunA17_Chr8g0389431 97.521 121 3 0 1 121 1 121 6.56e-83 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901360 AT5G56710.1 84.211 114 18 0 8 121 6 119 3.60e-67 198
Msa0901360 AT4G26230.1 83.333 114 19 0 8 121 6 119 1.36e-66 197
Msa0901360 AT2G19740.1 81.667 120 21 1 2 121 1 119 4.79e-66 196
Msa0901360 AT5G56710.2 58.772 114 13 1 8 121 6 85 6.55e-38 123

Find 53 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAAAAGAATTATTCATTT+TGG 0.172220 6_1:-98079067 Msa0901360:three_prime_UTR
CTGATCTCCTTGATAGCTTT+TGG 0.199036 6_1:+98079490 None:intergenic
ATTCCTAAAGAAGAGTTAAA+AGG 0.277484 6_1:-98079286 Msa0901360:CDS
AAACTAGATATATGTTTCTC+TGG 0.305064 6_1:+98079200 None:intergenic
TAAAGAAGAGTTAAAAGGTT+TGG 0.305277 6_1:-98079281 Msa0901360:CDS
TCAAGCTGAACAAGGCTATC+TGG 0.323250 6_1:-98079420 Msa0901360:CDS
AAAGAAGAGTTAAAAGGTTT+GGG 0.335880 6_1:-98079280 Msa0901360:CDS
TCAACCCATTATAATTTGAT+TGG 0.339271 6_1:-98081991 None:intergenic
GGGTTTGGGTAATAAGGATT+TGG 0.355816 6_1:+98081966 None:intergenic
TTAATCTCAGAAGCTGAAAA+TGG 0.358745 6_1:-98081715 Msa0901360:exon
GGTTTGGGTAATAAGGATTT+GGG 0.365142 6_1:+98081967 None:intergenic
GAAGTGTACCAAGGAGGATC+AGG 0.398880 6_1:-98079384 Msa0901360:CDS
TTGGTACACTTCTGATTCCC+TGG 0.413987 6_1:+98079395 None:intergenic
CAACCCATTATAATTTGATT+GGG 0.421053 6_1:-98081990 None:intergenic
AAACCTTGCACACACTCTTA+AGG 0.432922 6_1:-98081882 Msa0901360:intron
GAAAAGAAGAGGTGGTTACA+AGG 0.449445 6_1:-98081671 Msa0901360:CDS
AAAATTGAAATTACCATCCA+TGG 0.462092 6_1:+98081619 None:intergenic
GAAGGCACCAAAAGCTATCA+AGG 0.472855 6_1:-98079497 Msa0901360:CDS
AACTAGATATATGTTTCTCT+GGG 0.478948 6_1:+98079201 None:intergenic
GAACAAGGCTATCTGGAGCC+AGG 0.480113 6_1:-98079413 Msa0901360:CDS
TGTGTTTCCATTAACATGGT+TGG 0.501296 6_1:-98079088 Msa0901360:three_prime_UTR
ATGGTGGAGAAGGGTGCAGC+AGG 0.507040 6_1:-98081696 Msa0901360:CDS
AAAAGAAGAGGTGGTTACAA+GGG 0.512524 6_1:-98081670 Msa0901360:CDS
GCAGAAGATTAGACAAAATG+AGG 0.517950 6_1:+98079044 None:intergenic
ACATAAAATAATTCACTTGG+TGG 0.522363 6_1:-98078976 Msa0901360:three_prime_UTR
ATGCGTACCCTGATCCTCCT+TGG 0.524657 6_1:+98079376 None:intergenic
GAGACGCTTGTGGAGATTGA+TGG 0.526766 6_1:+98081641 None:intergenic
TGCACTGTAAAACTCTATGT+TGG 0.532393 6_1:-98078943 Msa0901360:three_prime_UTR
AAGGGAGTATAACTCTTCCT+TGG 0.536523 6_1:+98079324 None:intergenic
GAAGCTGAAAATGGTGGAGA+AGG 0.536786 6_1:-98081706 Msa0901360:exon
TCTAACATCGTTAGTGCCCA+TGG 0.538776 6_1:+98079450 None:intergenic
ATCTTCATCATCAATGACCT+TGG 0.551546 6_1:+98079255 None:intergenic
AAACAGCACCTTCAAGAAGA+AGG 0.555549 6_1:-98079515 Msa0901360:intron
AATCTCCACAAGCGTCTCCA+TGG 0.563199 6_1:-98081636 Msa0901360:CDS
TCCACAAGCGTCTCCATGGA+TGG 0.567901 6_1:-98081632 Msa0901360:intron
TTACCTTAAGAGTGTGTGCA+AGG 0.572163 6_1:+98081879 None:intergenic
GGATTAGAAAGTGACACAAA+TGG 0.574733 6_1:-98078922 Msa0901360:three_prime_UTR
TGCAGCAGGTAGAAAAGAAG+AGG 0.581022 6_1:-98081682 Msa0901360:CDS
ACCATCCATGGAGACGCTTG+TGG 0.589153 6_1:+98081631 None:intergenic
GAATGACGATGAAGATGCCA+AGG 0.596982 6_1:-98079341 Msa0901360:CDS
GAATTTCAACGACAGTGACA+AGG 0.604839 6_1:+98079305 None:intergenic
AAGCTGAAAATGGTGGAGAA+GGG 0.607163 6_1:-98081705 Msa0901360:exon
ATCTCAGAAGCTGAAAATGG+TGG 0.613605 6_1:-98081712 Msa0901360:exon
AACAAGGCTATCTGGAGCCA+GGG 0.614836 6_1:-98079412 Msa0901360:CDS
AAAACATAAAATAATTCACT+TGG 0.617445 6_1:-98078979 Msa0901360:three_prime_UTR
AAGTGTACCAAGGAGGATCA+GGG 0.622533 6_1:-98079383 Msa0901360:CDS
AGTTGATGTCAAGCTGAACA+AGG 0.626602 6_1:-98079428 Msa0901360:CDS
GTTAAAAGGTTTGGGCACCA+AGG 0.626806 6_1:-98079272 Msa0901360:CDS
AGCAGGTAGAAAAGAAGAGG+TGG 0.632837 6_1:-98081679 Msa0901360:CDS
AATTTCAACGACAGTGACAA+GGG 0.644182 6_1:+98079306 None:intergenic
GGGTACGCATTGCTCGCAAG+AGG 0.652748 6_1:-98079363 Msa0901360:CDS
AGGGAATCAGAAGTGTACCA+AGG 0.682823 6_1:-98079393 Msa0901360:CDS
GAATCAGAAGTGTACCAAGG+AGG 0.739011 6_1:-98079390 Msa0901360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTTTGTTTTTTTTTT+AGG - chr6_1:98079128-98079147 Msa0901360:three_prime_UTR 10.0%
!! ATTATTCATGATTTGAAAAA+TGG - chr6_1:98081149-98081168 Msa0901360:intron 15.0%
!! TTATTCATGATTTGAAAAAT+GGG - chr6_1:98081150-98081169 Msa0901360:intron 15.0%
!! AAAACATAAAATAATTCACT+TGG - chr6_1:98081894-98081913 Msa0901360:five_prime_UTR 15.0%
!!! AAAGAAATTTTCGATTTTAG+AGG + chr6_1:98079038-98079057 None:intergenic 20.0%
!!! TTGTTTTTTTTTTAGGGTTT+AGG - chr6_1:98079135-98079154 Msa0901360:three_prime_UTR 20.0%
!! TTGAACTTCAATCAAAATAT+GGG + chr6_1:98079392-98079411 None:intergenic 20.0%
!! ATTGAACTTCAATCAAAATA+TGG + chr6_1:98079393-98079412 None:intergenic 20.0%
!!! ATTAAACTTAATTTTTCCCT+CGG + chr6_1:98079518-98079537 None:intergenic 20.0%
!!! TAAGCTATTTTTATAAGCTA+AGG - chr6_1:98079554-98079573 Msa0901360:intron 20.0%
!!! AAGCTATTTTTATAAGCTAA+GGG - chr6_1:98079555-98079574 Msa0901360:intron 20.0%
!! AATTTATAAGTGTTCACTAA+CGG - chr6_1:98079636-98079655 Msa0901360:intron 20.0%
!! TTATAATCTCTCAGAATTAT+GGG + chr6_1:98079744-98079763 None:intergenic 20.0%
!! TTTATAATCTCTCAGAATTA+TGG + chr6_1:98079745-98079764 None:intergenic 20.0%
!!! TAAGCTATTTCTATTTCAAA+AGG - chr6_1:98079806-98079825 Msa0901360:intron 20.0%
!! TTATGTAACACAACAATTAT+GGG + chr6_1:98079971-98079990 None:intergenic 20.0%
!!! GCTGTTTTAAAAAAATATCA+TGG + chr6_1:98080392-98080411 None:intergenic 20.0%
!! CATGAAATTAACAATTAAAG+TGG + chr6_1:98080466-98080485 None:intergenic 20.0%
!! TTAAACTGTTAATCAAAACA+GGG + chr6_1:98080505-98080524 None:intergenic 20.0%
!! ATTAAACTGTTAATCAAAAC+AGG + chr6_1:98080506-98080525 None:intergenic 20.0%
!! TTGATATTCATATTGTGAAT+TGG + chr6_1:98081180-98081199 None:intergenic 20.0%
!! TACTAATTTCTGTTTATGTT+TGG - chr6_1:98081316-98081335 Msa0901360:intron 20.0%
!!! GGTAAAAGAATTATTCATTT+TGG - chr6_1:98081806-98081825 Msa0901360:intron 20.0%
!!! AAAGAAACCCTAATTTTTTG+CGG + chr6_1:98078931-98078950 None:intergenic 25.0%
!!! TTCGATTTTAGAGGAAAATT+GGG + chr6_1:98079029-98079048 None:intergenic 25.0%
!!! TTTCGATTTTAGAGGAAAAT+TGG + chr6_1:98079030-98079049 None:intergenic 25.0%
! AAAATTGAAATTACCATCCA+TGG + chr6_1:98079257-98079276 None:intergenic 25.0%
! AAAAATAAGCCAATCTAAAC+AGG + chr6_1:98079581-98079600 None:intergenic 25.0%
! AACAGCTTATGCAAATAAAT+AGG + chr6_1:98079692-98079711 None:intergenic 25.0%
! TATGTAACACAACAATTATG+GGG + chr6_1:98079970-98079989 None:intergenic 25.0%
! CTTATGTAACACAACAATTA+TGG + chr6_1:98079972-98079991 None:intergenic 25.0%
!!! TCCTGTAATATTGTTTTAGT+TGG - chr6_1:98080205-98080224 Msa0901360:intron 25.0%
!! TTCAATTTTGTAGATCTACT+AGG - chr6_1:98080231-98080250 Msa0901360:intron 25.0%
!! TCAATTTTGTAGATCTACTA+GGG - chr6_1:98080232-98080251 Msa0901360:intron 25.0%
! TATGAAAATAAGCTGAATAC+AGG + chr6_1:98080363-98080382 None:intergenic 25.0%
! TTTCATGATCTAACTACATA+AGG - chr6_1:98080479-98080498 Msa0901360:intron 25.0%
!!! TGTTTTTTATAAGCTACTCT+TGG - chr6_1:98080597-98080616 Msa0901360:intron 25.0%
!! CTCAAATAAGCTATTTCAAA+AGG - chr6_1:98080717-98080736 Msa0901360:intron 25.0%
! ATGAATTCAAAAACAGCTTA+TGG + chr6_1:98080875-98080894 None:intergenic 25.0%
!! ATACATATTTAGGGTTTGTT+TGG + chr6_1:98080975-98080994 None:intergenic 25.0%
! ATGAACAGCATACATATTTA+GGG + chr6_1:98080984-98081003 None:intergenic 25.0%
! AATGAACAGCATACATATTT+AGG + chr6_1:98080985-98081004 None:intergenic 25.0%
! AAATATGTATGCTGTTCATT+TGG - chr6_1:98080985-98081004 Msa0901360:intron 25.0%
! GTGAGTAAATTAATAGTTTG+TGG - chr6_1:98081007-98081026 Msa0901360:intron 25.0%
!!! TAATATGAATTGAGTTGAGT+TGG - chr6_1:98081033-98081052 Msa0901360:intron 25.0%
! AATATGACTAAAAAACTGTG+AGG + chr6_1:98081094-98081113 None:intergenic 25.0%
! GCTATTTGTAATTGCATAAT+TGG - chr6_1:98081254-98081273 Msa0901360:intron 25.0%
! ATTCCTAAAGAAGAGTTAAA+AGG - chr6_1:98081587-98081606 Msa0901360:intron 25.0%
!!! AAACCTTTTAACTCTTCTTT+AGG + chr6_1:98081593-98081612 None:intergenic 25.0%
! TAAAGAAGAGTTAAAAGGTT+TGG - chr6_1:98081592-98081611 Msa0901360:intron 25.0%
! AAAGAAGAGTTAAAAGGTTT+GGG - chr6_1:98081593-98081612 Msa0901360:intron 25.0%
! AACTAGATATATGTTTCTCT+GGG + chr6_1:98081675-98081694 None:intergenic 25.0%
! AAACTAGATATATGTTTCTC+TGG + chr6_1:98081676-98081695 None:intergenic 25.0%
!! TAGTAAATTTTGTTGAGACT+TGG - chr6_1:98081737-98081756 Msa0901360:intron 25.0%
!! AGTAAATTTTGTTGAGACTT+GGG - chr6_1:98081738-98081757 Msa0901360:intron 25.0%
!! TTTTTGTGTTTCCATTAACA+TGG - chr6_1:98081781-98081800 Msa0901360:intron 25.0%
! ACATAAAATAATTCACTTGG+TGG - chr6_1:98081897-98081916 Msa0901360:five_prime_UTR 25.0%
!!! AAGAAACCCTAATTTTTTGC+GGG + chr6_1:98078930-98078949 None:intergenic 30.0%
TTAATCTCAGAAGCTGAAAA+TGG - chr6_1:98079158-98079177 Msa0901360:three_prime_UTR 30.0%
CCAAGTTATTTATCCAAACA+GGG + chr6_1:98079430-98079449 None:intergenic 30.0%
ACCAAGTTATTTATCCAAAC+AGG + chr6_1:98079431-98079450 None:intergenic 30.0%
GCTTATGAATGCTAATAAGT+AGG - chr6_1:98079603-98079622 Msa0901360:intron 30.0%
AAGCTCAAATCTAATCCAAA+TGG - chr6_1:98079718-98079737 Msa0901360:intron 30.0%
! CTGTGTTTGTTAGATAATTC+TGG - chr6_1:98079864-98079883 Msa0901360:intron 30.0%
ATGTAACACAACAATTATGG+GGG + chr6_1:98079969-98079988 None:intergenic 30.0%
!! CGTTTCAAATTTGTTGATCT+AGG - chr6_1:98079992-98080011 Msa0901360:intron 30.0%
TAGGATCTGTTTGGATAAAT+AGG - chr6_1:98080011-98080030 Msa0901360:intron 30.0%
! TCAGTTTTCTGTGTTTACAT+TGG - chr6_1:98080151-98080170 Msa0901360:intron 30.0%
GCCAACTAAAACAATATTAC+AGG + chr6_1:98080209-98080228 None:intergenic 30.0%
TGTCATCAACTGTTTCAATA+AGG + chr6_1:98080331-98080350 None:intergenic 30.0%
ATTCTCTAATGGCATAACAT+TGG + chr6_1:98080697-98080716 None:intergenic 30.0%
! GCTTATTTGAGATTCTCTAA+TGG + chr6_1:98080708-98080727 None:intergenic 30.0%
TTTCATTGTTCATAAGTTGC+TGG + chr6_1:98080916-98080935 None:intergenic 30.0%
! TATTTAGGGTTTGTTTGGAT+AGG + chr6_1:98080970-98080989 None:intergenic 30.0%
! AAAATTTGCTCAAAAAGCCA+TGG - chr6_1:98081406-98081425 Msa0901360:intron 30.0%
! AAATTTGCTCAAAAAGCCAT+GGG - chr6_1:98081407-98081426 Msa0901360:intron 30.0%
! GTAAATTTTGTTGAGACTTG+GGG - chr6_1:98081739-98081758 Msa0901360:intron 30.0%
GTTAATGGAAACACAAAAAC+AGG + chr6_1:98081780-98081799 None:intergenic 30.0%
! TCTTTTACCAACCATGTTAA+TGG + chr6_1:98081795-98081814 None:intergenic 30.0%
GGTTTGGGTAATAAGGATTT+GGG + chr6_1:98078909-98078928 None:intergenic 35.0%
AGTGAAGCAAAAAATGAGAG+AGG + chr6_1:98078966-98078985 None:intergenic 35.0%
TTAGAGGAAAATTGGGAACT+AGG + chr6_1:98079022-98079041 None:intergenic 35.0%
AAAAGAAGAGGTGGTTACAA+GGG - chr6_1:98079203-98079222 Msa0901360:three_prime_UTR 35.0%
CCCTGTTTGGATAAATAACT+TGG - chr6_1:98079427-98079446 Msa0901360:CDS 35.0%
!!! TATAAGCTACTTTTATGCCG+AGG - chr6_1:98079498-98079517 Msa0901360:CDS 35.0%
!!! ATAAGCTACTTTTATGCCGA+GGG - chr6_1:98079499-98079518 Msa0901360:CDS 35.0%
! TTGTTGATCTAGGATCTGTT+TGG - chr6_1:98080002-98080021 Msa0901360:intron 35.0%
TTGATCTCAAAGCAACGAAA+CGG + chr6_1:98081211-98081230 None:intergenic 35.0%
AATTTCAACGACAGTGACAA+GGG + chr6_1:98081570-98081589 None:intergenic 35.0%
ATCTTCATCATCAATGACCT+TGG + chr6_1:98081621-98081640 None:intergenic 35.0%
TGTGTTTCCATTAACATGGT+TGG - chr6_1:98081785-98081804 Msa0901360:intron 35.0%
GCAGAAGATTAGACAAAATG+AGG + chr6_1:98081832-98081851 None:intergenic 35.0%
! CATAGAGTTTTACAGTGCAT+TGG + chr6_1:98081929-98081948 None:intergenic 35.0%
TGCACTGTAAAACTCTATGT+TGG - chr6_1:98081930-98081949 Msa0901360:five_prime_UTR 35.0%
GGATTAGAAAGTGACACAAA+TGG - chr6_1:98081951-98081970 Msa0901360:five_prime_UTR 35.0%
GGGTTTGGGTAATAAGGATT+TGG + chr6_1:98078910-98078929 None:intergenic 40.0%
! TTTTGCGGGTTTGGGTAATA+AGG + chr6_1:98078916-98078935 None:intergenic 40.0%
ACCCAAACCCGCAAAAAATT+AGG - chr6_1:98078920-98078939 Msa0901360:three_prime_UTR 40.0%
!!! CCCTAATTTTTTGCGGGTTT+GGG + chr6_1:98078924-98078943 None:intergenic 40.0%
CCCAAACCCGCAAAAAATTA+GGG - chr6_1:98078921-98078940 Msa0901360:three_prime_UTR 40.0%
!!! ACCCTAATTTTTTGCGGGTT+TGG + chr6_1:98078925-98078944 None:intergenic 40.0%
!! AAGAGTGTGTGCAAGGTTTT+CGG + chr6_1:98078990-98079009 None:intergenic 40.0%
AAACCTTGCACACACTCTTA+AGG - chr6_1:98078991-98079010 Msa0901360:three_prime_UTR 40.0%
! TTACCTTAAGAGTGTGTGCA+AGG + chr6_1:98078997-98079016 None:intergenic 40.0%
ATCTCAGAAGCTGAAAATGG+TGG - chr6_1:98079161-98079180 Msa0901360:three_prime_UTR 40.0%
! AAGCTGAAAATGGTGGAGAA+GGG - chr6_1:98079168-98079187 Msa0901360:three_prime_UTR 40.0%
GAAAAGAAGAGGTGGTTACA+AGG - chr6_1:98079202-98079221 Msa0901360:three_prime_UTR 40.0%
TTGTTGATCTAGACCCTGTT+TGG - chr6_1:98079414-98079433 Msa0901360:CDS 40.0%
TCTCAGAATTATGGGCCATT+TGG + chr6_1:98079736-98079755 None:intergenic 40.0%
AACACAACAATTATGGGGGA+AGG + chr6_1:98079965-98079984 None:intergenic 40.0%
! TGTAGATCTACTAGGGTGTT+AGG - chr6_1:98080239-98080258 Msa0901360:intron 40.0%
! GTAGATCTACTAGGGTGTTA+GGG - chr6_1:98080240-98080259 Msa0901360:intron 40.0%
! TTCATAAGTTGCTGGCTGTT+TGG + chr6_1:98080908-98080927 None:intergenic 40.0%
AAACAGCACCTTCAAGAAGA+AGG - chr6_1:98081358-98081377 Msa0901360:intron 40.0%
!!! TTTTGGTGCCTTCTTCTTGA+AGG + chr6_1:98081369-98081388 None:intergenic 40.0%
!! CTGATCTCCTTGATAGCTTT+TGG + chr6_1:98081386-98081405 None:intergenic 40.0%
! AGTTGATGTCAAGCTGAACA+AGG - chr6_1:98081445-98081464 Msa0901360:intron 40.0%
! AAGGGAGTATAACTCTTCCT+TGG + chr6_1:98081552-98081571 None:intergenic 40.0%
GAATTTCAACGACAGTGACA+AGG + chr6_1:98081571-98081590 None:intergenic 40.0%
! AATTTTGTTGAGACTTGGGG+TGG - chr6_1:98081742-98081761 Msa0901360:intron 40.0%
! GAAGCTGAAAATGGTGGAGA+AGG - chr6_1:98079167-98079186 Msa0901360:three_prime_UTR 45.0%
TGCAGCAGGTAGAAAAGAAG+AGG - chr6_1:98079191-98079210 Msa0901360:three_prime_UTR 45.0%
AGCAGGTAGAAAAGAAGAGG+TGG - chr6_1:98079194-98079213 Msa0901360:three_prime_UTR 45.0%
AGCTAAGGGCCTGTTTAGAT+TGG - chr6_1:98079569-98079588 Msa0901360:intron 45.0%
! ATCTACTAGGGTGTTAGGGT+CGG - chr6_1:98080244-98080263 Msa0901360:intron 45.0%
TAAGCTCCTGTTCGACTGTT+TGG - chr6_1:98080301-98080320 Msa0901360:intron 45.0%
AGCTACTCTTGGAGAGCTTA+TGG - chr6_1:98080608-98080627 Msa0901360:intron 45.0%
! TCGCACTGTTTTGTGTGTTG+TGG - chr6_1:98081068-98081087 Msa0901360:intron 45.0%
!! GAAGGCACCAAAAGCTATCA+AGG - chr6_1:98081376-98081395 Msa0901360:intron 45.0%
TCTAACATCGTTAGTGCCCA+TGG + chr6_1:98081426-98081445 None:intergenic 45.0%
TCAAGCTGAACAAGGCTATC+TGG - chr6_1:98081453-98081472 Msa0901360:intron 45.0%
TTGGTACACTTCTGATTCCC+TGG + chr6_1:98081481-98081500 None:intergenic 45.0%
! AGGGAATCAGAAGTGTACCA+AGG - chr6_1:98081480-98081499 Msa0901360:intron 45.0%
! GAATCAGAAGTGTACCAAGG+AGG - chr6_1:98081483-98081502 Msa0901360:intron 45.0%
AAGTGTACCAAGGAGGATCA+GGG - chr6_1:98081490-98081509 Msa0901360:intron 45.0%
GAATGACGATGAAGATGCCA+AGG - chr6_1:98081532-98081551 Msa0901360:intron 45.0%
GTTAAAAGGTTTGGGCACCA+AGG - chr6_1:98081601-98081620 Msa0901360:intron 45.0%
!!! AATTTTTTGTTTTTTTTTTA+GGG - chr6_1:98079129-98079148 Msa0901360:three_prime_UTR 5.0%
GAGACGCTTGTGGAGATTGA+TGG + chr6_1:98079235-98079254 None:intergenic 50.0%
AATCTCCACAAGCGTCTCCA+TGG - chr6_1:98079237-98079256 Msa0901360:exon 50.0%
GGTCTTCCAAACAGTCGAAC+AGG + chr6_1:98080310-98080329 None:intergenic 50.0%
! AACAAGGCTATCTGGAGCCA+GGG - chr6_1:98081461-98081480 Msa0901360:intron 50.0%
GAAGTGTACCAAGGAGGATC+AGG - chr6_1:98081489-98081508 Msa0901360:intron 50.0%
TCCACAAGCGTCTCCATGGA+TGG - chr6_1:98079241-98079260 Msa0901360:exon 55.0%
ACCATCCATGGAGACGCTTG+TGG + chr6_1:98079245-98079264 None:intergenic 55.0%
! CTAGGGTGTTAGGGTCGGTT+TGG - chr6_1:98080249-98080268 Msa0901360:intron 55.0%
! GAACAAGGCTATCTGGAGCC+AGG - chr6_1:98081460-98081479 Msa0901360:intron 55.0%
ATGCGTACCCTGATCCTCCT+TGG + chr6_1:98081500-98081519 None:intergenic 55.0%
! ATGGTGGAGAAGGGTGCAGC+AGG - chr6_1:98079177-98079196 Msa0901360:three_prime_UTR 60.0%
GGGTACGCATTGCTCGCAAG+AGG - chr6_1:98081510-98081529 Msa0901360:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 98078895 98082000 98078895 ID=Msa0901360;Name=Msa0901360
chr6_1 mRNA 98078895 98082000 98078895 ID=Msa0901360-mRNA-1;Parent=Msa0901360;Name=Msa0901360-mRNA-1;_AED=0.34;_eAED=0.34;_QI=145|1|1|1|0.5|0.33|3|357|121
chr6_1 exon 98078895 98079531 98078895 ID=Msa0901360-mRNA-1:exon:17213;Parent=Msa0901360-mRNA-1
chr6_1 exon 98081633 98081745 98081633 ID=Msa0901360-mRNA-1:exon:17212;Parent=Msa0901360-mRNA-1
chr6_1 exon 98081883 98082000 98081883 ID=Msa0901360-mRNA-1:exon:17211;Parent=Msa0901360-mRNA-1
chr6_1 five_prime_UTR 98081883 98082000 98081883 ID=Msa0901360-mRNA-1:five_prime_utr;Parent=Msa0901360-mRNA-1
chr6_1 five_prime_UTR 98081719 98081745 98081719 ID=Msa0901360-mRNA-1:five_prime_utr;Parent=Msa0901360-mRNA-1
chr6_1 CDS 98081633 98081718 98081633 ID=Msa0901360-mRNA-1:cds;Parent=Msa0901360-mRNA-1
chr6_1 CDS 98079252 98079531 98079252 ID=Msa0901360-mRNA-1:cds;Parent=Msa0901360-mRNA-1
chr6_1 three_prime_UTR 98078895 98079251 98078895 ID=Msa0901360-mRNA-1:three_prime_utr;Parent=Msa0901360-mRNA-1
Gene Sequence

>Msa0901360

ATGGTGGAGAAGGGTGCAGCAGGTAGAAAAGAAGAGGTGGTTACAAGGGAGTATACCATCAATCTCCACAAGCGTCTCCATGGATGCACCTTCAAGAAGAAGGCACCAAAAGCTATCAAGGAGATCAGAAAATTTGCTCAAAAAGCCATGGGCACTAACGATGTTAGAGTTGATGTCAAGCTGAACAAGGCTATCTGGAGCCAGGGAATCAGAAGTGTACCAAGGAGGATCAGGGTACGCATTGCTCGCAAGAGGAATGACGATGAAGATGCCAAGGAAGAGTTATACTCCCTTGTCACTGTCGTTGAAATTCCTAAAGAAGAGTTAAAAGGTTTGGGCACCAAGGTCATTGATGATGAAGATTGA
Protein sequence

>Msa0901360

MVEKGAAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKAIWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED*