AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0904600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904600 MtrunA17_Chr6g0452721 76.464 956 44 8 1 775 1 956 0.0 1383
Msa0904600 MtrunA17_Chr4g0059961 69.811 954 107 6 3 775 5 958 0.0 1278
Msa0904600 MtrunA17_Chr4g0072131 60.901 954 185 10 4 775 5 952 0.0 1114
Msa0904600 MtrunA17_Chr2g0333721 61.579 950 179 9 8 775 4 949 0.0 1110
Msa0904600 MtrunA17_Chr3g0138931 60.988 951 185 9 7 775 5 951 0.0 1107
Msa0904600 MtrunA17_Chr1g0148031 67.419 798 142 5 7 690 5 798 0.0 1048
Msa0904600 MtrunA17_Chr1g0148031 70.930 86 24 1 691 775 866 951 9.00e-33 136
Msa0904600 MtrunA17_Chr8g0335291 59.359 967 200 11 1 775 1 966 0.0 1046
Msa0904600 MtrunA17_Chr8g0365021 67.929 792 136 5 13 690 81 868 0.0 1037
Msa0904600 MtrunA17_Chr8g0365021 55.294 85 37 1 691 775 960 1043 3.43e-23 105
Msa0904600 MtrunA17_Chr2g0304941 66.245 791 149 5 14 690 13 799 0.0 1031
Msa0904600 MtrunA17_Chr1g0147981 67.598 787 137 5 18 690 33 815 0.0 1030
Msa0904600 MtrunA17_Chr1g0147981 41.935 124 66 1 652 775 850 967 2.70e-25 112
Msa0904600 MtrunA17_Chr2g0298031 66.458 799 149 6 7 690 10 804 0.0 1029
Msa0904600 MtrunA17_Chr2g0298031 51.587 126 53 2 652 775 839 958 6.02e-32 133
Msa0904600 MtrunA17_Chr4g0065481 66.162 792 150 5 13 690 12 799 0.0 1026
Msa0904600 MtrunA17_Chr4g0065481 63.529 85 28 1 691 775 867 948 4.81e-26 115
Msa0904600 MtrunA17_Chr7g0276551 59.972 712 162 8 182 775 6 712 0.0 816
Msa0904600 MtrunA17_Chr7g0276541 49.200 250 53 4 13 190 18 265 1.33e-64 217
Msa0904600 MtrunA17_Chr3g0134951 28.090 356 213 10 310 622 493 848 6.36e-28 120
Msa0904600 MtrunA17_Chr5g0413881 63.636 77 27 1 292 367 6 82 7.87e-25 101
Msa0904600 MtrunA17_Chr5g0423831 50.000 92 39 1 292 383 55 139 9.87e-22 94.7
Msa0904600 MtrunA17_Chr7g0263361 31.970 269 152 8 383 622 626 892 9.10e-21 98.2
Msa0904600 MtrunA17_Chr8g0346461 31.071 280 150 7 383 627 619 890 9.79e-21 98.2
Msa0904600 MtrunA17_Chr6g0474841 47.826 92 41 1 292 383 55 139 2.26e-20 90.9
Msa0904600 MtrunA17_Chr4g0054021 25.773 291 185 7 287 548 461 749 5.32e-20 95.5
Msa0904600 MtrunA17_Chr8g0381711 20.357 560 340 14 102 560 149 703 1.36e-19 94.4
Msa0904600 MtrunA17_Chr1g0181471 67.925 53 17 0 356 408 29 81 1.06e-17 79.0
Msa0904600 MtrunA17_Chr4g0020551 23.723 274 173 7 303 544 488 757 5.09e-17 85.9
Msa0904600 MtrunA17_Chr7g0260401 24.776 335 189 14 281 562 544 868 6.43e-17 85.9
Msa0904600 MtrunA17_Chr8g0382071 24.399 291 187 8 285 544 534 822 1.40e-16 84.7
Msa0904600 MtrunA17_Chr5g0401211 25.436 287 183 8 287 544 538 822 1.48e-16 84.3
Msa0904600 MtrunA17_Chr8g0340261 23.973 292 172 10 304 551 93 378 4.72e-16 82.0
Msa0904600 MtrunA17_Chr3g0134771 26.370 292 173 11 287 544 541 824 7.89e-16 82.0
Msa0904600 MtrunA17_Chr1g0173111 23.427 286 189 8 287 544 536 819 8.80e-15 79.0
Msa0904600 MtrunA17_Chr8g0374391 29.947 187 110 4 382 565 34 202 2.41e-14 73.6
Msa0904600 MtrunA17_Chr8g0374331 29.947 187 110 4 382 565 41 209 3.04e-14 73.6
Msa0904600 MtrunA17_Chr2g0298871 23.906 297 176 10 292 544 584 874 8.61e-14 75.5
Msa0904600 MtrunA17_Chr6g0456201 22.742 299 167 11 304 551 541 826 1.14e-13 75.1
Msa0904600 MtrunA17_Chr4g0002331 23.891 293 178 11 293 544 599 887 1.56e-13 74.7
Msa0904600 MtrunA17_Chr5g0397621 34.375 128 73 3 441 565 741 860 1.95e-12 71.2
Msa0904600 MtrunA17_Chr2g0297051 38.710 93 57 0 452 544 874 966 2.16e-12 70.9
Msa0904600 MtrunA17_Chr8g0339181 37.815 119 67 3 451 565 811 926 4.30e-12 70.1
Msa0904600 MtrunA17_Chr4g0052521 32.479 117 74 2 452 565 842 956 2.83e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0904600 AT5G62670.1 69.770 956 108 8 1 775 1 956 0.0 1274
Msa0904600 AT3G47950.1 68.973 954 115 7 3 775 7 960 0.0 1256
Msa0904600 AT3G47950.2 68.973 954 115 7 3 775 7 960 0.0 1256
Msa0904600 AT2G18960.1 60.988 951 185 10 7 775 3 949 0.0 1078
Msa0904600 AT4G30190.1 60.988 951 184 11 7 775 3 948 0.0 1077
Msa0904600 AT1G80660.1 58.996 956 206 10 2 775 3 954 0.0 1063
Msa0904600 AT4G30190.2 58.943 984 184 12 7 775 3 981 0.0 1059
Msa0904600 AT3G60330.2 65.842 808 150 7 6 690 5 809 0.0 1057
Msa0904600 AT3G60330.2 54.651 86 37 2 691 775 877 961 7.36e-19 92.4
Msa0904600 AT3G60330.1 65.842 808 150 7 6 690 5 809 0.0 1057
Msa0904600 AT3G60330.1 54.651 86 37 2 691 775 877 961 7.36e-19 92.4
Msa0904600 AT3G60330.4 65.842 808 150 7 6 690 5 809 0.0 1056
Msa0904600 AT3G60330.4 54.651 86 37 2 691 775 877 961 7.05e-19 92.4
Msa0904600 AT3G60330.3 65.842 808 150 7 6 690 5 809 0.0 1056
Msa0904600 AT3G60330.3 54.651 86 37 2 691 775 877 961 7.05e-19 92.4
Msa0904600 AT3G42640.1 66.919 792 144 5 13 690 12 799 0.0 1052
Msa0904600 AT3G42640.1 71.765 85 21 2 691 775 867 948 1.44e-29 126
Msa0904600 AT2G07560.1 66.919 792 143 6 13 690 12 798 0.0 1050
Msa0904600 AT2G07560.1 68.235 85 26 1 691 775 866 949 4.93e-30 128
Msa0904600 AT5G57350.4 66.792 798 147 5 7 690 4 797 0.0 1046
Msa0904600 AT5G57350.4 62.366 93 31 3 684 775 860 949 5.59e-25 112
Msa0904600 AT5G57350.2 66.792 798 147 5 7 690 4 797 0.0 1046
Msa0904600 AT5G57350.2 62.366 93 31 3 684 775 860 949 5.59e-25 112
Msa0904600 AT5G57350.1 66.792 798 147 5 7 690 4 797 0.0 1046
Msa0904600 AT5G57350.1 62.366 93 31 3 684 775 860 949 5.59e-25 112
Msa0904600 AT2G24520.2 65.668 801 157 5 4 690 45 841 0.0 1038
Msa0904600 AT2G24520.2 68.605 86 26 1 691 775 909 994 7.25e-31 130
Msa0904600 AT2G24520.3 66.496 782 144 5 23 690 1 778 0.0 1028
Msa0904600 AT2G24520.3 68.605 86 26 1 691 775 846 931 5.29e-31 131
Msa0904600 AT2G24520.1 66.496 782 144 5 23 690 1 778 0.0 1028
Msa0904600 AT2G24520.1 68.605 86 26 1 691 775 846 931 5.29e-31 131
Msa0904600 AT1G80660.3 65.255 803 161 5 2 690 3 801 0.0 1023
Msa0904600 AT1G80660.4 65.255 803 161 5 2 690 3 801 0.0 1023
Msa0904600 AT2G18960.3 61.080 889 160 10 69 775 1 885 0.0 998
Msa0904600 AT2G18960.2 61.080 889 160 10 69 775 1 885 0.0 998
Msa0904600 AT1G17260.1 62.500 792 178 6 13 690 17 803 0.0 958
Msa0904600 AT1G80660.2 70.462 650 127 4 102 690 27 672 0.0 922
Msa0904600 AT1G80660.2 63.953 86 30 1 691 775 740 825 1.25e-28 123
Msa0904600 AT5G57350.3 70.872 539 99 3 206 690 1 535 0.0 776
Msa0904600 AT5G57350.3 62.366 93 31 3 684 775 598 687 4.07e-25 111
Msa0904600 AT2G24520.4 70.686 539 100 3 206 690 1 535 0.0 761
Msa0904600 AT2G24520.4 68.605 86 26 1 691 775 603 688 3.14e-31 130
Msa0904600 AT4G11730.1 44.800 750 279 21 17 689 17 708 4.16e-171 513
Msa0904600 AT1G10130.1 28.954 373 213 11 297 623 482 848 8.07e-32 134
Msa0904600 AT4G00900.2 28.321 399 207 14 297 627 499 886 5.21e-24 108
Msa0904600 AT4G00900.1 28.321 399 207 14 297 627 499 886 5.21e-24 108
Msa0904600 AT1G07810.1 27.907 387 223 12 297 627 504 890 2.36e-22 103
Msa0904600 AT1G07670.2 28.571 392 214 12 297 627 504 890 2.66e-22 103
Msa0904600 AT1G07670.1 28.571 392 214 12 297 627 504 890 2.66e-22 103
Msa0904600 AT1G27770.3 26.644 289 177 9 287 544 478 762 5.16e-19 92.8
Msa0904600 AT1G27770.4 26.644 289 177 9 287 544 541 825 6.66e-19 92.4
Msa0904600 AT1G27770.1 26.644 289 177 9 287 544 541 825 6.66e-19 92.4
Msa0904600 AT2G22950.1 24.658 292 180 9 287 544 538 823 7.88e-19 92.4
Msa0904600 AT4G37640.1 23.288 292 184 9 287 544 537 822 2.62e-18 90.5
Msa0904600 AT1G63440.1 31.937 191 101 6 382 565 786 954 1.45e-15 81.6
Msa0904600 AT4G29900.1 24.653 288 171 10 299 544 573 856 2.45e-15 80.9
Msa0904600 AT4G29900.2 24.653 288 171 10 299 544 573 856 2.45e-15 80.9
Msa0904600 AT3G22910.1 23.810 294 174 10 299 551 538 822 8.78e-15 79.3
Msa0904600 AT3G57330.2 24.444 270 172 8 303 544 493 758 1.24e-14 78.6
Msa0904600 AT3G57330.1 24.126 286 185 8 287 544 532 813 1.63e-14 78.2
Msa0904600 AT3G63380.1 26.148 283 168 12 304 551 550 826 1.81e-14 78.2
Msa0904600 AT2G41560.2 24.221 289 181 9 287 544 433 714 3.09e-14 77.4
Msa0904600 AT2G41560.3 24.221 289 181 9 287 544 433 714 3.09e-14 77.4
Msa0904600 AT2G41560.4 24.221 289 181 9 287 544 433 714 3.09e-14 77.4
Msa0904600 AT5G57110.1 23.810 315 188 11 292 562 563 869 3.33e-14 77.4
Msa0904600 AT5G57110.3 23.810 315 188 11 292 562 563 869 3.33e-14 77.4
Msa0904600 AT5G57110.2 23.810 315 188 11 292 562 563 869 3.33e-14 77.4
Msa0904600 AT2G41560.1 23.427 286 187 7 287 544 535 816 5.37e-14 76.6
Msa0904600 AT5G44790.1 27.778 234 131 8 336 564 764 964 1.27e-12 72.4
Msa0904600 AT5G53010.1 22.075 530 316 20 55 544 386 858 1.06e-11 69.3
Msa0904600 AT5G21930.3 34.234 111 64 3 456 561 717 823 1.83e-11 68.6
Msa0904600 AT5G21930.2 34.234 111 64 3 456 561 740 846 1.93e-11 68.2
Msa0904600 AT5G21930.1 34.234 111 64 3 456 561 740 846 1.93e-11 68.2
Msa0904600 AT3G21180.1 22.727 308 181 12 283 544 573 869 8.20e-11 66.2

Find 175 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCTTGGTGGTTATT+TGG 0.154593 6_2:+2385206 Msa0904600:CDS
TTTACTAGGAAGAAAGATTT+TGG 0.157577 6_2:+2386672 Msa0904600:intron
GCTATAGATGCTGCTATTAT+AGG 0.211642 6_2:+2382397 Msa0904600:CDS
AGATAAAAGTATACCTCTTT+TGG 0.221054 6_2:-2382433 None:intergenic
CTGTGTAATTCTTCATTCTT+TGG 0.231219 6_2:-2384298 None:intergenic
ATAGCCAAAACCCAAGATTT+TGG 0.241176 6_2:-2379636 None:intergenic
CAATTCCTTCATCCTTGTTC+TGG 0.245244 6_2:-2383715 None:intergenic
ATATAGTGATATTCACTTAA+AGG 0.246161 6_2:+2379597 Msa0904600:five_prime_UTR
AGGAAGAACGTGAACTTAAA+TGG 0.268903 6_2:+2386697 Msa0904600:CDS
ACCGGAGTTCATACCTTCTT+TGG 0.270815 6_2:+2381454 Msa0904600:CDS
TTTACCACTGGAATAATTCT+TGG 0.289655 6_2:+2385195 Msa0904600:CDS
CAAGAGAGGTTGGCTATCTT+TGG 0.291199 6_2:+2380009 Msa0904600:CDS
AAACAGGTCCTAACTTCAAT+TGG 0.308835 6_2:+2381670 Msa0904600:intron
GCTCTTAAGAAAGCAGATAT+TGG 0.323411 6_2:+2384164 Msa0904600:CDS
TCTGCCAGCTTCCAGCTATC+TGG 0.329894 6_2:-2385168 None:intergenic
GTGACCGCGTTACAAATATA+AGG 0.333271 6_2:-2385637 None:intergenic
ACAGCTTGGTTTCATGTTAC+TGG 0.335735 6_2:+2384523 Msa0904600:intron
GTTTGAAACACTTCCTCAAT+TGG 0.340289 6_2:-2379946 None:intergenic
TACAATTATGACAATATCTA+AGG 0.346291 6_2:+2385122 Msa0904600:CDS
AAAAGTTCCCAATTGAAGTT+AGG 0.347133 6_2:-2381678 None:intergenic
AGCACCAAAATCTTGGGTTT+TGG 0.350075 6_2:+2379632 Msa0904600:five_prime_UTR
AGCTTCCAGCTATCTGGATA+TGG 0.370436 6_2:-2385162 None:intergenic
TGGCTTTCTTTCTTTCCATC+AGG 0.370843 6_2:-2383348 None:intergenic
TTCAGGCTCTACATGCAAAC+AGG 0.371019 6_2:+2381405 Msa0904600:intron
ACTTTGCAGCACCAAAATCT+TGG 0.373149 6_2:+2379625 Msa0904600:five_prime_UTR
AATCTACTTGTGCTTCTCAT+TGG 0.384442 6_2:+2381787 Msa0904600:CDS
TCATGTTACTGGCACTCATA+TGG 0.386168 6_2:+2384534 Msa0904600:CDS
TACCCTTCATCAGCTTTATT+AGG 0.388189 6_2:+2383692 Msa0904600:CDS
AGCAATCATGGCTATTGCTT+TGG 0.388777 6_2:+2380486 Msa0904600:CDS
CCGTTGTTCTCATGGCTGCT+CGG 0.401363 6_2:+2382350 Msa0904600:CDS
GAAGCAGTTGTTATTGCAAC+CGG 0.405843 6_2:+2381436 Msa0904600:CDS
CTATAGATGCTGCTATTATA+GGG 0.408529 6_2:+2382398 Msa0904600:CDS
TGTCTAGGTGGGTCGAATAA+AGG 0.409705 6_2:-2383402 None:intergenic
CGCAGATACCGTTGTTCTCA+TGG 0.409745 6_2:+2382342 Msa0904600:CDS
GGAAGACCCTGGCAGTTTAT+CGG 0.412766 6_2:+2383372 Msa0904600:CDS
TTTGAAAGAAGCTGTTGATT+TGG 0.414077 6_2:+2379692 Msa0904600:CDS
CTTTGCAGCACCAAAATCTT+GGG 0.416099 6_2:+2379626 Msa0904600:five_prime_UTR
CAACAAACTTGAGGAGAAAC+AGG 0.419706 6_2:+2380035 Msa0904600:CDS
GACTAATTGTACTAACTTGT+AGG 0.425640 6_2:-2385610 None:intergenic
CAGAACAAGGATGAAGGAAT+TGG 0.430435 6_2:+2383716 Msa0904600:CDS
ATTATTGCTATTCTTAATGA+TGG 0.431040 6_2:+2384587 Msa0904600:CDS
TCGTGAAACGTTTGCAAGCT+AGG 0.431221 6_2:+2384096 Msa0904600:CDS
CCCGATTGGCAAGACTTTGT+TGG 0.434147 6_2:+2380858 Msa0904600:CDS
GCGGATGCTCGTCTACTTGA+AGG 0.435789 6_2:+2381208 Msa0904600:CDS
GAAGACCCTGGCAGTTTATC+GGG 0.439212 6_2:+2383373 Msa0904600:CDS
CAGCAAAGGTGCACCGGAGC+AGG 0.439813 6_2:+2383030 Msa0904600:CDS
CCGCTTGTCAGTAGGATTGA+AGG 0.441619 6_2:-2382963 None:intergenic
ACCAACAAAGTCTTGCCAAT+CGG 0.448698 6_2:-2380859 None:intergenic
TCGCTGAACATCTTGGTCTC+TGG 0.452631 6_2:-2386756 None:intergenic
CCAACAAAGTCTTGCCAATC+GGG 0.453514 6_2:-2380858 None:intergenic
CGTTGTTCTCATGGCTGCTC+GGG 0.455110 6_2:+2382351 Msa0904600:CDS
TCTTTGGAATATTGCTCGAC+TGG 0.456373 6_2:-2384282 None:intergenic
AAAATGCCCGACTTGATTTG+TGG 0.456751 6_2:-2381500 None:intergenic
AACAGGTCCTAACTTCAATT+GGG 0.464044 6_2:+2381671 Msa0904600:intron
CTATCAATAGCGAAAGAAAC+AGG 0.465607 6_2:+2383641 Msa0904600:CDS
TTCTTTCAAAACAGCATGCA+TGG 0.467488 6_2:-2379679 None:intergenic
ATCACACCGCTTAGCTCAGC+AGG 0.468037 6_2:+2381861 Msa0904600:CDS
CTACTTGTGCTTCTCATTGG+AGG 0.470393 6_2:+2381790 Msa0904600:CDS
TTGTAACGCGGTCACGGAGC+TGG 0.472572 6_2:+2385645 Msa0904600:CDS
ATGGCTATTGCTTTGGCCAA+TGG 0.472871 6_2:+2380493 Msa0904600:CDS
CATGAGCCCGATAAACTGCC+AGG 0.473886 6_2:-2383379 None:intergenic
TGTGCGTTCGCTGAACATCT+TGG 0.474953 6_2:-2386763 None:intergenic
AGGAAGTGTTTCAAACTTTG+AGG 0.475521 6_2:+2379953 Msa0904600:CDS
GGAAGAACGTGAACTTAAAT+GGG 0.475742 6_2:+2386698 Msa0904600:CDS
GATGGAAGCTGCAGCAATCA+TGG 0.476351 6_2:+2380474 Msa0904600:CDS
TCAAATCATCAACTGGTAAG+AGG 0.477216 6_2:-2383739 None:intergenic
TTATGTGGAATCCTCTCTCA+TGG 0.477803 6_2:+2380449 Msa0904600:CDS
TTGTCAGTTACAATGGCAAT+CGG 0.478161 6_2:+2381838 Msa0904600:CDS
AAAACTGTAGGCATGGCAAT+AGG 0.478202 6_2:-2381817 None:intergenic
TAAACTGCCAGGGTCTTCCT+TGG 0.481195 6_2:-2383368 None:intergenic
TAGCAGCATCTATAGCATCT+TGG 0.482236 6_2:-2382390 None:intergenic
ATCGATAAATTTGCCGAGCG+AGG 0.483664 6_2:+2383191 Msa0904600:CDS
CATGCGCAAAGAACACTTCA+TGG 0.485207 6_2:+2386723 Msa0904600:CDS
ATATCTGCTTTCTTAAGAGC+AGG 0.486559 6_2:-2384161 None:intergenic
TGACCGCGTTACAAATATAA+GGG 0.488531 6_2:-2385636 None:intergenic
GCAATAATCAGTACCATGAA+TGG 0.491716 6_2:-2384572 None:intergenic
GCAGGAAAATGTGCCAATTG+AGG 0.492434 6_2:+2379933 Msa0904600:intron
ACAAGTTAGTACAATTAGTC+AGG 0.493434 6_2:+2385613 Msa0904600:CDS
GTCTCTTGCTGTAGCCTACC+AGG 0.493769 6_2:+2383220 Msa0904600:CDS
AAAGAAACAGGACGCCGTCT+AGG 0.493787 6_2:+2383653 Msa0904600:CDS
TTATATTTGTAACGCGGTCA+CGG 0.495775 6_2:+2385639 Msa0904600:CDS
AACAGGACGCCGTCTAGGAA+TGG 0.496195 6_2:+2383658 Msa0904600:CDS
ACAGGACGCCGTCTAGGAAT+GGG 0.500151 6_2:+2383659 Msa0904600:CDS
ACCACTGGAATAATTCTTGG+TGG 0.502720 6_2:+2385198 Msa0904600:CDS
CTGAACATCTTGGTCTCTGG+CGG 0.504462 6_2:-2386753 None:intergenic
TCCGAAAATTAGGCAAGGGC+TGG 0.508108 6_2:+2382917 Msa0904600:intron
TGAGTCAGTGGTTAGAATGA+AGG 0.509025 6_2:+2387004 Msa0904600:CDS
AAGTCTTCAGAAAGAGGATA+GGG 0.511532 6_2:+2385556 Msa0904600:CDS
TCGATAAATTTGCCGAGCGA+GGG 0.514954 6_2:+2383192 Msa0904600:CDS
AGGGAAGAAAGTGAACCTCT+TGG 0.519063 6_2:-2382943 None:intergenic
TGGCCTAATAAAGCTGATGA+AGG 0.520382 6_2:-2383695 None:intergenic
CAAGTCTTCAGAAAGAGGAT+AGG 0.529848 6_2:+2385555 Msa0904600:CDS
CTATATAACTTACTACAATA+CGG 0.532473 6_2:-2384432 None:intergenic
TCAAGTAGACGAGCATCCGC+AGG 0.533069 6_2:-2381205 None:intergenic
ACTTTGAGGTGTGATTCAAA+TGG 0.534258 6_2:+2379967 Msa0904600:CDS
CATCTCCATATCCAGATAGC+TGG 0.535373 6_2:+2385157 Msa0904600:CDS
TCGTGTCAGCAAAGGTGCAC+CGG 0.535676 6_2:+2383024 Msa0904600:CDS
AATGGCTGCTCAAGAGAGGT+TGG 0.536026 6_2:+2379999 Msa0904600:CDS
AAGAGACCGCAACCCTCGCT+CGG 0.537570 6_2:-2383204 None:intergenic
TGTATATGTTCAATTGCTGT+GGG 0.538145 6_2:+2381700 Msa0904600:CDS
CAGCTATCTGGATATGGAGA+TGG 0.538271 6_2:-2385156 None:intergenic
CGCTTGTCAGTAGGATTGAA+GGG 0.540375 6_2:-2382962 None:intergenic
TTAGGCCAGAACAAGGATGA+AGG 0.541544 6_2:+2383710 Msa0904600:CDS
AGTTCATACCTTCTTTGGCA+AGG 0.542004 6_2:+2381459 Msa0904600:CDS
GAATCCTCTCTCATGGGTGA+TGG 0.543395 6_2:+2380456 Msa0904600:CDS
TTGTATATGTTCAATTGCTG+TGG 0.544457 6_2:+2381699 Msa0904600:CDS
CAACACCGAAAATATCGTCC+AGG 0.545951 6_2:+2381757 Msa0904600:CDS
ATGAGCAGCCTTGCCAAAGA+AGG 0.546678 6_2:-2381467 None:intergenic
TGAACATCTTGGTCTCTGGC+GGG 0.548033 6_2:-2386752 None:intergenic
AAAGCGACTTACTCCTCCAT+TGG 0.548089 6_2:-2380509 None:intergenic
TCGACTCCACAAATCAAGTC+GGG 0.549673 6_2:+2381494 Msa0904600:CDS
AGTATCAAGTCTTCAGAAAG+AGG 0.550795 6_2:+2385550 Msa0904600:CDS
TAGAGAGTTGCACACACTCA+AGG 0.554758 6_2:+2386974 Msa0904600:CDS
GCTGCTATTATAGGGATGCT+AGG 0.555095 6_2:+2382406 Msa0904600:CDS
ATATCCAGATAGCTGGAAGC+TGG 0.555818 6_2:+2385164 Msa0904600:CDS
ATTTCTCAGGAAGTTCCTGA+TGG 0.561899 6_2:+2383333 Msa0904600:intron
TGCACTTGATCAATCTTCAA+CGG 0.566859 6_2:-2381235 None:intergenic
GCTTAATCAGATGGCTGAAG+AGG 0.568472 6_2:+2386797 Msa0904600:CDS
GTCTCTGCACTATCATGTCT+AGG 0.570571 6_2:-2383417 None:intergenic
AACTGACAAAACTGTAGGCA+TGG 0.573248 6_2:-2381824 None:intergenic
TTTAGAATAAACCACCCGAT+TGG 0.574162 6_2:+2380844 Msa0904600:intron
GCTATTGCTTTGGCCAATGG+AGG 0.574253 6_2:+2380496 Msa0904600:CDS
GATATAATTAGTGTTAAGCT+AGG 0.575911 6_2:+2381172 Msa0904600:CDS
CTGCACTATCATGTCTAGGT+GGG 0.578575 6_2:-2383413 None:intergenic
CAAGCTAGGAAACACATATG+TGG 0.579952 6_2:+2384110 Msa0904600:CDS
GATAAGAAAGATACCTGCTC+CGG 0.581935 6_2:-2383043 None:intergenic
TTATACAGAGCTTAATCAGA+TGG 0.582493 6_2:+2386788 Msa0904600:CDS
CAACAATGGCTGCTCAAGAG+AGG 0.585456 6_2:+2379995 Msa0904600:CDS
AGCATCATTAACACCATCAC+CGG 0.586529 6_2:-2384138 None:intergenic
TCTGCACTATCATGTCTAGG+TGG 0.589479 6_2:-2383414 None:intergenic
GAGTCAGTGGTTAGAATGAA+GGG 0.589667 6_2:+2387005 Msa0904600:CDS
AGAGCTGTCCGCTTGTCAGT+AGG 0.589819 6_2:-2382971 None:intergenic
GACATTGTTCTAACAGAACC+AGG 0.590210 6_2:+2384230 Msa0904600:CDS
CTTTGGTCACAACAAACTTG+AGG 0.591192 6_2:+2380026 Msa0904600:CDS
AAGAAAGCCAAGGAAGACCC+TGG 0.591526 6_2:+2383361 Msa0904600:CDS
GGCTGCTCGGGCTTCCAGAG+TGG 0.595254 6_2:+2382363 Msa0904600:CDS
CAAGGGCCATGTTGAGTCAG+TGG 0.596777 6_2:+2386992 Msa0904600:CDS
GCCAAAGAAGGTATGAACTC+CGG 0.600679 6_2:-2381455 None:intergenic
AAACACATATGTGGAATGAC+CGG 0.600729 6_2:+2384119 Msa0904600:CDS
AGCTTTATTAGGCCAGAACA+AGG 0.601027 6_2:+2383703 Msa0904600:CDS
AGAGAGTTGCACACACTCAA+GGG 0.602510 6_2:+2386975 Msa0904600:CDS
TTCTAACCACTGACTCAACA+TGG 0.609744 6_2:-2386998 None:intergenic
ACAAGTAGATTATCAATCCC+TGG 0.610553 6_2:-2381775 None:intergenic
GATGCTAGGTGATCCAAAAG+AGG 0.610581 6_2:+2382420 Msa0904600:CDS
GTCGACTCCACAAATCAAGT+CGG 0.610771 6_2:+2381493 Msa0904600:CDS
CTGGCAGAGATATTTACCAC+TGG 0.610974 6_2:+2385183 Msa0904600:CDS
GGCCTAATAAAGCTGATGAA+GGG 0.611297 6_2:-2383694 None:intergenic
ATAATCAGTACCATGAATGG+TGG 0.613663 6_2:-2384569 None:intergenic
ATTGTAACTGACAAAACTGT+AGG 0.615514 6_2:-2381829 None:intergenic
TATGTGGAATCCTCTCTCAT+GGG 0.616529 6_2:+2380450 Msa0904600:CDS
AAAATGCATCGTGTCAGCAA+AGG 0.617045 6_2:+2383016 Msa0904600:CDS
AACTTGTAGGTATATTGCTG+AGG 0.623813 6_2:-2385597 None:intergenic
TGTTAGTTCCCATTCCTAGA+CGG 0.624630 6_2:-2383667 None:intergenic
TATTGCTCGACTGGTCAGCA+CGG 0.628408 6_2:-2384273 None:intergenic
GCTTCCATCACCCATGAGAG+AGG 0.629828 6_2:-2380460 None:intergenic
AATTTGCCGAGCGAGGGTTG+CGG 0.634870 6_2:+2383198 Msa0904600:CDS
CCTTCAATCCTACTGACAAG+CGG 0.635026 6_2:+2382963 Msa0904600:CDS
TGGTTCTGTTAGAACAATGT+CGG 0.638365 6_2:-2384228 None:intergenic
CTAATGATAACACTGAGACC+TGG 0.638435 6_2:-2384248 None:intergenic
ATATGAAACATATACCTGGT+AGG 0.642335 6_2:-2383234 None:intergenic
ATATGTGGAATGACCGGTGA+TGG 0.646343 6_2:+2384125 Msa0904600:CDS
TTCAAATGGACTCACAACAA+TGG 0.646931 6_2:+2379981 Msa0904600:CDS
AACACCGAAAATATCGTCCA+GGG 0.647523 6_2:+2381758 Msa0904600:CDS
ATGAGCCCGATAAACTGCCA+GGG 0.651878 6_2:-2383378 None:intergenic
ACAAAGTCTTGCCAATCGGG+TGG 0.654696 6_2:-2380855 None:intergenic
TGTCTACCTGCTGAGCTAAG+CGG 0.655328 6_2:-2381867 None:intergenic
CAAGTAGACGAGCATCCGCA+GGG 0.659972 6_2:-2381204 None:intergenic
TCAGGCTCTACATGCAAACA+GGG 0.668111 6_2:+2381406 Msa0904600:intron
GATGGAAAGAAAGAAAGCCA+AGG 0.670475 6_2:+2383351 Msa0904600:CDS
ACCACCAAGAATTATTCCAG+TGG 0.688008 6_2:-2385199 None:intergenic
GGCAAGGGCTGGTATCCAAG+AGG 0.697798 6_2:+2382928 Msa0904600:intron
AGGCCCTTATATTTGTAACG+CGG 0.707964 6_2:+2385633 Msa0904600:CDS
GCTGCTACAAGTAACAAACC+CGG 0.711018 6_2:-2385683 None:intergenic
CCGAGCAGCCATGAGAACAA+CGG 0.711310 6_2:-2382350 None:intergenic
GCTAGGTGATATTATCCCTG+CGG 0.716733 6_2:+2381189 Msa0904600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATGTAATAACATAT+TGG + chr6_2:2382748-2382767 Msa0904600:intron 10.0%
!!! TTTTTATAGATTTTTGCTAA+AGG + chr6_2:2382313-2382332 Msa0904600:intron 15.0%
!!! TGTTTTTTCACAATAATTTA+TGG - chr6_2:2383876-2383895 None:intergenic 15.0%
!! ATATTAAGTGAATAATATCA+AGG - chr6_2:2384813-2384832 None:intergenic 15.0%
!! AAAAAATTGATTAAAAAGAC+AGG - chr6_2:2385061-2385080 None:intergenic 15.0%
!! ATATAGTGATATTCACTTAA+AGG + chr6_2:2379597-2379616 Msa0904600:five_prime_UTR 20.0%
!! AAACAAAAACAAAGATTGAA+GGG - chr6_2:2380066-2380085 None:intergenic 20.0%
!! AAAACAAAAACAAAGATTGA+AGG - chr6_2:2380067-2380086 None:intergenic 20.0%
!!! GAAAAAATGATCTTTTTAAG+AGG - chr6_2:2380108-2380127 None:intergenic 20.0%
!! TCATATCATACATTAACATA+AGG - chr6_2:2380130-2380149 None:intergenic 20.0%
!! ACACTAGTAATTTGAAAAAA+TGG - chr6_2:2380242-2380261 None:intergenic 20.0%
!! AGCAAAACAAAATACTAAAA+AGG - chr6_2:2380374-2380393 None:intergenic 20.0%
!! ACTTAGTTATCAACAAATTA+TGG - chr6_2:2381307-2381326 None:intergenic 20.0%
!! TATGAAAACGACTTATAATA+TGG - chr6_2:2381991-2382010 None:intergenic 20.0%
!!! AATAGTAAGTTTTTGTAATG+CGG + chr6_2:2382239-2382258 Msa0904600:intron 20.0%
!! TATTAACACAAACAATTACT+TGG - chr6_2:2383071-2383090 None:intergenic 20.0%
!! GTAAATGTTAAAATGATAAC+AGG + chr6_2:2383465-2383484 Msa0904600:intron 20.0%
!! AATGTACTTAAATTTCTTCT+AGG + chr6_2:2383611-2383630 Msa0904600:intron 20.0%
!! CTATATAACTTACTACAATA+CGG - chr6_2:2384435-2384454 None:intergenic 20.0%
!!! ATTATTGCTATTCTTAATGA+TGG + chr6_2:2384587-2384606 Msa0904600:CDS 20.0%
!! TACAATTATGACAATATCTA+AGG + chr6_2:2385122-2385141 Msa0904600:CDS 20.0%
!! AAATGAAAATGTTTCTTACA+GGG - chr6_2:2385281-2385300 None:intergenic 20.0%
!! AAAATGAAAATGTTTCTTAC+AGG - chr6_2:2385282-2385301 None:intergenic 20.0%
!!! GAAAATATCACATTTTACTT+TGG + chr6_2:2386106-2386125 Msa0904600:intron 20.0%
!! CAATGTTATAATATCTCATT+TGG + chr6_2:2386208-2386227 Msa0904600:intron 20.0%
!! TCCATTTATATAGATAATGT+GGG - chr6_2:2386863-2386882 None:intergenic 20.0%
!! ATCCATTTATATAGATAATG+TGG - chr6_2:2386864-2386883 None:intergenic 20.0%
! AAACGTGAAAAACAAAGAAA+TGG - chr6_2:2379732-2379751 None:intergenic 25.0%
! TAGAATTGTTTGAACTTTGA+AGG + chr6_2:2379778-2379797 Msa0904600:intron 25.0%
!!! GTCTAGTTTTTGTTTGATTA+TGG + chr6_2:2379880-2379899 Msa0904600:intron 25.0%
! ATGAAATGTATGTACTACAT+AGG - chr6_2:2380155-2380174 None:intergenic 25.0%
! GAAAAAATGGAATTGTTGAA+TGG - chr6_2:2380229-2380248 None:intergenic 25.0%
!!! TTGCTTTATTTCTTGTATTG+TGG + chr6_2:2380389-2380408 Msa0904600:intron 25.0%
!!! AAGCAAGTTTTTGAAGTTTT+TGG + chr6_2:2380423-2380442 Msa0904600:CDS 25.0%
!!! AGCAAGTTTTTGAAGTTTTT+GGG + chr6_2:2380424-2380443 Msa0904600:CDS 25.0%
!!! GAGAAAAGTAATTTTAATCG+TGG + chr6_2:2380562-2380581 Msa0904600:intron 25.0%
!!! TTAATCGTGGTTTTAAATTG+CGG + chr6_2:2380575-2380594 Msa0904600:intron 25.0%
! AAATTGTACAACCACAATTA+CGG - chr6_2:2380696-2380715 None:intergenic 25.0%
!!! CTTTTAGAAATAGTTGTAGA+AGG + chr6_2:2380768-2380787 Msa0904600:intron 25.0%
!! TTATCGTCGAATTGATAATA+AGG - chr6_2:2380896-2380915 None:intergenic 25.0%
! TATAAAAGCGACAGTTAAAA+AGG - chr6_2:2381007-2381026 None:intergenic 25.0%
! ATACCTTTATCTATATATGC+AGG + chr6_2:2381096-2381115 Msa0904600:intron 25.0%
! GATATAATTAGTGTTAAGCT+AGG + chr6_2:2381172-2381191 Msa0904600:CDS 25.0%
! ATAGAAAAACAAGATAGCAA+AGG - chr6_2:2381269-2381288 None:intergenic 25.0%
!!! GCTATCTTGTTTTTCTATAT+CGG + chr6_2:2381271-2381290 Msa0904600:CDS 25.0%
!!! TTTGTTGATAACTAAGTTTC+CGG + chr6_2:2381310-2381329 Msa0904600:intron 25.0%
!!! TTTGAAACTAAGTGTGTTTT+TGG + chr6_2:2381549-2381568 Msa0904600:intron 25.0%
! TAATTTCATGTGTGTATACA+TGG + chr6_2:2381590-2381609 Msa0904600:intron 25.0%
! CTATTGATATAAGTACTTGT+GGG - chr6_2:2382030-2382049 None:intergenic 25.0%
! TCTATTGATATAAGTACTTG+TGG - chr6_2:2382031-2382050 None:intergenic 25.0%
!! ACAAAAGGCATAAATGATAT+AGG - chr6_2:2382082-2382101 None:intergenic 25.0%
! AACATTAAAACACTTTCTGT+AGG - chr6_2:2382290-2382309 None:intergenic 25.0%
!!! AGATAAAAGTATACCTCTTT+TGG - chr6_2:2382436-2382455 None:intergenic 25.0%
!! ATCATTATATCCTATTTCTC+AGG + chr6_2:2383320-2383339 Msa0904600:intron 25.0%
!! TTTTCAATCAAATCATCAAC+TGG - chr6_2:2383749-2383768 None:intergenic 25.0%
! GAAAGGAAAAATATTATACC+AGG - chr6_2:2383797-2383816 None:intergenic 25.0%
! TACTAAGAATTTACAGAGAA+AGG - chr6_2:2383814-2383833 None:intergenic 25.0%
!!! TTTGAAATATTGATAATGCG+AGG - chr6_2:2384724-2384743 None:intergenic 25.0%
!! TACAACATTTTGTAATTCCA+GGG - chr6_2:2384752-2384771 None:intergenic 25.0%
!! TTACAACATTTTGTAATTCC+AGG - chr6_2:2384753-2384772 None:intergenic 25.0%
! TATAGTCTCTACAAATAGTA+AGG + chr6_2:2384870-2384889 Msa0904600:intron 25.0%
! ATAGTCTCTACAAATAGTAA+GGG + chr6_2:2384871-2384890 Msa0904600:intron 25.0%
! GAAATTGCAAAATATTGATC+TGG - chr6_2:2384906-2384925 None:intergenic 25.0%
!!! TAGAATATTGATAATGCTTG+AGG + chr6_2:2384937-2384956 Msa0904600:intron 25.0%
!!! AATTTAGTTCTTGCTATTGT+AGG - chr6_2:2384978-2384997 None:intergenic 25.0%
! TACAATAGCAAGAACTAAAT+TGG + chr6_2:2384977-2384996 Msa0904600:intron 25.0%
! ACAATAGCAAGAACTAAATT+GGG + chr6_2:2384978-2384997 Msa0904600:intron 25.0%
!! TGACATTAATTAGTCTGTAA+CGG - chr6_2:2385035-2385054 None:intergenic 25.0%
! TATGATTTCTTGAATATGTC+AGG + chr6_2:2385099-2385118 Msa0904600:intron 25.0%
!! AATAATTCTTGGTGGTTATT+TGG + chr6_2:2385206-2385225 Msa0904600:CDS 25.0%
!!! TGATGACAGTTATTTTCTTT+TGG + chr6_2:2385232-2385251 Msa0904600:CDS 25.0%
!!! GATGACAGTTATTTTCTTTT+GGG + chr6_2:2385233-2385252 Msa0904600:CDS 25.0%
!! AGTATAAAAACATGATAGTG+AGG - chr6_2:2385330-2385349 None:intergenic 25.0%
!! GTTTAATTTCTATACACAGT+CGG - chr6_2:2385406-2385425 None:intergenic 25.0%
! GTGAATATAACCATGTTTAT+CGG + chr6_2:2385770-2385789 Msa0904600:intron 25.0%
! ATCAGTTCATTGAAATTGAT+CGG - chr6_2:2385937-2385956 None:intergenic 25.0%
!!! TATGAGTTGATATATCATAC+AGG - chr6_2:2386059-2386078 None:intergenic 25.0%
! AATGTATTCTACGATTCATA+AGG + chr6_2:2386130-2386149 Msa0904600:intron 25.0%
!! TATTCCACTTGATTTTATCA+AGG + chr6_2:2386342-2386361 Msa0904600:intron 25.0%
! ATAATTCGATATGTATTGAG+TGG + chr6_2:2386367-2386386 Msa0904600:intron 25.0%
!! TATCGGTTAAATTAGAGTAA+CGG + chr6_2:2386438-2386457 Msa0904600:intron 25.0%
! AGACTATTTGAGAAAGTTTA+TGG + chr6_2:2386510-2386529 Msa0904600:intron 25.0%
!!! TTTTTCAGATTGCTTTTACT+AGG + chr6_2:2386658-2386677 Msa0904600:intron 25.0%
!! TTTACTAGGAAGAAAGATTT+TGG + chr6_2:2386672-2386691 Msa0904600:intron 25.0%
! TCCCACATTATCTATATAAA+TGG + chr6_2:2386859-2386878 Msa0904600:intron 25.0%
! TAGAAACAAATAAGCACTTA+AGG - chr6_2:2386892-2386911 None:intergenic 25.0%
! ACAAAGATGTTAACATAAGT+TGG - chr6_2:2386939-2386958 None:intergenic 25.0%
! TTTGAAAGAAGCTGTTGATT+TGG + chr6_2:2379692-2379711 Msa0904600:CDS 30.0%
! GATTACTTGAATTTGTTTGC+AGG + chr6_2:2379915-2379934 Msa0904600:intron 30.0%
!!! TGAAGTTTTTGGGATTTATG+TGG + chr6_2:2380434-2380453 Msa0904600:CDS 30.0%
TAGCAATATAAAGGATTTCG+AGG - chr6_2:2380666-2380685 None:intergenic 30.0%
GGTAGCAAATAGCAATATAA+AGG - chr6_2:2380675-2380694 None:intergenic 30.0%
!!! AGTTGTAGAAGGTTCTTTTT+TGG + chr6_2:2380779-2380798 Msa0904600:intron 30.0%
GAACCTGCATATATAGATAA+AGG - chr6_2:2381102-2381121 None:intergenic 30.0%
TTAACACTAATTATATCGCC+TGG - chr6_2:2381169-2381188 None:intergenic 30.0%
! ATAACTAAGTTTCCGGTTTT+CGG + chr6_2:2381317-2381336 Msa0904600:intron 30.0%
ATTGATACTTAGCATTACGT+TGG + chr6_2:2381640-2381659 Msa0904600:intron 30.0%
TTGATACTTAGCATTACGTT+GGG + chr6_2:2381641-2381660 Msa0904600:intron 30.0%
AAAAGTTCCCAATTGAAGTT+AGG - chr6_2:2381681-2381700 None:intergenic 30.0%
TTGTATATGTTCAATTGCTG+TGG + chr6_2:2381699-2381718 Msa0904600:CDS 30.0%
TGTATATGTTCAATTGCTGT+GGG + chr6_2:2381700-2381719 Msa0904600:CDS 30.0%
!!! GATATTTTCGGTGTTGAATT+GGG - chr6_2:2381753-2381772 None:intergenic 30.0%
ATTGTAACTGACAAAACTGT+AGG - chr6_2:2381832-2381851 None:intergenic 30.0%
!! TACAGTTTTGTCAGTTACAA+TGG + chr6_2:2381831-2381850 Msa0904600:CDS 30.0%
TCATCAATTAGACGATAACT+TGG + chr6_2:2381929-2381948 Msa0904600:intron 30.0%
TGTTGACAAGAATCTTATTG+AGG + chr6_2:2382211-2382230 Msa0904600:intron 30.0%
CTATAGATGCTGCTATTATA+GGG + chr6_2:2382398-2382417 Msa0904600:CDS 30.0%
!! GCAAGTTTTATGTGATGATT+TGG - chr6_2:2382471-2382490 None:intergenic 30.0%
! CTATAGTGTTTTGTGTCAAT+AGG + chr6_2:2382509-2382528 Msa0904600:intron 30.0%
ACACCTTAAATATGAAGTGT+CGG - chr6_2:2382628-2382647 None:intergenic 30.0%
CTTGTATTTGTCCGAAAATT+AGG + chr6_2:2382907-2382926 Msa0904600:intron 30.0%
ATATGAAACATATACCTGGT+AGG - chr6_2:2383237-2383256 None:intergenic 30.0%
! TGAGCAAATTCAAGTTACAT+TGG + chr6_2:2383277-2383296 Msa0904600:intron 30.0%
! ATAAGTAGGGCATTAAATCT+TGG + chr6_2:2383441-2383460 Msa0904600:intron 30.0%
TTAATATGTTTCGCACTACT+CGG + chr6_2:2383564-2383583 Msa0904600:intron 30.0%
GATTTGATTGAAAAAGCTGA+TGG + chr6_2:2383755-2383774 Msa0904600:CDS 30.0%
TATTATACCAGGAAAAACAC+CGG - chr6_2:2383786-2383805 None:intergenic 30.0%
TCCACACATCAATATAATAG+CGG + chr6_2:2383836-2383855 Msa0904600:intron 30.0%
AAGTACACTTTACGTTTACA+AGG + chr6_2:2383958-2383977 Msa0904600:intron 30.0%
CTGTGTAATTCTTCATTCTT+TGG - chr6_2:2384301-2384320 None:intergenic 30.0%
TTGATGTTAGAACTGAAAGT+AGG - chr6_2:2384328-2384347 None:intergenic 30.0%
! CTTTCAGTTCTAACATCAAA+TGG + chr6_2:2384329-2384348 Msa0904600:intron 30.0%
! AGAAATTTTATGTGACAGCT+TGG + chr6_2:2384509-2384528 Msa0904600:intron 30.0%
!! ATTTGATTTTCCACCATTCA+TGG + chr6_2:2384559-2384578 Msa0904600:CDS 30.0%
ATGACTTCACTAGTAAAAAG+GGG - chr6_2:2384648-2384667 None:intergenic 30.0%
CATGACTTCACTAGTAAAAA+GGG - chr6_2:2384649-2384668 None:intergenic 30.0%
CAATATTTCAAAATGATCCC+TGG + chr6_2:2384732-2384751 Msa0904600:intron 30.0%
ATGACATAAGTTTGTGATGT+CGG - chr6_2:2384847-2384866 None:intergenic 30.0%
TTTACCACTGGAATAATTCT+TGG + chr6_2:2385195-2385214 Msa0904600:CDS 30.0%
! TGTAATTTTCAGAGCACATT+TGG + chr6_2:2385527-2385546 Msa0904600:intron 30.0%
! GACTAATTGTACTAACTTGT+AGG - chr6_2:2385613-2385632 None:intergenic 30.0%
ACAAGTTAGTACAATTAGTC+AGG + chr6_2:2385613-2385632 Msa0904600:CDS 30.0%
AGATTCAACATAATGATGAG+TGG - chr6_2:2385895-2385914 None:intergenic 30.0%
ATGACCTTGATAAAATCAAG+TGG - chr6_2:2386349-2386368 None:intergenic 30.0%
!!! GGATCTTGTTTTTGAACAAA+GGG + chr6_2:2386399-2386418 Msa0904600:intron 30.0%
TCTAATTTAACCGATAGAGA+AGG - chr6_2:2386434-2386453 None:intergenic 30.0%
!! ATAACGCTCAATTAACTTGT+TGG + chr6_2:2386608-2386627 Msa0904600:intron 30.0%
!! TAGGAAGAAAGATTTTGGAA+AGG + chr6_2:2386677-2386696 Msa0904600:intron 30.0%
TTATACAGAGCTTAATCAGA+TGG + chr6_2:2386788-2386807 Msa0904600:CDS 30.0%
! ATAGCCAAAACCCAAGATTT+TGG - chr6_2:2379639-2379658 None:intergenic 35.0%
!!! ATCTTGGGTTTTGGCTATTA+TGG + chr6_2:2379641-2379660 Msa0904600:exon 35.0%
TTCTTTCAAAACAGCATGCA+TGG - chr6_2:2379682-2379701 None:intergenic 35.0%
! GTTTGAAACACTTCCTCAAT+TGG - chr6_2:2379949-2379968 None:intergenic 35.0%
!! AGGAAGTGTTTCAAACTTTG+AGG + chr6_2:2379953-2379972 Msa0904600:CDS 35.0%
!! ACTTTGAGGTGTGATTCAAA+TGG + chr6_2:2379967-2379986 Msa0904600:CDS 35.0%
! TTCAAATGGACTCACAACAA+TGG + chr6_2:2379981-2380000 Msa0904600:CDS 35.0%
CTGCTGGAAATCTTTACATT+GGG + chr6_2:2380601-2380620 Msa0904600:intron 35.0%
TCTTTACATTGGGTGAAGTA+TGG + chr6_2:2380611-2380630 Msa0904600:intron 35.0%
!!! GATTTTGATTTCGAAGTGTG+TGG + chr6_2:2380724-2380743 Msa0904600:intron 35.0%
! TTTAGAATAAACCACCCGAT+TGG + chr6_2:2380844-2380863 Msa0904600:intron 35.0%
!! GAGAGTAATACCTTAGCTTT+TGG - chr6_2:2380978-2380997 None:intergenic 35.0%
TGCACTTGATCAATCTTCAA+CGG - chr6_2:2381238-2381257 None:intergenic 35.0%
!!! GTGTGTTTTTGGTTCTACAA+CGG + chr6_2:2381560-2381579 Msa0904600:intron 35.0%
TTGAAGTTAGGACCTGTTTA+AGG - chr6_2:2381669-2381688 None:intergenic 35.0%
AAACAGGTCCTAACTTCAAT+TGG + chr6_2:2381670-2381689 Msa0904600:intron 35.0%
AACAGGTCCTAACTTCAATT+GGG + chr6_2:2381671-2381690 Msa0904600:intron 35.0%
!!! CGATATTTTCGGTGTTGAAT+TGG - chr6_2:2381754-2381773 None:intergenic 35.0%
ACAAGTAGATTATCAATCCC+TGG - chr6_2:2381778-2381797 None:intergenic 35.0%
AATCTACTTGTGCTTCTCAT+TGG + chr6_2:2381787-2381806 Msa0904600:CDS 35.0%
TTGTCAGTTACAATGGCAAT+CGG + chr6_2:2381838-2381857 Msa0904600:CDS 35.0%
! ATGCCTTTTGTGATTATTGC+AGG + chr6_2:2382091-2382110 Msa0904600:intron 35.0%
! TGCCTTTTGTGATTATTGCA+GGG + chr6_2:2382092-2382111 Msa0904600:intron 35.0%
AATGACAGCAATAGAAGAGA+TGG + chr6_2:2382130-2382149 Msa0904600:intron 35.0%
! AGTAAGTTTTTGTAATGCGG+TGG + chr6_2:2382242-2382261 Msa0904600:intron 35.0%
GCTATAGATGCTGCTATTAT+AGG + chr6_2:2382397-2382416 Msa0904600:CDS 35.0%
CAACAAACCAAATGAGGAAA+GGG - chr6_2:2382595-2382614 None:intergenic 35.0%
ACAACAAACCAAATGAGGAA+AGG - chr6_2:2382596-2382615 None:intergenic 35.0%
GCTTTACAACAAACCAAATG+AGG - chr6_2:2382601-2382620 None:intergenic 35.0%
ATTTGTCCGAAAATTAGGCA+AGG + chr6_2:2382912-2382931 Msa0904600:intron 35.0%
TTTGTCCGAAAATTAGGCAA+GGG + chr6_2:2382913-2382932 Msa0904600:intron 35.0%
GAATCACTTTCATTGTCAAG+TGG - chr6_2:2383097-2383116 None:intergenic 35.0%
GAGCATATGAAACATATACC+TGG - chr6_2:2383241-2383260 None:intergenic 35.0%
TTGTGTCCTTTGCATGTTAT+TGG + chr6_2:2383489-2383508 Msa0904600:intron 35.0%
TGTGTCCTTTGCATGTTATT+GGG + chr6_2:2383490-2383509 Msa0904600:intron 35.0%
GCGCTTATAGAATAAGCATT+TGG + chr6_2:2383539-2383558 Msa0904600:intron 35.0%
CTATCAATAGCGAAAGAAAC+AGG + chr6_2:2383641-2383660 Msa0904600:CDS 35.0%
!! TACCCTTCATCAGCTTTATT+AGG + chr6_2:2383692-2383711 Msa0904600:CDS 35.0%
TCAAATCATCAACTGGTAAG+AGG - chr6_2:2383742-2383761 None:intergenic 35.0%
ACGATCTCATATTTGTGTTC+TGG - chr6_2:2384080-2384099 None:intergenic 35.0%
AAACACATATGTGGAATGAC+CGG + chr6_2:2384119-2384138 Msa0904600:CDS 35.0%
ATATCTGCTTTCTTAAGAGC+AGG - chr6_2:2384164-2384183 None:intergenic 35.0%
GCTCTTAAGAAAGCAGATAT+TGG + chr6_2:2384164-2384183 Msa0904600:CDS 35.0%
! TGGTTCTGTTAGAACAATGT+CGG - chr6_2:2384231-2384250 None:intergenic 35.0%
ATAATCAGTACCATGAATGG+TGG - chr6_2:2384572-2384591 None:intergenic 35.0%
GCAATAATCAGTACCATGAA+TGG - chr6_2:2384575-2384594 None:intergenic 35.0%
CCATGACTTCACTAGTAAAA+AGG - chr6_2:2384650-2384669 None:intergenic 35.0%
! CCTTTTTACTAGTGAAGTCA+TGG + chr6_2:2384647-2384666 Msa0904600:intron 35.0%
ATGGCTGTATATATCGTAGT+TGG + chr6_2:2384666-2384685 Msa0904600:intron 35.0%
TAGTTGGTCCTTGAAATTGT+AGG + chr6_2:2384682-2384701 Msa0904600:intron 35.0%
!! ATATTGATAATGCGAGGACT+AGG - chr6_2:2384718-2384737 None:intergenic 35.0%
GTAAAGTTTGTCTCTCAATC+TGG + chr6_2:2384769-2384788 Msa0904600:intron 35.0%
ACTCGAAGTCATGGATATTT+AGG + chr6_2:2385006-2385025 Msa0904600:intron 35.0%
AGTATCAAGTCTTCAGAAAG+AGG + chr6_2:2385550-2385569 Msa0904600:CDS 35.0%
AAGTCTTCAGAAAGAGGATA+GGG + chr6_2:2385556-2385575 Msa0904600:CDS 35.0%
AACTTGTAGGTATATTGCTG+AGG - chr6_2:2385600-2385619 None:intergenic 35.0%
TGACCGCGTTACAAATATAA+GGG - chr6_2:2385639-2385658 None:intergenic 35.0%
TTATATTTGTAACGCGGTCA+CGG + chr6_2:2385639-2385658 Msa0904600:CDS 35.0%
CGATTCATAAGGTTCGATTA+TGG + chr6_2:2386141-2386160 Msa0904600:intron 35.0%
!! TGATTGCTGTTTATGCAAAC+TGG + chr6_2:2386248-2386267 Msa0904600:intron 35.0%
!!! GGGATCTTGTTTTTGAACAA+AGG + chr6_2:2386398-2386417 Msa0904600:intron 35.0%
AGGAAGAACGTGAACTTAAA+TGG + chr6_2:2386697-2386716 Msa0904600:CDS 35.0%
GGAAGAACGTGAACTTAAAT+GGG + chr6_2:2386698-2386717 Msa0904600:CDS 35.0%
GGAAGCAATTATTCACTCTT+TGG - chr6_2:2386918-2386937 None:intergenic 35.0%
ACTTTGCAGCACCAAAATCT+TGG + chr6_2:2379625-2379644 Msa0904600:five_prime_UTR 40.0%
CTTTGCAGCACCAAAATCTT+GGG + chr6_2:2379626-2379645 Msa0904600:five_prime_UTR 40.0%
! AGCACCAAAATCTTGGGTTT+TGG + chr6_2:2379632-2379651 Msa0904600:five_prime_UTR 40.0%
CTTTGGTCACAACAAACTTG+AGG + chr6_2:2380026-2380045 Msa0904600:CDS 40.0%
CAACAAACTTGAGGAGAAAC+AGG + chr6_2:2380035-2380054 Msa0904600:CDS 40.0%
!! TTGAGCATTGACACAACTAC+CGG - chr6_2:2380305-2380324 None:intergenic 40.0%
! TCTTGTATTGTGGCTTTTGC+AGG + chr6_2:2380399-2380418 Msa0904600:intron 40.0%
TTATGTGGAATCCTCTCTCA+TGG + chr6_2:2380449-2380468 Msa0904600:CDS 40.0%
TATGTGGAATCCTCTCTCAT+GGG + chr6_2:2380450-2380469 Msa0904600:CDS 40.0%
AGCAATCATGGCTATTGCTT+TGG + chr6_2:2380486-2380505 Msa0904600:CDS 40.0%
! TTTTAAATTGCGGTTGCTGC+TGG + chr6_2:2380585-2380604 Msa0904600:intron 40.0%
GCTGCTGGAAATCTTTACAT+TGG + chr6_2:2380600-2380619 Msa0904600:intron 40.0%
TAACAACGTCGCAATTGCAT+TGG - chr6_2:2380637-2380656 None:intergenic 40.0%
! GCTATTTGCTACCGTAATTG+TGG + chr6_2:2380682-2380701 Msa0904600:intron 40.0%
AGTGTGTGGATGCACATTAT+AGG + chr6_2:2380738-2380757 Msa0904600:intron 40.0%
ACCAACAAAGTCTTGCCAAT+CGG - chr6_2:2380862-2380881 None:intergenic 40.0%
TTCGACGATAAGTTTCATCG+AGG + chr6_2:2380905-2380924 Msa0904600:intron 40.0%
TTCATCGAGGAAAACAATGC+TGG + chr6_2:2380918-2380937 Msa0904600:intron 40.0%
TATATGCAGGTTCTTCGAGA+TGG + chr6_2:2381109-2381128 Msa0904600:intron 40.0%
ATATGCAGGTTCTTCGAGAT+GGG + chr6_2:2381110-2381129 Msa0904600:intron 40.0%
CCTGAATAAACACTGTCACT+GGG - chr6_2:2381391-2381410 None:intergenic 40.0%
! GAAGCAGTTGTTATTGCAAC+CGG + chr6_2:2381436-2381455 Msa0904600:CDS 40.0%
AGTTCATACCTTCTTTGGCA+AGG + chr6_2:2381459-2381478 Msa0904600:CDS 40.0%
! AAAATGCCCGACTTGATTTG+TGG - chr6_2:2381503-2381522 None:intergenic 40.0%
TTACGTTGGGTTCCTTAAAC+AGG + chr6_2:2381654-2381673 Msa0904600:intron 40.0%
AACACCGAAAATATCGTCCA+GGG + chr6_2:2381758-2381777 Msa0904600:CDS 40.0%
! CAATCCCTGGACGATATTTT+CGG - chr6_2:2381765-2381784 None:intergenic 40.0%
AAAACTGTAGGCATGGCAAT+AGG - chr6_2:2381820-2381839 None:intergenic 40.0%
AACTGACAAAACTGTAGGCA+TGG - chr6_2:2381827-2381846 None:intergenic 40.0%
CACCCTGCAATAATCACAAA+AGG - chr6_2:2382097-2382116 None:intergenic 40.0%
GTATTGTGCAGTGACAAAAC+TGG + chr6_2:2382164-2382183 Msa0904600:intron 40.0%
TAGCAGCATCTATAGCATCT+TGG - chr6_2:2382393-2382412 None:intergenic 40.0%
AAACCAAATGAGGAAAGGGA+AGG - chr6_2:2382591-2382610 None:intergenic 40.0%
!! CCTTAAATATGAAGTGTCGG+TGG - chr6_2:2382625-2382644 None:intergenic 40.0%
CCACCGACACTTCATATTTA+AGG + chr6_2:2382622-2382641 Msa0904600:intron 40.0%
AAAATGCATCGTGTCAGCAA+AGG + chr6_2:2383016-2383035 Msa0904600:CDS 40.0%
GATAAGAAAGATACCTGCTC+CGG - chr6_2:2383046-2383065 None:intergenic 40.0%
TCAGGAACTTCCTGAGAAAT+AGG - chr6_2:2383333-2383352 None:intergenic 40.0%
ATTTCTCAGGAAGTTCCTGA+TGG + chr6_2:2383333-2383352 Msa0904600:intron 40.0%
TGGCTTTCTTTCTTTCCATC+AGG - chr6_2:2383351-2383370 None:intergenic 40.0%
GATGGAAAGAAAGAAAGCCA+AGG + chr6_2:2383351-2383370 Msa0904600:CDS 40.0%
ATAGTGCAGAGACGATAAGT+AGG + chr6_2:2383427-2383446 Msa0904600:intron 40.0%
TAGTGCAGAGACGATAAGTA+GGG + chr6_2:2383428-2383447 Msa0904600:intron 40.0%
ACATGCCCAATAACATGCAA+AGG - chr6_2:2383498-2383517 None:intergenic 40.0%
TGCATGTTATTGGGCATGTT+TGG + chr6_2:2383499-2383518 Msa0904600:intron 40.0%
TGTTAGTTCCCATTCCTAGA+CGG - chr6_2:2383670-2383689 None:intergenic 40.0%
GGCCTAATAAAGCTGATGAA+GGG - chr6_2:2383697-2383716 None:intergenic 40.0%
TGGCCTAATAAAGCTGATGA+AGG - chr6_2:2383698-2383717 None:intergenic 40.0%
!! AGCTTTATTAGGCCAGAACA+AGG + chr6_2:2383703-2383722 Msa0904600:CDS 40.0%
CAATTCCTTCATCCTTGTTC+TGG - chr6_2:2383718-2383737 None:intergenic 40.0%
CAGAACAAGGATGAAGGAAT+TGG + chr6_2:2383716-2383735 Msa0904600:CDS 40.0%
!! GAAAAAGCTGATGGATTTGC+CGG + chr6_2:2383764-2383783 Msa0904600:CDS 40.0%
GCCGCTATTATATTGATGTG+TGG - chr6_2:2383840-2383859 None:intergenic 40.0%
AACTCGTCATGTCAAACAAG+CGG - chr6_2:2384049-2384068 None:intergenic 40.0%
CAAGCTAGGAAACACATATG+TGG + chr6_2:2384110-2384129 Msa0904600:CDS 40.0%
AGCATCATTAACACCATCAC+CGG - chr6_2:2384141-2384160 None:intergenic 40.0%
GACATTGTTCTAACAGAACC+AGG + chr6_2:2384230-2384249 Msa0904600:CDS 40.0%
CTAATGATAACACTGAGACC+TGG - chr6_2:2384251-2384270 None:intergenic 40.0%
!! TCTTTGGAATATTGCTCGAC+TGG - chr6_2:2384285-2384304 None:intergenic 40.0%
ACAGCTTGGTTTCATGTTAC+TGG + chr6_2:2384523-2384542 Msa0904600:intron 40.0%
GATACGGTCCTACAATTTCA+AGG - chr6_2:2384693-2384712 None:intergenic 40.0%
TGGGAATTTACTCGAAGTCA+TGG + chr6_2:2384997-2385016 Msa0904600:intron 40.0%
ACCACTGGAATAATTCTTGG+TGG + chr6_2:2385198-2385217 Msa0904600:CDS 40.0%
ACCACCAAGAATTATTCCAG+TGG - chr6_2:2385202-2385221 None:intergenic 40.0%
CAAGTCTTCAGAAAGAGGAT+AGG + chr6_2:2385555-2385574 Msa0904600:CDS 40.0%
AGGCCCTTATATTTGTAACG+CGG + chr6_2:2385633-2385652 Msa0904600:CDS 40.0%
GTGACCGCGTTACAAATATA+AGG - chr6_2:2385640-2385659 None:intergenic 40.0%
! AGCTTTTGTCATTGCTCAAC+TGG + chr6_2:2385703-2385722 Msa0904600:CDS 40.0%
TTGCACGATACCGATAAACA+TGG - chr6_2:2385783-2385802 None:intergenic 40.0%
! TGGAGTTTTGCTGCAATTGA+AGG + chr6_2:2386268-2386287 Msa0904600:intron 40.0%
! GGAGTTTTGCTGCAATTGAA+GGG + chr6_2:2386269-2386288 Msa0904600:intron 40.0%
TTTGCTGCAATTGAAGGGAT+TGG + chr6_2:2386274-2386293 Msa0904600:intron 40.0%
TGCAATTGAAGGGATTGGAT+GGG + chr6_2:2386279-2386298 Msa0904600:intron 40.0%
TTCGATATGTATTGAGTGGC+CGG + chr6_2:2386371-2386390 Msa0904600:intron 40.0%
GTACGTGTTTCCTTCTCTAT+CGG + chr6_2:2386421-2386440 Msa0904600:intron 40.0%
!! GAGTAACGGCTTGTTGAATT+AGG + chr6_2:2386452-2386471 Msa0904600:intron 40.0%
TGAAGAGGCTAAAAAACGAG+CGG + chr6_2:2386812-2386831 Msa0904600:CDS 40.0%
AAAAACGAGCGGAAATTGCA+AGG + chr6_2:2386823-2386842 Msa0904600:CDS 40.0%
!! TTCTAACCACTGACTCAACA+TGG - chr6_2:2387001-2387020 None:intergenic 40.0%
TGAGTCAGTGGTTAGAATGA+AGG + chr6_2:2387004-2387023 Msa0904600:CDS 40.0%
GAGTCAGTGGTTAGAATGAA+GGG + chr6_2:2387005-2387024 Msa0904600:CDS 40.0%
GCAGGAAAATGTGCCAATTG+AGG + chr6_2:2379933-2379952 Msa0904600:intron 45.0%
! CAAGAGAGGTTGGCTATCTT+TGG + chr6_2:2380009-2380028 Msa0904600:CDS 45.0%
ATGGCTATTGCTTTGGCCAA+TGG + chr6_2:2380493-2380512 Msa0904600:CDS 45.0%
AAAGCGACTTACTCCTCCAT+TGG - chr6_2:2380512-2380531 None:intergenic 45.0%
CCAACAAAGTCTTGCCAATC+GGG - chr6_2:2380861-2380880 None:intergenic 45.0%
GATGCTAGCATTCTTGTTCC+AGG + chr6_2:2381148-2381167 Msa0904600:intron 45.0%
GCTAGGTGATATTATCCCTG+CGG + chr6_2:2381189-2381208 Msa0904600:CDS 45.0%
! CTAAGTTTCCGGTTTTCGGA+CGG + chr6_2:2381321-2381340 Msa0904600:intron 45.0%
ACTTACAGGTGAGTCTCTTC+CGG + chr6_2:2381355-2381374 Msa0904600:intron 45.0%
CCCAGTGACAGTGTTTATTC+AGG + chr6_2:2381388-2381407 Msa0904600:intron 45.0%
GCCTGAATAAACACTGTCAC+TGG - chr6_2:2381392-2381411 None:intergenic 45.0%
TTCAGGCTCTACATGCAAAC+AGG + chr6_2:2381405-2381424 Msa0904600:intron 45.0%
TCAGGCTCTACATGCAAACA+GGG + chr6_2:2381406-2381425 Msa0904600:intron 45.0%
ACCGGAGTTCATACCTTCTT+TGG + chr6_2:2381454-2381473 Msa0904600:CDS 45.0%
! GCCAAAGAAGGTATGAACTC+CGG - chr6_2:2381458-2381477 None:intergenic 45.0%
! GTCGACTCCACAAATCAAGT+CGG + chr6_2:2381493-2381512 Msa0904600:CDS 45.0%
TCGACTCCACAAATCAAGTC+GGG + chr6_2:2381494-2381513 Msa0904600:CDS 45.0%
CAACACCGAAAATATCGTCC+AGG + chr6_2:2381757-2381776 Msa0904600:CDS 45.0%
CTACTTGTGCTTCTCATTGG+AGG + chr6_2:2381790-2381809 Msa0904600:CDS 45.0%
! CGTTTTCATAAGTTCTCCCG+AGG + chr6_2:2382001-2382020 Msa0904600:intron 45.0%
TAAGTACTTGTGGGACTCCT+CGG - chr6_2:2382021-2382040 None:intergenic 45.0%
GACAGCAATAGAAGAGATGG+CGG + chr6_2:2382133-2382152 Msa0904600:intron 45.0%
ACAGCAATAGAAGAGATGGC+GGG + chr6_2:2382134-2382153 Msa0904600:intron 45.0%
!! AATAGAAGAGATGGCGGGTA+TGG + chr6_2:2382139-2382158 Msa0904600:intron 45.0%
!! AGCATCTTGGTTTTCCACTC+TGG - chr6_2:2382380-2382399 None:intergenic 45.0%
GCTGCTATTATAGGGATGCT+AGG + chr6_2:2382406-2382425 Msa0904600:CDS 45.0%
GATGCTAGGTGATCCAAAAG+AGG + chr6_2:2382420-2382439 Msa0904600:CDS 45.0%
TAGCCTTCCCTTTCCTCATT+TGG + chr6_2:2382585-2382604 Msa0904600:intron 45.0%
! ACCAGCCCTTGCCTAATTTT+CGG - chr6_2:2382921-2382940 None:intergenic 45.0%
AGGGAAGAAAGTGAACCTCT+TGG - chr6_2:2382946-2382965 None:intergenic 45.0%
CGCTTGTCAGTAGGATTGAA+GGG - chr6_2:2382965-2382984 None:intergenic 45.0%
CCTTCAATCCTACTGACAAG+CGG + chr6_2:2382963-2382982 Msa0904600:CDS 45.0%
ATCGATAAATTTGCCGAGCG+AGG + chr6_2:2383191-2383210 Msa0904600:CDS 45.0%
TCGATAAATTTGCCGAGCGA+GGG + chr6_2:2383192-2383211 Msa0904600:CDS 45.0%
TGTCTAGGTGGGTCGAATAA+AGG - chr6_2:2383405-2383424 None:intergenic 45.0%
CTGCACTATCATGTCTAGGT+GGG - chr6_2:2383416-2383435 None:intergenic 45.0%
TCTGCACTATCATGTCTAGG+TGG - chr6_2:2383417-2383436 None:intergenic 45.0%
GTCTCTGCACTATCATGTCT+AGG - chr6_2:2383420-2383439 None:intergenic 45.0%
TTAGGCCAGAACAAGGATGA+AGG + chr6_2:2383710-2383729 Msa0904600:CDS 45.0%
TCGTGAAACGTTTGCAAGCT+AGG + chr6_2:2384096-2384115 Msa0904600:CDS 45.0%
ATATGTGGAATGACCGGTGA+TGG + chr6_2:2384125-2384144 Msa0904600:CDS 45.0%
!! ATGCGAGGACTAGGTTGATA+CGG - chr6_2:2384709-2384728 None:intergenic 45.0%
CAGCTATCTGGATATGGAGA+TGG - chr6_2:2385159-2385178 None:intergenic 45.0%
CATCTCCATATCCAGATAGC+TGG + chr6_2:2385157-2385176 Msa0904600:CDS 45.0%
AGCTTCCAGCTATCTGGATA+TGG - chr6_2:2385165-2385184 None:intergenic 45.0%
ATATCCAGATAGCTGGAAGC+TGG + chr6_2:2385164-2385183 Msa0904600:CDS 45.0%
CTGGCAGAGATATTTACCAC+TGG + chr6_2:2385183-2385202 Msa0904600:CDS 45.0%
GCTGCTACAAGTAACAAACC+CGG - chr6_2:2385686-2385705 None:intergenic 45.0%
ATTGCTCAACTGGTGAGTAC+AGG + chr6_2:2385713-2385732 Msa0904600:intron 45.0%
CTGCAATTGAAGGGATTGGA+TGG + chr6_2:2386278-2386297 Msa0904600:intron 45.0%
GCAATTGAAGGGATTGGATG+GGG + chr6_2:2386280-2386299 Msa0904600:intron 45.0%
TCGATATGTATTGAGTGGCC+GGG + chr6_2:2386372-2386391 Msa0904600:intron 45.0%
CAAAAACAAGATCCCAAGCC+CGG - chr6_2:2386393-2386412 None:intergenic 45.0%
!! CGCTCAATTAACTTGTTGGC+TGG + chr6_2:2386612-2386631 Msa0904600:intron 45.0%
CATGCGCAAAGAACACTTCA+TGG + chr6_2:2386723-2386742 Msa0904600:CDS 45.0%
GCTTAATCAGATGGCTGAAG+AGG + chr6_2:2386797-2386816 Msa0904600:CDS 45.0%
TAGAGAGTTGCACACACTCA+AGG + chr6_2:2386974-2386993 Msa0904600:CDS 45.0%
AGAGAGTTGCACACACTCAA+GGG + chr6_2:2386975-2386994 Msa0904600:CDS 45.0%
!!! TTTTTTTTTTTTTATGTTTT+TGG + chr6_2:2379831-2379850 Msa0904600:intron 5.0%
CAACAATGGCTGCTCAAGAG+AGG + chr6_2:2379995-2380014 Msa0904600:CDS 50.0%
AATGGCTGCTCAAGAGAGGT+TGG + chr6_2:2379999-2380018 Msa0904600:CDS 50.0%
!! GTCTGATGTCCGACTCGTTT+TGG + chr6_2:2380186-2380205 Msa0904600:intron 50.0%
GCGTTAGTGCCAAAACGAGT+CGG - chr6_2:2380198-2380217 None:intergenic 50.0%
GTCTGTGTCAGTGTCATGTC+CGG + chr6_2:2380283-2380302 Msa0904600:intron 50.0%
GAATCCTCTCTCATGGGTGA+TGG + chr6_2:2380456-2380475 Msa0904600:CDS 50.0%
GATGGAAGCTGCAGCAATCA+TGG + chr6_2:2380474-2380493 Msa0904600:CDS 50.0%
GCTATTGCTTTGGCCAATGG+AGG + chr6_2:2380496-2380515 Msa0904600:CDS 50.0%
ACAAAGTCTTGCCAATCGGG+TGG - chr6_2:2380858-2380877 None:intergenic 50.0%
CCCGATTGGCAAGACTTTGT+TGG + chr6_2:2380858-2380877 Msa0904600:CDS 50.0%
TCGCTTAGCGCCAAAAGCTA+AGG + chr6_2:2380965-2380984 Msa0904600:intron 50.0%
AGGTTCTTCGAGATGGGAGA+TGG + chr6_2:2381116-2381135 Msa0904600:intron 50.0%
GGTTCTTCGAGATGGGAGAT+GGG + chr6_2:2381117-2381136 Msa0904600:intron 50.0%
GACTACAACCGTCCGAAAAC+CGG - chr6_2:2381332-2381351 None:intergenic 50.0%
CGGTTGTAGTCTGCACTTAC+AGG + chr6_2:2381341-2381360 Msa0904600:intron 50.0%
TGAGTCTCTTCCGGTCACAA+AGG + chr6_2:2381364-2381383 Msa0904600:intron 50.0%
ATGAGCAGCCTTGCCAAAGA+AGG - chr6_2:2381470-2381489 None:intergenic 50.0%
! TCAAGTCGGGCATTTTCAGC+AGG + chr6_2:2381507-2381526 Msa0904600:CDS 50.0%
TGTCTACCTGCTGAGCTAAG+CGG - chr6_2:2381870-2381889 None:intergenic 50.0%
AAGTACTTGTGGGACTCCTC+GGG - chr6_2:2382020-2382039 None:intergenic 50.0%
CGCAGATACCGTTGTTCTCA+TGG + chr6_2:2382342-2382361 Msa0904600:CDS 50.0%
AGGAAAGGGAAGGCTAGAGT+AGG - chr6_2:2382581-2382600 None:intergenic 50.0%
TCCGAAAATTAGGCAAGGGC+TGG + chr6_2:2382917-2382936 Msa0904600:intron 50.0%
CCGCTTGTCAGTAGGATTGA+AGG - chr6_2:2382966-2382985 None:intergenic 50.0%
AAGAAAGCCAAGGAAGACCC+TGG + chr6_2:2383361-2383380 Msa0904600:CDS 50.0%
TAAACTGCCAGGGTCTTCCT+TGG - chr6_2:2383371-2383390 None:intergenic 50.0%
GGAAGACCCTGGCAGTTTAT+CGG + chr6_2:2383372-2383391 Msa0904600:CDS 50.0%
GAAGACCCTGGCAGTTTATC+GGG + chr6_2:2383373-2383392 Msa0904600:CDS 50.0%
ATGAGCCCGATAAACTGCCA+GGG - chr6_2:2383381-2383400 None:intergenic 50.0%
AAAGAAACAGGACGCCGTCT+AGG + chr6_2:2383653-2383672 Msa0904600:CDS 50.0%
! GGATTTGCCGGTGTTTTTCC+TGG + chr6_2:2383776-2383795 Msa0904600:CDS 50.0%
! TATTGCTCGACTGGTCAGCA+CGG - chr6_2:2384276-2384295 None:intergenic 50.0%
!! CTGGTCTTTTGTTGAGCGAC+CGG + chr6_2:2385664-2385683 Msa0904600:CDS 50.0%
! TGGTCTTTTGTTGAGCGACC+GGG + chr6_2:2385665-2385684 Msa0904600:CDS 50.0%
TTGAAGGGATTGGATGGGGT+TGG + chr6_2:2386284-2386303 Msa0904600:intron 50.0%
TGAAGGGATTGGATGGGGTT+GGG + chr6_2:2386285-2386304 Msa0904600:intron 50.0%
TGAACATCTTGGTCTCTGGC+GGG - chr6_2:2386755-2386774 None:intergenic 50.0%
CTGAACATCTTGGTCTCTGG+CGG - chr6_2:2386756-2386775 None:intergenic 50.0%
TCGCTGAACATCTTGGTCTC+TGG - chr6_2:2386759-2386778 None:intergenic 50.0%
TGTGCGTTCGCTGAACATCT+TGG - chr6_2:2386766-2386785 None:intergenic 50.0%
GCTTCCATCACCCATGAGAG+AGG - chr6_2:2380463-2380482 None:intergenic 55.0%
TAACGCTGCTGCAGCTCTCA+TGG + chr6_2:2380941-2380960 Msa0904600:intron 55.0%
TCTTCGAGATGGGAGATGGG+TGG + chr6_2:2381120-2381139 Msa0904600:intron 55.0%
CAAGTAGACGAGCATCCGCA+GGG - chr6_2:2381207-2381226 None:intergenic 55.0%
TCAAGTAGACGAGCATCCGC+AGG - chr6_2:2381208-2381227 None:intergenic 55.0%
GCGGATGCTCGTCTACTTGA+AGG + chr6_2:2381208-2381227 Msa0904600:CDS 55.0%
GTCACTGGGACCTTTGTGAC+CGG - chr6_2:2381377-2381396 None:intergenic 55.0%
ATCACACCGCTTAGCTCAGC+AGG + chr6_2:2381861-2381880 Msa0904600:CDS 55.0%
CCGAGCAGCCATGAGAACAA+CGG - chr6_2:2382353-2382372 None:intergenic 55.0%
CCGTTGTTCTCATGGCTGCT+CGG + chr6_2:2382350-2382369 Msa0904600:CDS 55.0%
CGTTGTTCTCATGGCTGCTC+GGG + chr6_2:2382351-2382370 Msa0904600:CDS 55.0%
AGAGCTGTCCGCTTGTCAGT+AGG - chr6_2:2382974-2382993 None:intergenic 55.0%
! TCGTGTCAGCAAAGGTGCAC+CGG + chr6_2:2383024-2383043 Msa0904600:CDS 55.0%
AATTTGCCGAGCGAGGGTTG+CGG + chr6_2:2383198-2383217 Msa0904600:CDS 55.0%
! GTCTCTTGCTGTAGCCTACC+AGG + chr6_2:2383220-2383239 Msa0904600:CDS 55.0%
CATGAGCCCGATAAACTGCC+AGG - chr6_2:2383382-2383401 None:intergenic 55.0%
AACAGGACGCCGTCTAGGAA+TGG + chr6_2:2383658-2383677 Msa0904600:CDS 55.0%
ACAGGACGCCGTCTAGGAAT+GGG + chr6_2:2383659-2383678 Msa0904600:CDS 55.0%
TCTGCCAGCTTCCAGCTATC+TGG - chr6_2:2385171-2385190 None:intergenic 55.0%
!! GGGGTTGGGCTGGTATTGTT+TGG + chr6_2:2386299-2386318 Msa0904600:intron 55.0%
ATGTATTGAGTGGCCGGGCT+TGG + chr6_2:2386377-2386396 Msa0904600:intron 55.0%
TGTATTGAGTGGCCGGGCTT+GGG + chr6_2:2386378-2386397 Msa0904600:intron 55.0%
CAAGGGCCATGTTGAGTCAG+TGG + chr6_2:2386992-2387011 Msa0904600:CDS 55.0%
TCGAGATGGGAGATGGGTGG+AGG + chr6_2:2381123-2381142 Msa0904600:intron 60.0%
! GGCAAGGGCTGGTATCCAAG+AGG + chr6_2:2382928-2382947 Msa0904600:intron 60.0%
AAGAGACCGCAACCCTCGCT+CGG - chr6_2:2383207-2383226 None:intergenic 60.0%
TTGTAACGCGGTCACGGAGC+TGG + chr6_2:2385645-2385664 Msa0904600:CDS 60.0%
! CAGCAAAGGTGCACCGGAGC+AGG + chr6_2:2383030-2383049 Msa0904600:CDS 65.0%
GGGATTGGATGGGGTTGGGC+TGG + chr6_2:2386289-2386308 Msa0904600:intron 65.0%
GGCTGCTCGGGCTTCCAGAG+TGG + chr6_2:2382363-2382382 Msa0904600:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 2379547 2387067 2379547 ID=Msa0904600;Name=Msa0904600
chr6_2 mRNA 2379547 2387067 2379547 ID=Msa0904600-mRNA-1;Parent=Msa0904600;Name=Msa0904600-mRNA-1;_AED=0.18;_eAED=0.18;_QI=113|0.44|0.31|1|1|1|19|0|775
chr6_2 exon 2379547 2379713 2379547 ID=Msa0904600-mRNA-1:exon:770;Parent=Msa0904600-mRNA-1
chr6_2 exon 2379937 2380056 2379937 ID=Msa0904600-mRNA-1:exon:771;Parent=Msa0904600-mRNA-1
chr6_2 exon 2380421 2380519 2380421 ID=Msa0904600-mRNA-1:exon:772;Parent=Msa0904600-mRNA-1
chr6_2 exon 2380849 2380879 2380849 ID=Msa0904600-mRNA-1:exon:773;Parent=Msa0904600-mRNA-1
chr6_2 exon 2381170 2381292 2381170 ID=Msa0904600-mRNA-1:exon:774;Parent=Msa0904600-mRNA-1
chr6_2 exon 2381410 2381528 2381410 ID=Msa0904600-mRNA-1:exon:775;Parent=Msa0904600-mRNA-1
chr6_2 exon 2381676 2381882 2381676 ID=Msa0904600-mRNA-1:exon:776;Parent=Msa0904600-mRNA-1
chr6_2 exon 2382322 2382441 2382322 ID=Msa0904600-mRNA-1:exon:777;Parent=Msa0904600-mRNA-1
chr6_2 exon 2382929 2383051 2382929 ID=Msa0904600-mRNA-1:exon:778;Parent=Msa0904600-mRNA-1
chr6_2 exon 2383137 2383241 2383137 ID=Msa0904600-mRNA-1:exon:779;Parent=Msa0904600-mRNA-1
chr6_2 exon 2383342 2383444 2383342 ID=Msa0904600-mRNA-1:exon:780;Parent=Msa0904600-mRNA-1
chr6_2 exon 2383633 2383797 2383633 ID=Msa0904600-mRNA-1:exon:781;Parent=Msa0904600-mRNA-1
chr6_2 exon 2384081 2384319 2384081 ID=Msa0904600-mRNA-1:exon:782;Parent=Msa0904600-mRNA-1
chr6_2 exon 2384409 2384441 2384409 ID=Msa0904600-mRNA-1:exon:783;Parent=Msa0904600-mRNA-1
chr6_2 exon 2384527 2384608 2384527 ID=Msa0904600-mRNA-1:exon:784;Parent=Msa0904600-mRNA-1
chr6_2 exon 2385121 2385281 2385121 ID=Msa0904600-mRNA-1:exon:785;Parent=Msa0904600-mRNA-1
chr6_2 exon 2385539 2385724 2385539 ID=Msa0904600-mRNA-1:exon:786;Parent=Msa0904600-mRNA-1
chr6_2 exon 2386684 2386844 2386684 ID=Msa0904600-mRNA-1:exon:787;Parent=Msa0904600-mRNA-1
chr6_2 exon 2386971 2387067 2386971 ID=Msa0904600-mRNA-1:exon:788;Parent=Msa0904600-mRNA-1
chr6_2 five_prime_UTR 2379547 2379659 2379547 ID=Msa0904600-mRNA-1:five_prime_utr;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2379660 2379713 2379660 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2379937 2380056 2379937 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2380421 2380519 2380421 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2380849 2380879 2380849 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2381170 2381292 2381170 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2381410 2381528 2381410 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2381676 2381882 2381676 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2382322 2382441 2382322 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2382929 2383051 2382929 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2383137 2383241 2383137 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2383342 2383444 2383342 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2383633 2383797 2383633 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2384081 2384319 2384081 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2384409 2384441 2384409 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2384527 2384608 2384527 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2385121 2385281 2385121 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2385539 2385724 2385539 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2386684 2386844 2386684 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
chr6_2 CDS 2386971 2387067 2386971 ID=Msa0904600-mRNA-1:cds;Parent=Msa0904600-mRNA-1
Gene Sequence

>Msa0904600

ATGGCTGATAAAGAAGAAGCCATGCATGCTGTTTTGAAAGAAGCTGTTGATTTGGAAAATGTGCCAATTGAGGAAGTGTTTCAAACTTTGAGGTGTGATTCAAATGGACTCACAACAATGGCTGCTCAAGAGAGGTTGGCTATCTTTGGTCACAACAAACTTGAGGAGAAACAGGAAAGCAAGTTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTCTCATGGGTGATGGAAGCTGCAGCAATCATGGCTATTGCTTTGGCCAATGGAGGAAATAAACCACCCGATTGGCAAGACTTTGTTGGCGATATAATTAGTGTTAAGCTAGGTGATATTATCCCTGCGGATGCTCGTCTACTTGAAGGTGATCCGTTGAAGATTGATCAAGTGCAACTTATAGCCTTTGCTATCTTGTTTTTCTATATCGGCTCTACATGCAAACAGGGAGAGATAGAAGCAGTTGTTATTGCAACCGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTAGTCGACTCCACAAATCAAGTCGGGCATTTTCAGCAGGTCCTAACTTCAATTGGGAACTTTTGTATATGTTCAATTGCTGTGGGAATGATAGTTGAGATCATTGTCATGTACCCAATTCAACACCGAAAATATCGTCCAGGGATTGATAATCTACTTGTGCTTCTCATTGGAGGAATTCCTATTGCCATGCCTACAGTTTTGTCAGTTACAATGGCAATCGGATCACACCGCTTAGCTCAGCAGATTTTTGCTAAAGGAGTTGACGCAGATACCGTTGTTCTCATGGCTGCTCGGGCTTCCAGAGTGGAAAACCAAGATGCTATAGATGCTGCTATTATAGGGATGCTAGGTGATCCAAAAGAGGCAAGGGCTGGTATCCAAGAGGTTCACTTTCTTCCCTTCAATCCTACTGACAAGCGGACAGCTCTAACTTATATAGACAGTGAACGTAAAATGCATCGTGTCAGCAAAGGTGCACCGGAGCAGATTTTGAATCTTGCACATAATAAGTCAGAGATAGAACGCAGAGTTCATGCAGTCATCGATAAATTTGCCGAGCGAGGGTTGCGGTCTCTTGCTGTAGCCTACCAGGAAGTTCCTGATGGAAAGAAAGAAAGCCAAGGAAGACCCTGGCAGTTTATCGGGCTCATGCCTTTATTCGACCCACCTAGACATGATAGTGCAGAGACGATAAGTGATCAACTATCAATAGCGAAAGAAACAGGACGCCGTCTAGGAATGGGAACTAACATGTACCCTTCATCAGCTTTATTAGGCCAGAACAAGGATGAAGGAATTGGCCTCTTACCAGTTGATGATTTGATTGAAAAAGCTGATGGATTTGCCGGTGTTTTTCCTGAACACAAATATGAGATCGTGAAACGTTTGCAAGCTAGGAAACACATATGTGGAATGACCGGTGATGGTGTTAATGATGCTCCTGCTCTTAAGAAAGCAGATATTGGAATAGCTGTTGACGATGCAACTGATGCAGCTCGTAGTGCTTCCGACATTGTTCTAACAGAACCAGGTCTCAGTGTTATCATTAGCGCCGTGCTGACCAGTCGAGCAATATTCCAAAGAATGAAGAATTACACAATTTATGCAGTTTCGATCACGATCCGTATTGTACTTGGTTTCATGTTACTGGCACTCATATGGCAATTTGATTTTCCACCATTCATGGTACTGATTATTGCTATTCTTAATGATGGTACAATTATGACAATATCTAAGGATAGAGTAAAGCCATCTCCATATCCAGATAGCTGGAAGCTGGCAGAGATATTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTAGCACATTTGGAGTATCAAGTCTTCAGAAAGAGGATAGGGATGATATTAGAAAGCTTGCCTCAGCAATATACCTACAAGTTAGTACAATTAGTCAGGCCCTTATATTTGTAACGCGGTCACGGAGCTGGTCTTTTGTTGAGCGACCGGGTTTGTTACTTGTAGCAGCTTTTGTCATTGCTCAACTGAAAGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCGCATGCGCAAAGAACACTTCATGGTCTTCACCCGCCAGAGACCAAGATGTTCAGCGAACGCACAAATTATACAGAGCTTAATCAGATGGCTGAAGAGGCTAAAAAACGAGCGGAAATTGCAAGAATTAGAGAGTTGCACACACTCAAGGGCCATGTTGAGTCAGTGGTTAGAATGAAGGGTCTTGACATTGACACAATACAGCAAGCATACACTGTATAA
Protein sequence

>Msa0904600

MADKEEAMHAVLKEAVDLENVPIEEVFQTLRCDSNGLTTMAAQERLAIFGHNKLEEKQESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGNKPPDWQDFVGDIISVKLGDIIPADARLLEGDPLKIDQVQLIAFAILFFYIGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQQVLTSIGNFCICSIAVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQIFAKGVDADTVVLMAARASRVENQDAIDAAIIGMLGDPKEARAGIQEVHFLPFNPTDKRTALTYIDSERKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGKKESQGRPWQFIGLMPLFDPPRHDSAETISDQLSIAKETGRRLGMGTNMYPSSALLGQNKDEGIGLLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPSTFGVSSLQKEDRDDIRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFVIAQLKDFGKEERELKWAHAQRTLHGLHPPETKMFSERTNYTELNQMAEEAKKRAEIARIRELHTLKGHVESVVRMKGLDIDTIQQAYTV*