Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1256840 | XP_034932641.1 | 100.000 | 92 | 0 | 0 | 1 | 92 | 48 | 139 | 2.05e-59 | 188 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1256840 | sp|Q9ZRS8|RL37A_PSEMZ | 97.802 | 91 | 2 | 0 | 1 | 91 | 1 | 91 | 6.61e-60 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002750 | Msa1256840 | 0.809836 | 1.554065e-50 | -8.615850e-47 |
Msa0002790 | Msa1256840 | 0.806183 | 9.307275e-50 | -8.615850e-47 |
Msa0032780 | Msa1256840 | 0.853923 | 1.733071e-61 | -8.615850e-47 |
Msa0049690 | Msa1256840 | 0.838768 | 2.363172e-57 | -8.615850e-47 |
Msa0085780 | Msa1256840 | 0.829928 | 3.911788e-55 | -8.615850e-47 |
Msa0090580 | Msa1256840 | 0.804119 | 2.516980e-49 | -8.615850e-47 |
Msa0100420 | Msa1256840 | 0.822820 | 1.930951e-53 | -8.615850e-47 |
Msa0114570 | Msa1256840 | 0.814019 | 1.906965e-51 | -8.615850e-47 |
Msa0604960 | Msa1256840 | 0.805830 | 1.104754e-49 | -8.615850e-47 |
Msa0625570 | Msa1256840 | 0.832567 | 8.784242e-56 | -8.615850e-47 |
Msa0698780 | Msa1256840 | 0.811078 | 8.381631e-51 | -8.615850e-47 |
Msa0705800 | Msa1256840 | 0.845286 | 4.465278e-59 | -8.615850e-47 |
Msa0712610 | Msa1256840 | 0.884787 | 1.422183e-71 | -8.615850e-47 |
Msa0729200 | Msa1256840 | 0.818080 | 2.361908e-52 | -8.615850e-47 |
Msa0752910 | Msa1256840 | 0.825078 | 5.703287e-54 | -8.615850e-47 |
Msa0766080 | Msa1256840 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
Msa0769590 | Msa1256840 | 0.810401 | 1.173843e-50 | -8.615850e-47 |
Msa0781080 | Msa1256840 | 0.862393 | 5.231812e-64 | -8.615850e-47 |
Msa0792420 | Msa1256840 | 0.872841 | 2.331479e-67 | -8.615850e-47 |
Msa0822580 | Msa1256840 | 0.828738 | 7.609069e-55 | -8.615850e-47 |
Msa0130420 | Msa1256840 | 0.814013 | 1.911851e-51 | -8.615850e-47 |
Msa0138890 | Msa1256840 | 0.821247 | 4.469854e-53 | -8.615850e-47 |
Msa0140850 | Msa1256840 | 0.804453 | 2.144985e-49 | -8.615850e-47 |
Msa0172900 | Msa1256840 | 0.801166 | 1.023686e-48 | -8.615850e-47 |
Msa0172930 | Msa1256840 | 0.815773 | 7.785605e-52 | -8.615850e-47 |
Msa0194940 | Msa1256840 | 0.824045 | 9.983666e-54 | -8.615850e-47 |
Msa0210330 | Msa1256840 | 0.861196 | 1.216259e-63 | -8.615850e-47 |
Msa0210360 | Msa1256840 | 0.834370 | 3.117237e-56 | -8.615850e-47 |
Msa0219120 | Msa1256840 | 0.819545 | 1.097927e-52 | -8.615850e-47 |
Msa0224560 | Msa1256840 | 0.803421 | 3.513634e-49 | -8.615850e-47 |
Msa0229150 | Msa1256840 | 0.832059 | 1.173168e-55 | -8.615850e-47 |
Msa0230490 | Msa1256840 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
Msa1240270 | Msa1256840 | 0.800399 | 1.467987e-48 | -8.615850e-47 |
Msa1256840 | Msa1273340 | 0.812933 | 3.303943e-51 | -8.615850e-47 |
Msa1256840 | Msa1295150 | 0.814429 | 1.547621e-51 | -8.615850e-47 |
Msa1256840 | Msa1311400 | 0.893993 | 3.744694e-75 | -8.615850e-47 |
Msa1256840 | Msa1321790 | 0.867334 | 1.477670e-65 | -8.615850e-47 |
Msa1256840 | Msa1332250 | 0.867528 | 1.280858e-65 | -8.615850e-47 |
Msa1256840 | Msa1338190 | 0.870489 | 1.404299e-66 | -8.615850e-47 |
Msa1256840 | Msa1343260 | 0.825886 | 3.669667e-54 | -8.615850e-47 |
Msa1256840 | Msa1356790 | 0.891673 | 3.205041e-74 | -8.615850e-47 |
Msa1256840 | Msa1362210 | 0.827075 | 1.910918e-54 | -8.615850e-47 |
Msa1256840 | Msa1362790 | 0.848373 | 6.389353e-60 | -8.615850e-47 |
Msa1256840 | Msa1368920 | 0.856135 | 3.948164e-62 | -8.615850e-47 |
Msa1256840 | Msa1369190 | 0.806714 | 7.194536e-50 | -8.615850e-47 |
Msa1256840 | Msa1374240 | 0.801926 | 7.148556e-49 | -8.615850e-47 |
Msa1256840 | Msa1392590 | 0.845116 | 4.963859e-59 | -8.615850e-47 |
Msa1256840 | Msa1397100 | 0.828493 | 8.717177e-55 | -8.615850e-47 |
Msa1256840 | Msa1397660 | 0.815842 | 7.513568e-52 | -8.615850e-47 |
Msa1256840 | Msa1403910 | 0.811162 | 8.035929e-51 | -8.615850e-47 |
Msa1256840 | Msa1418770 | 0.853594 | 2.154746e-61 | -8.615850e-47 |
Msa1256840 | Msa1426120 | 0.858120 | 1.024721e-62 | -8.615850e-47 |
Msa1256840 | Msa1426490 | 0.805534 | 1.274689e-49 | -8.615850e-47 |
Msa1256840 | Msa1437280 | 0.841989 | 3.400956e-58 | -8.615850e-47 |
Msa1256840 | Msa1456050 | 0.850531 | 1.598491e-60 | -8.615850e-47 |
Msa0376830 | Msa1256840 | 0.846597 | 1.965577e-59 | -8.615850e-47 |
Msa0425640 | Msa1256840 | 0.821573 | 3.758364e-53 | -8.615850e-47 |
Msa0436720 | Msa1256840 | 0.817257 | 3.621042e-52 | -8.615850e-47 |
Msa0471880 | Msa1256840 | 0.826939 | 2.059551e-54 | -8.615850e-47 |
Msa0481520 | Msa1256840 | 0.800124 | 1.669543e-48 | -8.615850e-47 |
Msa0481850 | Msa1256840 | 0.880514 | 5.155743e-70 | -8.615850e-47 |
Msa1010310 | Msa1256840 | 0.835762 | 1.389505e-56 | -8.615850e-47 |
Msa1037290 | Msa1256840 | 0.856167 | 3.861915e-62 | -8.615850e-47 |
Msa1078870 | Msa1256840 | 0.857127 | 2.016540e-62 | -8.615850e-47 |
Msa1078980 | Msa1256840 | 0.818440 | 1.957618e-52 | -8.615850e-47 |
Msa1080350 | Msa1256840 | 0.892532 | 1.455797e-74 | -8.615850e-47 |
Msa1082170 | Msa1256840 | 0.815743 | 7.907341e-52 | -8.615850e-47 |
Msa1088490 | Msa1256840 | 0.809396 | 1.931554e-50 | -8.615850e-47 |
Msa0250820 | Msa1256840 | 0.804264 | 2.347903e-49 | -8.615850e-47 |
Msa0257450 | Msa1256840 | 0.861197 | 1.215417e-63 | -8.615850e-47 |
Msa0258850 | Msa1256840 | 0.820895 | 5.385557e-53 | -8.615850e-47 |
Msa0296720 | Msa1256840 | 0.824339 | 8.518393e-54 | -8.615850e-47 |
Msa0297830 | Msa1256840 | 0.817389 | 3.382758e-52 | -8.615850e-47 |
Msa0298200 | Msa1256840 | 0.814699 | 1.349016e-51 | -8.615850e-47 |
Msa0335840 | Msa1256840 | 0.830274 | 3.220075e-55 | -8.615850e-47 |
Msa0336010 | Msa1256840 | 0.812542 | 4.022463e-51 | -8.615850e-47 |
Msa0348830 | Msa1256840 | 0.816978 | 4.184049e-52 | -8.615850e-47 |
Msa1125860 | Msa1256840 | 0.887073 | 1.964555e-72 | -8.615850e-47 |
Msa1126060 | Msa1256840 | 0.881446 | 2.384226e-70 | -8.615850e-47 |
Msa1126520 | Msa1256840 | 0.858689 | 6.933538e-63 | -8.615850e-47 |
Msa1147670 | Msa1256840 | 0.817593 | 3.043019e-52 | -8.615850e-47 |
Msa1164150 | Msa1256840 | 0.851640 | 7.781448e-61 | -8.615850e-47 |
Msa1165640 | Msa1256840 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
Msa1169180 | Msa1256840 | 0.811260 | 7.651187e-51 | -8.615850e-47 |
Msa1208330 | Msa1256840 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
Msa1215820 | Msa1256840 | 0.812946 | 3.282588e-51 | -8.615850e-47 |
Msa1218170 | Msa1256840 | 0.817282 | 3.575741e-52 | -8.615850e-47 |
Msa0483110 | Msa1256840 | 0.830800 | 2.395265e-55 | -8.615850e-47 |
Msa0521050 | Msa1256840 | 0.804558 | 2.039494e-49 | -8.615850e-47 |
Msa0546030 | Msa1256840 | 0.805137 | 1.543581e-49 | -8.615850e-47 |
Msa0550420 | Msa1256840 | 0.807021 | 6.194931e-50 | -8.615850e-47 |
Msa0573350 | Msa1256840 | 0.820352 | 7.176535e-53 | -8.615850e-47 |
Msa0584030 | Msa1256840 | 0.826211 | 3.071782e-54 | -8.615850e-47 |
Msa0590940 | Msa1256840 | 0.827566 | 1.457245e-54 | -8.615850e-47 |
Msa0861320 | Msa1256840 | 0.824012 | 1.016188e-53 | -8.615850e-47 |
Msa0888810 | Msa1256840 | 0.840805 | 6.970659e-58 | -8.615850e-47 |
Msa0901360 | Msa1256840 | 0.801304 | 9.589939e-49 | -8.615850e-47 |
Msa0915540 | Msa1256840 | 0.837536 | 4.904753e-57 | -8.615850e-47 |
Msa0945480 | Msa1256840 | 0.845934 | 2.978294e-59 | -8.615850e-47 |
Msa0966670 | Msa1256840 | 0.809992 | 1.438323e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1256840 | MtrunA17_Chr8g0336121 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
Msa1256840 | MtrunA17_Chr4g0055341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
Msa1256840 | MtrunA17_Chr4g0057431 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
Msa1256840 | MtrunA17_Chr8g0336341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1256840 | AT3G10950.1 | 93.478 | 92 | 6 | 0 | 1 | 92 | 1 | 92 | 4.50e-59 | 176 |
Msa1256840 | AT3G60245.1 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 8.73e-58 | 172 |
Find 32 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCGTATTCTATAACTTTA+AGG | 0.098185 | 8_2:+57089801 | None:intergenic |
ATGGTAGCATTATAATATTT+TGG | 0.275986 | 8_2:-57089824 | Msa1256840:three_prime_UTR |
TAGTAGAACAATCATGCTTC+TGG | 0.312516 | 8_2:-57089701 | Msa1256840:intron |
AGAGAAAGGCTGTAGGAATA+TGG | 0.316747 | 8_2:-57090331 | Msa1256840:CDS |
GAGAAAGGCTGTAGGAATAT+GGG | 0.416937 | 8_2:-57090330 | Msa1256840:CDS |
GCTGGTATCGTTGGCAAATA+CGG | 0.433650 | 8_2:-57091226 | Msa1256840:intron |
ATGATATTAGGTACCCGTTA+TGG | 0.441488 | 8_2:-57090554 | Msa1256840:intron |
GTACAACCAATGTAAATCTC+TGG | 0.443007 | 8_2:+57090056 | None:intergenic |
CTGCAAGTGCCGTGACTGTT+CGG | 0.445396 | 8_2:-57090171 | Msa1256840:CDS |
TGACTGTTCGGAGCACCATC+AGG | 0.472923 | 8_2:-57090159 | Msa1256840:CDS |
ACGCAAACTAGCACCATAAC+GGG | 0.476774 | 8_2:+57090541 | None:intergenic |
TTGTTCCCTCAACCTCCTGA+TGG | 0.500191 | 8_2:+57090144 | None:intergenic |
GGAGCACCATCAGGAGGTTG+AGG | 0.503709 | 8_2:-57090150 | Msa1256840:CDS |
AGGTGTTTGGGGACAATGAA+AGG | 0.523148 | 8_2:+57089940 | None:intergenic |
TACGCAAACTAGCACCATAA+CGG | 0.535734 | 8_2:+57090540 | None:intergenic |
AGAAAGGCTGTAGGAATATG+GGG | 0.537082 | 8_2:-57090329 | Msa1256840:CDS |
ACTAAGAGAACTAAGAAGGC+TGG | 0.546098 | 8_2:-57091244 | Msa1256840:CDS |
GAGCACCATCAGGAGGTTGA+GGG | 0.548544 | 8_2:-57090149 | Msa1256840:CDS |
ACTAAGAAGGCTGGTATCGT+TGG | 0.554051 | 8_2:-57091235 | Msa1256840:CDS |
TTGTGATTATGTCGAGGCCA+TGG | 0.565752 | 8_2:-57089843 | Msa1256840:three_prime_UTR |
GCAGACTAAGAGAACTAAGA+AGG | 0.566891 | 8_2:-57091248 | Msa1256840:intron |
GATTGCGGTAAAGTGAAAGC+AGG | 0.587249 | 8_2:-57090299 | Msa1256840:CDS |
TGTAGGAATATGGGGATGCA+AGG | 0.599232 | 8_2:-57090321 | Msa1256840:CDS |
TAAAGTTATAGAATACGCAA+AGG | 0.599704 | 8_2:-57089798 | Msa1256840:three_prime_UTR |
AAAATATTATAATGCTACCA+TGG | 0.603906 | 8_2:+57089826 | None:intergenic |
GATGGTGCTCCGAACAGTCA+CGG | 0.619064 | 8_2:+57090162 | None:intergenic |
GCAGTATGCTGTGAAGAGAA+AGG | 0.632531 | 8_2:-57090345 | Msa1256840:intron |
TGCGGTAAAGTGAAAGCAGG+CGG | 0.647382 | 8_2:-57090296 | Msa1256840:CDS |
ATATGGGGATGCAAGGATTG+CGG | 0.650089 | 8_2:-57090314 | Msa1256840:CDS |
GCTGTGAAGAGAAAGGCTGT+AGG | 0.663437 | 8_2:-57090338 | Msa1256840:CDS |
ACAATGAAAGGAAACAACAA+AGG | 0.672606 | 8_2:+57089952 | None:intergenic |
CTGTTCGGAGCACCATCAGG+AGG | 0.673364 | 8_2:-57090156 | Msa1256840:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATATGTATGTAAAAA+AGG | - | chr8_2:57089904-57089923 | Msa1256840:three_prime_UTR | 10.0% |
!!! | TTTACTAAATGTTTTAAATA+TGG | - | chr8_2:57090399-57090418 | Msa1256840:intron | 10.0% |
!!! | AATAAATAATATTTTATGCA+AGG | - | chr8_2:57090651-57090670 | Msa1256840:intron | 10.0% |
!!! | ATTATATTTTATGTAAAACA+AGG | + | chr8_2:57090882-57090901 | None:intergenic | 10.0% |
!! | AAAAAATATGTATGTAAAAA+AGG | - | chr8_2:57089904-57089923 | Msa1256840:three_prime_UTR | 10.0% |
!!! | TTTACTAAATGTTTTAAATA+TGG | - | chr8_2:57090399-57090418 | Msa1256840:intron | 10.0% |
!!! | AATAAATAATATTTTATGCA+AGG | - | chr8_2:57090651-57090670 | Msa1256840:intron | 10.0% |
!!! | ATTATATTTTATGTAAAACA+AGG | + | chr8_2:57090882-57090901 | None:intergenic | 10.0% |
!! | TTAATATTAAAAGCAGAAAT+AGG | - | chr8_2:57089796-57089815 | Msa1256840:three_prime_UTR | 15.0% |
!! | TATACATAGATATATGTATA+TGG | - | chr8_2:57090536-57090555 | Msa1256840:CDS | 15.0% |
!!! | TTTTATTTTTCAAATCTGAA+AGG | - | chr8_2:57091292-57091311 | Msa1256840:intron | 15.0% |
!! | TTAATATTAAAAGCAGAAAT+AGG | - | chr8_2:57089796-57089815 | Msa1256840:three_prime_UTR | 15.0% |
!! | TATACATAGATATATGTATA+TGG | - | chr8_2:57090536-57090555 | Msa1256840:CDS | 15.0% |
!!! | TTTTATTTTTCAAATCTGAA+AGG | - | chr8_2:57091292-57091311 | Msa1256840:intron | 15.0% |
!! | TAAACAGATTAAATCTTCTT+TGG | - | chr8_2:57089656-57089675 | Msa1256840:three_prime_UTR | 20.0% |
!!! | AAATGAAATACAAGCTATTT+TGG | + | chr8_2:57089695-57089714 | None:intergenic | 20.0% |
!!! | AGTTAAAAATACCTGTATTT+TGG | + | chr8_2:57089749-57089768 | None:intergenic | 20.0% |
!! | ACAAAGAATTTGTAAGATTT+CGG | + | chr8_2:57090328-57090347 | None:intergenic | 20.0% |
!!! | AAATATGGTTTTGTTTATGA+TGG | - | chr8_2:57090414-57090433 | Msa1256840:intron | 20.0% |
!! | ACAAATACAATTCATGAATT+GGG | + | chr8_2:57090848-57090867 | None:intergenic | 20.0% |
!! | TACAAATACAATTCATGAAT+TGG | + | chr8_2:57090849-57090868 | None:intergenic | 20.0% |
!! | TTTATGAGAAGTTAATTCAT+TGG | - | chr8_2:57090937-57090956 | Msa1256840:intron | 20.0% |
!!! | TGGTTTTATTGTATGATATT+AGG | - | chr8_2:57090957-57090976 | Msa1256840:intron | 20.0% |
!!! | AAATTTTTCTGTGAATTTTG+TGG | - | chr8_2:57091041-57091060 | Msa1256840:intron | 20.0% |
!!! | ATCTAAGTATTTAGTTTAGT+TGG | - | chr8_2:57091105-57091124 | Msa1256840:intron | 20.0% |
!! | GAAAAATAAAAGATTGAGAA+AGG | + | chr8_2:57091283-57091302 | None:intergenic | 20.0% |
!! | AAAATATTATAATGCTACCA+TGG | + | chr8_2:57091700-57091719 | None:intergenic | 20.0% |
!!! | ATGGTAGCATTATAATATTT+TGG | - | chr8_2:57091699-57091718 | Msa1256840:intron | 20.0% |
!!! | AGGTTTTACATTTATTTTGA+AGG | - | chr8_2:57091745-57091764 | Msa1256840:intron | 20.0% |
!! | TAAACAGATTAAATCTTCTT+TGG | - | chr8_2:57089656-57089675 | Msa1256840:three_prime_UTR | 20.0% |
!!! | AAATGAAATACAAGCTATTT+TGG | + | chr8_2:57089695-57089714 | None:intergenic | 20.0% |
!!! | AGTTAAAAATACCTGTATTT+TGG | + | chr8_2:57089749-57089768 | None:intergenic | 20.0% |
!! | ACAAAGAATTTGTAAGATTT+CGG | + | chr8_2:57090328-57090347 | None:intergenic | 20.0% |
!!! | AAATATGGTTTTGTTTATGA+TGG | - | chr8_2:57090414-57090433 | Msa1256840:intron | 20.0% |
!! | ACAAATACAATTCATGAATT+GGG | + | chr8_2:57090848-57090867 | None:intergenic | 20.0% |
!! | TACAAATACAATTCATGAAT+TGG | + | chr8_2:57090849-57090868 | None:intergenic | 20.0% |
!! | TTTATGAGAAGTTAATTCAT+TGG | - | chr8_2:57090937-57090956 | Msa1256840:intron | 20.0% |
!!! | TGGTTTTATTGTATGATATT+AGG | - | chr8_2:57090957-57090976 | Msa1256840:intron | 20.0% |
!!! | AAATTTTTCTGTGAATTTTG+TGG | - | chr8_2:57091041-57091060 | Msa1256840:intron | 20.0% |
!!! | ATCTAAGTATTTAGTTTAGT+TGG | - | chr8_2:57091105-57091124 | Msa1256840:intron | 20.0% |
!! | GAAAAATAAAAGATTGAGAA+AGG | + | chr8_2:57091283-57091302 | None:intergenic | 20.0% |
!! | AAAATATTATAATGCTACCA+TGG | + | chr8_2:57091700-57091719 | None:intergenic | 20.0% |
!!! | ATGGTAGCATTATAATATTT+TGG | - | chr8_2:57091699-57091718 | Msa1256840:intron | 20.0% |
!!! | AGGTTTTACATTTATTTTGA+AGG | - | chr8_2:57091745-57091764 | Msa1256840:intron | 20.0% |
!! | AAATTACTTCCGACTTTTAA+AGG | - | chr8_2:57089716-57089735 | Msa1256840:intron | 25.0% |
! | CTTCTGCATTATTTCATATT+GGG | + | chr8_2:57090036-57090055 | None:intergenic | 25.0% |
! | ACTTCTGCATTATTTCATAT+TGG | + | chr8_2:57090037-57090056 | None:intergenic | 25.0% |
! | AAAATAAACCAATCCAAACT+AGG | + | chr8_2:57090605-57090624 | None:intergenic | 25.0% |
!!! | TTGGTTTATTTTTGAGTTTG+TGG | - | chr8_2:57090613-57090632 | Msa1256840:intron | 25.0% |
! | GATTTATTTGTAACTCTTCA+AGG | - | chr8_2:57090905-57090924 | Msa1256840:intron | 25.0% |
! | ATGATATACAACATTACACA+AGG | + | chr8_2:57091076-57091095 | None:intergenic | 25.0% |
! | AAAAGATTGAGAAAGGAATA+AGG | + | chr8_2:57091276-57091295 | None:intergenic | 25.0% |
! | ATCAACAAAAGAAAAACACT+TGG | + | chr8_2:57091646-57091665 | None:intergenic | 25.0% |
!!! | TTTTATTTGTGATTATGTCG+AGG | - | chr8_2:57091674-57091693 | Msa1256840:intron | 25.0% |
! | TTGCGTATTCTATAACTTTA+AGG | + | chr8_2:57091725-57091744 | None:intergenic | 25.0% |
! | TAAAGTTATAGAATACGCAA+AGG | - | chr8_2:57091725-57091744 | Msa1256840:intron | 25.0% |
!! | AAATTACTTCCGACTTTTAA+AGG | - | chr8_2:57089716-57089735 | Msa1256840:intron | 25.0% |
! | CTTCTGCATTATTTCATATT+GGG | + | chr8_2:57090036-57090055 | None:intergenic | 25.0% |
! | ACTTCTGCATTATTTCATAT+TGG | + | chr8_2:57090037-57090056 | None:intergenic | 25.0% |
! | AAAATAAACCAATCCAAACT+AGG | + | chr8_2:57090605-57090624 | None:intergenic | 25.0% |
!!! | TTGGTTTATTTTTGAGTTTG+TGG | - | chr8_2:57090613-57090632 | Msa1256840:intron | 25.0% |
! | GATTTATTTGTAACTCTTCA+AGG | - | chr8_2:57090905-57090924 | Msa1256840:intron | 25.0% |
! | ATGATATACAACATTACACA+AGG | + | chr8_2:57091076-57091095 | None:intergenic | 25.0% |
! | AAAAGATTGAGAAAGGAATA+AGG | + | chr8_2:57091276-57091295 | None:intergenic | 25.0% |
! | ATCAACAAAAGAAAAACACT+TGG | + | chr8_2:57091646-57091665 | None:intergenic | 25.0% |
!!! | TTTTATTTGTGATTATGTCG+AGG | - | chr8_2:57091674-57091693 | Msa1256840:intron | 25.0% |
! | TTGCGTATTCTATAACTTTA+AGG | + | chr8_2:57091725-57091744 | None:intergenic | 25.0% |
! | TAAAGTTATAGAATACGCAA+AGG | - | chr8_2:57091725-57091744 | Msa1256840:intron | 25.0% |
ATTAAATCTTCTTTGGTCAG+TGG | - | chr8_2:57089663-57089682 | Msa1256840:three_prime_UTR | 30.0% | |
TGTTTCAGCTATTGTTTGAA+GGG | + | chr8_2:57089828-57089847 | None:intergenic | 30.0% | |
CATTATTTCATATTGGGAGA+TGG | + | chr8_2:57090030-57090049 | None:intergenic | 30.0% | |
!!! | TAAGCTATTTTTCATAAGCC+AGG | - | chr8_2:57090757-57090776 | Msa1256840:intron | 30.0% |
ACCTAAAATGTAACTACCTA+GGG | + | chr8_2:57090783-57090802 | None:intergenic | 30.0% | |
!! | TTTTAGGTGGTTTGATGTTT+TGG | - | chr8_2:57090795-57090814 | Msa1256840:intron | 30.0% |
! | TTTAGGTGGTTTGATGTTTT+GGG | - | chr8_2:57090796-57090815 | Msa1256840:intron | 30.0% |
! | TTTCTGTGAATTTTGTGGAA+AGG | - | chr8_2:57091046-57091065 | Msa1256840:intron | 30.0% |
ATAATGAGAACAAAGTCATG+AGG | + | chr8_2:57091322-57091341 | None:intergenic | 30.0% | |
! | GATTTTCCAGAGATTTACAT+TGG | - | chr8_2:57091461-57091480 | Msa1256840:intron | 30.0% |
ACAATGAAAGGAAACAACAA+AGG | + | chr8_2:57091574-57091593 | None:intergenic | 30.0% | |
TCAAAAACTATCAGGTGTTT+GGG | + | chr8_2:57091598-57091617 | None:intergenic | 30.0% | |
ATCAAAAACTATCAGGTGTT+TGG | + | chr8_2:57091599-57091618 | None:intergenic | 30.0% | |
AGTATTACTGCTTAGTAGAA+CGG | - | chr8_2:57091773-57091792 | Msa1256840:intron | 30.0% | |
ATTAAATCTTCTTTGGTCAG+TGG | - | chr8_2:57089663-57089682 | Msa1256840:three_prime_UTR | 30.0% | |
TGTTTCAGCTATTGTTTGAA+GGG | + | chr8_2:57089828-57089847 | None:intergenic | 30.0% | |
CATTATTTCATATTGGGAGA+TGG | + | chr8_2:57090030-57090049 | None:intergenic | 30.0% | |
!!! | TAAGCTATTTTTCATAAGCC+AGG | - | chr8_2:57090757-57090776 | Msa1256840:intron | 30.0% |
ACCTAAAATGTAACTACCTA+GGG | + | chr8_2:57090783-57090802 | None:intergenic | 30.0% | |
!! | TTTTAGGTGGTTTGATGTTT+TGG | - | chr8_2:57090795-57090814 | Msa1256840:intron | 30.0% |
! | TTTAGGTGGTTTGATGTTTT+GGG | - | chr8_2:57090796-57090815 | Msa1256840:intron | 30.0% |
! | TTTCTGTGAATTTTGTGGAA+AGG | - | chr8_2:57091046-57091065 | Msa1256840:intron | 30.0% |
ATAATGAGAACAAAGTCATG+AGG | + | chr8_2:57091322-57091341 | None:intergenic | 30.0% | |
! | GATTTTCCAGAGATTTACAT+TGG | - | chr8_2:57091461-57091480 | Msa1256840:intron | 30.0% |
ACAATGAAAGGAAACAACAA+AGG | + | chr8_2:57091574-57091593 | None:intergenic | 30.0% | |
TCAAAAACTATCAGGTGTTT+GGG | + | chr8_2:57091598-57091617 | None:intergenic | 30.0% | |
ATCAAAAACTATCAGGTGTT+TGG | + | chr8_2:57091599-57091618 | None:intergenic | 30.0% | |
AGTATTACTGCTTAGTAGAA+CGG | - | chr8_2:57091773-57091792 | Msa1256840:intron | 30.0% | |
TTTCAGCTATTGTTTGAAGG+GGG | + | chr8_2:57089826-57089845 | None:intergenic | 35.0% | |
GTTTCAGCTATTGTTTGAAG+GGG | + | chr8_2:57089827-57089846 | None:intergenic | 35.0% | |
CTGTTTCAGCTATTGTTTGA+AGG | + | chr8_2:57089829-57089848 | None:intergenic | 35.0% | |
! | AGATCATAGAAGTGTGAGAA+AGG | - | chr8_2:57089931-57089950 | Msa1256840:three_prime_UTR | 35.0% |
ATTGTGACTGTATGTATGAG+CGG | + | chr8_2:57090110-57090129 | None:intergenic | 35.0% | |
CACCTAAAATGTAACTACCT+AGG | + | chr8_2:57090784-57090803 | None:intergenic | 35.0% | |
! | CTAGGTAGTTACATTTTAGG+TGG | - | chr8_2:57090782-57090801 | Msa1256840:intron | 35.0% |
! | TTAGGTGGTTTGATGTTTTG+GGG | - | chr8_2:57090797-57090816 | Msa1256840:intron | 35.0% |
ATGATATTAGGTACCCGTTA+TGG | - | chr8_2:57090969-57090988 | Msa1256840:intron | 35.0% | |
GCGTAAGCAGATTAAAAAGA+TGG | - | chr8_2:57091001-57091020 | Msa1256840:intron | 35.0% | |
GGTAATTGATCATCAGAACT+CGG | + | chr8_2:57091154-57091173 | None:intergenic | 35.0% | |
GTACAACCAATGTAAATCTC+TGG | + | chr8_2:57091470-57091489 | None:intergenic | 35.0% | |
CAAAAACTATCAGGTGTTTG+GGG | + | chr8_2:57091597-57091616 | None:intergenic | 35.0% | |
GACAAGCATCAAAAACTATC+AGG | + | chr8_2:57091606-57091625 | None:intergenic | 35.0% | |
!!! | CTTAGTAGAACGGTTTTGAA+GGG | - | chr8_2:57091783-57091802 | Msa1256840:intron | 35.0% |
TAGTAGAACAATCATGCTTC+TGG | - | chr8_2:57091822-57091841 | Msa1256840:intron | 35.0% | |
TTTCAGCTATTGTTTGAAGG+GGG | + | chr8_2:57089826-57089845 | None:intergenic | 35.0% | |
GTTTCAGCTATTGTTTGAAG+GGG | + | chr8_2:57089827-57089846 | None:intergenic | 35.0% | |
CTGTTTCAGCTATTGTTTGA+AGG | + | chr8_2:57089829-57089848 | None:intergenic | 35.0% | |
! | AGATCATAGAAGTGTGAGAA+AGG | - | chr8_2:57089931-57089950 | Msa1256840:three_prime_UTR | 35.0% |
ATTGTGACTGTATGTATGAG+CGG | + | chr8_2:57090110-57090129 | None:intergenic | 35.0% | |
CACCTAAAATGTAACTACCT+AGG | + | chr8_2:57090784-57090803 | None:intergenic | 35.0% | |
! | CTAGGTAGTTACATTTTAGG+TGG | - | chr8_2:57090782-57090801 | Msa1256840:intron | 35.0% |
! | TTAGGTGGTTTGATGTTTTG+GGG | - | chr8_2:57090797-57090816 | Msa1256840:intron | 35.0% |
ATGATATTAGGTACCCGTTA+TGG | - | chr8_2:57090969-57090988 | Msa1256840:intron | 35.0% | |
GCGTAAGCAGATTAAAAAGA+TGG | - | chr8_2:57091001-57091020 | Msa1256840:intron | 35.0% | |
GGTAATTGATCATCAGAACT+CGG | + | chr8_2:57091154-57091173 | None:intergenic | 35.0% | |
GTACAACCAATGTAAATCTC+TGG | + | chr8_2:57091470-57091489 | None:intergenic | 35.0% | |
CAAAAACTATCAGGTGTTTG+GGG | + | chr8_2:57091597-57091616 | None:intergenic | 35.0% | |
GACAAGCATCAAAAACTATC+AGG | + | chr8_2:57091606-57091625 | None:intergenic | 35.0% | |
!!! | CTTAGTAGAACGGTTTTGAA+GGG | - | chr8_2:57091783-57091802 | Msa1256840:intron | 35.0% |
TAGTAGAACAATCATGCTTC+TGG | - | chr8_2:57091822-57091841 | Msa1256840:intron | 35.0% | |
! | GGCTGTCAACCTTTAAAAGT+CGG | + | chr8_2:57089728-57089747 | None:intergenic | 40.0% |
AAGGTTGACAGCCAAAATAC+AGG | - | chr8_2:57089735-57089754 | Msa1256840:intron | 40.0% | |
CACTTTCACTGAAACGATTG+AGG | - | chr8_2:57090078-57090097 | Msa1256840:three_prime_UTR | 40.0% | |
GCAGACTAAGAGAACTAAGA+AGG | - | chr8_2:57090275-57090294 | Msa1256840:intron | 40.0% | |
ACTAAGAGAACTAAGAAGGC+TGG | - | chr8_2:57090279-57090298 | Msa1256840:intron | 40.0% | |
TGACTACACCTAGTTTGGAT+TGG | - | chr8_2:57090594-57090613 | Msa1256840:intron | 40.0% | |
! | GCCCTAGGTAGTTACATTTT+AGG | - | chr8_2:57090779-57090798 | Msa1256840:intron | 40.0% |
!! | TAGGTGGTTTGATGTTTTGG+GGG | - | chr8_2:57090798-57090817 | Msa1256840:intron | 40.0% |
TACGCAAACTAGCACCATAA+CGG | + | chr8_2:57090986-57091005 | None:intergenic | 40.0% | |
!! | CAGAACTCGGCATTTTGAAA+AGG | + | chr8_2:57091141-57091160 | None:intergenic | 40.0% |
AGAGAAAGGCTGTAGGAATA+TGG | - | chr8_2:57091192-57091211 | Msa1256840:intron | 40.0% | |
GAGAAAGGCTGTAGGAATAT+GGG | - | chr8_2:57091193-57091212 | Msa1256840:intron | 40.0% | |
AGAAAGGCTGTAGGAATATG+GGG | - | chr8_2:57091194-57091213 | Msa1256840:intron | 40.0% | |
!! | GCTTAGTAGAACGGTTTTGA+AGG | - | chr8_2:57091782-57091801 | Msa1256840:intron | 40.0% |
! | GGCTGTCAACCTTTAAAAGT+CGG | + | chr8_2:57089728-57089747 | None:intergenic | 40.0% |
AAGGTTGACAGCCAAAATAC+AGG | - | chr8_2:57089735-57089754 | Msa1256840:intron | 40.0% | |
CACTTTCACTGAAACGATTG+AGG | - | chr8_2:57090078-57090097 | Msa1256840:three_prime_UTR | 40.0% | |
GCAGACTAAGAGAACTAAGA+AGG | - | chr8_2:57090275-57090294 | Msa1256840:intron | 40.0% | |
ACTAAGAGAACTAAGAAGGC+TGG | - | chr8_2:57090279-57090298 | Msa1256840:intron | 40.0% | |
TGACTACACCTAGTTTGGAT+TGG | - | chr8_2:57090594-57090613 | Msa1256840:intron | 40.0% | |
! | GCCCTAGGTAGTTACATTTT+AGG | - | chr8_2:57090779-57090798 | Msa1256840:intron | 40.0% |
!! | TAGGTGGTTTGATGTTTTGG+GGG | - | chr8_2:57090798-57090817 | Msa1256840:intron | 40.0% |
TACGCAAACTAGCACCATAA+CGG | + | chr8_2:57090986-57091005 | None:intergenic | 40.0% | |
!! | CAGAACTCGGCATTTTGAAA+AGG | + | chr8_2:57091141-57091160 | None:intergenic | 40.0% |
AGAGAAAGGCTGTAGGAATA+TGG | - | chr8_2:57091192-57091211 | Msa1256840:intron | 40.0% | |
GAGAAAGGCTGTAGGAATAT+GGG | - | chr8_2:57091193-57091212 | Msa1256840:intron | 40.0% | |
AGAAAGGCTGTAGGAATATG+GGG | - | chr8_2:57091194-57091213 | Msa1256840:intron | 40.0% | |
!! | GCTTAGTAGAACGGTTTTGA+AGG | - | chr8_2:57091782-57091801 | Msa1256840:intron | 40.0% |
ACTAAGAAGGCTGGTATCGT+TGG | - | chr8_2:57090288-57090307 | Msa1256840:CDS | 45.0% | |
GCTGGTATCGTTGGCAAATA+CGG | - | chr8_2:57090297-57090316 | Msa1256840:CDS | 45.0% | |
GTAGCTGACTACACCTAGTT+TGG | - | chr8_2:57090589-57090608 | Msa1256840:intron | 45.0% | |
! | TTTTTCATAAGCCAGGCCCT+AGG | - | chr8_2:57090764-57090783 | Msa1256840:intron | 45.0% |
AAATGTAACTACCTAGGGCC+TGG | + | chr8_2:57090778-57090797 | None:intergenic | 45.0% | |
ACGCAAACTAGCACCATAAC+GGG | + | chr8_2:57090985-57091004 | None:intergenic | 45.0% | |
TCTTCACAGCATACTGCAAC+AGG | + | chr8_2:57091175-57091194 | None:intergenic | 45.0% | |
GCAGTATGCTGTGAAGAGAA+AGG | - | chr8_2:57091178-57091197 | Msa1256840:intron | 45.0% | |
TGTAGGAATATGGGGATGCA+AGG | - | chr8_2:57091202-57091221 | Msa1256840:intron | 45.0% | |
ATATGGGGATGCAAGGATTG+CGG | - | chr8_2:57091209-57091228 | Msa1256840:intron | 45.0% | |
GATTGCGGTAAAGTGAAAGC+AGG | - | chr8_2:57091224-57091243 | Msa1256840:intron | 45.0% | |
TGAGAACAAAGTCATGAGGC+TGG | + | chr8_2:57091318-57091337 | None:intergenic | 45.0% | |
AGGTGTTTGGGGACAATGAA+AGG | + | chr8_2:57091586-57091605 | None:intergenic | 45.0% | |
TTGTGATTATGTCGAGGCCA+TGG | - | chr8_2:57091680-57091699 | Msa1256840:intron | 45.0% | |
ACTAAGAAGGCTGGTATCGT+TGG | - | chr8_2:57090288-57090307 | Msa1256840:CDS | 45.0% | |
GCTGGTATCGTTGGCAAATA+CGG | - | chr8_2:57090297-57090316 | Msa1256840:CDS | 45.0% | |
GTAGCTGACTACACCTAGTT+TGG | - | chr8_2:57090589-57090608 | Msa1256840:intron | 45.0% | |
! | TTTTTCATAAGCCAGGCCCT+AGG | - | chr8_2:57090764-57090783 | Msa1256840:intron | 45.0% |
AAATGTAACTACCTAGGGCC+TGG | + | chr8_2:57090778-57090797 | None:intergenic | 45.0% | |
ACGCAAACTAGCACCATAAC+GGG | + | chr8_2:57090985-57091004 | None:intergenic | 45.0% | |
TCTTCACAGCATACTGCAAC+AGG | + | chr8_2:57091175-57091194 | None:intergenic | 45.0% | |
GCAGTATGCTGTGAAGAGAA+AGG | - | chr8_2:57091178-57091197 | Msa1256840:intron | 45.0% | |
TGTAGGAATATGGGGATGCA+AGG | - | chr8_2:57091202-57091221 | Msa1256840:intron | 45.0% | |
ATATGGGGATGCAAGGATTG+CGG | - | chr8_2:57091209-57091228 | Msa1256840:intron | 45.0% | |
GATTGCGGTAAAGTGAAAGC+AGG | - | chr8_2:57091224-57091243 | Msa1256840:intron | 45.0% | |
TGAGAACAAAGTCATGAGGC+TGG | + | chr8_2:57091318-57091337 | None:intergenic | 45.0% | |
AGGTGTTTGGGGACAATGAA+AGG | + | chr8_2:57091586-57091605 | None:intergenic | 45.0% | |
TTGTGATTATGTCGAGGCCA+TGG | - | chr8_2:57091680-57091699 | Msa1256840:intron | 45.0% | |
AGCTATTGTTTGAAGGGGGC+TGG | + | chr8_2:57089822-57089841 | None:intergenic | 50.0% | |
GTGACTGTATGTATGAGCGG+AGG | + | chr8_2:57090107-57090126 | None:intergenic | 50.0% | |
GCTGTGAAGAGAAAGGCTGT+AGG | - | chr8_2:57091185-57091204 | Msa1256840:intron | 50.0% | |
TGCGGTAAAGTGAAAGCAGG+CGG | - | chr8_2:57091227-57091246 | Msa1256840:CDS | 50.0% | |
TTGTTCCCTCAACCTCCTGA+TGG | + | chr8_2:57091382-57091401 | None:intergenic | 50.0% | |
AGCTATTGTTTGAAGGGGGC+TGG | + | chr8_2:57089822-57089841 | None:intergenic | 50.0% | |
GTGACTGTATGTATGAGCGG+AGG | + | chr8_2:57090107-57090126 | None:intergenic | 50.0% | |
GCTGTGAAGAGAAAGGCTGT+AGG | - | chr8_2:57091185-57091204 | Msa1256840:intron | 50.0% | |
TGCGGTAAAGTGAAAGCAGG+CGG | - | chr8_2:57091227-57091246 | Msa1256840:CDS | 50.0% | |
TTGTTCCCTCAACCTCCTGA+TGG | + | chr8_2:57091382-57091401 | None:intergenic | 50.0% | |
! | CTGCAAGTGCCGTGACTGTT+CGG | - | chr8_2:57091352-57091371 | Msa1256840:intron | 55.0% |
GATGGTGCTCCGAACAGTCA+CGG | + | chr8_2:57091364-57091383 | None:intergenic | 55.0% | |
! | TGACTGTTCGGAGCACCATC+AGG | - | chr8_2:57091364-57091383 | Msa1256840:intron | 55.0% |
GAGCACCATCAGGAGGTTGA+GGG | - | chr8_2:57091374-57091393 | Msa1256840:intron | 55.0% | |
! | CTGCAAGTGCCGTGACTGTT+CGG | - | chr8_2:57091352-57091371 | Msa1256840:intron | 55.0% |
GATGGTGCTCCGAACAGTCA+CGG | + | chr8_2:57091364-57091383 | None:intergenic | 55.0% | |
! | TGACTGTTCGGAGCACCATC+AGG | - | chr8_2:57091364-57091383 | Msa1256840:intron | 55.0% |
GAGCACCATCAGGAGGTTGA+GGG | - | chr8_2:57091374-57091393 | Msa1256840:intron | 55.0% | |
! | CTGTTCGGAGCACCATCAGG+AGG | - | chr8_2:57091367-57091386 | Msa1256840:intron | 60.0% |
! | GGAGCACCATCAGGAGGTTG+AGG | - | chr8_2:57091373-57091392 | Msa1256840:intron | 60.0% |
! | CTGTTCGGAGCACCATCAGG+AGG | - | chr8_2:57091367-57091386 | Msa1256840:intron | 60.0% |
! | GGAGCACCATCAGGAGGTTG+AGG | - | chr8_2:57091373-57091392 | Msa1256840:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 57089652 | 57091893 | 57089652 | ID=Msa1256840;Name=Msa1256840 |
chr8_2 | mRNA | 57089652 | 57091893 | 57089652 | ID=Msa1256840-mRNA-1;Parent=Msa1256840;Name=Msa1256840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.66|0.83|0.8|0.66|6|443|92 |
chr8_2 | exon | 57089652 | 57089717 | 57089652 | ID=Msa1256840-mRNA-1:exon:17642;Parent=Msa1256840-mRNA-1 |
chr8_2 | exon | 57089755 | 57090195 | 57089755 | ID=Msa1256840-mRNA-1:exon:17641;Parent=Msa1256840-mRNA-1 |
chr8_2 | exon | 57090281 | 57090363 | 57090281 | ID=Msa1256840-mRNA-1:exon:17640;Parent=Msa1256840-mRNA-1 |
chr8_2 | exon | 57090478 | 57090566 | 57090478 | ID=Msa1256840-mRNA-1:exon:17639;Parent=Msa1256840-mRNA-1 |
chr8_2 | exon | 57091227 | 57091266 | 57091227 | ID=Msa1256840-mRNA-1:exon:17638;Parent=Msa1256840-mRNA-1 |
chr8_2 | exon | 57091891 | 57091893 | 57091891 | ID=Msa1256840-mRNA-1:exon:17637;Parent=Msa1256840-mRNA-1 |
chr8_2 | CDS | 57091891 | 57091893 | 57091891 | ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1 |
chr8_2 | CDS | 57091227 | 57091266 | 57091227 | ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1 |
chr8_2 | CDS | 57090478 | 57090566 | 57090478 | ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1 |
chr8_2 | CDS | 57090281 | 57090363 | 57090281 | ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1 |
chr8_2 | CDS | 57090132 | 57090195 | 57090132 | ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1 |
chr8_2 | three_prime_UTR | 57089755 | 57090131 | 57089755 | ID=Msa1256840-mRNA-1:three_prime_utr;Parent=Msa1256840-mRNA-1 |
chr8_2 | three_prime_UTR | 57089652 | 57089717 | 57089652 | ID=Msa1256840-mRNA-1:three_prime_utr;Parent=Msa1256840-mRNA-1 |
Gene Sequence |
Protein sequence |