AlfalfaGEDB | Msa0908780

M. sativa cultivar zhongmu-4 / Msa0908780

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908780	XP_024626395.1	94.393	428	3	1	1	428	1	407	0.0	826

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908780	sp\|P43293\|PBL11_ARATH	62.559	422	123	3	1	422	1	387	0.0	548

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0908780	Msa1023310	0.813343	2.685410e-51	-8.615850e-47
Msa0908780	Msa1060970	0.958240	3.836261e-116	-8.615850e-47
Msa0908780	Msa1062040	0.804901	1.729222e-49	-8.615850e-47
Msa0908780	Msa1107200	0.804439	2.158741e-49	-8.615850e-47
Msa0908780	Msa1180720	0.815463	9.128134e-52	-8.615850e-47
Msa0908780	Msa1231710	0.805025	1.629025e-49	-8.615850e-47
Msa0908780	Msa1312440	0.804523	2.073701e-49	-8.615850e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908780	MtrunA17_Chr7g0238671	94.393	428	3	1	1	428	1	407	0.0	826
Msa0908780	MtrunA17_Chr2g0328171	65.287	435	116	4	1	428	1	407	0.0	573
Msa0908780	MtrunA17_Chr5g0435211	66.754	382	104	3	1	380	1	361	0.0	535
Msa0908780	MtrunA17_Chr3g0111631	65.803	386	108	3	1	384	3	366	0.0	518
Msa0908780	MtrunA17_Chr4g0031541	57.576	429	146	6	1	426	9	404	5.05e-173	490
Msa0908780	MtrunA17_Chr2g0328211	61.842	380	110	4	1	379	1	346	4.65e-170	480
Msa0908780	MtrunA17_Chr5g0416311	59.744	390	131	2	1	387	1	367	3.29e-169	480
Msa0908780	MtrunA17_Chr4g0031561	57.143	441	139	6	1	426	9	414	6.80e-164	467
Msa0908780	MtrunA17_Chr4g0031571	55.305	443	146	7	1	426	9	416	9.48e-163	464
Msa0908780	MtrunA17_Chr4g0031591	55.000	440	147	7	1	425	9	412	1.09e-162	464

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908780	AT5G02290.2	62.559	422	123	3	1	422	1	387	0.0	548
Msa0908780	AT5G02290.1	62.559	422	123	3	1	422	1	387	0.0	548
Msa0908780	AT2G28930.3	62.471	437	133	4	1	428	1	415	0.0	542
Msa0908780	AT2G28930.2	62.471	437	130	5	1	428	1	412	0.0	538
Msa0908780	AT1G07570.1	61.785	437	131	5	1	428	1	410	0.0	532
Msa0908780	AT1G07570.5	61.785	437	131	5	1	428	1	410	0.0	532
Msa0908780	AT1G07570.2	61.785	437	131	5	1	428	1	410	0.0	532
Msa0908780	AT1G07570.3	63.855	415	120	4	23	428	28	421	0.0	525
Msa0908780	AT2G28930.1	64.899	396	109	3	42	428	49	423	0.0	525
Msa0908780	AT2G39660.1	60.367	381	124	2	1	381	1	354	1.14e-166	474

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 136 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGCGTTTGTTGGAT+AGG	0.440029	6_2:+9853176	None:intergenic
AAACTGTAGCATTGTCTATA+TGG	0.275964	6_2:-9852660	Msa0908780:three_prime_UTR
AACCTCGGCCACAATGCATC+CGG	0.455051	6_2:-9852956	Msa0908780:CDS
AAGAGAAAGTTTGTTAATGG+AGG	0.525010	6_2:+9856609	None:intergenic
AAGAGCGATGTATATAGTTT+TGG	0.325980	6_2:-9853292	Msa0908780:CDS
AAGGTTTGGCCCATTCGACT+AGG	0.557781	6_2:+9853200	None:intergenic
AAGTCACGGTATATGACTTT+AGG	0.287225	6_2:+9854202	None:intergenic
AATAAGGCCAAATATGGACG+AGG	0.672932	6_2:-9853056	Msa0908780:CDS
AATAATACCCATTCCTGGTT+TGG	0.352579	6_2:+9855139	None:intergenic
ACACGGGTCATGGGAACCCG+TGG	0.619758	6_2:-9853982	Msa0908780:CDS

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCTAGGAAAGAAGAAGAAA+GGG	+	chr6_2:9852534-9852553	None:intergenic	30.0%
TTCATGAAATGGGTACAAAA+GGG	+	chr6_2:9852617-9852636	None:intergenic	30.0%
ATTCATGAAATGGGTACAAA+AGG	+	chr6_2:9852618-9852637	None:intergenic	30.0%
CAAGAATATTCCATAGATTC+AGG	+	chr6_2:9852874-9852893	None:intergenic	30.0%
TGGAATATTCTTGAGATCTT+TGG	-	chr6_2:9852881-9852900	Msa0908780:exon	30.0%
TGTGAGAGTTTATGTGAATT+TGG	-	chr6_2:9853245-9853264	Msa0908780:CDS	30.0%
GTGAGAGTTTATGTGAATTT+GGG	-	chr6_2:9853246-9853265	Msa0908780:CDS	30.0%
GTACGTATCATTTCTTCTTT+GGG	-	chr6_2:9854051-9854070	Msa0908780:CDS	30.0%
TTGAATGTAACTACATGAGT+CGG	+	chr6_2:9854213-9854232	None:intergenic	30.0%
TTGTTCTCCTTTGATCTTAT+TGG	-	chr6_2:9854378-9854397	Msa0908780:intron	30.0%

Showing 1 to 10 of 292 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	9852424	9856711	9852424	ID=Msa0908780;Name=Msa0908780
chr6_2	mRNA	9852424	9856711	9852424	ID=Msa0908780-mRNA-1;Parent=Msa0908780;Name=Msa0908780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=273\|0.8\|0.66\|1\|1\|1\|6\|459\|428
chr6_2	exon	9852424	9853328	9852424	ID=Msa0908780-mRNA-1:exon:2441;Parent=Msa0908780-mRNA-1
chr6_2	exon	9853953	9854076	9853953	ID=Msa0908780-mRNA-1:exon:2440;Parent=Msa0908780-mRNA-1
chr6_2	exon	9854174	9854375	9854174	ID=Msa0908780-mRNA-1:exon:2439;Parent=Msa0908780-mRNA-1
chr6_2	exon	9854454	9854593	9854454	ID=Msa0908780-mRNA-1:exon:2438;Parent=Msa0908780-mRNA-1
chr6_2	exon	9855085	9855407	9855085	ID=Msa0908780-mRNA-1:exon:2437;Parent=Msa0908780-mRNA-1
chr6_2	exon	9856387	9856711	9856387	ID=Msa0908780-mRNA-1:exon:2436;Parent=Msa0908780-mRNA-1
chr6_2	five_prime_UTR	9856439	9856711	9856439	ID=Msa0908780-mRNA-1:five_prime_utr;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9856387	9856438	9856387	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9855085	9855407	9855085	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9854454	9854593	9854454	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9854174	9854375	9854174	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9853953	9854076	9853953	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	CDS	9852883	9853328	9852883	ID=Msa0908780-mRNA-1:cds;Parent=Msa0908780-mRNA-1
chr6_2	three_prime_UTR	9852424	9852882	9852424	ID=Msa0908780-mRNA-1:three_prime_utr;Parent=Msa0908780-mRNA-1

Gene Sequence

>Msa0908780

ATGGGTGCTTGTTGGAGTAATAAGGTTAAGTCTGTTAGTCCTTCAAACACAGGGTTCACTTCAAGAAGTGTAAGCAGAAGTGGCCATGACATCAGCTCAACTAGCAGGAACTCATCAGCCTCTATATCAGTCACTTCTCGAAGTGAGGGTGAAATCTTGCAGTCTTCCAACTTGAAAAGCTTCAGCTACAATGAAGTCAGAGCGGCTACGAGAAATTTCCGGCCAGACAGTGTCTTAGGGGAAGGTGGTTTTGGTTCAGTTTTTAAAGGCTGGATTGATGAGCATTCACATGCTGCAACCAAACCAGGAATGGGTATTATTGTTGCTGTGAAGAGGCTTAACCAAGATGGGCATCAGGGTCACAGAGAATGGTTGGCTGAAATCAACTATCTCGGGCAACTTCAGCATCCTAATCTTGTCAAATTAATAGGATACTGCTTTGAAGATGAACATCGGCTCCTCGTTTACGAGTTTATGCCAAAGGGAAGCATGGAAAATCATCTTTTTAGGCGTGATGACTTAGTCCTATATGTTCTAATACTAACGGCGCTTGAAATCGTCATCTTCAACACAGGAGGTTCGTATTTTCAGCCATTCTCTTGGAGTTTGCGAATGAAAATTGCCCTCGGAGCTGCAAAAGGCCTTGCTTTTCTCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAAACTTCGAATATACTGCTCGATTCTAACTATGATGCTAAACTTTCTGATTTTGGGTTGGCTAGAGATGGACCAACTGGAGATAAAAGTCATGTCTCTACACGGGTCATGGGAACCCGTGGATATGCGGCACCAGAGTATCTAGCAACAGGCCATCTTACTGCAAAGAGCGATGTATATAGTTTTGGAGTAGTTCTTCTAGAAATTATATCAGGAAGACGTGCCATAGACAAGAACCTGCCATCCGGAGAACACAACCTAGTCGAATGGGCCAAACCTTACCTATCCAACAAACGCAGAGTTTTTCGCGTAATGGATCCACGACTCGAAGGTCAATATTCACACAGCCGAGCTCATGCTGCAGCTGCTCTTGCTTCACAATGTCTTTCGGTCGAGCCCAGAATAAGGCCAAATATGGACGAGGTTGTTAAAACATTGGAGCAGCTTCAGGAACCAAAGGATGCTCAGAAGAAAGGTTCTGATCACCGCGCACGCAATTCCAACCTCGGCCACAATGCATCCGGCAAAGGTAATGCGGATGCTACTAGAAAGGCTTCTGCTTATCCTAGACCGTCTGCTTCTCTCCTTCATGTTTGA

Protein sequence

>Msa0908780

MGACWSNKVKSVSPSNTGFTSRSVSRSGHDISSTSRNSSASISVTSRSEGEILQSSNLKSFSYNEVRAATRNFRPDSVLGEGGFGSVFKGWIDEHSHAATKPGMGIIVAVKRLNQDGHQGHREWLAEINYLGQLQHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRDDLVLYVLILTALEIVIFNTGGSYFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDSNYDAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTAKSDVYSFGVVLLEIISGRRAIDKNLPSGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSHSRAHAAAALASQCLSVEPRIRPNMDEVVKTLEQLQEPKDAQKKGSDHRARNSNLGHNASGKGNADATRKASAYPRPSASLLHV*