AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936640 MtrunA17_Chr6g0452721 82.641 939 12 5 1 788 1 939 0.0 1526
Msa0936640 MtrunA17_Chr4g0059961 74.493 937 88 5 3 788 5 941 0.0 1365
Msa0936640 MtrunA17_Chr4g0072131 65.208 937 168 7 4 788 5 935 0.0 1209
Msa0936640 MtrunA17_Chr1g0148031 65.632 934 165 7 7 788 5 934 0.0 1192
Msa0936640 MtrunA17_Chr3g0138931 64.668 934 174 7 7 788 5 934 0.0 1182
Msa0936640 MtrunA17_Chr2g0333721 64.941 927 169 7 14 788 10 932 0.0 1177
Msa0936640 MtrunA17_Chr2g0298031 64.637 936 173 8 7 788 10 941 0.0 1168
Msa0936640 MtrunA17_Chr8g0335291 64.910 949 170 9 1 787 1 948 0.0 1157
Msa0936640 MtrunA17_Chr4g0065481 64.509 927 171 7 13 788 12 931 0.0 1155
Msa0936640 MtrunA17_Chr1g0147981 64.425 922 173 6 18 788 33 950 0.0 1148
Msa0936640 MtrunA17_Chr8g0365021 62.776 951 175 6 13 788 81 1027 0.0 1139
Msa0936640 MtrunA17_Chr2g0304941 64.545 880 157 6 14 742 13 888 0.0 1103
Msa0936640 MtrunA17_Chr7g0276551 61.803 699 155 8 193 788 6 695 0.0 842
Msa0936640 MtrunA17_Chr7g0276541 56.225 249 46 3 14 201 19 265 1.77e-79 257
Msa0936640 MtrunA17_Chr3g0134951 28.090 356 213 10 321 633 493 848 4.83e-28 121
Msa0936640 MtrunA17_Chr5g0413881 63.636 77 27 1 303 378 6 82 8.91e-25 100
Msa0936640 MtrunA17_Chr8g0381711 21.379 725 438 24 115 713 158 876 5.31e-22 102
Msa0936640 MtrunA17_Chr5g0423831 50.000 92 39 1 303 394 55 139 1.38e-21 94.4
Msa0936640 MtrunA17_Chr7g0263361 31.970 269 152 8 394 633 626 892 9.17e-21 98.2
Msa0936640 MtrunA17_Chr8g0346461 31.071 280 150 7 394 638 619 890 9.53e-21 98.2
Msa0936640 MtrunA17_Chr6g0474841 47.826 92 41 1 303 394 55 139 3.00e-20 90.5
Msa0936640 MtrunA17_Chr4g0054021 25.773 291 185 7 298 559 461 749 4.70e-20 95.9
Msa0936640 MtrunA17_Chr1g0181471 67.925 53 17 0 367 419 29 81 1.28e-17 78.6
Msa0936640 MtrunA17_Chr7g0260401 24.776 335 189 14 292 573 544 868 5.53e-17 85.9
Msa0936640 MtrunA17_Chr4g0020551 23.723 274 173 7 314 555 488 757 6.22e-17 85.5
Msa0936640 MtrunA17_Chr8g0382071 24.399 291 187 8 296 555 534 822 1.08e-16 85.1
Msa0936640 MtrunA17_Chr5g0401211 25.436 287 183 8 298 555 538 822 1.55e-16 84.3
Msa0936640 MtrunA17_Chr8g0340261 23.973 292 172 10 315 562 93 378 4.56e-16 82.0
Msa0936640 MtrunA17_Chr3g0134771 26.370 292 173 11 298 555 541 824 7.70e-16 82.4
Msa0936640 MtrunA17_Chr1g0173111 23.427 286 189 8 298 555 536 819 7.42e-15 79.0
Msa0936640 MtrunA17_Chr8g0374331 29.947 187 110 4 393 576 41 209 3.10e-14 73.6
Msa0936640 MtrunA17_Chr8g0374391 29.947 187 110 4 393 576 34 202 3.17e-14 73.2
Msa0936640 MtrunA17_Chr2g0298871 23.906 297 176 10 303 555 584 874 7.84e-14 75.9
Msa0936640 MtrunA17_Chr6g0456201 22.742 299 167 11 315 562 541 826 9.84e-14 75.5
Msa0936640 MtrunA17_Chr4g0002331 23.891 293 178 11 304 555 599 887 1.48e-13 74.7
Msa0936640 MtrunA17_Chr2g0297051 38.710 93 57 0 463 555 874 966 1.95e-12 71.2
Msa0936640 MtrunA17_Chr5g0397621 34.375 128 73 3 452 576 741 860 2.08e-12 70.9
Msa0936640 MtrunA17_Chr8g0355421 22.545 275 186 9 315 562 547 821 3.19e-12 70.5
Msa0936640 MtrunA17_Chr8g0339181 37.815 119 67 3 462 576 811 926 4.92e-12 69.7
Msa0936640 MtrunA17_Chr4g0052521 36.559 93 59 0 463 555 842 934 2.81e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936640 AT5G62670.1 74.015 939 93 5 1 788 1 939 0.0 1367
Msa0936640 AT3G47950.1 73.639 937 96 5 3 788 7 943 0.0 1354
Msa0936640 AT3G47950.2 73.639 937 96 5 3 788 7 943 0.0 1354
Msa0936640 AT3G42640.1 65.551 926 161 8 14 788 13 931 0.0 1189
Msa0936640 AT2G07560.1 65.011 926 167 8 14 788 13 932 0.0 1185
Msa0936640 AT2G18960.1 66.167 934 160 7 7 788 3 932 0.0 1183
Msa0936640 AT4G30190.1 65.846 934 163 7 7 788 3 932 0.0 1182
Msa0936640 AT5G57350.4 64.989 934 171 7 7 788 4 933 0.0 1181
Msa0936640 AT5G57350.2 64.989 934 171 7 7 788 4 933 0.0 1181
Msa0936640 AT5G57350.1 64.989 934 171 7 7 788 4 933 0.0 1181
Msa0936640 AT3G60330.4 63.694 942 178 9 6 787 5 942 0.0 1176
Msa0936640 AT3G60330.3 63.694 942 178 9 6 787 5 942 0.0 1176
Msa0936640 AT2G24520.2 63.821 937 183 7 4 788 45 977 0.0 1176
Msa0936640 AT3G60330.2 63.482 942 180 9 6 787 5 942 0.0 1173
Msa0936640 AT3G60330.1 63.482 942 180 9 6 787 5 942 0.0 1173
Msa0936640 AT2G24520.3 64.488 918 170 7 23 788 1 914 0.0 1167
Msa0936640 AT2G24520.1 64.488 918 170 7 23 788 1 914 0.0 1167
Msa0936640 AT4G30190.2 63.599 967 163 8 7 788 3 965 0.0 1164
Msa0936640 AT1G80660.1 63.578 939 186 7 2 788 3 937 0.0 1159
Msa0936640 AT1G80660.4 63.215 927 185 7 2 776 3 925 0.0 1135
Msa0936640 AT1G80660.3 63.215 927 185 7 2 776 3 925 0.0 1135
Msa0936640 AT2G18960.3 66.628 872 135 7 69 788 1 868 0.0 1103
Msa0936640 AT2G18960.2 66.628 872 135 7 69 788 1 868 0.0 1103
Msa0936640 AT1G80660.2 66.837 784 153 6 108 788 29 808 0.0 1044
Msa0936640 AT1G17260.1 58.423 926 221 9 14 788 18 930 0.0 1025
Msa0936640 AT5G57350.3 64.741 675 131 6 217 788 1 671 0.0 863
Msa0936640 AT2G24520.4 64.889 675 130 6 217 788 1 671 0.0 856
Msa0936640 AT4G11730.1 46.164 756 275 20 17 702 17 710 0.0 554
Msa0936640 AT1G10130.1 29.032 372 212 11 308 633 482 847 5.91e-32 134
Msa0936640 AT4G00900.2 28.321 399 207 14 308 638 499 886 5.37e-24 108
Msa0936640 AT4G00900.1 28.321 399 207 14 308 638 499 886 5.37e-24 108
Msa0936640 AT1G07810.1 27.907 387 223 12 308 638 504 890 2.10e-22 103
Msa0936640 AT1G07670.2 28.571 392 214 12 308 638 504 890 2.96e-22 103
Msa0936640 AT1G07670.1 28.571 392 214 12 308 638 504 890 2.96e-22 103
Msa0936640 AT1G27770.3 26.644 289 177 9 298 555 478 762 4.97e-19 92.8
Msa0936640 AT1G27770.4 26.644 289 177 9 298 555 541 825 5.99e-19 92.8
Msa0936640 AT1G27770.1 26.644 289 177 9 298 555 541 825 5.99e-19 92.8
Msa0936640 AT2G22950.1 24.658 292 180 9 298 555 538 823 6.62e-19 92.4
Msa0936640 AT4G37640.1 23.288 292 184 9 298 555 537 822 2.46e-18 90.9
Msa0936640 AT4G29900.1 24.653 288 171 10 310 555 573 856 1.71e-15 81.6
Msa0936640 AT4G29900.2 24.653 288 171 10 310 555 573 856 1.71e-15 81.6
Msa0936640 AT1G63440.1 31.937 191 101 6 393 576 786 954 2.25e-15 81.3
Msa0936640 AT5G21930.2 22.201 518 309 16 115 572 363 846 5.46e-15 79.7
Msa0936640 AT5G21930.1 22.201 518 309 16 115 572 363 846 5.46e-15 79.7
Msa0936640 AT3G22910.1 23.810 294 174 10 310 562 538 822 6.46e-15 79.7
Msa0936640 AT3G57330.2 24.444 270 172 8 314 555 493 758 1.23e-14 78.6
Msa0936640 AT3G63380.1 26.148 283 168 12 315 562 550 826 1.39e-14 78.6
Msa0936640 AT3G57330.1 24.126 286 185 8 298 555 532 813 1.47e-14 78.6
Msa0936640 AT2G41560.2 24.221 289 181 9 298 555 433 714 2.15e-14 77.8
Msa0936640 AT2G41560.3 24.221 289 181 9 298 555 433 714 2.15e-14 77.8
Msa0936640 AT2G41560.4 24.221 289 181 9 298 555 433 714 2.15e-14 77.8
Msa0936640 AT5G57110.1 23.810 315 188 11 303 573 563 869 3.75e-14 77.4
Msa0936640 AT5G57110.3 23.810 315 188 11 303 573 563 869 3.75e-14 77.4
Msa0936640 AT5G57110.2 23.810 315 188 11 303 573 563 869 3.75e-14 77.4
Msa0936640 AT2G41560.1 23.427 286 187 7 298 555 535 816 3.88e-14 77.0
Msa0936640 AT5G44790.1 27.778 234 131 8 347 575 764 964 1.34e-12 72.0
Msa0936640 AT5G21930.3 34.234 111 64 3 467 572 717 823 1.81e-11 68.6
Msa0936640 AT3G21180.1 22.727 308 181 12 294 555 573 869 7.32e-11 66.6
Msa0936640 AT5G53010.1 23.183 289 192 10 294 555 573 858 9.43e-11 66.2

Find 187 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTCTTGGTGGTTATT+TGG 0.154593 6_3:+7503605 Msa0936640:CDS
TTTACAAGGAAGAAAGATTT+TGG 0.160060 6_3:+7505106 Msa0936640:intron
GCTATAGATGCTGCTATTAT+AGG 0.211642 6_3:+7500798 Msa0936640:CDS
AGATAAAAGTATACCTCTTT+TGG 0.221054 6_3:-7500834 None:intergenic
CTGTGTAATTCTTCATTCTT+TGG 0.231219 6_3:-7502697 None:intergenic
CAATTCCTTCATCCTTGTTC+TGG 0.245244 6_3:-7502114 None:intergenic
AGGAAGAACGTGAACTTAAA+TGG 0.268903 6_3:+7505131 Msa0936640:CDS
ACCGGAGTTCATACCTTCTT+TGG 0.270815 6_3:+7499872 Msa0936640:CDS
TTTACCACTGGAATAATTCT+TGG 0.289655 6_3:+7503594 Msa0936640:CDS
GAGGAGAGGTTGGCTATCTT+TGG 0.289972 6_3:+7498425 Msa0936640:CDS
AGCATTAAAATCTTGGGTTT+TGG 0.302407 6_3:+7497977 Msa0936640:five_prime_UTR
AAACAGGTCCTAACTTCAAT+TGG 0.308835 6_3:+7500081 Msa0936640:intron
CCCAGTGACAGTGTTTATTC+AGG 0.322417 6_3:+7499806 Msa0936640:CDS
GCTCTTAAGAAAGCAGATAT+TGG 0.323411 6_3:+7502563 Msa0936640:CDS
ACTTTGCAGCATTAAAATCT+TGG 0.328550 6_3:+7497970 Msa0936640:five_prime_UTR
TCTGCCAGCTTCCAGCTATC+TGG 0.329894 6_3:-7503567 None:intergenic
GTGACCGCGTTACAAATATA+AGG 0.333271 6_3:-7504036 None:intergenic
ACAGCTTGGTTTCATGTTAC+TGG 0.335735 6_3:+7502922 Msa0936640:intron
CGGTTGTAGTCTGCACTTAC+AGG 0.336796 6_3:+7499758 Msa0936640:intron
GTTTGAAACACTTCCTCAAT+TGG 0.340289 6_3:-7498362 None:intergenic
TACAATTATGACAATATCTA+AGG 0.346291 6_3:+7503521 Msa0936640:CDS
AAAAGTTCCCAATTGAAGTT+AGG 0.347133 6_3:-7500089 None:intergenic
AGCTTCCAGCTATCTGGATA+TGG 0.370436 6_3:-7503561 None:intergenic
TGGCTTTCTTTCTTTCCATC+AGG 0.370843 6_3:-7501747 None:intergenic
TTCAGGCTCTACATGCAAAC+AGG 0.371019 6_3:+7499823 Msa0936640:CDS
CGTATTGAGTGGCCGGGCTT+GGG 0.380554 6_3:+7504794 Msa0936640:CDS
GGAAGACCTTGGCAGTTTAT+CGG 0.380792 6_3:+7501771 Msa0936640:CDS
ACGTATTGAGTGGCCGGGCT+TGG 0.383152 6_3:+7504793 Msa0936640:CDS
AATCTACTTGTGCTTCTCAT+TGG 0.384442 6_3:+7500198 Msa0936640:CDS
TCATGTTACTGGCACTCATA+TGG 0.386168 6_3:+7502933 Msa0936640:CDS
TACCCTTCATCAGCTTTATT+AGG 0.388189 6_3:+7502091 Msa0936640:CDS
AGCAATCATGGCTATTGCTT+TGG 0.388777 6_3:+7498911 Msa0936640:CDS
GCGGATGCTCGTTTACTTGA+AGG 0.400028 6_3:+7499624 Msa0936640:CDS
CTTTGCAGCATTAAAATCTT+GGG 0.400175 6_3:+7497971 Msa0936640:five_prime_UTR
CCGTTGTTCTCATGGCTGCT+CGG 0.401363 6_3:+7500751 Msa0936640:CDS
GAAGCAGTTGTTATTGCAAC+CGG 0.405843 6_3:+7499854 Msa0936640:CDS
CTATAGATGCTGCTATTATA+GGG 0.408529 6_3:+7500799 Msa0936640:CDS
TGTCTAGGTGGGTCGAATAA+AGG 0.409705 6_3:-7501801 None:intergenic
CGCAGATACCGTTGTTCTCA+TGG 0.409745 6_3:+7500743 Msa0936640:CDS
TTTGACAGAAGCTGTTGATT+TGG 0.418241 6_3:+7498037 Msa0936640:CDS
GAAGACCTTGGCAGTTTATC+GGG 0.419371 6_3:+7501772 Msa0936640:CDS
GACTAATTGTACTAACTTGA+AGG 0.420483 6_3:-7504009 None:intergenic
CAGAACAAGGATGAAGGAAT+TGG 0.430435 6_3:+7502115 Msa0936640:CDS
ATTATTGCTATTCTTAATGA+TGG 0.431040 6_3:+7502986 Msa0936640:CDS
TCGTGAAACGTTTGCAAGCT+AGG 0.431221 6_3:+7502495 Msa0936640:CDS
CATGCGCAGAGGACACTTCA+TGG 0.439563 6_3:+7505157 Msa0936640:CDS
GCCTGAATAAACACTGTCAC+TGG 0.440032 6_3:-7499807 None:intergenic
TCAAGTTAGTACAATTAGTC+AGG 0.440616 6_3:+7504012 Msa0936640:CDS
CCGCTTGTCAGTAGGATTGA+AGG 0.441619 6_3:-7501361 None:intergenic
TCGCTGAACATCTTGGTCTC+TGG 0.452631 6_3:-7505190 None:intergenic
CCGACGAAGTCTTGCCAATC+GGG 0.455072 6_3:-7499272 None:intergenic
CGTTGTTCTCATGGCTGCTC+GGG 0.455110 6_3:+7500752 Msa0936640:CDS
TCTTTGGAATATTGCTCGAC+TGG 0.456373 6_3:-7502681 None:intergenic
AAAATGCCCGACTTGATTTG+TGG 0.456751 6_3:-7499918 None:intergenic
TATAAGAGATATTCACATAA+AGG 0.461843 6_3:+7497942 Msa0936640:five_prime_UTR
AACAGGTCCTAACTTCAATT+GGG 0.464044 6_3:+7500082 Msa0936640:intron
CTATCAATAGCGAAAGAAAC+AGG 0.465607 6_3:+7502040 Msa0936640:CDS
ATCACACCGCTTAGCTCAGC+AGG 0.468037 6_3:+7500272 Msa0936640:CDS
CTACTTGTGCTTCTCATTGG+AGG 0.470393 6_3:+7500201 Msa0936640:CDS
TTCGATACGTATTGAGTGGC+CGG 0.472313 6_3:+7504787 Msa0936640:CDS
TTGTAACGCGGTCACGGAGC+TGG 0.472572 6_3:+7504044 Msa0936640:CDS
ATGGCTATTGCTTTGGCCAA+TGG 0.472871 6_3:+7498918 Msa0936640:CDS
TGTGCGTTCGCTGAACATCT+TGG 0.474953 6_3:-7505197 None:intergenic
AGGAAGTGTTTCAAACTTTG+AGG 0.475521 6_3:+7498369 Msa0936640:CDS
GGAAGAACGTGAACTTAAAT+GGG 0.475742 6_3:+7505132 Msa0936640:CDS
GATGGAAGCTGCAGCAATCA+TGG 0.476351 6_3:+7498899 Msa0936640:CDS
TCAAATCATCAACTGGTAAG+AGG 0.477216 6_3:-7502138 None:intergenic
TTATGTGGAATCCTCTCTCA+TGG 0.477803 6_3:+7498874 Msa0936640:CDS
TAGCAGCATCTATAGCATCT+TGG 0.482236 6_3:-7500791 None:intergenic
ATCGATAAATTTGCCGAGCG+AGG 0.483664 6_3:+7501589 Msa0936640:CDS
TAAACTGCCAAGGTCTTCCT+TGG 0.485975 6_3:-7501767 None:intergenic
ATATCTGCTTTCTTAAGAGC+AGG 0.486559 6_3:-7502560 None:intergenic
AGAACTGTAGGCATGGCAAT+AGG 0.487318 6_3:-7500228 None:intergenic
ACCGACGAAGTCTTGCCAAT+CGG 0.487944 6_3:-7499273 None:intergenic
TGACCGCGTTACAAATATAA+GGG 0.488531 6_3:-7504035 None:intergenic
GCAATAATCAGTACCATGAA+TGG 0.491716 6_3:-7502971 None:intergenic
GTCTCTTGCTGTAGCCTACC+AGG 0.493769 6_3:+7501618 Msa0936640:CDS
AAAGAAACAGGACGCCGTCT+AGG 0.493787 6_3:+7502052 Msa0936640:CDS
TTCTGTCAAAACAGCATGCA+TGG 0.493950 6_3:-7498024 None:intergenic
TTATATTTGTAACGCGGTCA+CGG 0.495775 6_3:+7504038 Msa0936640:CDS
AACAGGACGCCGTCTAGGAA+TGG 0.496195 6_3:+7502057 Msa0936640:CDS
ACAGGACGCCGTCTAGGAAT+GGG 0.500151 6_3:+7502058 Msa0936640:CDS
CAGCAAAGGTGCACCAGAGC+AGG 0.500208 6_3:+7501428 Msa0936640:CDS
TCAGGAAAATGTGCCAATTG+AGG 0.501745 6_3:+7498349 Msa0936640:intron
ACCACTGGAATAATTCTTGG+TGG 0.502720 6_3:+7503597 Msa0936640:CDS
CTGAACATCTTGGTCTCTGG+CGG 0.504462 6_3:-7505187 None:intergenic
TCCGAAAATTAGGCAAGGGC+TGG 0.508108 6_3:+7501315 Msa0936640:intron
TCGGAAGCTTACTCCTCCAT+TGG 0.510345 6_3:-7498934 None:intergenic
AAGTCTTCAGAAAGAGGATA+GGG 0.511532 6_3:+7503955 Msa0936640:CDS
AAAAGCTGCTGAGGAGAGGT+TGG 0.514396 6_3:+7498415 Msa0936640:CDS
TCGATAAATTTGCCGAGCGA+GGG 0.514954 6_3:+7501590 Msa0936640:CDS
TTATGACAATATCTAAGGAT+AGG 0.519708 6_3:+7503526 Msa0936640:CDS
TGGCCTAATAAAGCTGATGA+AGG 0.520382 6_3:-7502094 None:intergenic
CTGTCAGTTACAATGGCAAT+CGG 0.520728 6_3:+7500249 Msa0936640:CDS
TATGACAATATCTAAGGATA+GGG 0.529726 6_3:+7503527 Msa0936640:CDS
CAAGTCTTCAGAAAGAGGAT+AGG 0.529848 6_3:+7503954 Msa0936640:CDS
CTATATAACTTACTACAATA+CGG 0.532473 6_3:-7502831 None:intergenic
TCAAGTAAACGAGCATCCGC+AGG 0.533069 6_3:-7499621 None:intergenic
ACTTTGAGGTGTGATTCAAA+TGG 0.534258 6_3:+7498383 Msa0936640:CDS
CATCTCCATATCCAGATAGC+TGG 0.535373 6_3:+7503556 Msa0936640:CDS
TGATCCGTTGAAGATTGATC+AGG 0.537179 6_3:+7499647 Msa0936640:CDS
AAGAGACCGCAACCCTCGCT+CGG 0.537570 6_3:-7501602 None:intergenic
TGTATATGTTCAATTGCTGT+GGG 0.538145 6_3:+7500111 Msa0936640:CDS
CAGCTATCTGGATATGGAGA+TGG 0.538271 6_3:-7503555 None:intergenic
CGCTTGTCAGTAGGATTGAA+GGG 0.540375 6_3:-7501360 None:intergenic
TTAGGCCAGAACAAGGATGA+AGG 0.541544 6_3:+7502109 Msa0936640:CDS
TCAACACCGAAAATATCGTC+CGG 0.541752 6_3:+7500167 Msa0936640:CDS
AGTTCATACCTTCTTTGGCA+AGG 0.542004 6_3:+7499877 Msa0936640:CDS
GAATCCTCTCTCATGGGTGA+TGG 0.543395 6_3:+7498881 Msa0936640:CDS
TTGTATATGTTCAATTGCTG+TGG 0.544457 6_3:+7500110 Msa0936640:CDS
TTTAGAATAAACCACCCGAT+TGG 0.545064 6_3:+7499258 Msa0936640:intron
ATGAGCAGCCTTGCCAAAGA+AGG 0.546678 6_3:-7499885 None:intergenic
ACTTACAGGTGAGTCTCTTC+CGG 0.546957 6_3:+7499772 Msa0936640:CDS
TGAACATCTTGGTCTCTGGC+GGG 0.548033 6_3:-7505186 None:intergenic
TCGACTCCACAAATCAAGTC+GGG 0.549673 6_3:+7499912 Msa0936640:CDS
CAACACCGAAAATATCGTCC+GGG 0.550253 6_3:+7500168 Msa0936640:CDS
AGTATCAAGTCTTCAGAAAG+AGG 0.550795 6_3:+7503949 Msa0936640:CDS
CAACAAACTTGAGGAGAAGC+AGG 0.550958 6_3:+7498451 Msa0936640:CDS
GATAAGAAAGATACCTGCTC+TGG 0.552393 6_3:-7501441 None:intergenic
TAGAGAGTTGCACACACTCA+AGG 0.554758 6_3:+7505462 Msa0936640:CDS
GCTGCTATTATAGGGATGCT+AGG 0.555095 6_3:+7500807 Msa0936640:CDS
ATATCCAGATAGCTGGAAGC+TGG 0.555818 6_3:+7503563 Msa0936640:CDS
TTCCTCGATGAAACTTATTG+TGG 0.558619 6_3:-7499321 None:intergenic
ATTTCTCAGGAAGTTCCTGA+TGG 0.561899 6_3:+7501732 Msa0936640:intron
AAGAAAGCCAAGGAAGACCT+TGG 0.569690 6_3:+7501760 Msa0936640:CDS
TCGATACGTATTGAGTGGCC+GGG 0.570565 6_3:+7504788 Msa0936640:CDS
GTCTCTGCACTATCATGTCT+AGG 0.570571 6_3:-7501816 None:intergenic
GCTATTGCTTTGGCCAATGG+AGG 0.574253 6_3:+7498921 Msa0936640:CDS
TACAGTTCTGTCAGTTACAA+TGG 0.576813 6_3:+7500242 Msa0936640:CDS
CTGCACTATCATGTCTAGGT+GGG 0.578575 6_3:-7501812 None:intergenic
CAAGCTAGGAAACACATATG+TGG 0.579952 6_3:+7502509 Msa0936640:CDS
TTATACAGAGCTTAATCAGA+TGG 0.582493 6_3:+7505222 Msa0936640:CDS
AGCATCATTAACACCATCAC+CGG 0.586529 6_3:-7502537 None:intergenic
CCTGAATAAACACTGTCACT+GGG 0.587779 6_3:-7499806 None:intergenic
TCTGCACTATCATGTCTAGG+TGG 0.589479 6_3:-7501813 None:intergenic
AGAGCTGTCCGCTTGTCAGT+AGG 0.589819 6_3:-7501369 None:intergenic
GACATTGTTCTAACAGAACC+AGG 0.590210 6_3:+7502629 Msa0936640:CDS
CTTTGGTCACAACAAACTTG+AGG 0.591192 6_3:+7498442 Msa0936640:CDS
CAACAAAAGCTGCTGAGGAG+AGG 0.592632 6_3:+7498411 Msa0936640:CDS
GGCTGCTCGGGCTTCCAGAG+TGG 0.595254 6_3:+7500764 Msa0936640:CDS
CAAGGGCCATGTTGAGTCAG+TGG 0.596777 6_3:+7505480 Msa0936640:CDS
GAGTCTCTTCCGGTCACGAA+AGG 0.597950 6_3:+7499782 Msa0936640:CDS
GCCAAAGAAGGTATGAACTC+CGG 0.600679 6_3:-7499873 None:intergenic
AAACACATATGTGGAATGAC+CGG 0.600729 6_3:+7502518 Msa0936640:CDS
AGCTTTATTAGGCCAGAACA+AGG 0.601027 6_3:+7502102 Msa0936640:CDS
AGAGAGTTGCACACACTCAA+GGG 0.602510 6_3:+7505463 Msa0936640:CDS
ACAAGTAGATTATCAATCCC+CGG 0.602687 6_3:-7500186 None:intergenic
GGCAAGGGCTGGTATTCAAG+AGG 0.604638 6_3:+7501326 Msa0936640:intron
ATTGTAACTGACAGAACTGT+AGG 0.607606 6_3:-7500240 None:intergenic
ACTCTCAACAAAAGCTGCTG+AGG 0.609053 6_3:+7498406 Msa0936640:CDS
AACTGACAGAACTGTAGGCA+TGG 0.609587 6_3:-7500235 None:intergenic
TTCTAACCACTGACTCAACA+TGG 0.609744 6_3:-7505486 None:intergenic
GATGCTAGGTGATCCAAAAG+AGG 0.610581 6_3:+7500821 Msa0936640:CDS
GTCGACTCCACAAATCAAGT+CGG 0.610771 6_3:+7499911 Msa0936640:CDS
CTGGCAGAGATATTTACCAC+TGG 0.610974 6_3:+7503582 Msa0936640:CDS
GGCCTAATAAAGCTGATGAA+GGG 0.611297 6_3:-7502093 None:intergenic
ATAATCAGTACCATGAATGG+TGG 0.613663 6_3:-7502968 None:intergenic
TATGTGGAATCCTCTCTCAT+GGG 0.616529 6_3:+7498875 Msa0936640:CDS
AAAGACGAGCGGAAATTGCA+AGG 0.616819 6_3:+7505257 Msa0936640:CDS
AAAATGCATCGTGTCAGCAA+AGG 0.617045 6_3:+7501414 Msa0936640:CDS
TGCACCTGATCAATCTTCAA+CGG 0.622286 6_3:-7499651 None:intergenic
AACTTGAAGGTATATTGCTG+AGG 0.623813 6_3:-7503996 None:intergenic
TGTTAGTTCCCATTCCTAGA+CGG 0.624630 6_3:-7502066 None:intergenic
TATTGCTCGACTGGTCAGCA+CGG 0.628408 6_3:-7502672 None:intergenic
GCTTCCATCACCCATGAGAG+AGG 0.629828 6_3:-7498885 None:intergenic
AATTTGCCGAGCGAGGGTTG+CGG 0.634870 6_3:+7501596 Msa0936640:CDS
CCTTCAATCCTACTGACAAG+CGG 0.635026 6_3:+7501361 Msa0936640:CDS
TGGTTCTGTTAGAACAATGT+CGG 0.638365 6_3:-7502627 None:intergenic
CTAATGATAACACTGAGACC+TGG 0.638435 6_3:-7502647 None:intergenic
ATATGAAACATATACCTGGT+AGG 0.642335 6_3:-7501632 None:intergenic
ATATGTGGAATGACCGGTGA+TGG 0.646343 6_3:+7502524 Msa0936640:CDS
ATAATTCGATACGTATTGAG+TGG 0.646777 6_3:+7504783 Msa0936640:CDS
TTAAATGGGCGCATGCGCAG+AGG 0.653344 6_3:+7505146 Msa0936640:CDS
ACGAAGTCTTGCCAATCGGG+TGG 0.655034 6_3:-7499269 None:intergenic
TGTCTACCTGCTGAGCTAAG+CGG 0.655328 6_3:-7500278 None:intergenic
ATGAGCCCGATAAACTGCCA+AGG 0.659711 6_3:-7501777 None:intergenic
CAAGTAAACGAGCATCCGCA+GGG 0.659972 6_3:-7499620 None:intergenic
TCAGGCTCTACATGCAAACA+GGG 0.668111 6_3:+7499824 Msa0936640:CDS
CCCGATTGGCAAGACTTCGT+CGG 0.669725 6_3:+7499272 Msa0936640:CDS
GATGGAAAGAAAGAAAGCCA+AGG 0.670475 6_3:+7501750 Msa0936640:CDS
TGAAGAAGCTAAAAGACGAG+CGG 0.682058 6_3:+7505246 Msa0936640:CDS
ACCACCAAGAATTATTCCAG+TGG 0.688008 6_3:-7503598 None:intergenic
AACACCGAAAATATCGTCCG+GGG 0.697136 6_3:+7500169 Msa0936640:CDS
AGGCCCTTATATTTGTAACG+CGG 0.707964 6_3:+7504032 Msa0936640:CDS
GCTGCTACAAGTAACAAACC+CGG 0.711018 6_3:-7504082 None:intergenic
CCGAGCAGCCATGAGAACAA+CGG 0.711310 6_3:-7500751 None:intergenic
GCTAGGTGATATTATCCCTG+CGG 0.716733 6_3:+7499605 Msa0936640:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTAAATT+TGG + chr6_3:7498100-7498119 Msa0936640:intron 0.0%
!!! TTTTTTTTTAATGAATTATG+TGG + chr6_3:7498177-7498196 Msa0936640:intron 10.0%
!! TTAAATATGTAATAACATAT+TGG + chr6_3:7501146-7501165 Msa0936640:intron 10.0%
!!! GAGTTTATTTTTGATATTTT+TGG + chr6_3:7498215-7498234 Msa0936640:intron 15.0%
!!! TACTATTTTGATTTTGTTTA+TGG + chr6_3:7498304-7498323 Msa0936640:intron 15.0%
!!! AATAAATAAGTAAAAGTGTT+CGG - chr6_3:7498956-7498975 None:intergenic 15.0%
!! ATACTCTTAATTATAAATTC+AGG + chr6_3:7499512-7499531 Msa0936640:intron 15.0%
!!! TTTTTATAGATTTTTGCTAA+AGG + chr6_3:7500714-7500733 Msa0936640:intron 15.0%
!!! TGTTTTTTCACAATAATTTA+TGG - chr6_3:7502275-7502294 None:intergenic 15.0%
!! ATATTAAGTGAATAATATCA+AGG - chr6_3:7503212-7503231 None:intergenic 15.0%
!! AAAAAATTGATTAAAAAGAC+AGG - chr6_3:7503460-7503479 None:intergenic 15.0%
!! TTATAACATTGTTATATTCA+TGG - chr6_3:7504615-7504634 None:intergenic 15.0%
!! ACAATTTATTCATATATTCT+GGG - chr6_3:7505297-7505316 None:intergenic 15.0%
!! AACAATTTATTCATATATTC+TGG - chr6_3:7505298-7505317 None:intergenic 15.0%
!! TATAAGAGATATTCACATAA+AGG + chr6_3:7497942-7497961 Msa0936640:five_prime_UTR 20.0%
!!! TTTTTAATGAATTATGTGGT+TGG + chr6_3:7498181-7498200 Msa0936640:intron 20.0%
!!! TTCTAGTTTTTGTTTGATTA+TGG + chr6_3:7498270-7498289 Msa0936640:intron 20.0%
!!! TTTGATTTTGTTTATGGTTA+AGG + chr6_3:7498310-7498329 Msa0936640:intron 20.0%
!! CATATCATACATTAACATAA+GGG - chr6_3:7498549-7498568 None:intergenic 20.0%
!! TCATATCATACATTAACATA+AGG - chr6_3:7498550-7498569 None:intergenic 20.0%
!!! GAGAATATTTATTTTGATCA+TGG + chr6_3:7498982-7499001 Msa0936640:intron 20.0%
!! CTTAGTTATCAACAAATTAA+TGG - chr6_3:7499723-7499742 None:intergenic 20.0%
!!! ACAAAAAGCATAAATGATAT+AGG - chr6_3:7500483-7500502 None:intergenic 20.0%
!!! AATAGTAAGTTTTTGTAATG+CGG + chr6_3:7500640-7500659 Msa0936640:intron 20.0%
!! TATTAACACAAACAATTACT+TGG - chr6_3:7501469-7501488 None:intergenic 20.0%
!! GTAAATGTTAAAATGATAAC+AGG + chr6_3:7501864-7501883 Msa0936640:intron 20.0%
!! AATGTACTTAAATTTCTTCT+AGG + chr6_3:7502010-7502029 Msa0936640:intron 20.0%
!! CTATATAACTTACTACAATA+CGG - chr6_3:7502834-7502853 None:intergenic 20.0%
!!! ATTATTGCTATTCTTAATGA+TGG + chr6_3:7502986-7503005 Msa0936640:CDS 20.0%
!! TATAGTCTCTACAAATAATA+AGG + chr6_3:7503269-7503288 Msa0936640:intron 20.0%
!! ATAGTCTCTACAAATAATAA+GGG + chr6_3:7503270-7503289 Msa0936640:intron 20.0%
!! TACAATTATGACAATATCTA+AGG + chr6_3:7503521-7503540 Msa0936640:CDS 20.0%
!! AAATGAAAATGTTTCTTACA+GGG - chr6_3:7503680-7503699 None:intergenic 20.0%
!! AAAATGAAAATGTTTCTTAC+AGG - chr6_3:7503681-7503700 None:intergenic 20.0%
!! ATTAGTTCATTGAAATTGAT+CGG - chr6_3:7504333-7504352 None:intergenic 20.0%
!!! TTGAATGTTAAGTTATTTTG+TGG + chr6_3:7504431-7504450 Msa0936640:intron 20.0%
!! CAATGTTATAATATCTTCTT+TGG + chr6_3:7504624-7504643 Msa0936640:intron 20.0%
!! TATCAGTAAAATTACAGTAA+GGG + chr6_3:7504854-7504873 Msa0936640:intron 20.0%
!! AAACTATTTGAGAAAGTTTA+TGG + chr6_3:7504906-7504925 Msa0936640:intron 20.0%
!! GTTATAAGTTGTTATAGAAA+TGG + chr6_3:7504945-7504964 Msa0936640:intron 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG + chr6_3:7505016-7505035 Msa0936640:intron 20.0%
! ACATTAACATAAGGGAAAAA+AGG - chr6_3:7498541-7498560 None:intergenic 25.0%
! ATGAAGTGTATATACTACAT+AGG - chr6_3:7498575-7498594 None:intergenic 25.0%
! ACACTAGTAATTTGAGAAAA+TGG - chr6_3:7498662-7498681 None:intergenic 25.0%
!!! TTCACCTTTTTAGTATTTTG+TGG + chr6_3:7498794-7498813 Msa0936640:intron 25.0%
! AAAGCCACAAAATACTAAAA+AGG - chr6_3:7498801-7498820 None:intergenic 25.0%
!!! AAGCAAGTTTTTGAAGTTTT+TGG + chr6_3:7498848-7498867 Msa0936640:CDS 25.0%
!!! AGCAAGTTTTTGAAGTTTTT+GGG + chr6_3:7498849-7498868 Msa0936640:CDS 25.0%
!!! TTGATCATGGTTTTAAATTG+CGG + chr6_3:7498995-7499014 Msa0936640:intron 25.0%
!!! CTTTTAGAAATAGTTGTAGA+AGG + chr6_3:7499182-7499201 Msa0936640:intron 25.0%
! GATATAATTAGTGTTAAGCT+AGG + chr6_3:7499588-7499607 Msa0936640:intron 25.0%
!!! TCTCTCTTGTTTTTCTATAT+CGG + chr6_3:7499687-7499706 Msa0936640:intron 25.0%
!!! TTTGTTGATAACTAAGATTC+TGG + chr6_3:7499727-7499746 Msa0936640:intron 25.0%
!!! ATAACTAAGATTCTGGTTTT+CGG + chr6_3:7499734-7499753 Msa0936640:intron 25.0%
! ATTGATACTTAGCATTACTT+TGG + chr6_3:7500051-7500070 Msa0936640:intron 25.0%
! TTGATACTTAGCATTACTTT+GGG + chr6_3:7500052-7500071 Msa0936640:intron 25.0%
! CTATTGATATAAGTACTTGT+GGG - chr6_3:7500430-7500449 None:intergenic 25.0%
! TCTATTGATATAAGTACTTG+TGG - chr6_3:7500431-7500450 None:intergenic 25.0%
! AACATTAAAACACTTTCTGT+AGG - chr6_3:7500691-7500710 None:intergenic 25.0%
!!! AGATAAAAGTATACCTCTTT+TGG - chr6_3:7500837-7500856 None:intergenic 25.0%
!! ATCATTATATCCTATTTCTC+AGG + chr6_3:7501719-7501738 Msa0936640:intron 25.0%
!! TTTTCAATCAAATCATCAAC+TGG - chr6_3:7502148-7502167 None:intergenic 25.0%
! GAAAGGAAAAATATTATACC+AGG - chr6_3:7502196-7502215 None:intergenic 25.0%
! TACTAAGAATTTACAGAGAA+AGG - chr6_3:7502213-7502232 None:intergenic 25.0%
!!! TTTGAAATATTGATAATGCG+AGG - chr6_3:7503123-7503142 None:intergenic 25.0%
!! TACAACATTTTGTAATTCCA+GGG - chr6_3:7503151-7503170 None:intergenic 25.0%
!! TTACAACATTTTGTAATTCC+AGG - chr6_3:7503152-7503171 None:intergenic 25.0%
! GAAATTGCAAAATATTGATC+AGG - chr6_3:7503305-7503324 None:intergenic 25.0%
!!! TAGAATATTGATAATGCATG+AGG + chr6_3:7503336-7503355 Msa0936640:intron 25.0%
! TACAATAGCAAGAACTAAAT+TGG + chr6_3:7503376-7503395 Msa0936640:intron 25.0%
! ACAATAGCAAGAACTAAATT+GGG + chr6_3:7503377-7503396 Msa0936640:intron 25.0%
!! TGACATTAATTAGTCTGTAA+CGG - chr6_3:7503434-7503453 None:intergenic 25.0%
! TATGATTTCTTGAATATGTC+AGG + chr6_3:7503498-7503517 Msa0936640:intron 25.0%
! TTATGACAATATCTAAGGAT+AGG + chr6_3:7503526-7503545 Msa0936640:CDS 25.0%
! TATGACAATATCTAAGGATA+GGG + chr6_3:7503527-7503546 Msa0936640:CDS 25.0%
!! AATAATTCTTGGTGGTTATT+TGG + chr6_3:7503605-7503624 Msa0936640:CDS 25.0%
!!! TGATGACAGTTATTTTCTTT+TGG + chr6_3:7503631-7503650 Msa0936640:CDS 25.0%
!!! GATGACAGTTATTTTCTTTT+GGG + chr6_3:7503632-7503651 Msa0936640:CDS 25.0%
!! AGTATAAAAACATGATAGTG+AGG - chr6_3:7503729-7503748 None:intergenic 25.0%
!! GTTTAATTTCTATACACAGT+CGG - chr6_3:7503805-7503824 None:intergenic 25.0%
! GTGAATATAACCATGTTTAT+CGG + chr6_3:7504169-7504188 Msa0936640:intron 25.0%
! TGACTTAATACACTAAGTTT+AGG - chr6_3:7504357-7504376 None:intergenic 25.0%
!! TATTCCACTTGATTTTATCA+AGG + chr6_3:7504758-7504777 Msa0936640:intron 25.0%
! CTATCAGTAAAATTACAGTA+AGG + chr6_3:7504853-7504872 Msa0936640:intron 25.0%
!! ATTTTCAGATTGCATTTACA+AGG + chr6_3:7505092-7505111 Msa0936640:intron 25.0%
!! TTTACAAGGAAGAAAGATTT+TGG + chr6_3:7505106-7505125 Msa0936640:intron 25.0%
! GAAAATGATGATTGCAAAAT+AGG - chr6_3:7505326-7505345 None:intergenic 25.0%
!!! TCATTTTCTAAAGCCTTTAT+AGG + chr6_3:7505338-7505357 Msa0936640:intron 25.0%
!!! CATTTTCTAAAGCCTTTATA+GGG + chr6_3:7505339-7505358 Msa0936640:intron 25.0%
ACTTTGCAGCATTAAAATCT+TGG + chr6_3:7497970-7497989 Msa0936640:five_prime_UTR 30.0%
CTTTGCAGCATTAAAATCTT+GGG + chr6_3:7497971-7497990 Msa0936640:five_prime_UTR 30.0%
! AGCATTAAAATCTTGGGTTT+TGG + chr6_3:7497977-7497996 Msa0936640:five_prime_UTR 30.0%
!!! GAGAAATGAGTGTTTTTTCT+TGG - chr6_3:7498065-7498084 None:intergenic 30.0%
! GGTTACTTGAATTTCTTTTC+AGG + chr6_3:7498331-7498350 Msa0936640:intron 30.0%
! GGAAAAAAGGATCTTTTAAG+AGG - chr6_3:7498528-7498547 None:intergenic 30.0%
!!! TGAAGTTTTTGGGATTTATG+TGG + chr6_3:7498859-7498878 Msa0936640:CDS 30.0%
! TAGCAATATAAAGCATTTCG+AGG - chr6_3:7499087-7499106 None:intergenic 30.0%
AAATTTCACAACCACAATTG+CGG - chr6_3:7499110-7499129 None:intergenic 30.0%
!!! GATTTTGATTTTGAAGTGTG+TGG + chr6_3:7499138-7499157 Msa0936640:intron 30.0%
!!! AGTTGTAGAAGGTTCTTTTT+TGG + chr6_3:7499193-7499212 Msa0936640:intron 30.0%
TTAACACTAATTATATCGCC+TGG - chr6_3:7499585-7499604 None:intergenic 30.0%
!! TTTGAAACTAAGCGTGTTTT+TGG + chr6_3:7499967-7499986 Msa0936640:intron 30.0%
AAAAGTTCCCAATTGAAGTT+AGG - chr6_3:7500092-7500111 None:intergenic 30.0%
TTGTATATGTTCAATTGCTG+TGG + chr6_3:7500110-7500129 Msa0936640:CDS 30.0%
TGTATATGTTCAATTGCTGT+GGG + chr6_3:7500111-7500130 Msa0936640:CDS 30.0%
!!! GATATTTTCGGTGTTGAATT+GGG - chr6_3:7500164-7500183 None:intergenic 30.0%
!! ATGCTTTTTGTGATTATTGC+AGG + chr6_3:7500492-7500511 Msa0936640:intron 30.0%
!! TGCTTTTTGTGATTATTGCA+GGG + chr6_3:7500493-7500512 Msa0936640:intron 30.0%
TGTTGACAAGAATCTTATTG+AGG + chr6_3:7500612-7500631 Msa0936640:intron 30.0%
CTATAGATGCTGCTATTATA+GGG + chr6_3:7500799-7500818 Msa0936640:CDS 30.0%
!! GCAAGTTTTATGTGATGATT+TGG - chr6_3:7500872-7500891 None:intergenic 30.0%
! CTATAGTGTTTTGTGTCAAT+AGG + chr6_3:7500910-7500929 Msa0936640:intron 30.0%
ACACCTTAAATATGAAGTGT+CGG - chr6_3:7501025-7501044 None:intergenic 30.0%
CTTGTATTTGTCCGAAAATT+AGG + chr6_3:7501305-7501324 Msa0936640:intron 30.0%
ATATGAAACATATACCTGGT+AGG - chr6_3:7501635-7501654 None:intergenic 30.0%
! TGAGCAAATTCAAGTTACAT+TGG + chr6_3:7501675-7501694 Msa0936640:intron 30.0%
! ATAAGTAGGGCATTAAATCT+TGG + chr6_3:7501840-7501859 Msa0936640:intron 30.0%
TTAATATGTTTCGCACTACT+CGG + chr6_3:7501963-7501982 Msa0936640:intron 30.0%
GATTTGATTGAAAAAGCTGA+TGG + chr6_3:7502154-7502173 Msa0936640:CDS 30.0%
TATTATACCAGGAAAAACAC+CGG - chr6_3:7502185-7502204 None:intergenic 30.0%
TCCACACATCAATATAATAG+CGG + chr6_3:7502235-7502254 Msa0936640:intron 30.0%
AAGTACACTTTACGTTTACA+AGG + chr6_3:7502357-7502376 Msa0936640:intron 30.0%
AACTAATCATGTCAAACAAG+CGG - chr6_3:7502448-7502467 None:intergenic 30.0%
CTGTGTAATTCTTCATTCTT+TGG - chr6_3:7502700-7502719 None:intergenic 30.0%
TTGATGTTAGAACTGAAAGT+AGG - chr6_3:7502727-7502746 None:intergenic 30.0%
! CTTTCAGTTCTAACATCAAA+TGG + chr6_3:7502728-7502747 Msa0936640:intron 30.0%
! AGAAATTTTATGTGACAGCT+TGG + chr6_3:7502908-7502927 Msa0936640:intron 30.0%
!! ATTTGATTTTCCACCATTCA+TGG + chr6_3:7502958-7502977 Msa0936640:CDS 30.0%
ATGACTTCACTAGTAAAAAG+GGG - chr6_3:7503047-7503066 None:intergenic 30.0%
CATGACTTCACTAGTAAAAA+GGG - chr6_3:7503048-7503067 None:intergenic 30.0%
CAATATTTCAAAATGATCCC+TGG + chr6_3:7503131-7503150 Msa0936640:intron 30.0%
ATGACATAAGTTTGTGATGT+CGG - chr6_3:7503246-7503265 None:intergenic 30.0%
TTTACCACTGGAATAATTCT+TGG + chr6_3:7503594-7503613 Msa0936640:CDS 30.0%
! TGTAATTTTCAGAGCACATT+TGG + chr6_3:7503926-7503945 Msa0936640:intron 30.0%
GACTAATTGTACTAACTTGA+AGG - chr6_3:7504012-7504031 None:intergenic 30.0%
TCAAGTTAGTACAATTAGTC+AGG + chr6_3:7504012-7504031 Msa0936640:CDS 30.0%
GTATTCTACGATTCATGATA+AGG + chr6_3:7504532-7504551 Msa0936640:intron 30.0%
TTCATGATAAGGTTCGATTA+TGG + chr6_3:7504543-7504562 Msa0936640:intron 30.0%
AAAACTCCAGTTTGCATAAA+CGG - chr6_3:7504673-7504692 None:intergenic 30.0%
ATGACCTTGATAAAATCAAG+TGG - chr6_3:7504765-7504784 None:intergenic 30.0%
ATAATTCGATACGTATTGAG+TGG + chr6_3:7504783-7504802 Msa0936640:CDS 30.0%
!!! GGATCTTGTTTTTGATCAAA+GGG + chr6_3:7504815-7504834 Msa0936640:CDS 30.0%
AACTTAACATCTGAACTTGT+TGG + chr6_3:7505042-7505061 Msa0936640:intron 30.0%
!! AAGGAAGAAAGATTTTGGAA+AGG + chr6_3:7505111-7505130 Msa0936640:intron 30.0%
TTATACAGAGCTTAATCAGA+TGG + chr6_3:7505222-7505241 Msa0936640:CDS 30.0%
ATGATGATTGCAAAATAGGT+TGG - chr6_3:7505322-7505341 None:intergenic 30.0%
ATCATCAAAGACGTTAACAT+AGG - chr6_3:7505431-7505450 None:intergenic 30.0%
!!! ATCTTGGGTTTTGGCTATTA+TGG + chr6_3:7497986-7498005 Msa0936640:exon 35.0%
! TTTGACAGAAGCTGTTGATT+TGG + chr6_3:7498037-7498056 Msa0936640:CDS 35.0%
! GTTTGAAACACTTCCTCAAT+TGG - chr6_3:7498365-7498384 None:intergenic 35.0%
!! AGGAAGTGTTTCAAACTTTG+AGG + chr6_3:7498369-7498388 Msa0936640:CDS 35.0%
!! ACTTTGAGGTGTGATTCAAA+TGG + chr6_3:7498383-7498402 Msa0936640:CDS 35.0%
! CTTCATATTGAAAGTGTGTC+TGG + chr6_3:7498589-7498608 Msa0936640:intron 35.0%
ACACATGCGATTACATTCAA+CGG + chr6_3:7498634-7498653 Msa0936640:intron 35.0%
CTAAACATTGACACAACTAC+CGG - chr6_3:7498732-7498751 None:intergenic 35.0%
!!! ATGGTTTTAAATTGCGGTTG+TGG + chr6_3:7499001-7499020 Msa0936640:intron 35.0%
CTTTACATTGCAGTGAAATG+CGG + chr6_3:7499032-7499051 Msa0936640:intron 35.0%
TTATATTGCTACCGCAATTG+TGG + chr6_3:7499096-7499115 Msa0936640:intron 35.0%
! TTTAGAATAAACCACCCGAT+TGG + chr6_3:7499258-7499277 Msa0936640:intron 35.0%
TTCCACAATAAGTTTCATCG+AGG + chr6_3:7499319-7499338 Msa0936640:intron 35.0%
TTCCTCGATGAAACTTATTG+TGG - chr6_3:7499324-7499343 None:intergenic 35.0%
!! GAGATTAACACCTTAGCTTT+TGG - chr6_3:7499392-7499411 None:intergenic 35.0%
! TAAATTCAGGTTCTTCGAGA+TGG + chr6_3:7499525-7499544 Msa0936640:intron 35.0%
! AAATTCAGGTTCTTCGAGAT+GGG + chr6_3:7499526-7499545 Msa0936640:intron 35.0%
! TTACTTTGGGTTCCTTAAAC+AGG + chr6_3:7500065-7500084 Msa0936640:intron 35.0%
TTGAAGTTAGGACCTGTTTA+AGG - chr6_3:7500080-7500099 None:intergenic 35.0%
AAACAGGTCCTAACTTCAAT+TGG + chr6_3:7500081-7500100 Msa0936640:intron 35.0%
AACAGGTCCTAACTTCAATT+GGG + chr6_3:7500082-7500101 Msa0936640:intron 35.0%
!!! CGATATTTTCGGTGTTGAAT+TGG - chr6_3:7500165-7500184 None:intergenic 35.0%
ACAAGTAGATTATCAATCCC+CGG - chr6_3:7500189-7500208 None:intergenic 35.0%
AATCTACTTGTGCTTCTCAT+TGG + chr6_3:7500198-7500217 Msa0936640:CDS 35.0%
ATTGTAACTGACAGAACTGT+AGG - chr6_3:7500243-7500262 None:intergenic 35.0%
TACAGTTCTGTCAGTTACAA+TGG + chr6_3:7500242-7500261 Msa0936640:CDS 35.0%
AATGACAGCAATAGAAGAGA+TGG + chr6_3:7500531-7500550 Msa0936640:intron 35.0%
! AGTAAGTTTTTGTAATGCGG+TGG + chr6_3:7500643-7500662 Msa0936640:intron 35.0%
GCTATAGATGCTGCTATTAT+AGG + chr6_3:7500798-7500817 Msa0936640:CDS 35.0%
CAACAAACCAAATGAGGAAA+GGG - chr6_3:7500992-7501011 None:intergenic 35.0%
ACAACAAACCAAATGAGGAA+AGG - chr6_3:7500993-7501012 None:intergenic 35.0%
GCTTTACAACAAACCAAATG+AGG - chr6_3:7500998-7501017 None:intergenic 35.0%
ATTTGTCCGAAAATTAGGCA+AGG + chr6_3:7501310-7501329 Msa0936640:intron 35.0%
TTTGTCCGAAAATTAGGCAA+GGG + chr6_3:7501311-7501330 Msa0936640:intron 35.0%
GAATCACTTTCATTGTCAAG+TGG - chr6_3:7501495-7501514 None:intergenic 35.0%
GAGCATATGAAACATATACC+TGG - chr6_3:7501639-7501658 None:intergenic 35.0%
TTGTGTCCTTTGCATGTTAT+TGG + chr6_3:7501888-7501907 Msa0936640:intron 35.0%
TGTGTCCTTTGCATGTTATT+GGG + chr6_3:7501889-7501908 Msa0936640:intron 35.0%
GCGCTTATAGAATAAGCATT+TGG + chr6_3:7501938-7501957 Msa0936640:intron 35.0%
CTATCAATAGCGAAAGAAAC+AGG + chr6_3:7502040-7502059 Msa0936640:CDS 35.0%
!! TACCCTTCATCAGCTTTATT+AGG + chr6_3:7502091-7502110 Msa0936640:CDS 35.0%
TCAAATCATCAACTGGTAAG+AGG - chr6_3:7502141-7502160 None:intergenic 35.0%
ACGATCTCATATTTGTGTTC+TGG - chr6_3:7502479-7502498 None:intergenic 35.0%
AAACACATATGTGGAATGAC+CGG + chr6_3:7502518-7502537 Msa0936640:CDS 35.0%
ATATCTGCTTTCTTAAGAGC+AGG - chr6_3:7502563-7502582 None:intergenic 35.0%
GCTCTTAAGAAAGCAGATAT+TGG + chr6_3:7502563-7502582 Msa0936640:CDS 35.0%
! TGGTTCTGTTAGAACAATGT+CGG - chr6_3:7502630-7502649 None:intergenic 35.0%
ATAATCAGTACCATGAATGG+TGG - chr6_3:7502971-7502990 None:intergenic 35.0%
GCAATAATCAGTACCATGAA+TGG - chr6_3:7502974-7502993 None:intergenic 35.0%
CCATGACTTCACTAGTAAAA+AGG - chr6_3:7503049-7503068 None:intergenic 35.0%
! CCTTTTTACTAGTGAAGTCA+TGG + chr6_3:7503046-7503065 Msa0936640:intron 35.0%
ATGGCTGTATATATCGTAGT+TGG + chr6_3:7503065-7503084 Msa0936640:intron 35.0%
TAGTTGGTCCTTGAAATTGT+AGG + chr6_3:7503081-7503100 Msa0936640:intron 35.0%
!! ATATTGATAATGCGAGGACT+AGG - chr6_3:7503117-7503136 None:intergenic 35.0%
GTAAAGTTTGTCTCTCAATC+TGG + chr6_3:7503168-7503187 Msa0936640:intron 35.0%
ACTCGAAGTCATGGATATTT+AGG + chr6_3:7503405-7503424 Msa0936640:intron 35.0%
AGTATCAAGTCTTCAGAAAG+AGG + chr6_3:7503949-7503968 Msa0936640:CDS 35.0%
AAGTCTTCAGAAAGAGGATA+GGG + chr6_3:7503955-7503974 Msa0936640:CDS 35.0%
! AACTTGAAGGTATATTGCTG+AGG - chr6_3:7503999-7504018 None:intergenic 35.0%
TGACCGCGTTACAAATATAA+GGG - chr6_3:7504038-7504057 None:intergenic 35.0%
TTATATTTGTAACGCGGTCA+CGG + chr6_3:7504038-7504057 Msa0936640:CDS 35.0%
TCGAAATTCAACTTAACGAG+TGG - chr6_3:7504294-7504313 None:intergenic 35.0%
!!! GGGATCTTGTTTTTGATCAA+AGG + chr6_3:7504814-7504833 Msa0936640:CDS 35.0%
!! TAACATCTGAACTTGTTGGT+TGG + chr6_3:7505046-7505065 Msa0936640:intron 35.0%
AGGAAGAACGTGAACTTAAA+TGG + chr6_3:7505131-7505150 Msa0936640:CDS 35.0%
GGAAGAACGTGAACTTAAAT+GGG + chr6_3:7505132-7505151 Msa0936640:CDS 35.0%
TTGACTCATTTGCCCTATAA+AGG - chr6_3:7505354-7505373 None:intergenic 35.0%
TACTACCGAAGAGTGAATAA+TGG + chr6_3:7505398-7505417 Msa0936640:intron 35.0%
AGAAGCCATTATTCACTCTT+CGG - chr6_3:7505406-7505425 None:intergenic 35.0%
TTCTGTCAAAACAGCATGCA+TGG - chr6_3:7498027-7498046 None:intergenic 40.0%
TCAGGAAAATGTGCCAATTG+AGG + chr6_3:7498349-7498368 Msa0936640:intron 40.0%
CTTTGGTCACAACAAACTTG+AGG + chr6_3:7498442-7498461 Msa0936640:CDS 40.0%
GTGTTAGTGTCAAAACGAGT+CGG - chr6_3:7498618-7498637 None:intergenic 40.0%
!! TGGCTTTATGTCTTCTGTTG+TGG + chr6_3:7498814-7498833 Msa0936640:intron 40.0%
TTATGTGGAATCCTCTCTCA+TGG + chr6_3:7498874-7498893 Msa0936640:CDS 40.0%
TATGTGGAATCCTCTCTCAT+GGG + chr6_3:7498875-7498894 Msa0936640:CDS 40.0%
AGCAATCATGGCTATTGCTT+TGG + chr6_3:7498911-7498930 Msa0936640:CDS 40.0%
AGTGTGTGGATGCACATTAT+AGG + chr6_3:7499152-7499171 Msa0936640:intron 40.0%
TTCATCGAGGAAAACAATGC+TGG + chr6_3:7499332-7499351 Msa0936640:intron 40.0%
TGATCCGTTGAAGATTGATC+AGG + chr6_3:7499647-7499666 Msa0936640:CDS 40.0%
TGCACCTGATCAATCTTCAA+CGG - chr6_3:7499654-7499673 None:intergenic 40.0%
!!! CTAAGATTCTGGTTTTCGGA+CGG + chr6_3:7499738-7499757 Msa0936640:intron 40.0%
CCTGAATAAACACTGTCACT+GGG - chr6_3:7499809-7499828 None:intergenic 40.0%
! GAAGCAGTTGTTATTGCAAC+CGG + chr6_3:7499854-7499873 Msa0936640:CDS 40.0%
AGTTCATACCTTCTTTGGCA+AGG + chr6_3:7499877-7499896 Msa0936640:CDS 40.0%
! AAAATGCCCGACTTGATTTG+TGG - chr6_3:7499921-7499940 None:intergenic 40.0%
TCAACACCGAAAATATCGTC+CGG + chr6_3:7500167-7500186 Msa0936640:CDS 40.0%
CTGTCAGTTACAATGGCAAT+CGG + chr6_3:7500249-7500268 Msa0936640:CDS 40.0%
TAAGTACTTGTGGGACTCTT+CGG - chr6_3:7500421-7500440 None:intergenic 40.0%
GTATTGTGCAGTGACAAAAC+TGG + chr6_3:7500565-7500584 Msa0936640:intron 40.0%
TAGCAGCATCTATAGCATCT+TGG - chr6_3:7500794-7500813 None:intergenic 40.0%
AAACCAAATGAGGAAAGGGA+AGG - chr6_3:7500988-7501007 None:intergenic 40.0%
!! CCTTAAATATGAAGTGTCGG+TGG - chr6_3:7501022-7501041 None:intergenic 40.0%
CCACCGACACTTCATATTTA+AGG + chr6_3:7501019-7501038 Msa0936640:intron 40.0%
AAAATGCATCGTGTCAGCAA+AGG + chr6_3:7501414-7501433 Msa0936640:CDS 40.0%
GATAAGAAAGATACCTGCTC+TGG - chr6_3:7501444-7501463 None:intergenic 40.0%
TCAGGAACTTCCTGAGAAAT+AGG - chr6_3:7501732-7501751 None:intergenic 40.0%
ATTTCTCAGGAAGTTCCTGA+TGG + chr6_3:7501732-7501751 Msa0936640:intron 40.0%
TGGCTTTCTTTCTTTCCATC+AGG - chr6_3:7501750-7501769 None:intergenic 40.0%
GATGGAAAGAAAGAAAGCCA+AGG + chr6_3:7501750-7501769 Msa0936640:CDS 40.0%
ATAGTGCAGAGACGATAAGT+AGG + chr6_3:7501826-7501845 Msa0936640:intron 40.0%
TAGTGCAGAGACGATAAGTA+GGG + chr6_3:7501827-7501846 Msa0936640:intron 40.0%
ACATGCCCAATAACATGCAA+AGG - chr6_3:7501897-7501916 None:intergenic 40.0%
TGCATGTTATTGGGCATGTT+TGG + chr6_3:7501898-7501917 Msa0936640:intron 40.0%
TGTTAGTTCCCATTCCTAGA+CGG - chr6_3:7502069-7502088 None:intergenic 40.0%
GGCCTAATAAAGCTGATGAA+GGG - chr6_3:7502096-7502115 None:intergenic 40.0%
TGGCCTAATAAAGCTGATGA+AGG - chr6_3:7502097-7502116 None:intergenic 40.0%
!! AGCTTTATTAGGCCAGAACA+AGG + chr6_3:7502102-7502121 Msa0936640:CDS 40.0%
CAATTCCTTCATCCTTGTTC+TGG - chr6_3:7502117-7502136 None:intergenic 40.0%
CAGAACAAGGATGAAGGAAT+TGG + chr6_3:7502115-7502134 Msa0936640:CDS 40.0%
!! GAAAAAGCTGATGGATTTGC+CGG + chr6_3:7502163-7502182 Msa0936640:CDS 40.0%
GCCGCTATTATATTGATGTG+TGG - chr6_3:7502239-7502258 None:intergenic 40.0%
CAAGCTAGGAAACACATATG+TGG + chr6_3:7502509-7502528 Msa0936640:CDS 40.0%
AGCATCATTAACACCATCAC+CGG - chr6_3:7502540-7502559 None:intergenic 40.0%
GACATTGTTCTAACAGAACC+AGG + chr6_3:7502629-7502648 Msa0936640:CDS 40.0%
CTAATGATAACACTGAGACC+TGG - chr6_3:7502650-7502669 None:intergenic 40.0%
!! TCTTTGGAATATTGCTCGAC+TGG - chr6_3:7502684-7502703 None:intergenic 40.0%
ACAGCTTGGTTTCATGTTAC+TGG + chr6_3:7502922-7502941 Msa0936640:intron 40.0%
TCATGTTACTGGCACTCATA+TGG + chr6_3:7502933-7502952 Msa0936640:CDS 40.0%
GATACGGTCCTACAATTTCA+AGG - chr6_3:7503092-7503111 None:intergenic 40.0%
TGGGAATTTACTCGAAGTCA+TGG + chr6_3:7503396-7503415 Msa0936640:intron 40.0%
ACCACTGGAATAATTCTTGG+TGG + chr6_3:7503597-7503616 Msa0936640:CDS 40.0%
ACCACCAAGAATTATTCCAG+TGG - chr6_3:7503601-7503620 None:intergenic 40.0%
CAAGTCTTCAGAAAGAGGAT+AGG + chr6_3:7503954-7503973 Msa0936640:CDS 40.0%
AGGCCCTTATATTTGTAACG+CGG + chr6_3:7504032-7504051 Msa0936640:CDS 40.0%
GTGACCGCGTTACAAATATA+AGG - chr6_3:7504039-7504058 None:intergenic 40.0%
! AGCTTTTGTCATTGCTCAAC+TGG + chr6_3:7504102-7504121 Msa0936640:CDS 40.0%
TCGCAAGATACCGATAAACA+TGG - chr6_3:7504182-7504201 None:intergenic 40.0%
! TGATTGCCGTTTATGCAAAC+TGG + chr6_3:7504664-7504683 Msa0936640:intron 40.0%
! TGGAGTTTTGCTGCAATTGA+AGG + chr6_3:7504684-7504703 Msa0936640:intron 40.0%
! GGAGTTTTGCTGCAATTGAA+GGG + chr6_3:7504685-7504704 Msa0936640:intron 40.0%
TTTGCTGCAATTGAAGGGAT+TGG + chr6_3:7504690-7504709 Msa0936640:intron 40.0%
TGCAATTGAAGGGATTGGAT+GGG + chr6_3:7504695-7504714 Msa0936640:intron 40.0%
!! CAGTAAGGGCTTGTTGAATT+AGG + chr6_3:7504868-7504887 Msa0936640:intron 40.0%
TGAAGAAGCTAAAAGACGAG+CGG + chr6_3:7505246-7505265 Msa0936640:CDS 40.0%
ACTCTCAACAAAAGCTGCTG+AGG + chr6_3:7498406-7498425 Msa0936640:CDS 45.0%
CAACAAACTTGAGGAGAAGC+AGG + chr6_3:7498451-7498470 Msa0936640:CDS 45.0%
! TCTTCTGTTGTGGCTTTTGC+AGG + chr6_3:7498824-7498843 Msa0936640:intron 45.0%
ATGGCTATTGCTTTGGCCAA+TGG + chr6_3:7498918-7498937 Msa0936640:CDS 45.0%
TAATGCTGCTGCAGCTCTTA+TGG + chr6_3:7499355-7499374 Msa0936640:intron 45.0%
GATGCTAGCATTCTTGTTCC+AGG + chr6_3:7499564-7499583 Msa0936640:intron 45.0%
GCTAGGTGATATTATCCCTG+CGG + chr6_3:7499605-7499624 Msa0936640:intron 45.0%
ACTTACAGGTGAGTCTCTTC+CGG + chr6_3:7499772-7499791 Msa0936640:CDS 45.0%
CCCAGTGACAGTGTTTATTC+AGG + chr6_3:7499806-7499825 Msa0936640:CDS 45.0%
GCCTGAATAAACACTGTCAC+TGG - chr6_3:7499810-7499829 None:intergenic 45.0%
TTCAGGCTCTACATGCAAAC+AGG + chr6_3:7499823-7499842 Msa0936640:CDS 45.0%
TCAGGCTCTACATGCAAACA+GGG + chr6_3:7499824-7499843 Msa0936640:CDS 45.0%
ACCGGAGTTCATACCTTCTT+TGG + chr6_3:7499872-7499891 Msa0936640:CDS 45.0%
! GCCAAAGAAGGTATGAACTC+CGG - chr6_3:7499876-7499895 None:intergenic 45.0%
! GTCGACTCCACAAATCAAGT+CGG + chr6_3:7499911-7499930 Msa0936640:CDS 45.0%
TCGACTCCACAAATCAAGTC+GGG + chr6_3:7499912-7499931 Msa0936640:CDS 45.0%
!!! GCGTGTTTTTGGTTCTGCAA+CGG + chr6_3:7499978-7499997 Msa0936640:intron 45.0%
CAACACCGAAAATATCGTCC+GGG + chr6_3:7500168-7500187 Msa0936640:CDS 45.0%
AACACCGAAAATATCGTCCG+GGG + chr6_3:7500169-7500188 Msa0936640:CDS 45.0%
! CAATCCCCGGACGATATTTT+CGG - chr6_3:7500176-7500195 None:intergenic 45.0%
CTACTTGTGCTTCTCATTGG+AGG + chr6_3:7500201-7500220 Msa0936640:CDS 45.0%
AGAACTGTAGGCATGGCAAT+AGG - chr6_3:7500231-7500250 None:intergenic 45.0%
AACTGACAGAACTGTAGGCA+TGG - chr6_3:7500238-7500257 None:intergenic 45.0%
GGACTCTTCGGGAAAACTTA+TGG - chr6_3:7500409-7500428 None:intergenic 45.0%
AAGTACTTGTGGGACTCTTC+GGG - chr6_3:7500420-7500439 None:intergenic 45.0%
GACAGCAATAGAAGAGATGG+CGG + chr6_3:7500534-7500553 Msa0936640:intron 45.0%
ACAGCAATAGAAGAGATGGC+GGG + chr6_3:7500535-7500554 Msa0936640:intron 45.0%
!! AATAGAAGAGATGGCGGGTA+TGG + chr6_3:7500540-7500559 Msa0936640:intron 45.0%
!! AGCATCTTGGTTTTCCACTC+TGG - chr6_3:7500781-7500800 None:intergenic 45.0%
GCTGCTATTATAGGGATGCT+AGG + chr6_3:7500807-7500826 Msa0936640:CDS 45.0%
GATGCTAGGTGATCCAAAAG+AGG + chr6_3:7500821-7500840 Msa0936640:CDS 45.0%
TAGCCTTCCCTTTCCTCATT+TGG + chr6_3:7500982-7501001 Msa0936640:intron 45.0%
! ACCAGCCCTTGCCTAATTTT+CGG - chr6_3:7501319-7501338 None:intergenic 45.0%
CGCTTGTCAGTAGGATTGAA+GGG - chr6_3:7501363-7501382 None:intergenic 45.0%
CCTTCAATCCTACTGACAAG+CGG + chr6_3:7501361-7501380 Msa0936640:CDS 45.0%
ATCGATAAATTTGCCGAGCG+AGG + chr6_3:7501589-7501608 Msa0936640:CDS 45.0%
TCGATAAATTTGCCGAGCGA+GGG + chr6_3:7501590-7501609 Msa0936640:CDS 45.0%
AAGAAAGCCAAGGAAGACCT+TGG + chr6_3:7501760-7501779 Msa0936640:CDS 45.0%
TAAACTGCCAAGGTCTTCCT+TGG - chr6_3:7501770-7501789 None:intergenic 45.0%
GGAAGACCTTGGCAGTTTAT+CGG + chr6_3:7501771-7501790 Msa0936640:CDS 45.0%
GAAGACCTTGGCAGTTTATC+GGG + chr6_3:7501772-7501791 Msa0936640:CDS 45.0%
TGTCTAGGTGGGTCGAATAA+AGG - chr6_3:7501804-7501823 None:intergenic 45.0%
CTGCACTATCATGTCTAGGT+GGG - chr6_3:7501815-7501834 None:intergenic 45.0%
TCTGCACTATCATGTCTAGG+TGG - chr6_3:7501816-7501835 None:intergenic 45.0%
GTCTCTGCACTATCATGTCT+AGG - chr6_3:7501819-7501838 None:intergenic 45.0%
TTAGGCCAGAACAAGGATGA+AGG + chr6_3:7502109-7502128 Msa0936640:CDS 45.0%
TCGTGAAACGTTTGCAAGCT+AGG + chr6_3:7502495-7502514 Msa0936640:CDS 45.0%
ATATGTGGAATGACCGGTGA+TGG + chr6_3:7502524-7502543 Msa0936640:CDS 45.0%
!! ATGCGAGGACTAGGTTGATA+CGG - chr6_3:7503108-7503127 None:intergenic 45.0%
CAGCTATCTGGATATGGAGA+TGG - chr6_3:7503558-7503577 None:intergenic 45.0%
CATCTCCATATCCAGATAGC+TGG + chr6_3:7503556-7503575 Msa0936640:CDS 45.0%
AGCTTCCAGCTATCTGGATA+TGG - chr6_3:7503564-7503583 None:intergenic 45.0%
ATATCCAGATAGCTGGAAGC+TGG + chr6_3:7503563-7503582 Msa0936640:CDS 45.0%
CTGGCAGAGATATTTACCAC+TGG + chr6_3:7503582-7503601 Msa0936640:CDS 45.0%
GCTGCTACAAGTAACAAACC+CGG - chr6_3:7504085-7504104 None:intergenic 45.0%
ATTGCTCAACTGGTGAGTAC+AGG + chr6_3:7504112-7504131 Msa0936640:intron 45.0%
CTGCAATTGAAGGGATTGGA+TGG + chr6_3:7504694-7504713 Msa0936640:intron 45.0%
GCAATTGAAGGGATTGGATG+GGG + chr6_3:7504696-7504715 Msa0936640:intron 45.0%
TTCGATACGTATTGAGTGGC+CGG + chr6_3:7504787-7504806 Msa0936640:CDS 45.0%
CAAAAACAAGATCCCAAGCC+CGG - chr6_3:7504809-7504828 None:intergenic 45.0%
AAAGACGAGCGGAAATTGCA+AGG + chr6_3:7505257-7505276 Msa0936640:CDS 45.0%
TAGAGAGTTGCACACACTCA+AGG + chr6_3:7505462-7505481 Msa0936640:CDS 45.0%
AGAGAGTTGCACACACTCAA+GGG + chr6_3:7505463-7505482 Msa0936640:CDS 45.0%
CAACAAAAGCTGCTGAGGAG+AGG + chr6_3:7498411-7498430 Msa0936640:CDS 50.0%
AAAAGCTGCTGAGGAGAGGT+TGG + chr6_3:7498415-7498434 Msa0936640:CDS 50.0%
! GAGGAGAGGTTGGCTATCTT+TGG + chr6_3:7498425-7498444 Msa0936640:CDS 50.0%
GTCAGTGTCAGTGTCATGTC+CGG + chr6_3:7498710-7498729 Msa0936640:intron 50.0%
GAATCCTCTCTCATGGGTGA+TGG + chr6_3:7498881-7498900 Msa0936640:CDS 50.0%
GATGGAAGCTGCAGCAATCA+TGG + chr6_3:7498899-7498918 Msa0936640:CDS 50.0%
GCTATTGCTTTGGCCAATGG+AGG + chr6_3:7498921-7498940 Msa0936640:CDS 50.0%
TCGGAAGCTTACTCCTCCAT+TGG - chr6_3:7498937-7498956 None:intergenic 50.0%
ACCGACGAAGTCTTGCCAAT+CGG - chr6_3:7499276-7499295 None:intergenic 50.0%
TCGCTTAGCGCCAAAAGCTA+AGG + chr6_3:7499379-7499398 Msa0936640:intron 50.0%
AGGTTCTTCGAGATGGGAGA+TGG + chr6_3:7499532-7499551 Msa0936640:intron 50.0%
GGTTCTTCGAGATGGGAGAT+GGG + chr6_3:7499533-7499552 Msa0936640:intron 50.0%
CAAGTAAACGAGCATCCGCA+GGG - chr6_3:7499623-7499642 None:intergenic 50.0%
TCAAGTAAACGAGCATCCGC+AGG - chr6_3:7499624-7499643 None:intergenic 50.0%
GCGGATGCTCGTTTACTTGA+AGG + chr6_3:7499624-7499643 Msa0936640:CDS 50.0%
CGGTTGTAGTCTGCACTTAC+AGG + chr6_3:7499758-7499777 Msa0936640:intron 50.0%
ATGAGCAGCCTTGCCAAAGA+AGG - chr6_3:7499888-7499907 None:intergenic 50.0%
! TCAAGTCGGGCATTTTCAGC+AGG + chr6_3:7499925-7499944 Msa0936640:CDS 50.0%
TGTCTACCTGCTGAGCTAAG+CGG - chr6_3:7500281-7500300 None:intergenic 50.0%
CGCAGATACCGTTGTTCTCA+TGG + chr6_3:7500743-7500762 Msa0936640:CDS 50.0%
AGGAAAGGGAAGGCTAGAGT+AGG - chr6_3:7500978-7500997 None:intergenic 50.0%
TCCGAAAATTAGGCAAGGGC+TGG + chr6_3:7501315-7501334 Msa0936640:intron 50.0%
CCGCTTGTCAGTAGGATTGA+AGG - chr6_3:7501364-7501383 None:intergenic 50.0%
ATGAGCCCGATAAACTGCCA+AGG - chr6_3:7501780-7501799 None:intergenic 50.0%
AAAGAAACAGGACGCCGTCT+AGG + chr6_3:7502052-7502071 Msa0936640:CDS 50.0%
! GGATTTGCCGGTGTTTTTCC+TGG + chr6_3:7502175-7502194 Msa0936640:CDS 50.0%
! TATTGCTCGACTGGTCAGCA+CGG - chr6_3:7502675-7502694 None:intergenic 50.0%
!! CTGGTCTTTTGTTGAGCGAC+CGG + chr6_3:7504063-7504082 Msa0936640:CDS 50.0%
! TGGTCTTTTGTTGAGCGACC+GGG + chr6_3:7504064-7504083 Msa0936640:CDS 50.0%
TTGAAGGGATTGGATGGGGT+TGG + chr6_3:7504700-7504719 Msa0936640:intron 50.0%
TGAAGGGATTGGATGGGGTT+GGG + chr6_3:7504701-7504720 Msa0936640:intron 50.0%
TCGATACGTATTGAGTGGCC+GGG + chr6_3:7504788-7504807 Msa0936640:CDS 50.0%
TGAACATCTTGGTCTCTGGC+GGG - chr6_3:7505189-7505208 None:intergenic 50.0%
CTGAACATCTTGGTCTCTGG+CGG - chr6_3:7505190-7505209 None:intergenic 50.0%
TCGCTGAACATCTTGGTCTC+TGG - chr6_3:7505193-7505212 None:intergenic 50.0%
TGTGCGTTCGCTGAACATCT+TGG - chr6_3:7505200-7505219 None:intergenic 50.0%
GCTTCCATCACCCATGAGAG+AGG - chr6_3:7498888-7498907 None:intergenic 55.0%
ACGAAGTCTTGCCAATCGGG+TGG - chr6_3:7499272-7499291 None:intergenic 55.0%
CCGACGAAGTCTTGCCAATC+GGG - chr6_3:7499275-7499294 None:intergenic 55.0%
CCCGATTGGCAAGACTTCGT+CGG + chr6_3:7499272-7499291 Msa0936640:CDS 55.0%
TCTTCGAGATGGGAGATGGG+TGG + chr6_3:7499536-7499555 Msa0936640:intron 55.0%
GAGTCTCTTCCGGTCACGAA+AGG + chr6_3:7499782-7499801 Msa0936640:CDS 55.0%
TCACTGGGACCTTTCGTGAC+CGG - chr6_3:7499794-7499813 None:intergenic 55.0%
ATCACACCGCTTAGCTCAGC+AGG + chr6_3:7500272-7500291 Msa0936640:CDS 55.0%
CCGAGCAGCCATGAGAACAA+CGG - chr6_3:7500754-7500773 None:intergenic 55.0%
CCGTTGTTCTCATGGCTGCT+CGG + chr6_3:7500751-7500770 Msa0936640:CDS 55.0%
CGTTGTTCTCATGGCTGCTC+GGG + chr6_3:7500752-7500771 Msa0936640:CDS 55.0%
! GGCAAGGGCTGGTATTCAAG+AGG + chr6_3:7501326-7501345 Msa0936640:intron 55.0%
AGAGCTGTCCGCTTGTCAGT+AGG - chr6_3:7501372-7501391 None:intergenic 55.0%
AATTTGCCGAGCGAGGGTTG+CGG + chr6_3:7501596-7501615 Msa0936640:CDS 55.0%
! GTCTCTTGCTGTAGCCTACC+AGG + chr6_3:7501618-7501637 Msa0936640:CDS 55.0%
AACAGGACGCCGTCTAGGAA+TGG + chr6_3:7502057-7502076 Msa0936640:CDS 55.0%
ACAGGACGCCGTCTAGGAAT+GGG + chr6_3:7502058-7502077 Msa0936640:CDS 55.0%
TCTGCCAGCTTCCAGCTATC+TGG - chr6_3:7503570-7503589 None:intergenic 55.0%
!! GGGGTTGGGCTGGTATTGTT+TGG + chr6_3:7504715-7504734 Msa0936640:intron 55.0%
TTAAATGGGCGCATGCGCAG+AGG + chr6_3:7505146-7505165 Msa0936640:CDS 55.0%
CATGCGCAGAGGACACTTCA+TGG + chr6_3:7505157-7505176 Msa0936640:CDS 55.0%
TCGAGATGGGAGATGGGTGG+AGG + chr6_3:7499539-7499558 Msa0936640:intron 60.0%
! CAGCAAAGGTGCACCAGAGC+AGG + chr6_3:7501428-7501447 Msa0936640:CDS 60.0%
AAGAGACCGCAACCCTCGCT+CGG - chr6_3:7501605-7501624 None:intergenic 60.0%
TTGTAACGCGGTCACGGAGC+TGG + chr6_3:7504044-7504063 Msa0936640:CDS 60.0%
ACGTATTGAGTGGCCGGGCT+TGG + chr6_3:7504793-7504812 Msa0936640:CDS 60.0%
CGTATTGAGTGGCCGGGCTT+GGG + chr6_3:7504794-7504813 Msa0936640:CDS 60.0%
GGGATTGGATGGGGTTGGGC+TGG + chr6_3:7504705-7504724 Msa0936640:intron 65.0%
GGCTGCTCGGGCTTCCAGAG+TGG + chr6_3:7500764-7500783 Msa0936640:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 7497900 7505501 7497900 ID=Msa0936640;Name=Msa0936640
chr6_3 mRNA 7497900 7505501 7497900 ID=Msa0936640-mRNA-1;Parent=Msa0936640;Name=Msa0936640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=105|0.47|0.35|1|0.78|0.75|20|0|788
chr6_3 exon 7497900 7498058 7497900 ID=Msa0936640-mRNA-1:exon:2446;Parent=Msa0936640-mRNA-1
chr6_3 exon 7498353 7498472 7498353 ID=Msa0936640-mRNA-1:exon:2447;Parent=Msa0936640-mRNA-1
chr6_3 exon 7498846 7498944 7498846 ID=Msa0936640-mRNA-1:exon:2448;Parent=Msa0936640-mRNA-1
chr6_3 exon 7499263 7499329 7499263 ID=Msa0936640-mRNA-1:exon:2449;Parent=Msa0936640-mRNA-1
chr6_3 exon 7499610 7499668 7499610 ID=Msa0936640-mRNA-1:exon:2450;Parent=Msa0936640-mRNA-1
chr6_3 exon 7499767 7499946 7499767 ID=Msa0936640-mRNA-1:exon:2451;Parent=Msa0936640-mRNA-1
chr6_3 exon 7500087 7500293 7500087 ID=Msa0936640-mRNA-1:exon:2452;Parent=Msa0936640-mRNA-1
chr6_3 exon 7500723 7500842 7500723 ID=Msa0936640-mRNA-1:exon:2453;Parent=Msa0936640-mRNA-1
chr6_3 exon 7501327 7501449 7501327 ID=Msa0936640-mRNA-1:exon:2454;Parent=Msa0936640-mRNA-1
chr6_3 exon 7501535 7501639 7501535 ID=Msa0936640-mRNA-1:exon:2455;Parent=Msa0936640-mRNA-1
chr6_3 exon 7501741 7501843 7501741 ID=Msa0936640-mRNA-1:exon:2456;Parent=Msa0936640-mRNA-1
chr6_3 exon 7502032 7502196 7502032 ID=Msa0936640-mRNA-1:exon:2457;Parent=Msa0936640-mRNA-1
chr6_3 exon 7502480 7502718 7502480 ID=Msa0936640-mRNA-1:exon:2458;Parent=Msa0936640-mRNA-1
chr6_3 exon 7502808 7502840 7502808 ID=Msa0936640-mRNA-1:exon:2459;Parent=Msa0936640-mRNA-1
chr6_3 exon 7502926 7503007 7502926 ID=Msa0936640-mRNA-1:exon:2460;Parent=Msa0936640-mRNA-1
chr6_3 exon 7503520 7503680 7503520 ID=Msa0936640-mRNA-1:exon:2461;Parent=Msa0936640-mRNA-1
chr6_3 exon 7503938 7504123 7503938 ID=Msa0936640-mRNA-1:exon:2462;Parent=Msa0936640-mRNA-1
chr6_3 exon 7504780 7504836 7504780 ID=Msa0936640-mRNA-1:exon:2463;Parent=Msa0936640-mRNA-1
chr6_3 exon 7505118 7505278 7505118 ID=Msa0936640-mRNA-1:exon:2464;Parent=Msa0936640-mRNA-1
chr6_3 exon 7505459 7505501 7505459 ID=Msa0936640-mRNA-1:exon:2465;Parent=Msa0936640-mRNA-1
chr6_3 five_prime_UTR 7497900 7498004 7497900 ID=Msa0936640-mRNA-1:five_prime_utr;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7498005 7498058 7498005 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7498353 7498472 7498353 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7498846 7498944 7498846 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7499263 7499329 7499263 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7499610 7499668 7499610 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7499767 7499946 7499767 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7500087 7500293 7500087 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7500723 7500842 7500723 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7501327 7501449 7501327 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7501535 7501639 7501535 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7501741 7501843 7501741 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7502032 7502196 7502032 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7502480 7502718 7502480 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7502808 7502840 7502808 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7502926 7503007 7502926 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7503520 7503680 7503520 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7503938 7504123 7503938 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7504780 7504836 7504780 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7505118 7505278 7505118 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
chr6_3 CDS 7505459 7505501 7505459 ID=Msa0936640-mRNA-1:cds;Parent=Msa0936640-mRNA-1
Gene Sequence

>Msa0936640

ATGGCTGATAAAGAAGAAGCCATGCATGCTGTTTTGACAGAAGCTGTTGATTTGGAAAATGTGCCAATTGAGGAAGTGTTTCAAACTTTGAGGTGTGATTCAAATGGACTCTCAACAAAAGCTGCTGAGGAGAGGTTGGCTATCTTTGGTCACAACAAACTTGAGGAGAAGCAGGAAAGCAAGTTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTCTCATGGGTGATGGAAGCTGCAGCAATCATGGCTATTGCTTTGGCCAATGGAGGAAATAAACCACCCGATTGGCAAGACTTCGTCGGTATCATCACACTTCTTATAATCAATTCCACAATAAGTGATATTATCCCTGCGGATGCTCGTTTACTTGAAGGTGATCCGTTGAAGATTGATCAGTCTGCACTTACAGGTGAGTCTCTTCCGGTCACGAAAGGTCCCAGTGACAGTGTTTATTCAGGCTCTACATGCAAACAGGGAGAGATAGAAGCAGTTGTTATTGCAACCGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTAGTCGACTCCACAAATCAAGTCGGGCATTTTCAGCAGGTCCTAACTTCAATTGGGAACTTTTGTATATGTTCAATTGCTGTGGGAATGATAGTTGAGATCATTGTCATGTACCCAATTCAACACCGAAAATATCGTCCGGGGATTGATAATCTACTTGTGCTTCTCATTGGAGGAATTCCTATTGCCATGCCTACAGTTCTGTCAGTTACAATGGCAATCGGATCACACCGCTTAGCTCAGCAGATTTTTGCTAAAGGAGTTGACGCAGATACCGTTGTTCTCATGGCTGCTCGGGCTTCCAGAGTGGAAAACCAAGATGCTATAGATGCTGCTATTATAGGGATGCTAGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTTCTTCCCTTCAATCCTACTGACAAGCGGACAGCTCTAACTTATATAGACAGTGAACGTAAAATGCATCGTGTCAGCAAAGGTGCACCAGAGCAGATTTTGAATCTTGCACATAATAAGTCAGAGATAGAACGCAGAGTTCATGCAGTCATCGATAAATTTGCCGAGCGAGGGTTGCGGTCTCTTGCTGTAGCCTACCAGGAAGTTCCTGATGGAAAGAAAGAAAGCCAAGGAAGACCTTGGCAGTTTATCGGGCTCATGCCTTTATTCGACCCACCTAGACATGATAGTGCAGAGACGATAAGTGATCAACTATCAATAGCGAAAGAAACAGGACGCCGTCTAGGAATGGGAACTAACATGTACCCTTCATCAGCTTTATTAGGCCAGAACAAGGATGAAGGAATTGGCCTCTTACCAGTTGATGATTTGATTGAAAAAGCTGATGGATTTGCCGGTGTTTTTCCTGAACACAAATATGAGATCGTGAAACGTTTGCAAGCTAGGAAACACATATGTGGAATGACCGGTGATGGTGTTAATGATGCTCCTGCTCTTAAGAAAGCAGATATTGGAATAGCTGTTGACGATGCAACTGATGCAGCTCGTAGTGCTTCCGACATTGTTCTAACAGAACCAGGTCTCAGTGTTATCATTAGCGCCGTGCTGACCAGTCGAGCAATATTCCAAAGAATGAAGAATTACACAATTTATGCAGTTTCGATCACGATCCGTATTGTACTTGGTTTCATGTTACTGGCACTCATATGGCAATTTGATTTTCCACCATTCATGGTACTGATTATTGCTATTCTTAATGATGGTACAATTATGACAATATCTAAGGATAGGGTTAAGCCATCTCCATATCCAGATAGCTGGAAGCTGGCAGAGATATTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTAGCACATTTGGAGTATCAAGTCTTCAGAAAGAGGATAGGGATGATATTAGAAAGCTTGCCTCAGCAATATACCTTCAAGTTAGTACAATTAGTCAGGCCCTTATATTTGTAACGCGGTCACGGAGCTGGTCTTTTGTTGAGCGACCGGGTTTGTTACTTGTAGCAGCTTTTGTCATTGCTCAACTGGTCATAATTCGATACGTATTGAGTGGCCGGGCTTGGGATCTTGTTTTTGATCAAAGGAAAGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCGCATGCGCAGAGGACACTTCATGGTCTTCACCCGCCAGAGACCAAGATGTTCAGCGAACGCACAAATTATACAGAGCTTAATCAGATGGCTGAAGAAGCTAAAAGACGAGCGGAAATTGCAAGAATTAGAGAGTTGCACACACTCAAGGGCCATGTTGAGTCAGTG
Protein sequence

>Msa0936640

MADKEEAMHAVLTEAVDLENVPIEEVFQTLRCDSNGLSTKAAEERLAIFGHNKLEEKQESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGNKPPDWQDFVGIITLLIINSTISDIIPADARLLEGDPLKIDQSALTGESLPVTKGPSDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQQVLTSIGNFCICSIAVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQIFAKGVDADTVVLMAARASRVENQDAIDAAIIGMLGDPKEARAGIQEVHFLPFNPTDKRTALTYIDSERKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGKKESQGRPWQFIGLMPLFDPPRHDSAETISDQLSIAKETGRRLGMGTNMYPSSALLGQNKDEGIGLLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPSTFGVSSLQKEDRDDIRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFVIAQLVIIRYVLSGRAWDLVFDQRKDFGKEERELKWAHAQRTLHGLHPPETKMFSERTNYTELNQMAEEAKRRAEIARIRELHTLKGHVESV