AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1256840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256840 MtrunA17_Chr8g0336121 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1256840 MtrunA17_Chr4g0055341 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1256840 MtrunA17_Chr4g0057431 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1256840 MtrunA17_Chr8g0336341 100.000 92 0 0 1 92 1 92 7.50e-63 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256840 AT3G10950.1 93.478 92 6 0 1 92 1 92 4.50e-59 176
Msa1256840 AT3G60245.1 92.308 91 7 0 1 91 1 91 8.73e-58 172

Find 32 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCGTATTCTATAACTTTA+AGG 0.098185 8_2:+57089801 None:intergenic
ATGGTAGCATTATAATATTT+TGG 0.275986 8_2:-57089824 Msa1256840:three_prime_UTR
TAGTAGAACAATCATGCTTC+TGG 0.312516 8_2:-57089701 Msa1256840:intron
AGAGAAAGGCTGTAGGAATA+TGG 0.316747 8_2:-57090331 Msa1256840:CDS
GAGAAAGGCTGTAGGAATAT+GGG 0.416937 8_2:-57090330 Msa1256840:CDS
GCTGGTATCGTTGGCAAATA+CGG 0.433650 8_2:-57091226 Msa1256840:intron
ATGATATTAGGTACCCGTTA+TGG 0.441488 8_2:-57090554 Msa1256840:intron
GTACAACCAATGTAAATCTC+TGG 0.443007 8_2:+57090056 None:intergenic
CTGCAAGTGCCGTGACTGTT+CGG 0.445396 8_2:-57090171 Msa1256840:CDS
TGACTGTTCGGAGCACCATC+AGG 0.472923 8_2:-57090159 Msa1256840:CDS
ACGCAAACTAGCACCATAAC+GGG 0.476774 8_2:+57090541 None:intergenic
TTGTTCCCTCAACCTCCTGA+TGG 0.500191 8_2:+57090144 None:intergenic
GGAGCACCATCAGGAGGTTG+AGG 0.503709 8_2:-57090150 Msa1256840:CDS
AGGTGTTTGGGGACAATGAA+AGG 0.523148 8_2:+57089940 None:intergenic
TACGCAAACTAGCACCATAA+CGG 0.535734 8_2:+57090540 None:intergenic
AGAAAGGCTGTAGGAATATG+GGG 0.537082 8_2:-57090329 Msa1256840:CDS
ACTAAGAGAACTAAGAAGGC+TGG 0.546098 8_2:-57091244 Msa1256840:CDS
GAGCACCATCAGGAGGTTGA+GGG 0.548544 8_2:-57090149 Msa1256840:CDS
ACTAAGAAGGCTGGTATCGT+TGG 0.554051 8_2:-57091235 Msa1256840:CDS
TTGTGATTATGTCGAGGCCA+TGG 0.565752 8_2:-57089843 Msa1256840:three_prime_UTR
GCAGACTAAGAGAACTAAGA+AGG 0.566891 8_2:-57091248 Msa1256840:intron
GATTGCGGTAAAGTGAAAGC+AGG 0.587249 8_2:-57090299 Msa1256840:CDS
TGTAGGAATATGGGGATGCA+AGG 0.599232 8_2:-57090321 Msa1256840:CDS
TAAAGTTATAGAATACGCAA+AGG 0.599704 8_2:-57089798 Msa1256840:three_prime_UTR
AAAATATTATAATGCTACCA+TGG 0.603906 8_2:+57089826 None:intergenic
GATGGTGCTCCGAACAGTCA+CGG 0.619064 8_2:+57090162 None:intergenic
GCAGTATGCTGTGAAGAGAA+AGG 0.632531 8_2:-57090345 Msa1256840:intron
TGCGGTAAAGTGAAAGCAGG+CGG 0.647382 8_2:-57090296 Msa1256840:CDS
ATATGGGGATGCAAGGATTG+CGG 0.650089 8_2:-57090314 Msa1256840:CDS
GCTGTGAAGAGAAAGGCTGT+AGG 0.663437 8_2:-57090338 Msa1256840:CDS
ACAATGAAAGGAAACAACAA+AGG 0.672606 8_2:+57089952 None:intergenic
CTGTTCGGAGCACCATCAGG+AGG 0.673364 8_2:-57090156 Msa1256840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATGTATGTAAAAA+AGG - chr8_2:57089904-57089923 Msa1256840:three_prime_UTR 10.0%
!!! TTTACTAAATGTTTTAAATA+TGG - chr8_2:57090399-57090418 Msa1256840:intron 10.0%
!!! AATAAATAATATTTTATGCA+AGG - chr8_2:57090651-57090670 Msa1256840:intron 10.0%
!!! ATTATATTTTATGTAAAACA+AGG + chr8_2:57090882-57090901 None:intergenic 10.0%
!! AAAAAATATGTATGTAAAAA+AGG - chr8_2:57089904-57089923 Msa1256840:three_prime_UTR 10.0%
!!! TTTACTAAATGTTTTAAATA+TGG - chr8_2:57090399-57090418 Msa1256840:intron 10.0%
!!! AATAAATAATATTTTATGCA+AGG - chr8_2:57090651-57090670 Msa1256840:intron 10.0%
!!! ATTATATTTTATGTAAAACA+AGG + chr8_2:57090882-57090901 None:intergenic 10.0%
!! TTAATATTAAAAGCAGAAAT+AGG - chr8_2:57089796-57089815 Msa1256840:three_prime_UTR 15.0%
!! TATACATAGATATATGTATA+TGG - chr8_2:57090536-57090555 Msa1256840:CDS 15.0%
!!! TTTTATTTTTCAAATCTGAA+AGG - chr8_2:57091292-57091311 Msa1256840:intron 15.0%
!! TTAATATTAAAAGCAGAAAT+AGG - chr8_2:57089796-57089815 Msa1256840:three_prime_UTR 15.0%
!! TATACATAGATATATGTATA+TGG - chr8_2:57090536-57090555 Msa1256840:CDS 15.0%
!!! TTTTATTTTTCAAATCTGAA+AGG - chr8_2:57091292-57091311 Msa1256840:intron 15.0%
!! TAAACAGATTAAATCTTCTT+TGG - chr8_2:57089656-57089675 Msa1256840:three_prime_UTR 20.0%
!!! AAATGAAATACAAGCTATTT+TGG + chr8_2:57089695-57089714 None:intergenic 20.0%
!!! AGTTAAAAATACCTGTATTT+TGG + chr8_2:57089749-57089768 None:intergenic 20.0%
!! ACAAAGAATTTGTAAGATTT+CGG + chr8_2:57090328-57090347 None:intergenic 20.0%
!!! AAATATGGTTTTGTTTATGA+TGG - chr8_2:57090414-57090433 Msa1256840:intron 20.0%
!! ACAAATACAATTCATGAATT+GGG + chr8_2:57090848-57090867 None:intergenic 20.0%
!! TACAAATACAATTCATGAAT+TGG + chr8_2:57090849-57090868 None:intergenic 20.0%
!! TTTATGAGAAGTTAATTCAT+TGG - chr8_2:57090937-57090956 Msa1256840:intron 20.0%
!!! TGGTTTTATTGTATGATATT+AGG - chr8_2:57090957-57090976 Msa1256840:intron 20.0%
!!! AAATTTTTCTGTGAATTTTG+TGG - chr8_2:57091041-57091060 Msa1256840:intron 20.0%
!!! ATCTAAGTATTTAGTTTAGT+TGG - chr8_2:57091105-57091124 Msa1256840:intron 20.0%
!! GAAAAATAAAAGATTGAGAA+AGG + chr8_2:57091283-57091302 None:intergenic 20.0%
!! AAAATATTATAATGCTACCA+TGG + chr8_2:57091700-57091719 None:intergenic 20.0%
!!! ATGGTAGCATTATAATATTT+TGG - chr8_2:57091699-57091718 Msa1256840:intron 20.0%
!!! AGGTTTTACATTTATTTTGA+AGG - chr8_2:57091745-57091764 Msa1256840:intron 20.0%
!! TAAACAGATTAAATCTTCTT+TGG - chr8_2:57089656-57089675 Msa1256840:three_prime_UTR 20.0%
!!! AAATGAAATACAAGCTATTT+TGG + chr8_2:57089695-57089714 None:intergenic 20.0%
!!! AGTTAAAAATACCTGTATTT+TGG + chr8_2:57089749-57089768 None:intergenic 20.0%
!! ACAAAGAATTTGTAAGATTT+CGG + chr8_2:57090328-57090347 None:intergenic 20.0%
!!! AAATATGGTTTTGTTTATGA+TGG - chr8_2:57090414-57090433 Msa1256840:intron 20.0%
!! ACAAATACAATTCATGAATT+GGG + chr8_2:57090848-57090867 None:intergenic 20.0%
!! TACAAATACAATTCATGAAT+TGG + chr8_2:57090849-57090868 None:intergenic 20.0%
!! TTTATGAGAAGTTAATTCAT+TGG - chr8_2:57090937-57090956 Msa1256840:intron 20.0%
!!! TGGTTTTATTGTATGATATT+AGG - chr8_2:57090957-57090976 Msa1256840:intron 20.0%
!!! AAATTTTTCTGTGAATTTTG+TGG - chr8_2:57091041-57091060 Msa1256840:intron 20.0%
!!! ATCTAAGTATTTAGTTTAGT+TGG - chr8_2:57091105-57091124 Msa1256840:intron 20.0%
!! GAAAAATAAAAGATTGAGAA+AGG + chr8_2:57091283-57091302 None:intergenic 20.0%
!! AAAATATTATAATGCTACCA+TGG + chr8_2:57091700-57091719 None:intergenic 20.0%
!!! ATGGTAGCATTATAATATTT+TGG - chr8_2:57091699-57091718 Msa1256840:intron 20.0%
!!! AGGTTTTACATTTATTTTGA+AGG - chr8_2:57091745-57091764 Msa1256840:intron 20.0%
!! AAATTACTTCCGACTTTTAA+AGG - chr8_2:57089716-57089735 Msa1256840:intron 25.0%
! CTTCTGCATTATTTCATATT+GGG + chr8_2:57090036-57090055 None:intergenic 25.0%
! ACTTCTGCATTATTTCATAT+TGG + chr8_2:57090037-57090056 None:intergenic 25.0%
! AAAATAAACCAATCCAAACT+AGG + chr8_2:57090605-57090624 None:intergenic 25.0%
!!! TTGGTTTATTTTTGAGTTTG+TGG - chr8_2:57090613-57090632 Msa1256840:intron 25.0%
! GATTTATTTGTAACTCTTCA+AGG - chr8_2:57090905-57090924 Msa1256840:intron 25.0%
! ATGATATACAACATTACACA+AGG + chr8_2:57091076-57091095 None:intergenic 25.0%
! AAAAGATTGAGAAAGGAATA+AGG + chr8_2:57091276-57091295 None:intergenic 25.0%
! ATCAACAAAAGAAAAACACT+TGG + chr8_2:57091646-57091665 None:intergenic 25.0%
!!! TTTTATTTGTGATTATGTCG+AGG - chr8_2:57091674-57091693 Msa1256840:intron 25.0%
! TTGCGTATTCTATAACTTTA+AGG + chr8_2:57091725-57091744 None:intergenic 25.0%
! TAAAGTTATAGAATACGCAA+AGG - chr8_2:57091725-57091744 Msa1256840:intron 25.0%
!! AAATTACTTCCGACTTTTAA+AGG - chr8_2:57089716-57089735 Msa1256840:intron 25.0%
! CTTCTGCATTATTTCATATT+GGG + chr8_2:57090036-57090055 None:intergenic 25.0%
! ACTTCTGCATTATTTCATAT+TGG + chr8_2:57090037-57090056 None:intergenic 25.0%
! AAAATAAACCAATCCAAACT+AGG + chr8_2:57090605-57090624 None:intergenic 25.0%
!!! TTGGTTTATTTTTGAGTTTG+TGG - chr8_2:57090613-57090632 Msa1256840:intron 25.0%
! GATTTATTTGTAACTCTTCA+AGG - chr8_2:57090905-57090924 Msa1256840:intron 25.0%
! ATGATATACAACATTACACA+AGG + chr8_2:57091076-57091095 None:intergenic 25.0%
! AAAAGATTGAGAAAGGAATA+AGG + chr8_2:57091276-57091295 None:intergenic 25.0%
! ATCAACAAAAGAAAAACACT+TGG + chr8_2:57091646-57091665 None:intergenic 25.0%
!!! TTTTATTTGTGATTATGTCG+AGG - chr8_2:57091674-57091693 Msa1256840:intron 25.0%
! TTGCGTATTCTATAACTTTA+AGG + chr8_2:57091725-57091744 None:intergenic 25.0%
! TAAAGTTATAGAATACGCAA+AGG - chr8_2:57091725-57091744 Msa1256840:intron 25.0%
ATTAAATCTTCTTTGGTCAG+TGG - chr8_2:57089663-57089682 Msa1256840:three_prime_UTR 30.0%
TGTTTCAGCTATTGTTTGAA+GGG + chr8_2:57089828-57089847 None:intergenic 30.0%
CATTATTTCATATTGGGAGA+TGG + chr8_2:57090030-57090049 None:intergenic 30.0%
!!! TAAGCTATTTTTCATAAGCC+AGG - chr8_2:57090757-57090776 Msa1256840:intron 30.0%
ACCTAAAATGTAACTACCTA+GGG + chr8_2:57090783-57090802 None:intergenic 30.0%
!! TTTTAGGTGGTTTGATGTTT+TGG - chr8_2:57090795-57090814 Msa1256840:intron 30.0%
! TTTAGGTGGTTTGATGTTTT+GGG - chr8_2:57090796-57090815 Msa1256840:intron 30.0%
! TTTCTGTGAATTTTGTGGAA+AGG - chr8_2:57091046-57091065 Msa1256840:intron 30.0%
ATAATGAGAACAAAGTCATG+AGG + chr8_2:57091322-57091341 None:intergenic 30.0%
! GATTTTCCAGAGATTTACAT+TGG - chr8_2:57091461-57091480 Msa1256840:intron 30.0%
ACAATGAAAGGAAACAACAA+AGG + chr8_2:57091574-57091593 None:intergenic 30.0%
TCAAAAACTATCAGGTGTTT+GGG + chr8_2:57091598-57091617 None:intergenic 30.0%
ATCAAAAACTATCAGGTGTT+TGG + chr8_2:57091599-57091618 None:intergenic 30.0%
AGTATTACTGCTTAGTAGAA+CGG - chr8_2:57091773-57091792 Msa1256840:intron 30.0%
ATTAAATCTTCTTTGGTCAG+TGG - chr8_2:57089663-57089682 Msa1256840:three_prime_UTR 30.0%
TGTTTCAGCTATTGTTTGAA+GGG + chr8_2:57089828-57089847 None:intergenic 30.0%
CATTATTTCATATTGGGAGA+TGG + chr8_2:57090030-57090049 None:intergenic 30.0%
!!! TAAGCTATTTTTCATAAGCC+AGG - chr8_2:57090757-57090776 Msa1256840:intron 30.0%
ACCTAAAATGTAACTACCTA+GGG + chr8_2:57090783-57090802 None:intergenic 30.0%
!! TTTTAGGTGGTTTGATGTTT+TGG - chr8_2:57090795-57090814 Msa1256840:intron 30.0%
! TTTAGGTGGTTTGATGTTTT+GGG - chr8_2:57090796-57090815 Msa1256840:intron 30.0%
! TTTCTGTGAATTTTGTGGAA+AGG - chr8_2:57091046-57091065 Msa1256840:intron 30.0%
ATAATGAGAACAAAGTCATG+AGG + chr8_2:57091322-57091341 None:intergenic 30.0%
! GATTTTCCAGAGATTTACAT+TGG - chr8_2:57091461-57091480 Msa1256840:intron 30.0%
ACAATGAAAGGAAACAACAA+AGG + chr8_2:57091574-57091593 None:intergenic 30.0%
TCAAAAACTATCAGGTGTTT+GGG + chr8_2:57091598-57091617 None:intergenic 30.0%
ATCAAAAACTATCAGGTGTT+TGG + chr8_2:57091599-57091618 None:intergenic 30.0%
AGTATTACTGCTTAGTAGAA+CGG - chr8_2:57091773-57091792 Msa1256840:intron 30.0%
TTTCAGCTATTGTTTGAAGG+GGG + chr8_2:57089826-57089845 None:intergenic 35.0%
GTTTCAGCTATTGTTTGAAG+GGG + chr8_2:57089827-57089846 None:intergenic 35.0%
CTGTTTCAGCTATTGTTTGA+AGG + chr8_2:57089829-57089848 None:intergenic 35.0%
! AGATCATAGAAGTGTGAGAA+AGG - chr8_2:57089931-57089950 Msa1256840:three_prime_UTR 35.0%
ATTGTGACTGTATGTATGAG+CGG + chr8_2:57090110-57090129 None:intergenic 35.0%
CACCTAAAATGTAACTACCT+AGG + chr8_2:57090784-57090803 None:intergenic 35.0%
! CTAGGTAGTTACATTTTAGG+TGG - chr8_2:57090782-57090801 Msa1256840:intron 35.0%
! TTAGGTGGTTTGATGTTTTG+GGG - chr8_2:57090797-57090816 Msa1256840:intron 35.0%
ATGATATTAGGTACCCGTTA+TGG - chr8_2:57090969-57090988 Msa1256840:intron 35.0%
GCGTAAGCAGATTAAAAAGA+TGG - chr8_2:57091001-57091020 Msa1256840:intron 35.0%
GGTAATTGATCATCAGAACT+CGG + chr8_2:57091154-57091173 None:intergenic 35.0%
GTACAACCAATGTAAATCTC+TGG + chr8_2:57091470-57091489 None:intergenic 35.0%
CAAAAACTATCAGGTGTTTG+GGG + chr8_2:57091597-57091616 None:intergenic 35.0%
GACAAGCATCAAAAACTATC+AGG + chr8_2:57091606-57091625 None:intergenic 35.0%
!!! CTTAGTAGAACGGTTTTGAA+GGG - chr8_2:57091783-57091802 Msa1256840:intron 35.0%
TAGTAGAACAATCATGCTTC+TGG - chr8_2:57091822-57091841 Msa1256840:intron 35.0%
TTTCAGCTATTGTTTGAAGG+GGG + chr8_2:57089826-57089845 None:intergenic 35.0%
GTTTCAGCTATTGTTTGAAG+GGG + chr8_2:57089827-57089846 None:intergenic 35.0%
CTGTTTCAGCTATTGTTTGA+AGG + chr8_2:57089829-57089848 None:intergenic 35.0%
! AGATCATAGAAGTGTGAGAA+AGG - chr8_2:57089931-57089950 Msa1256840:three_prime_UTR 35.0%
ATTGTGACTGTATGTATGAG+CGG + chr8_2:57090110-57090129 None:intergenic 35.0%
CACCTAAAATGTAACTACCT+AGG + chr8_2:57090784-57090803 None:intergenic 35.0%
! CTAGGTAGTTACATTTTAGG+TGG - chr8_2:57090782-57090801 Msa1256840:intron 35.0%
! TTAGGTGGTTTGATGTTTTG+GGG - chr8_2:57090797-57090816 Msa1256840:intron 35.0%
ATGATATTAGGTACCCGTTA+TGG - chr8_2:57090969-57090988 Msa1256840:intron 35.0%
GCGTAAGCAGATTAAAAAGA+TGG - chr8_2:57091001-57091020 Msa1256840:intron 35.0%
GGTAATTGATCATCAGAACT+CGG + chr8_2:57091154-57091173 None:intergenic 35.0%
GTACAACCAATGTAAATCTC+TGG + chr8_2:57091470-57091489 None:intergenic 35.0%
CAAAAACTATCAGGTGTTTG+GGG + chr8_2:57091597-57091616 None:intergenic 35.0%
GACAAGCATCAAAAACTATC+AGG + chr8_2:57091606-57091625 None:intergenic 35.0%
!!! CTTAGTAGAACGGTTTTGAA+GGG - chr8_2:57091783-57091802 Msa1256840:intron 35.0%
TAGTAGAACAATCATGCTTC+TGG - chr8_2:57091822-57091841 Msa1256840:intron 35.0%
! GGCTGTCAACCTTTAAAAGT+CGG + chr8_2:57089728-57089747 None:intergenic 40.0%
AAGGTTGACAGCCAAAATAC+AGG - chr8_2:57089735-57089754 Msa1256840:intron 40.0%
CACTTTCACTGAAACGATTG+AGG - chr8_2:57090078-57090097 Msa1256840:three_prime_UTR 40.0%
GCAGACTAAGAGAACTAAGA+AGG - chr8_2:57090275-57090294 Msa1256840:intron 40.0%
ACTAAGAGAACTAAGAAGGC+TGG - chr8_2:57090279-57090298 Msa1256840:intron 40.0%
TGACTACACCTAGTTTGGAT+TGG - chr8_2:57090594-57090613 Msa1256840:intron 40.0%
! GCCCTAGGTAGTTACATTTT+AGG - chr8_2:57090779-57090798 Msa1256840:intron 40.0%
!! TAGGTGGTTTGATGTTTTGG+GGG - chr8_2:57090798-57090817 Msa1256840:intron 40.0%
TACGCAAACTAGCACCATAA+CGG + chr8_2:57090986-57091005 None:intergenic 40.0%
!! CAGAACTCGGCATTTTGAAA+AGG + chr8_2:57091141-57091160 None:intergenic 40.0%
AGAGAAAGGCTGTAGGAATA+TGG - chr8_2:57091192-57091211 Msa1256840:intron 40.0%
GAGAAAGGCTGTAGGAATAT+GGG - chr8_2:57091193-57091212 Msa1256840:intron 40.0%
AGAAAGGCTGTAGGAATATG+GGG - chr8_2:57091194-57091213 Msa1256840:intron 40.0%
!! GCTTAGTAGAACGGTTTTGA+AGG - chr8_2:57091782-57091801 Msa1256840:intron 40.0%
! GGCTGTCAACCTTTAAAAGT+CGG + chr8_2:57089728-57089747 None:intergenic 40.0%
AAGGTTGACAGCCAAAATAC+AGG - chr8_2:57089735-57089754 Msa1256840:intron 40.0%
CACTTTCACTGAAACGATTG+AGG - chr8_2:57090078-57090097 Msa1256840:three_prime_UTR 40.0%
GCAGACTAAGAGAACTAAGA+AGG - chr8_2:57090275-57090294 Msa1256840:intron 40.0%
ACTAAGAGAACTAAGAAGGC+TGG - chr8_2:57090279-57090298 Msa1256840:intron 40.0%
TGACTACACCTAGTTTGGAT+TGG - chr8_2:57090594-57090613 Msa1256840:intron 40.0%
! GCCCTAGGTAGTTACATTTT+AGG - chr8_2:57090779-57090798 Msa1256840:intron 40.0%
!! TAGGTGGTTTGATGTTTTGG+GGG - chr8_2:57090798-57090817 Msa1256840:intron 40.0%
TACGCAAACTAGCACCATAA+CGG + chr8_2:57090986-57091005 None:intergenic 40.0%
!! CAGAACTCGGCATTTTGAAA+AGG + chr8_2:57091141-57091160 None:intergenic 40.0%
AGAGAAAGGCTGTAGGAATA+TGG - chr8_2:57091192-57091211 Msa1256840:intron 40.0%
GAGAAAGGCTGTAGGAATAT+GGG - chr8_2:57091193-57091212 Msa1256840:intron 40.0%
AGAAAGGCTGTAGGAATATG+GGG - chr8_2:57091194-57091213 Msa1256840:intron 40.0%
!! GCTTAGTAGAACGGTTTTGA+AGG - chr8_2:57091782-57091801 Msa1256840:intron 40.0%
ACTAAGAAGGCTGGTATCGT+TGG - chr8_2:57090288-57090307 Msa1256840:CDS 45.0%
GCTGGTATCGTTGGCAAATA+CGG - chr8_2:57090297-57090316 Msa1256840:CDS 45.0%
GTAGCTGACTACACCTAGTT+TGG - chr8_2:57090589-57090608 Msa1256840:intron 45.0%
! TTTTTCATAAGCCAGGCCCT+AGG - chr8_2:57090764-57090783 Msa1256840:intron 45.0%
AAATGTAACTACCTAGGGCC+TGG + chr8_2:57090778-57090797 None:intergenic 45.0%
ACGCAAACTAGCACCATAAC+GGG + chr8_2:57090985-57091004 None:intergenic 45.0%
TCTTCACAGCATACTGCAAC+AGG + chr8_2:57091175-57091194 None:intergenic 45.0%
GCAGTATGCTGTGAAGAGAA+AGG - chr8_2:57091178-57091197 Msa1256840:intron 45.0%
TGTAGGAATATGGGGATGCA+AGG - chr8_2:57091202-57091221 Msa1256840:intron 45.0%
ATATGGGGATGCAAGGATTG+CGG - chr8_2:57091209-57091228 Msa1256840:intron 45.0%
GATTGCGGTAAAGTGAAAGC+AGG - chr8_2:57091224-57091243 Msa1256840:intron 45.0%
TGAGAACAAAGTCATGAGGC+TGG + chr8_2:57091318-57091337 None:intergenic 45.0%
AGGTGTTTGGGGACAATGAA+AGG + chr8_2:57091586-57091605 None:intergenic 45.0%
TTGTGATTATGTCGAGGCCA+TGG - chr8_2:57091680-57091699 Msa1256840:intron 45.0%
ACTAAGAAGGCTGGTATCGT+TGG - chr8_2:57090288-57090307 Msa1256840:CDS 45.0%
GCTGGTATCGTTGGCAAATA+CGG - chr8_2:57090297-57090316 Msa1256840:CDS 45.0%
GTAGCTGACTACACCTAGTT+TGG - chr8_2:57090589-57090608 Msa1256840:intron 45.0%
! TTTTTCATAAGCCAGGCCCT+AGG - chr8_2:57090764-57090783 Msa1256840:intron 45.0%
AAATGTAACTACCTAGGGCC+TGG + chr8_2:57090778-57090797 None:intergenic 45.0%
ACGCAAACTAGCACCATAAC+GGG + chr8_2:57090985-57091004 None:intergenic 45.0%
TCTTCACAGCATACTGCAAC+AGG + chr8_2:57091175-57091194 None:intergenic 45.0%
GCAGTATGCTGTGAAGAGAA+AGG - chr8_2:57091178-57091197 Msa1256840:intron 45.0%
TGTAGGAATATGGGGATGCA+AGG - chr8_2:57091202-57091221 Msa1256840:intron 45.0%
ATATGGGGATGCAAGGATTG+CGG - chr8_2:57091209-57091228 Msa1256840:intron 45.0%
GATTGCGGTAAAGTGAAAGC+AGG - chr8_2:57091224-57091243 Msa1256840:intron 45.0%
TGAGAACAAAGTCATGAGGC+TGG + chr8_2:57091318-57091337 None:intergenic 45.0%
AGGTGTTTGGGGACAATGAA+AGG + chr8_2:57091586-57091605 None:intergenic 45.0%
TTGTGATTATGTCGAGGCCA+TGG - chr8_2:57091680-57091699 Msa1256840:intron 45.0%
AGCTATTGTTTGAAGGGGGC+TGG + chr8_2:57089822-57089841 None:intergenic 50.0%
GTGACTGTATGTATGAGCGG+AGG + chr8_2:57090107-57090126 None:intergenic 50.0%
GCTGTGAAGAGAAAGGCTGT+AGG - chr8_2:57091185-57091204 Msa1256840:intron 50.0%
TGCGGTAAAGTGAAAGCAGG+CGG - chr8_2:57091227-57091246 Msa1256840:CDS 50.0%
TTGTTCCCTCAACCTCCTGA+TGG + chr8_2:57091382-57091401 None:intergenic 50.0%
AGCTATTGTTTGAAGGGGGC+TGG + chr8_2:57089822-57089841 None:intergenic 50.0%
GTGACTGTATGTATGAGCGG+AGG + chr8_2:57090107-57090126 None:intergenic 50.0%
GCTGTGAAGAGAAAGGCTGT+AGG - chr8_2:57091185-57091204 Msa1256840:intron 50.0%
TGCGGTAAAGTGAAAGCAGG+CGG - chr8_2:57091227-57091246 Msa1256840:CDS 50.0%
TTGTTCCCTCAACCTCCTGA+TGG + chr8_2:57091382-57091401 None:intergenic 50.0%
! CTGCAAGTGCCGTGACTGTT+CGG - chr8_2:57091352-57091371 Msa1256840:intron 55.0%
GATGGTGCTCCGAACAGTCA+CGG + chr8_2:57091364-57091383 None:intergenic 55.0%
! TGACTGTTCGGAGCACCATC+AGG - chr8_2:57091364-57091383 Msa1256840:intron 55.0%
GAGCACCATCAGGAGGTTGA+GGG - chr8_2:57091374-57091393 Msa1256840:intron 55.0%
! CTGCAAGTGCCGTGACTGTT+CGG - chr8_2:57091352-57091371 Msa1256840:intron 55.0%
GATGGTGCTCCGAACAGTCA+CGG + chr8_2:57091364-57091383 None:intergenic 55.0%
! TGACTGTTCGGAGCACCATC+AGG - chr8_2:57091364-57091383 Msa1256840:intron 55.0%
GAGCACCATCAGGAGGTTGA+GGG - chr8_2:57091374-57091393 Msa1256840:intron 55.0%
! CTGTTCGGAGCACCATCAGG+AGG - chr8_2:57091367-57091386 Msa1256840:intron 60.0%
! GGAGCACCATCAGGAGGTTG+AGG - chr8_2:57091373-57091392 Msa1256840:intron 60.0%
! CTGTTCGGAGCACCATCAGG+AGG - chr8_2:57091367-57091386 Msa1256840:intron 60.0%
! GGAGCACCATCAGGAGGTTG+AGG - chr8_2:57091373-57091392 Msa1256840:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 57089652 57091893 57089652 ID=Msa1256840;Name=Msa1256840
chr8_2 mRNA 57089652 57091893 57089652 ID=Msa1256840-mRNA-1;Parent=Msa1256840;Name=Msa1256840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.66|0.83|0.8|0.66|6|443|92
chr8_2 exon 57089652 57089717 57089652 ID=Msa1256840-mRNA-1:exon:17642;Parent=Msa1256840-mRNA-1
chr8_2 exon 57089755 57090195 57089755 ID=Msa1256840-mRNA-1:exon:17641;Parent=Msa1256840-mRNA-1
chr8_2 exon 57090281 57090363 57090281 ID=Msa1256840-mRNA-1:exon:17640;Parent=Msa1256840-mRNA-1
chr8_2 exon 57090478 57090566 57090478 ID=Msa1256840-mRNA-1:exon:17639;Parent=Msa1256840-mRNA-1
chr8_2 exon 57091227 57091266 57091227 ID=Msa1256840-mRNA-1:exon:17638;Parent=Msa1256840-mRNA-1
chr8_2 exon 57091891 57091893 57091891 ID=Msa1256840-mRNA-1:exon:17637;Parent=Msa1256840-mRNA-1
chr8_2 CDS 57091891 57091893 57091891 ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1
chr8_2 CDS 57091227 57091266 57091227 ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1
chr8_2 CDS 57090478 57090566 57090478 ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1
chr8_2 CDS 57090281 57090363 57090281 ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1
chr8_2 CDS 57090132 57090195 57090132 ID=Msa1256840-mRNA-1:cds;Parent=Msa1256840-mRNA-1
chr8_2 three_prime_UTR 57089755 57090131 57089755 ID=Msa1256840-mRNA-1:three_prime_utr;Parent=Msa1256840-mRNA-1
chr8_2 three_prime_UTR 57089652 57089717 57089652 ID=Msa1256840-mRNA-1:three_prime_utr;Parent=Msa1256840-mRNA-1
Gene Sequence

>Msa1256840

ATGACTAAGAGAACTAAGAAGGCTGGTATCGTTGGCAAATACGGTACCCGTTATGGTGCTAGTTTGCGTAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAGGCTGTAGGAATATGGGGATGCAAGGATTGCGGTAAAGTGAAAGCAGGCGGAGCTTACACTTTGAACACTGCAAGTGCCGTGACTGTTCGGAGCACCATCAGGAGGTTGAGGGAACAAACTGAAAGTTAA

Protein sequence

>Msa1256840

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*