Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871430 | KAF2311356.1 | 66.529 | 242 | 38 | 2 | 1 | 199 | 1 | 242 | 1.87e-90 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871430 | sp|Q9LV11|PMA11_ARATH | 64.800 | 250 | 37 | 2 | 1 | 199 | 1 | 250 | 2.01e-94 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871430 | A0A072UGQ2 | 74.400 | 250 | 13 | 2 | 1 | 199 | 1 | 250 | 1.73e-106 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0871430 | 0.853758 | 1.933143e-61 | -8.615850e-47 |
| Msa0026630 | Msa0871430 | 0.811383 | 7.196088e-51 | -8.615850e-47 |
| Msa0030230 | Msa0871430 | 0.805725 | 1.161875e-49 | -8.615850e-47 |
| Msa0034970 | Msa0871430 | 0.815318 | 9.829648e-52 | -8.615850e-47 |
| Msa0037320 | Msa0871430 | 0.802080 | 6.648269e-49 | -8.615850e-47 |
| Msa0043980 | Msa0871430 | 0.800455 | 1.430082e-48 | -8.615850e-47 |
| Msa0049750 | Msa0871430 | 0.853835 | 1.837090e-61 | -8.615850e-47 |
| Msa0051210 | Msa0871430 | 0.812859 | 3.428990e-51 | -8.615850e-47 |
| Msa0051450 | Msa0871430 | 0.815345 | 9.693440e-52 | -8.615850e-47 |
| Msa0065950 | Msa0871430 | 0.801157 | 1.027957e-48 | -8.615850e-47 |
| Msa0071090 | Msa0871430 | 0.800344 | 1.505952e-48 | -8.615850e-47 |
| Msa0079130 | Msa0871430 | 0.809206 | 2.121598e-50 | -8.615850e-47 |
| Msa0101830 | Msa0871430 | 0.825661 | 4.149923e-54 | -8.615850e-47 |
| Msa0107400 | Msa0871430 | 0.824564 | 7.537358e-54 | -8.615850e-47 |
| Msa0604290 | Msa0871430 | 0.801359 | 9.343870e-49 | -8.615850e-47 |
| Msa0641130 | Msa0871430 | 0.825893 | 3.655903e-54 | -8.615850e-47 |
| Msa0645530 | Msa0871430 | 0.836536 | 8.837498e-57 | -8.615850e-47 |
| Msa0657120 | Msa0871430 | 0.810582 | 1.072867e-50 | -8.615850e-47 |
| Msa0662540 | Msa0871430 | 0.804149 | 2.481870e-49 | -8.615850e-47 |
| Msa0685090 | Msa0871430 | 0.843449 | 1.391501e-58 | -8.615850e-47 |
| Msa0701100 | Msa0871430 | 0.805915 | 1.060061e-49 | -8.615850e-47 |
| Msa0702550 | Msa0871430 | 0.807163 | 5.780127e-50 | -8.615850e-47 |
| Msa0763890 | Msa0871430 | 0.822731 | 2.024653e-53 | -8.615850e-47 |
| Msa0763920 | Msa0871430 | 0.820782 | 5.719132e-53 | -8.615850e-47 |
| Msa0795340 | Msa0871430 | 0.809880 | 1.520106e-50 | -8.615850e-47 |
| Msa0803520 | Msa0871430 | 0.810071 | 1.382784e-50 | -8.615850e-47 |
| Msa0808100 | Msa0871430 | 0.806859 | 6.702094e-50 | -8.615850e-47 |
| Msa0812950 | Msa0871430 | 0.821190 | 4.606141e-53 | -8.615850e-47 |
| Msa0126790 | Msa0871430 | 0.809218 | 2.109553e-50 | -8.615850e-47 |
| Msa0138020 | Msa0871430 | 0.813000 | 3.193520e-51 | -8.615850e-47 |
| Msa0149890 | Msa0871430 | 0.801103 | 1.054349e-48 | -8.615850e-47 |
| Msa0153830 | Msa0871430 | 0.813251 | 2.813517e-51 | -8.615850e-47 |
| Msa0153980 | Msa0871430 | 0.816741 | 4.730576e-52 | -8.615850e-47 |
| Msa0164910 | Msa0871430 | 0.810569 | 1.079861e-50 | -8.615850e-47 |
| Msa0175840 | Msa0871430 | 0.804478 | 2.118597e-49 | -8.615850e-47 |
| Msa0178040 | Msa0871430 | 0.801512 | 8.695168e-49 | -8.615850e-47 |
| Msa0189030 | Msa0871430 | 0.809596 | 1.750060e-50 | -8.615850e-47 |
| Msa0196670 | Msa0871430 | 0.820851 | 5.513317e-53 | -8.615850e-47 |
| Msa0206010 | Msa0871430 | 0.841973 | 3.433848e-58 | -8.615850e-47 |
| Msa0218370 | Msa0871430 | 0.820937 | 5.268104e-53 | -8.615850e-47 |
| Msa0236420 | Msa0871430 | 0.827092 | 1.893742e-54 | -8.615850e-47 |
| Msa0388730 | Msa0871430 | 0.823094 | 1.666595e-53 | -8.615850e-47 |
| Msa0392280 | Msa0871430 | 0.813514 | 2.462857e-51 | -8.615850e-47 |
| Msa0403490 | Msa0871430 | 0.804279 | 2.331114e-49 | -8.615850e-47 |
| Msa0428200 | Msa0871430 | 0.804018 | 2.641931e-49 | -8.615850e-47 |
| Msa0438040 | Msa0871430 | 0.813565 | 2.399603e-51 | -8.615850e-47 |
| Msa0455760 | Msa0871430 | 0.812047 | 5.161001e-51 | -8.615850e-47 |
| Msa0471900 | Msa0871430 | 0.805783 | 1.129878e-49 | -8.615850e-47 |
| Msa0240270 | Msa0871430 | 0.809028 | 2.316189e-50 | -8.615850e-47 |
| Msa0249100 | Msa0871430 | 0.816739 | 4.734515e-52 | -8.615850e-47 |
| Msa0249310 | Msa0871430 | 0.809342 | 1.983953e-50 | -8.615850e-47 |
| Msa0253200 | Msa0871430 | 0.801704 | 7.940537e-49 | -8.615850e-47 |
| Msa0265150 | Msa0871430 | 0.817080 | 3.969495e-52 | -8.615850e-47 |
| Msa0270960 | Msa0871430 | 0.830713 | 2.515644e-55 | -8.615850e-47 |
| Msa0286670 | Msa0871430 | 0.807017 | 6.206801e-50 | -8.615850e-47 |
| Msa0287410 | Msa0871430 | 0.803526 | 3.342868e-49 | -8.615850e-47 |
| Msa0287790 | Msa0871430 | 0.827648 | 1.393066e-54 | -8.615850e-47 |
| Msa0287870 | Msa0871430 | 0.804935 | 1.700750e-49 | -8.615850e-47 |
| Msa0292030 | Msa0871430 | 0.803240 | 3.831668e-49 | -8.615850e-47 |
| Msa0303150 | Msa0871430 | 0.803758 | 2.992154e-49 | -8.615850e-47 |
| Msa0308440 | Msa0871430 | 0.831675 | 1.459121e-55 | -8.615850e-47 |
| Msa0309270 | Msa0871430 | 0.804974 | 1.669354e-49 | -8.615850e-47 |
| Msa0317960 | Msa0871430 | 0.804200 | 2.421671e-49 | -8.615850e-47 |
| Msa0326110 | Msa0871430 | 0.836214 | 1.067002e-56 | -8.615850e-47 |
| Msa0363790 | Msa0871430 | 0.803911 | 2.780278e-49 | -8.615850e-47 |
| Msa0486690 | Msa0871430 | 0.800956 | 1.130090e-48 | -8.615850e-47 |
| Msa0487710 | Msa0871430 | 0.801907 | 7.213017e-49 | -8.615850e-47 |
| Msa0518170 | Msa0871430 | 0.805052 | 1.607866e-49 | -8.615850e-47 |
| Msa0519160 | Msa0871430 | 0.818595 | 1.805598e-52 | -8.615850e-47 |
| Msa0545050 | Msa0871430 | 0.818514 | 1.883499e-52 | -8.615850e-47 |
| Msa0561240 | Msa0871430 | 0.820241 | 7.610955e-53 | -8.615850e-47 |
| Msa0566350 | Msa0871430 | 0.813267 | 2.791101e-51 | -8.615850e-47 |
| Msa0566750 | Msa0871430 | 0.805092 | 1.577384e-49 | -8.615850e-47 |
| Msa0600590 | Msa0871430 | 0.817330 | 3.487683e-52 | -8.615850e-47 |
| Msa0844110 | Msa0871430 | 0.805233 | 1.473756e-49 | -8.615850e-47 |
| Msa0871430 | Msa0904600 | 0.853873 | 1.791839e-61 | -8.615850e-47 |
| Msa0871430 | Msa0905730 | 0.801335 | 9.453767e-49 | -8.615850e-47 |
| Msa0871430 | Msa0915610 | 0.812100 | 5.023502e-51 | -8.615850e-47 |
| Msa0871430 | Msa0936640 | 0.899849 | 1.318357e-77 | -8.615850e-47 |
| Msa0871430 | Msa0954840 | 0.832478 | 9.238803e-56 | -8.615850e-47 |
| Msa0871430 | Msa0958920 | 0.825887 | 3.668711e-54 | -8.615850e-47 |
| Msa0871430 | Msa0973860 | 0.824872 | 6.377726e-54 | -8.615850e-47 |
| Msa0871430 | Msa0992580 | 0.805382 | 1.371759e-49 | -8.615850e-47 |
| Msa0871430 | Msa0992600 | 0.804607 | 1.991439e-49 | -8.615850e-47 |
| Msa0871430 | Msa1006730 | 0.815284 | 1.000286e-51 | -8.615850e-47 |
| Msa0871430 | Msa1008390 | 0.818546 | 1.852437e-52 | -8.615850e-47 |
| Msa0871430 | Msa1008400 | 0.822923 | 1.826882e-53 | -8.615850e-47 |
| Msa0871430 | Msa1013070 | 0.852036 | 6.008363e-61 | -8.615850e-47 |
| Msa0871430 | Msa1026640 | 0.810314 | 1.226108e-50 | -8.615850e-47 |
| Msa0871430 | Msa1094280 | 0.809033 | 2.311047e-50 | -8.615850e-47 |
| Msa0871430 | Msa1098930 | 0.814616 | 1.406769e-51 | -8.615850e-47 |
| Msa0871430 | Msa1107200 | 0.804814 | 1.803153e-49 | -8.615850e-47 |
| Msa0871430 | Msa1107260 | 0.831190 | 1.920449e-55 | -8.615850e-47 |
| Msa0871430 | Msa1109810 | 0.803919 | 2.769803e-49 | -8.615850e-47 |
| Msa0871430 | Msa1112250 | 0.816006 | 6.907474e-52 | -8.615850e-47 |
| Msa0871430 | Msa1122150 | 0.838024 | 3.676815e-57 | -8.615850e-47 |
| Msa0871430 | Msa1150900 | 0.823853 | 1.107434e-53 | -8.615850e-47 |
| Msa0871430 | Msa1160560 | 0.834034 | 3.785472e-56 | -8.615850e-47 |
| Msa0871430 | Msa1208370 | 0.850685 | 1.447500e-60 | -8.615850e-47 |
| Msa0871430 | Msa1208380 | 0.809760 | 1.613582e-50 | -8.615850e-47 |
| Msa0871430 | Msa1270660 | 0.801790 | 7.624723e-49 | -8.615850e-47 |
| Msa0871430 | Msa1270730 | 0.819027 | 1.440973e-52 | -8.615850e-47 |
| Msa0871430 | Msa1274510 | 0.804856 | 1.766744e-49 | -8.615850e-47 |
| Msa0871430 | Msa1335230 | 0.838231 | 3.251364e-57 | -8.615850e-47 |
| Msa0871430 | Msa1368360 | 0.816562 | 5.187000e-52 | -8.615850e-47 |
| Msa0871430 | Msa1369920 | -0.821848 | 3.245807e-53 | -8.615850e-47 |
| Msa0871430 | Msa1377080 | 0.810830 | 9.482405e-51 | -8.615850e-47 |
| Msa0871430 | Msa1397120 | 0.800570 | 1.354371e-48 | -8.615850e-47 |
| Msa0871430 | Msa1401460 | 0.821262 | 4.432536e-53 | -8.615850e-47 |
| Msa0871430 | Msa1407600 | 0.822687 | 2.073588e-53 | -8.615850e-47 |
| Msa0871430 | Msa1411410 | 0.802380 | 5.767420e-49 | -8.615850e-47 |
| Msa0871430 | Msa1419840 | 0.840585 | 7.960197e-58 | -8.615850e-47 |
| Msa0871430 | Msa1423540 | 0.813633 | 2.318424e-51 | -8.615850e-47 |
| Msa0871430 | Msa1423820 | 0.841922 | 3.542343e-58 | -8.615850e-47 |
| Msa0871430 | Msa1437330 | 0.829871 | 4.039973e-55 | -8.615850e-47 |
| Msa0871430 | Msa1438840 | 0.816379 | 5.701039e-52 | -8.615850e-47 |
| Msa0871430 | Msa1458680 | 0.803561 | 3.286469e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871430 | MtrunA17_Chr6g0452721 | 74.400 | 250 | 13 | 2 | 1 | 199 | 1 | 250 | 3.98e-110 | 336 |
| Msa0871430 | MtrunA17_Chr4g0059961 | 64.113 | 248 | 38 | 2 | 3 | 199 | 5 | 252 | 6.54e-92 | 288 |
| Msa0871430 | MtrunA17_Chr4g0072131 | 57.895 | 247 | 53 | 2 | 4 | 199 | 5 | 251 | 2.36e-88 | 279 |
| Msa0871430 | MtrunA17_Chr2g0304941 | 60.338 | 237 | 43 | 2 | 14 | 199 | 13 | 249 | 5.65e-88 | 277 |
| Msa0871430 | MtrunA17_Chr4g0065481 | 60.338 | 237 | 43 | 2 | 14 | 199 | 13 | 249 | 6.43e-86 | 272 |
| Msa0871430 | MtrunA17_Chr2g0333721 | 58.228 | 237 | 48 | 2 | 14 | 199 | 10 | 246 | 1.97e-77 | 249 |
| Msa0871430 | MtrunA17_Chr1g0148031 | 56.967 | 244 | 54 | 2 | 7 | 199 | 5 | 248 | 3.29e-77 | 249 |
| Msa0871430 | MtrunA17_Chr3g0138931 | 56.557 | 244 | 55 | 2 | 7 | 199 | 5 | 248 | 2.21e-76 | 246 |
| Msa0871430 | MtrunA17_Chr8g0335291 | 55.469 | 256 | 57 | 3 | 1 | 199 | 1 | 256 | 2.35e-76 | 246 |
| Msa0871430 | MtrunA17_Chr7g0276541 | 53.306 | 242 | 50 | 3 | 14 | 192 | 19 | 260 | 2.39e-76 | 231 |
| Msa0871430 | MtrunA17_Chr2g0298031 | 56.557 | 244 | 55 | 2 | 7 | 199 | 10 | 253 | 3.39e-76 | 246 |
| Msa0871430 | MtrunA17_Chr8g0365021 | 56.723 | 238 | 52 | 2 | 13 | 199 | 81 | 318 | 1.58e-72 | 237 |
| Msa0871430 | MtrunA17_Chr1g0147981 | 57.082 | 233 | 49 | 2 | 18 | 199 | 33 | 265 | 1.65e-70 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871430 | AT5G62670.1 | 64.800 | 250 | 37 | 2 | 1 | 199 | 1 | 250 | 2.04e-95 | 298 |
| Msa0871430 | AT3G47950.1 | 64.516 | 248 | 37 | 2 | 3 | 199 | 7 | 254 | 6.33e-93 | 291 |
| Msa0871430 | AT3G47950.2 | 64.516 | 248 | 37 | 2 | 3 | 199 | 7 | 254 | 6.33e-93 | 291 |
| Msa0871430 | AT3G60330.4 | 58.776 | 245 | 50 | 2 | 6 | 199 | 5 | 249 | 1.23e-88 | 280 |
| Msa0871430 | AT3G60330.3 | 58.776 | 245 | 50 | 2 | 6 | 199 | 5 | 249 | 1.23e-88 | 280 |
| Msa0871430 | AT3G60330.2 | 57.959 | 245 | 52 | 2 | 6 | 199 | 5 | 249 | 1.39e-87 | 277 |
| Msa0871430 | AT3G60330.1 | 57.959 | 245 | 52 | 2 | 6 | 199 | 5 | 249 | 1.39e-87 | 277 |
| Msa0871430 | AT3G42640.1 | 59.494 | 237 | 45 | 2 | 14 | 199 | 13 | 249 | 8.66e-85 | 270 |
| Msa0871430 | AT2G07560.1 | 59.494 | 237 | 45 | 2 | 14 | 199 | 13 | 249 | 1.57e-84 | 269 |
| Msa0871430 | AT2G24520.2 | 55.466 | 247 | 59 | 2 | 4 | 199 | 45 | 291 | 2.95e-84 | 269 |
| Msa0871430 | AT2G18960.1 | 59.836 | 244 | 47 | 2 | 7 | 199 | 3 | 246 | 6.07e-83 | 265 |
| Msa0871430 | AT5G57350.4 | 61.250 | 240 | 42 | 2 | 11 | 199 | 8 | 247 | 7.09e-83 | 264 |
| Msa0871430 | AT5G57350.2 | 61.250 | 240 | 42 | 2 | 11 | 199 | 8 | 247 | 7.09e-83 | 264 |
| Msa0871430 | AT5G57350.1 | 61.250 | 240 | 42 | 2 | 11 | 199 | 8 | 247 | 7.09e-83 | 264 |
| Msa0871430 | AT4G30190.1 | 59.016 | 244 | 49 | 2 | 7 | 199 | 3 | 246 | 1.11e-81 | 261 |
| Msa0871430 | AT4G30190.2 | 59.016 | 244 | 49 | 2 | 7 | 199 | 3 | 246 | 1.98e-81 | 261 |
| Msa0871430 | AT2G24520.3 | 57.456 | 228 | 46 | 2 | 23 | 199 | 1 | 228 | 2.01e-80 | 258 |
| Msa0871430 | AT2G24520.1 | 57.456 | 228 | 46 | 2 | 23 | 199 | 1 | 228 | 2.01e-80 | 258 |
| Msa0871430 | AT1G80660.3 | 56.627 | 249 | 57 | 2 | 2 | 199 | 3 | 251 | 9.83e-79 | 253 |
| Msa0871430 | AT1G80660.4 | 56.627 | 249 | 57 | 2 | 2 | 199 | 3 | 251 | 1.04e-78 | 253 |
| Msa0871430 | AT1G80660.1 | 56.627 | 249 | 57 | 2 | 2 | 199 | 3 | 251 | 1.37e-78 | 253 |
| Msa0871430 | AT1G17260.1 | 54.430 | 237 | 57 | 2 | 14 | 199 | 18 | 254 | 3.26e-65 | 216 |
| Msa0871430 | AT2G18960.3 | 65.000 | 180 | 14 | 1 | 69 | 199 | 3 | 182 | 1.12e-61 | 206 |
| Msa0871430 | AT2G18960.2 | 65.000 | 180 | 14 | 1 | 69 | 199 | 3 | 182 | 1.12e-61 | 206 |
| Msa0871430 | AT4G11730.1 | 48.069 | 233 | 64 | 4 | 17 | 196 | 17 | 245 | 1.49e-60 | 202 |
| Msa0871430 | AT1G80660.2 | 80.851 | 94 | 18 | 0 | 106 | 199 | 29 | 122 | 9.52e-46 | 161 |
Find 82 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGGAGTTCATACCTTCTT+TGG | 0.270815 | 6_1:+6317626 | Msa0871430:CDS |
| GAGGAGAGGTTGGCTATCTT+TGG | 0.289972 | 6_1:+6316183 | Msa0871430:CDS |
| AGCATTAAAATCTTGGGTTT+TGG | 0.302407 | 6_1:+6315740 | Msa0871430:five_prime_UTR |
| CCCAGTGACAGTGTTTATTC+AGG | 0.322417 | 6_1:+6317560 | Msa0871430:CDS |
| ACTTTGCAGCATTAAAATCT+TGG | 0.328550 | 6_1:+6315733 | Msa0871430:five_prime_UTR |
| CGGTTGTAGTCTGCACTTAC+AGG | 0.336796 | 6_1:+6317512 | Msa0871430:intron |
| GTTTGAAACACTTCCTCAAT+TGG | 0.340289 | 6_1:-6316120 | None:intergenic |
| CAAAAGTTCCCATTGAAGTT+AGG | 0.341201 | 6_1:-6317842 | None:intergenic |
| TTCAGGCTCTACATGCAAAC+AGG | 0.371019 | 6_1:+6317577 | Msa0871430:CDS |
| AATCTACTTGTGCTTCTCAT+TGG | 0.384442 | 6_1:+6317950 | Msa0871430:three_prime_UTR |
| AGCAATCATGGCTATTGCTT+TGG | 0.388777 | 6_1:+6316668 | Msa0871430:CDS |
| GCGGATGCTCGTTTACTTGA+AGG | 0.400028 | 6_1:+6317380 | Msa0871430:CDS |
| CTTTGCAGCATTAAAATCTT+GGG | 0.400175 | 6_1:+6315734 | Msa0871430:five_prime_UTR |
| CCGTTGTTCTCATGGCTGCT+CGG | 0.401363 | 6_1:+6318503 | Msa0871430:three_prime_UTR |
| GAAGCAGTTGTTATTGCAAC+CGG | 0.405843 | 6_1:+6317608 | Msa0871430:CDS |
| CGCAGATACCGTTGTTCTCA+TGG | 0.409745 | 6_1:+6318495 | Msa0871430:three_prime_UTR |
| TTTGACAGAAGCTGTTGATT+TGG | 0.418241 | 6_1:+6315800 | Msa0871430:CDS |
| TAAACAGGTCCTAACTTCAA+TGG | 0.434617 | 6_1:+6317833 | Msa0871430:intron |
| GCCTGAATAAACACTGTCAC+TGG | 0.440032 | 6_1:-6317561 | None:intergenic |
| CCGACGAAGTCTTGCCAATC+GGG | 0.455072 | 6_1:-6317029 | None:intergenic |
| CGTTGTTCTCATGGCTGCTC+GGG | 0.455110 | 6_1:+6318504 | Msa0871430:three_prime_UTR |
| AAAATGCCCGACTTGATTTG+TGG | 0.456751 | 6_1:-6317672 | None:intergenic |
| AAACAGGTCCTAACTTCAAT+GGG | 0.458255 | 6_1:+6317834 | Msa0871430:intron |
| TATAAGAGATATTCACATAA+AGG | 0.461843 | 6_1:+6315705 | Msa0871430:five_prime_UTR |
| ATCACACCGCTTAGCTCAGC+AGG | 0.468037 | 6_1:+6318024 | Msa0871430:three_prime_UTR |
| CTACTTGTGCTTCTCATTGG+AGG | 0.470393 | 6_1:+6317953 | Msa0871430:three_prime_UTR |
| ATGGCTATTGCTTTGGCCAA+TGG | 0.472871 | 6_1:+6316675 | Msa0871430:CDS |
| AGGAAGTGTTTCAAACTTTG+AGG | 0.475521 | 6_1:+6316127 | Msa0871430:CDS |
| GATGGAAGCTGCAGCAATCA+TGG | 0.476351 | 6_1:+6316656 | Msa0871430:CDS |
| TTTATGTGAATCCTCTCTCA+TGG | 0.477062 | 6_1:+6316631 | Msa0871430:CDS |
| TAGCAGCATCTATAGCATCT+TGG | 0.482236 | 6_1:-6318543 | None:intergenic |
| AGAACTGTAGGCATGGCAAT+AGG | 0.487318 | 6_1:-6317980 | None:intergenic |
| ACCGACGAAGTCTTGCCAAT+CGG | 0.487944 | 6_1:-6317030 | None:intergenic |
| AATAGAAGAGATGGCGGGTA+TGG | 0.488349 | 6_1:+6318292 | Msa0871430:three_prime_UTR |
| TTCTGTCAAAACAGCATGCA+TGG | 0.493950 | 6_1:-6315787 | None:intergenic |
| GTATTGTGCAGTGACAAAAC+TGG | 0.500312 | 6_1:+6318317 | Msa0871430:three_prime_UTR |
| TCAGGAAAATGTGCCAATTG+AGG | 0.501745 | 6_1:+6316107 | Msa0871430:intron |
| TCGGAAGCTTACTCCTCCAT+TGG | 0.510345 | 6_1:-6316691 | None:intergenic |
| TGTTGACAAGAATCTTATTG+AGG | 0.510437 | 6_1:+6318364 | Msa0871430:three_prime_UTR |
| AAAAGCTGCTGAGGAGAGGT+TGG | 0.514396 | 6_1:+6316173 | Msa0871430:CDS |
| CTGTCAGTTACAATGGCAAT+CGG | 0.520728 | 6_1:+6318001 | Msa0871430:three_prime_UTR |
| TCAAGTAAACGAGCATCCGC+AGG | 0.533069 | 6_1:-6317377 | None:intergenic |
| ACTTTGAGGTGTGATTCAAA+TGG | 0.534258 | 6_1:+6316141 | Msa0871430:CDS |
| TGATCCGTTGAAGATTGATC+AGG | 0.537179 | 6_1:+6317403 | Msa0871430:CDS |
| TGTATATGTTCAATTGCTGT+GGG | 0.538145 | 6_1:+6317863 | Msa0871430:CDS |
| AGTTCATACCTTCTTTGGCA+AGG | 0.542004 | 6_1:+6317631 | Msa0871430:CDS |
| TTGTATATGTTCAATTGCTG+TGG | 0.544457 | 6_1:+6317862 | Msa0871430:CDS |
| TTTAGAATAAACCACCCGAT+TGG | 0.545064 | 6_1:+6317015 | Msa0871430:intron |
| CAACACCGAAAATATCGTCC+AGG | 0.545951 | 6_1:+6317920 | Msa0871430:three_prime_UTR |
| ATGAGCAGCCTTGCCAAAGA+AGG | 0.546678 | 6_1:-6317639 | None:intergenic |
| ACTTACAGGTGAGTCTCTTC+CGG | 0.546957 | 6_1:+6317526 | Msa0871430:CDS |
| TCGACTCCACAAATCAAGTC+GGG | 0.549673 | 6_1:+6317666 | Msa0871430:CDS |
| CAACAAACTTGAGGAGAAGC+AGG | 0.550958 | 6_1:+6316209 | Msa0871430:CDS |
| TTCCTCGATGAAACTTATTG+TGG | 0.558619 | 6_1:-6317078 | None:intergenic |
| GAATCCTCTCTCATGGGTGA+TGG | 0.566844 | 6_1:+6316638 | Msa0871430:CDS |
| GCTATTGCTTTGGCCAATGG+AGG | 0.574253 | 6_1:+6316678 | Msa0871430:CDS |
| AATGACAGCAATAGAAGAGA+TGG | 0.576299 | 6_1:+6318283 | Msa0871430:three_prime_UTR |
| TACAGTTCTGTCAGTTACAA+TGG | 0.576813 | 6_1:+6317994 | Msa0871430:three_prime_UTR |
| CCTGAATAAACACTGTCACT+GGG | 0.587779 | 6_1:-6317560 | None:intergenic |
| TTATGTGAATCCTCTCTCAT+GGG | 0.588341 | 6_1:+6316632 | Msa0871430:CDS |
| CTTTGGTCACAACAAACTTG+AGG | 0.591192 | 6_1:+6316200 | Msa0871430:CDS |
| CAACAAAAGCTGCTGAGGAG+AGG | 0.592632 | 6_1:+6316169 | Msa0871430:CDS |
| GGCTGCTCGGGCTTCCAGAG+TGG | 0.595254 | 6_1:+6318516 | Msa0871430:three_prime_UTR |
| GAGTCTCTTCCGGTCACGAA+AGG | 0.597950 | 6_1:+6317536 | Msa0871430:CDS |
| GCCAAAGAAGGTATGAACTC+CGG | 0.600679 | 6_1:-6317627 | None:intergenic |
| ATTGTAACTGACAGAACTGT+AGG | 0.607606 | 6_1:-6317992 | None:intergenic |
| ACTCTCAACAAAAGCTGCTG+AGG | 0.609053 | 6_1:+6316164 | Msa0871430:CDS |
| AACTGACAGAACTGTAGGCA+TGG | 0.609587 | 6_1:-6317987 | None:intergenic |
| ACAAGTAGATTATCAATCCC+TGG | 0.610553 | 6_1:-6317938 | None:intergenic |
| GTCGACTCCACAAATCAAGT+CGG | 0.610771 | 6_1:+6317665 | Msa0871430:CDS |
| GACAGCAATAGAAGAGATGG+CGG | 0.621335 | 6_1:+6318286 | Msa0871430:three_prime_UTR |
| TGCACCTGATCAATCTTCAA+CGG | 0.622286 | 6_1:-6317407 | None:intergenic |
| GCTTCCATCACCCATGAGAG+AGG | 0.629828 | 6_1:-6316642 | None:intergenic |
| AACACCGAAAATATCGTCCA+GGG | 0.647523 | 6_1:+6317921 | Msa0871430:three_prime_UTR |
| ACGAAGTCTTGCCAATCGGG+TGG | 0.655034 | 6_1:-6317026 | None:intergenic |
| TGTCTACCTGCTGAGCTAAG+CGG | 0.655328 | 6_1:-6318030 | None:intergenic |
| ACAGCAATAGAAGAGATGGC+GGG | 0.657057 | 6_1:+6318287 | Msa0871430:three_prime_UTR |
| CAAGTAAACGAGCATCCGCA+GGG | 0.659972 | 6_1:-6317376 | None:intergenic |
| TCAGGCTCTACATGCAAACA+GGG | 0.668111 | 6_1:+6317578 | Msa0871430:CDS |
| CCCGATTGGCAAGACTTCGT+CGG | 0.669725 | 6_1:+6317029 | Msa0871430:CDS |
| CCGAGCAGCCATGAGAACAA+CGG | 0.711310 | 6_1:-6318503 | None:intergenic |
| GCTAGGTGATATTATCCCTG+CGG | 0.716733 | 6_1:+6317361 | Msa0871430:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTAAAAAAT+TGG | + | chr6_1:6315859-6315878 | Msa0871430:intron | 0.0% |
| !!! | TTTTTTTTTAATGAATTATG+TGG | + | chr6_1:6315936-6315955 | Msa0871430:intron | 10.0% |
| !! | ATACTCTTAATTATAAATTT+AGG | + | chr6_1:6317268-6317287 | Msa0871430:intron | 10.0% |
| !!! | GAGTTTATTTTTGATATTTT+TGG | + | chr6_1:6315974-6315993 | Msa0871430:intron | 15.0% |
| !!! | TACTATTTTGATTTTGTTTA+TGG | + | chr6_1:6316062-6316081 | Msa0871430:intron | 15.0% |
| !!! | AATAAATAAGTAAAAGTGTT+CGG | - | chr6_1:6316713-6316732 | None:intergenic | 15.0% |
| !!! | TTTTTATAGATTTTTGCTAA+AGG | + | chr6_1:6318466-6318485 | Msa0871430:intron | 15.0% |
| !! | TATAAGAGATATTCACATAA+AGG | + | chr6_1:6315705-6315724 | Msa0871430:five_prime_UTR | 20.0% |
| !!! | TTTTTAATGAATTATGTGGT+TGG | + | chr6_1:6315940-6315959 | Msa0871430:intron | 20.0% |
| !!! | TTCTAGTTTTTGTTTGATTA+TGG | + | chr6_1:6316028-6316047 | Msa0871430:intron | 20.0% |
| !!! | TTTGATTTTGTTTATGGTTA+AGG | + | chr6_1:6316068-6316087 | Msa0871430:intron | 20.0% |
| !! | CATATCATACATTAACATAA+GGG | - | chr6_1:6316307-6316326 | None:intergenic | 20.0% |
| !! | TCATATCATACATTAACATA+AGG | - | chr6_1:6316308-6316327 | None:intergenic | 20.0% |
| !!! | GAGAATATTTATTTTGATCA+TGG | + | chr6_1:6316739-6316758 | Msa0871430:intron | 20.0% |
| !! | CTTAGTTATCAACAAATTAA+TGG | - | chr6_1:6317477-6317496 | None:intergenic | 20.0% |
| !!! | ACAAAAAGCATAAATGATAT+AGG | - | chr6_1:6318235-6318254 | None:intergenic | 20.0% |
| !!! | AATAGTAAGTTTTTGTAATG+CGG | + | chr6_1:6318392-6318411 | Msa0871430:intron | 20.0% |
| !! | GGAAAAAAAGATCTTTTAAG+AGG | - | chr6_1:6316286-6316305 | None:intergenic | 25.0% |
| ! | ATGAAGTGTATATACTACAT+AGG | - | chr6_1:6316333-6316352 | None:intergenic | 25.0% |
| ! | ACACTAGTAATTTGAGAAAA+TGG | - | chr6_1:6316420-6316439 | None:intergenic | 25.0% |
| !!! | TTCACCTTTTTAGTATTTTG+TGG | + | chr6_1:6316552-6316571 | Msa0871430:intron | 25.0% |
| ! | AAAGCCACAAAATACTAAAA+AGG | - | chr6_1:6316559-6316578 | None:intergenic | 25.0% |
| !!! | AAGCAAGTTTTTGAAGTTTT+TGG | + | chr6_1:6316606-6316625 | Msa0871430:intron | 25.0% |
| !!! | AGCAAGTTTTTGAAGTTTTT+GGG | + | chr6_1:6316607-6316626 | Msa0871430:intron | 25.0% |
| !!! | TTGATCATGGTTTTAAATTG+CGG | + | chr6_1:6316752-6316771 | Msa0871430:intron | 25.0% |
| !!! | CTTTTAGAAATAGTTGTAGA+AGG | + | chr6_1:6316939-6316958 | Msa0871430:intron | 25.0% |
| ! | GATATAATTAGTGTTAAGCT+AGG | + | chr6_1:6317344-6317363 | Msa0871430:intron | 25.0% |
| !!! | TTTGTTGATAACTAAGATTC+TGG | + | chr6_1:6317481-6317500 | Msa0871430:intron | 25.0% |
| !!! | ATAACTAAGATTCTGGTTTT+CGG | + | chr6_1:6317488-6317507 | Msa0871430:intron | 25.0% |
| ! | ATTGATACTTAGCATTACTT+TGG | + | chr6_1:6317804-6317823 | Msa0871430:intron | 25.0% |
| ! | TTGATACTTAGCATTACTTT+GGG | + | chr6_1:6317805-6317824 | Msa0871430:intron | 25.0% |
| ! | CTATTGATATAAGTACTTGT+GGG | - | chr6_1:6318182-6318201 | None:intergenic | 25.0% |
| ! | TCTATTGATATAAGTACTTG+TGG | - | chr6_1:6318183-6318202 | None:intergenic | 25.0% |
| ! | AACATTAAAACACTTTCTGT+AGG | - | chr6_1:6318443-6318462 | None:intergenic | 25.0% |
| ACTTTGCAGCATTAAAATCT+TGG | + | chr6_1:6315733-6315752 | Msa0871430:five_prime_UTR | 30.0% | |
| CTTTGCAGCATTAAAATCTT+GGG | + | chr6_1:6315734-6315753 | Msa0871430:five_prime_UTR | 30.0% | |
| ! | AGCATTAAAATCTTGGGTTT+TGG | + | chr6_1:6315740-6315759 | Msa0871430:five_prime_UTR | 30.0% |
| !!! | GAGAAATGAGTGTTTTTTCT+TGG | - | chr6_1:6315828-6315847 | None:intergenic | 30.0% |
| ! | GGTTACTTGAATTTCTTTTC+AGG | + | chr6_1:6316089-6316108 | Msa0871430:intron | 30.0% |
| ! | TAGCAATATAAAGCATTTCG+AGG | - | chr6_1:6316844-6316863 | None:intergenic | 30.0% |
| AAATTTCACAACCACAATTG+CGG | - | chr6_1:6316867-6316886 | None:intergenic | 30.0% | |
| !!! | GATTTTGATTTTGAAGTGTG+TGG | + | chr6_1:6316895-6316914 | Msa0871430:intron | 30.0% |
| !!! | AGTTGTAGAAGGTTCTTTTT+TGG | + | chr6_1:6316950-6316969 | Msa0871430:intron | 30.0% |
| ! | TAAATTTAGGTTCTTCGAGA+TGG | + | chr6_1:6317281-6317300 | Msa0871430:intron | 30.0% |
| ! | AAATTTAGGTTCTTCGAGAT+GGG | + | chr6_1:6317282-6317301 | Msa0871430:intron | 30.0% |
| TTAACACTAATTATATCGCC+TGG | - | chr6_1:6317341-6317360 | None:intergenic | 30.0% | |
| !! | TTTCTCTCGTTTTTCTGTAT+CGG | + | chr6_1:6317441-6317460 | Msa0871430:intron | 30.0% |
| !! | TTTGAAACTAAGCGTGTTTT+TGG | + | chr6_1:6317720-6317739 | Msa0871430:intron | 30.0% |
| TTGTATATGTTCAATTGCTG+TGG | + | chr6_1:6317862-6317881 | Msa0871430:CDS | 30.0% | |
| TGTATATGTTCAATTGCTGT+GGG | + | chr6_1:6317863-6317882 | Msa0871430:CDS | 30.0% | |
| !!! | GATATTTTCGGTGTTGAATT+GGG | - | chr6_1:6317916-6317935 | None:intergenic | 30.0% |
| !! | ATGCTTTTTGTGATTATTGC+AGG | + | chr6_1:6318244-6318263 | Msa0871430:intron | 30.0% |
| !! | TGCTTTTTGTGATTATTGCA+GGG | + | chr6_1:6318245-6318264 | Msa0871430:intron | 30.0% |
| TGTTGACAAGAATCTTATTG+AGG | + | chr6_1:6318364-6318383 | Msa0871430:three_prime_UTR | 30.0% | |
| !!! | ATCTTGGGTTTTGGCTATTA+TGG | + | chr6_1:6315749-6315768 | Msa0871430:exon | 35.0% |
| ! | TTTGACAGAAGCTGTTGATT+TGG | + | chr6_1:6315800-6315819 | Msa0871430:CDS | 35.0% |
| ! | GTTTGAAACACTTCCTCAAT+TGG | - | chr6_1:6316123-6316142 | None:intergenic | 35.0% |
| !! | AGGAAGTGTTTCAAACTTTG+AGG | + | chr6_1:6316127-6316146 | Msa0871430:CDS | 35.0% |
| !! | ACTTTGAGGTGTGATTCAAA+TGG | + | chr6_1:6316141-6316160 | Msa0871430:CDS | 35.0% |
| ! | CTTCATATTGAAAGTGTGTC+TGG | + | chr6_1:6316347-6316366 | Msa0871430:intron | 35.0% |
| ACACATGCGATTACATTCAA+CGG | + | chr6_1:6316392-6316411 | Msa0871430:intron | 35.0% | |
| CTAAACATTGACACAACTAC+CGG | - | chr6_1:6316490-6316509 | None:intergenic | 35.0% | |
| TTTATGTGAATCCTCTCTCA+TGG | + | chr6_1:6316631-6316650 | Msa0871430:CDS | 35.0% | |
| TTATGTGAATCCTCTCTCAT+GGG | + | chr6_1:6316632-6316651 | Msa0871430:CDS | 35.0% | |
| CTTTACATTGCAGTGAAATG+CGG | + | chr6_1:6316789-6316808 | Msa0871430:intron | 35.0% | |
| TTATATTGCTACCGCAATTG+TGG | + | chr6_1:6316853-6316872 | Msa0871430:intron | 35.0% | |
| ! | TTTAGAATAAACCACCCGAT+TGG | + | chr6_1:6317015-6317034 | Msa0871430:intron | 35.0% |
| TTCCACAATAAGTTTCATCG+AGG | + | chr6_1:6317076-6317095 | Msa0871430:intron | 35.0% | |
| TTCCTCGATGAAACTTATTG+TGG | - | chr6_1:6317081-6317100 | None:intergenic | 35.0% | |
| !! | GAGATTAACACCTTAGCTTT+TGG | - | chr6_1:6317149-6317168 | None:intergenic | 35.0% |
| ! | TTACTTTGGGTTCCTTAAAC+AGG | + | chr6_1:6317818-6317837 | Msa0871430:intron | 35.0% |
| TTGAAGTTAGGACCTGTTTA+AGG | - | chr6_1:6317833-6317852 | None:intergenic | 35.0% | |
| TAAACAGGTCCTAACTTCAA+TGG | + | chr6_1:6317833-6317852 | Msa0871430:intron | 35.0% | |
| AAACAGGTCCTAACTTCAAT+GGG | + | chr6_1:6317834-6317853 | Msa0871430:intron | 35.0% | |
| CAAAAGTTCCCATTGAAGTT+AGG | - | chr6_1:6317845-6317864 | None:intergenic | 35.0% | |
| !!! | CGATATTTTCGGTGTTGAAT+TGG | - | chr6_1:6317917-6317936 | None:intergenic | 35.0% |
| ACAAGTAGATTATCAATCCC+TGG | - | chr6_1:6317941-6317960 | None:intergenic | 35.0% | |
| AATCTACTTGTGCTTCTCAT+TGG | + | chr6_1:6317950-6317969 | Msa0871430:three_prime_UTR | 35.0% | |
| ATTGTAACTGACAGAACTGT+AGG | - | chr6_1:6317995-6318014 | None:intergenic | 35.0% | |
| TACAGTTCTGTCAGTTACAA+TGG | + | chr6_1:6317994-6318013 | Msa0871430:three_prime_UTR | 35.0% | |
| AATGACAGCAATAGAAGAGA+TGG | + | chr6_1:6318283-6318302 | Msa0871430:three_prime_UTR | 35.0% | |
| ! | AGTAAGTTTTTGTAATGCGG+TGG | + | chr6_1:6318395-6318414 | Msa0871430:intron | 35.0% |
| TTCTGTCAAAACAGCATGCA+TGG | - | chr6_1:6315790-6315809 | None:intergenic | 40.0% | |
| TCAGGAAAATGTGCCAATTG+AGG | + | chr6_1:6316107-6316126 | Msa0871430:intron | 40.0% | |
| CTTTGGTCACAACAAACTTG+AGG | + | chr6_1:6316200-6316219 | Msa0871430:CDS | 40.0% | |
| GTGTTAGTGTCAAAACGAGT+CGG | - | chr6_1:6316376-6316395 | None:intergenic | 40.0% | |
| !! | TGGCTTTATGTCTTCTGTTG+TGG | + | chr6_1:6316572-6316591 | Msa0871430:intron | 40.0% |
| AGCAATCATGGCTATTGCTT+TGG | + | chr6_1:6316668-6316687 | Msa0871430:CDS | 40.0% | |
| !!! | ATGGTTTTAAATTGCGGCTG+TGG | + | chr6_1:6316758-6316777 | Msa0871430:intron | 40.0% |
| AGTGTGTGGATGCACATTAT+AGG | + | chr6_1:6316909-6316928 | Msa0871430:intron | 40.0% | |
| TTCATCGAGGAAAACAATGC+TGG | + | chr6_1:6317089-6317108 | Msa0871430:intron | 40.0% | |
| TGATCCGTTGAAGATTGATC+AGG | + | chr6_1:6317403-6317422 | Msa0871430:CDS | 40.0% | |
| TGCACCTGATCAATCTTCAA+CGG | - | chr6_1:6317410-6317429 | None:intergenic | 40.0% | |
| !!! | CTAAGATTCTGGTTTTCGGA+CGG | + | chr6_1:6317492-6317511 | Msa0871430:intron | 40.0% |
| CCTGAATAAACACTGTCACT+GGG | - | chr6_1:6317563-6317582 | None:intergenic | 40.0% | |
| ! | GAAGCAGTTGTTATTGCAAC+CGG | + | chr6_1:6317608-6317627 | Msa0871430:CDS | 40.0% |
| AGTTCATACCTTCTTTGGCA+AGG | + | chr6_1:6317631-6317650 | Msa0871430:CDS | 40.0% | |
| ! | AAAATGCCCGACTTGATTTG+TGG | - | chr6_1:6317675-6317694 | None:intergenic | 40.0% |
| AACACCGAAAATATCGTCCA+GGG | + | chr6_1:6317921-6317940 | Msa0871430:three_prime_UTR | 40.0% | |
| ! | CAATCCCTGGACGATATTTT+CGG | - | chr6_1:6317928-6317947 | None:intergenic | 40.0% |
| CTGTCAGTTACAATGGCAAT+CGG | + | chr6_1:6318001-6318020 | Msa0871430:three_prime_UTR | 40.0% | |
| TAAGTACTTGTGGGACTCTT+CGG | - | chr6_1:6318173-6318192 | None:intergenic | 40.0% | |
| GTATTGTGCAGTGACAAAAC+TGG | + | chr6_1:6318317-6318336 | Msa0871430:three_prime_UTR | 40.0% | |
| ACTCTCAACAAAAGCTGCTG+AGG | + | chr6_1:6316164-6316183 | Msa0871430:CDS | 45.0% | |
| CAACAAACTTGAGGAGAAGC+AGG | + | chr6_1:6316209-6316228 | Msa0871430:CDS | 45.0% | |
| ! | TCTTCTGTTGTGGCTTTTGC+AGG | + | chr6_1:6316582-6316601 | Msa0871430:intron | 45.0% |
| ATGGCTATTGCTTTGGCCAA+TGG | + | chr6_1:6316675-6316694 | Msa0871430:CDS | 45.0% | |
| TAATGCTGCTGCAGCTCTTA+TGG | + | chr6_1:6317112-6317131 | Msa0871430:intron | 45.0% | |
| GATGCTAGCATTCTTGTTCC+AGG | + | chr6_1:6317320-6317339 | Msa0871430:intron | 45.0% | |
| GCTAGGTGATATTATCCCTG+CGG | + | chr6_1:6317361-6317380 | Msa0871430:intron | 45.0% | |
| ACTTACAGGTGAGTCTCTTC+CGG | + | chr6_1:6317526-6317545 | Msa0871430:CDS | 45.0% | |
| CCCAGTGACAGTGTTTATTC+AGG | + | chr6_1:6317560-6317579 | Msa0871430:CDS | 45.0% | |
| GCCTGAATAAACACTGTCAC+TGG | - | chr6_1:6317564-6317583 | None:intergenic | 45.0% | |
| TTCAGGCTCTACATGCAAAC+AGG | + | chr6_1:6317577-6317596 | Msa0871430:CDS | 45.0% | |
| TCAGGCTCTACATGCAAACA+GGG | + | chr6_1:6317578-6317597 | Msa0871430:CDS | 45.0% | |
| ACCGGAGTTCATACCTTCTT+TGG | + | chr6_1:6317626-6317645 | Msa0871430:CDS | 45.0% | |
| ! | GCCAAAGAAGGTATGAACTC+CGG | - | chr6_1:6317630-6317649 | None:intergenic | 45.0% |
| ! | GTCGACTCCACAAATCAAGT+CGG | + | chr6_1:6317665-6317684 | Msa0871430:CDS | 45.0% |
| TCGACTCCACAAATCAAGTC+GGG | + | chr6_1:6317666-6317685 | Msa0871430:CDS | 45.0% | |
| !!! | GCGTGTTTTTGGTTCTGCAA+CGG | + | chr6_1:6317731-6317750 | Msa0871430:intron | 45.0% |
| CAACACCGAAAATATCGTCC+AGG | + | chr6_1:6317920-6317939 | Msa0871430:three_prime_UTR | 45.0% | |
| CTACTTGTGCTTCTCATTGG+AGG | + | chr6_1:6317953-6317972 | Msa0871430:three_prime_UTR | 45.0% | |
| AGAACTGTAGGCATGGCAAT+AGG | - | chr6_1:6317983-6318002 | None:intergenic | 45.0% | |
| AACTGACAGAACTGTAGGCA+TGG | - | chr6_1:6317990-6318009 | None:intergenic | 45.0% | |
| GGACTCTTCGGGAAAACTTA+TGG | - | chr6_1:6318161-6318180 | None:intergenic | 45.0% | |
| AAGTACTTGTGGGACTCTTC+GGG | - | chr6_1:6318172-6318191 | None:intergenic | 45.0% | |
| GACAGCAATAGAAGAGATGG+CGG | + | chr6_1:6318286-6318305 | Msa0871430:three_prime_UTR | 45.0% | |
| ACAGCAATAGAAGAGATGGC+GGG | + | chr6_1:6318287-6318306 | Msa0871430:three_prime_UTR | 45.0% | |
| !! | AATAGAAGAGATGGCGGGTA+TGG | + | chr6_1:6318292-6318311 | Msa0871430:three_prime_UTR | 45.0% |
| !! | AGCATCTTGGTTTTCCACTC+TGG | - | chr6_1:6318533-6318552 | None:intergenic | 45.0% |
| CAACAAAAGCTGCTGAGGAG+AGG | + | chr6_1:6316169-6316188 | Msa0871430:CDS | 50.0% | |
| AAAAGCTGCTGAGGAGAGGT+TGG | + | chr6_1:6316173-6316192 | Msa0871430:CDS | 50.0% | |
| ! | GAGGAGAGGTTGGCTATCTT+TGG | + | chr6_1:6316183-6316202 | Msa0871430:CDS | 50.0% |
| GTCAGTGTCAGTGTCATGTC+CGG | + | chr6_1:6316468-6316487 | Msa0871430:intron | 50.0% | |
| GAATCCTCTCTCATGGGTGA+TGG | + | chr6_1:6316638-6316657 | Msa0871430:CDS | 50.0% | |
| GATGGAAGCTGCAGCAATCA+TGG | + | chr6_1:6316656-6316675 | Msa0871430:CDS | 50.0% | |
| GCTATTGCTTTGGCCAATGG+AGG | + | chr6_1:6316678-6316697 | Msa0871430:CDS | 50.0% | |
| TCGGAAGCTTACTCCTCCAT+TGG | - | chr6_1:6316694-6316713 | None:intergenic | 50.0% | |
| ACCGACGAAGTCTTGCCAAT+CGG | - | chr6_1:6317033-6317052 | None:intergenic | 50.0% | |
| TCGCTTAGCGCCAAAAGCTA+AGG | + | chr6_1:6317136-6317155 | Msa0871430:intron | 50.0% | |
| AGGTTCTTCGAGATGGGAGA+TGG | + | chr6_1:6317288-6317307 | Msa0871430:intron | 50.0% | |
| GGTTCTTCGAGATGGGAGAT+GGG | + | chr6_1:6317289-6317308 | Msa0871430:intron | 50.0% | |
| CAAGTAAACGAGCATCCGCA+GGG | - | chr6_1:6317379-6317398 | None:intergenic | 50.0% | |
| TCAAGTAAACGAGCATCCGC+AGG | - | chr6_1:6317380-6317399 | None:intergenic | 50.0% | |
| GCGGATGCTCGTTTACTTGA+AGG | + | chr6_1:6317380-6317399 | Msa0871430:CDS | 50.0% | |
| CGGTTGTAGTCTGCACTTAC+AGG | + | chr6_1:6317512-6317531 | Msa0871430:intron | 50.0% | |
| ATGAGCAGCCTTGCCAAAGA+AGG | - | chr6_1:6317642-6317661 | None:intergenic | 50.0% | |
| ! | TCAAGTCGGGCATTTTCAGC+AGG | + | chr6_1:6317679-6317698 | Msa0871430:CDS | 50.0% |
| TGTCTACCTGCTGAGCTAAG+CGG | - | chr6_1:6318033-6318052 | None:intergenic | 50.0% | |
| CGCAGATACCGTTGTTCTCA+TGG | + | chr6_1:6318495-6318514 | Msa0871430:three_prime_UTR | 50.0% | |
| GCTTCCATCACCCATGAGAG+AGG | - | chr6_1:6316645-6316664 | None:intergenic | 55.0% | |
| ACGAAGTCTTGCCAATCGGG+TGG | - | chr6_1:6317029-6317048 | None:intergenic | 55.0% | |
| CCGACGAAGTCTTGCCAATC+GGG | - | chr6_1:6317032-6317051 | None:intergenic | 55.0% | |
| CCCGATTGGCAAGACTTCGT+CGG | + | chr6_1:6317029-6317048 | Msa0871430:CDS | 55.0% | |
| TCTTCGAGATGGGAGATGGG+TGG | + | chr6_1:6317292-6317311 | Msa0871430:intron | 55.0% | |
| GAGTCTCTTCCGGTCACGAA+AGG | + | chr6_1:6317536-6317555 | Msa0871430:CDS | 55.0% | |
| TCACTGGGACCTTTCGTGAC+CGG | - | chr6_1:6317548-6317567 | None:intergenic | 55.0% | |
| ATCACACCGCTTAGCTCAGC+AGG | + | chr6_1:6318024-6318043 | Msa0871430:three_prime_UTR | 55.0% | |
| CCGAGCAGCCATGAGAACAA+CGG | - | chr6_1:6318506-6318525 | None:intergenic | 55.0% | |
| CCGTTGTTCTCATGGCTGCT+CGG | + | chr6_1:6318503-6318522 | Msa0871430:three_prime_UTR | 55.0% | |
| CGTTGTTCTCATGGCTGCTC+GGG | + | chr6_1:6318504-6318523 | Msa0871430:three_prime_UTR | 55.0% | |
| TCGAGATGGGAGATGGGTGG+AGG | + | chr6_1:6317295-6317314 | Msa0871430:intron | 60.0% | |
| GGCTGCTCGGGCTTCCAGAG+TGG | + | chr6_1:6318516-6318535 | Msa0871430:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6315663 | 6318562 | 6315663 | ID=Msa0871430;Name=Msa0871430 |
| chr6_1 | mRNA | 6315663 | 6318562 | 6315663 | ID=Msa0871430-mRNA-1;Parent=Msa0871430;Name=Msa0871430-mRNA-1;_AED=0.43;_eAED=0.43;_QI=105|0.75|0.55|1|0.75|0.44|9|363|207 |
| chr6_1 | exon | 6315663 | 6315821 | 6315663 | ID=Msa0871430-mRNA-1:exon:1996;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6316111 | 6316230 | 6316111 | ID=Msa0871430-mRNA-1:exon:1997;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6316609 | 6316701 | 6316609 | ID=Msa0871430-mRNA-1:exon:1998;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6317020 | 6317086 | 6317020 | ID=Msa0871430-mRNA-1:exon:1999;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6317366 | 6317424 | 6317366 | ID=Msa0871430-mRNA-1:exon:2000;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6317521 | 6317700 | 6317521 | ID=Msa0871430-mRNA-1:exon:2001;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6317840 | 6318045 | 6317840 | ID=Msa0871430-mRNA-1:exon:2002;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6318266 | 6318385 | 6318266 | ID=Msa0871430-mRNA-1:exon:2003;Parent=Msa0871430-mRNA-1 |
| chr6_1 | exon | 6318475 | 6318562 | 6318475 | ID=Msa0871430-mRNA-1:exon:2004;Parent=Msa0871430-mRNA-1 |
| chr6_1 | five_prime_UTR | 6315663 | 6315767 | 6315663 | ID=Msa0871430-mRNA-1:five_prime_utr;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6315768 | 6315821 | 6315768 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6316111 | 6316230 | 6316111 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6316609 | 6316701 | 6316609 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6317020 | 6317086 | 6317020 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6317366 | 6317424 | 6317366 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6317521 | 6317700 | 6317521 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | CDS | 6317840 | 6317890 | 6317840 | ID=Msa0871430-mRNA-1:cds;Parent=Msa0871430-mRNA-1 |
| chr6_1 | three_prime_UTR | 6317891 | 6318045 | 6317891 | ID=Msa0871430-mRNA-1:three_prime_utr;Parent=Msa0871430-mRNA-1 |
| chr6_1 | three_prime_UTR | 6318266 | 6318385 | 6318266 | ID=Msa0871430-mRNA-1:three_prime_utr;Parent=Msa0871430-mRNA-1 |
| chr6_1 | three_prime_UTR | 6318475 | 6318562 | 6318475 | ID=Msa0871430-mRNA-1:three_prime_utr;Parent=Msa0871430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
