AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1062040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062040 MtrunA17_Chr7g0240561 95.536 224 10 0 1 224 1 224 2.82e-158 437
Msa1062040 MtrunA17_Chr7g0240581 80.804 224 43 0 1 224 1 224 1.78e-134 377
Msa1062040 MtrunA17_Chr7g0240551 80.804 224 43 0 1 224 1 224 3.67e-130 365
Msa1062040 MtrunA17_Chr7g0240511 79.018 224 42 1 1 224 1 219 8.03e-125 352
Msa1062040 MtrunA17_Chr7g0240531 78.125 224 49 0 1 224 1 224 1.97e-124 351
Msa1062040 MtrunA17_Chr7g0240541 76.786 224 52 0 1 224 1 224 5.90e-124 350
Msa1062040 MtrunA17_Chr7g0240521 79.111 225 46 1 1 224 8 232 7.15e-117 332
Msa1062040 MtrunA17_Chr7g0240631 69.507 223 68 0 1 223 1 223 9.79e-117 332
Msa1062040 MtrunA17_Chr7g0240641 69.058 223 69 0 1 223 1 223 9.33e-115 327
Msa1062040 MtrunA17_Chr7g0240681 69.333 225 68 1 1 224 1 225 1.31e-113 324
Msa1062040 MtrunA17_Chr7g0240611 69.955 223 63 1 1 223 1 219 3.15e-113 323
Msa1062040 MtrunA17_Chr4g0008791 63.229 223 82 0 1 223 1 223 1.49e-105 303
Msa1062040 MtrunA17_Chr7g0240691 64.384 219 77 1 6 223 36 254 2.53e-104 301
Msa1062040 MtrunA17_Chr7g0240651 67.117 222 69 1 1 222 1 218 7.18e-98 284
Msa1062040 MtrunA17_Chr7g0240671 66.184 207 66 1 8 214 5 207 4.78e-97 282
Msa1062040 MtrunA17_Chr4g0008781 63.256 215 77 2 2 215 3 216 1.71e-96 280
Msa1062040 MtrunA17_Chr7g0240661 66.822 214 67 1 1 214 1 210 3.16e-93 272
Msa1062040 MtrunA17_Chr6g0483141 48.077 208 106 2 7 213 3 209 8.38e-66 202
Msa1062040 MtrunA17_Chr3g0132581 47.727 220 113 2 5 223 3 221 3.00e-65 201
Msa1062040 MtrunA17_Chr1g0196771 47.059 221 112 3 5 222 1 219 1.80e-64 199
Msa1062040 MtrunA17_Chr8g0379561 47.926 217 110 3 1 216 1 215 3.16e-63 196
Msa1062040 MtrunA17_Chr8g0379581 45.622 217 116 2 4 219 2 217 1.39e-61 192
Msa1062040 MtrunA17_Chr1g0212301 45.000 220 114 3 7 221 3 220 2.40e-60 189
Msa1062040 MtrunA17_Chr5g0417011 42.793 222 119 3 1 215 1 221 9.71e-57 179
Msa1062040 MtrunA17_Chr1g0196691 42.534 221 122 3 7 223 28 247 2.18e-56 179
Msa1062040 MtrunA17_Chr4g0029341 42.056 214 118 3 6 215 3 214 5.25e-56 177
Msa1062040 MtrunA17_Chr1g0196661 42.857 224 118 5 7 224 3 222 1.07e-55 177
Msa1062040 MtrunA17_Chr1g0196721 41.818 220 122 3 8 223 3 220 1.63e-53 171
Msa1062040 MtrunA17_Chr1g0196711 42.381 210 115 3 7 212 3 210 3.15e-52 168
Msa1062040 MtrunA17_Chr8g0363751 43.836 219 115 5 5 215 3 221 4.78e-50 162
Msa1062040 MtrunA17_Chr5g0415411 42.273 220 117 4 1 212 1 218 4.57e-49 160
Msa1062040 MtrunA17_Chr2g0312751 37.619 210 126 4 6 213 3 209 4.35e-44 147
Msa1062040 MtrunA17_Chr2g0312771 37.619 210 126 4 6 213 3 209 1.41e-43 145
Msa1062040 MtrunA17_Chr3g0107731 42.211 199 110 5 16 212 18 213 2.28e-42 143
Msa1062040 MtrunA17_Chr2g0312731 38.350 206 122 4 6 209 3 205 3.09e-42 142
Msa1062040 MtrunA17_Chr2g0312791 38.863 211 124 4 6 213 3 211 3.10e-42 142
Msa1062040 MtrunA17_Chr2g0312781 36.842 209 127 4 1 207 15 220 2.43e-41 140
Msa1062040 MtrunA17_Chr4g0069471 46.067 178 92 4 3 177 21 197 2.63e-41 139
Msa1062040 MtrunA17_Chr2g0312721 39.906 213 117 7 6 213 3 209 1.64e-40 138
Msa1062040 MtrunA17_Chr2g0312811 38.679 212 123 5 6 213 3 211 4.70e-40 137
Msa1062040 MtrunA17_Chr3g0107741 38.863 211 124 5 4 212 6 213 5.10e-40 137
Msa1062040 MtrunA17_Chr8g0391631 49.677 155 70 5 7 153 21 175 2.59e-39 133
Msa1062040 MtrunA17_Chr8g0357211 37.900 219 126 6 6 218 3 217 1.69e-38 132
Msa1062040 MtrunA17_Chr8g0357241 37.900 219 126 6 6 218 3 217 1.97e-38 132
Msa1062040 MtrunA17_Chr2g0312681 37.500 208 125 4 7 212 4 208 1.08e-37 130
Msa1062040 MtrunA17_Chr2g0312691 37.500 216 130 4 7 220 4 216 2.38e-37 130
Msa1062040 MtrunA17_Chr5g0433801 36.321 212 130 4 3 212 2 210 9.88e-36 125
Msa1062040 MtrunA17_Chr2g0312711 39.500 200 115 5 7 204 4 199 1.87e-32 117
Msa1062040 MtrunA17_Chr2g0313561 45.714 70 36 2 51 119 2 70 3.90e-16 70.5
Msa1062040 MtrunA17_Chr4g0076681 30.000 230 129 9 1 207 1 221 1.11e-12 65.1
Msa1062040 MtrunA17_Chr1g0181861 26.667 225 131 8 8 217 28 233 1.45e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1062040 AT3G09270.1 54.018 224 98 5 4 223 2 224 4.47e-76 229
Msa1062040 AT2G29420.1 49.315 219 109 2 3 220 5 222 9.69e-75 226
Msa1062040 AT2G29450.1 49.275 207 103 2 3 207 2 208 1.77e-60 189
Msa1062040 AT2G29490.1 48.325 209 105 3 1 207 1 208 3.71e-60 189
Msa1062040 AT2G29480.1 47.368 209 107 3 1 207 1 208 4.98e-58 183
Msa1062040 AT2G29460.1 45.333 225 120 3 1 223 1 224 1.56e-57 182
Msa1062040 AT2G29470.1 46.190 210 109 4 1 207 1 209 1.70e-56 179
Msa1062040 AT2G29440.1 46.411 209 108 4 1 207 1 207 1.38e-55 177
Msa1062040 AT1G69930.1 38.938 226 132 3 2 221 7 232 9.70e-50 162
Msa1062040 AT1G59700.1 44.037 218 114 4 5 214 4 221 1.58e-48 159
Msa1062040 AT1G10370.1 40.724 221 122 4 1 214 1 219 2.65e-47 156
Msa1062040 AT1G59670.1 42.202 218 118 4 5 214 4 221 3.28e-47 155
Msa1062040 AT1G74590.1 39.545 220 126 3 1 214 1 219 4.81e-47 155
Msa1062040 AT1G78320.1 40.865 208 118 4 5 210 2 206 5.86e-47 155
Msa1062040 AT5G62480.1 39.819 221 122 4 5 215 6 225 2.04e-46 154
Msa1062040 AT1G78340.1 42.105 209 116 4 6 212 3 208 1.07e-45 151
Msa1062040 AT1G27130.1 36.889 225 133 4 1 217 1 224 2.89e-45 150
Msa1062040 AT1G78370.1 40.201 199 114 4 16 212 13 208 1.05e-43 146
Msa1062040 AT1G10360.1 37.037 216 129 3 6 214 4 219 1.39e-43 146
Msa1062040 AT1G78380.1 39.904 208 120 4 7 212 4 208 1.50e-43 146
Msa1062040 AT1G17170.1 38.710 217 127 5 6 220 3 215 2.07e-43 145
Msa1062040 AT1G27140.1 36.564 227 134 4 1 218 1 226 4.22e-43 145
Msa1062040 AT1G69920.1 37.118 229 130 5 1 217 26 252 2.37e-42 144
Msa1062040 AT1G17190.1 42.487 193 104 5 1 191 1 188 3.09e-41 140
Msa1062040 AT1G78360.1 40.191 209 119 5 7 212 4 209 8.27e-40 136
Msa1062040 AT1G17180.1 37.799 209 125 4 6 212 3 208 1.81e-39 135
Msa1062040 AT3G43800.1 37.198 207 121 6 4 204 2 205 1.59e-38 133
Msa1062040 AT1G53680.1 36.667 210 128 4 1 207 1 208 9.92e-38 131
Msa1062040 AT1G78320.2 32.850 207 109 4 5 210 2 179 9.82e-29 107
Msa1062040 AT5G62480.3 31.364 220 115 4 5 215 6 198 1.06e-27 105
Msa1062040 AT5G62480.2 31.364 220 116 4 5 215 6 199 1.14e-27 105
Msa1062040 AT2G02380.1 28.704 216 133 7 5 207 9 216 3.61e-14 69.3
Msa1062040 AT2G02390.3 28.444 225 133 7 3 207 4 220 5.59e-13 66.2
Msa1062040 AT2G02390.1 29.358 218 133 7 3 207 4 213 7.91e-13 65.9

Find 52 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCTCGTTTC+TGG 0.160272 7_2:+52543521 Msa1062040:CDS
TAAAATTTCCATGGGACTTA+TGG 0.202862 7_2:+52544325 Msa1062040:three_prime_UTR
ATTTCAACCCTTGTAGAAAA+TGG 0.235130 7_2:-52543292 None:intergenic
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7_2:-52543397 None:intergenic
CCTGTTACTTCTTGTACAAT+AGG 0.286054 7_2:-52544026 None:intergenic
TTGGGTGGTTGTTGAATTCT+TGG 0.290435 7_2:-52544097 None:intergenic
GAGCTCAAGGGCAAGTTCTT+TGG 0.302605 7_2:+52543948 Msa1062040:CDS
TCCATGGGACTTATGGCTTA+TGG 0.305487 7_2:+52544332 Msa1062040:three_prime_UTR
GCCTCGTAGAGAAGGGCTTT+TGG 0.332731 7_2:+52544136 Msa1062040:CDS
TATATTGAGCCTTGGATTGT+AGG 0.355348 7_2:+52544296 Msa1062040:three_prime_UTR
TAAGGATCAGAAGGTAAGAT+TGG 0.370607 7_2:-52543496 None:intergenic
AATTAGCATAGAAGTATATT+CGG 0.378495 7_2:-52544410 None:intergenic
GTTCCTGTATTAGTTCATAA+TGG 0.400419 7_2:+52543412 Msa1062040:CDS
CACTAAGATGGCATCAAATC+AGG 0.403482 7_2:+52543237 Msa1062040:exon
TTCTTTGGTGGAGATGAGAT+TGG 0.406091 7_2:+52543963 Msa1062040:CDS
CCTATTGTACAAGAAGTAAC+AGG 0.429315 7_2:+52544026 Msa1062040:CDS
GTCCAAGTTCATAGATGATA+AGG 0.434027 7_2:+52543543 Msa1062040:CDS
CTGTTACTTCTTGTACAATA+GGG 0.437463 7_2:-52544025 None:intergenic
TGGCTCCAATTGTAAAGCTT+AGG 0.444725 7_2:-52544077 None:intergenic
AATTTCCTAAGCTTTACAAT+TGG 0.445365 7_2:+52544072 Msa1062040:CDS
TGAAATAGCTCTAAAATTGA+AGG 0.446842 7_2:+52543309 Msa1062040:CDS
CAAATATGAGGAAGAAAAGC+AGG 0.457444 7_2:+52543342 Msa1062040:CDS
TACCTTATCATCTATGAACT+TGG 0.459673 7_2:-52543545 None:intergenic
AAATATTGACTAATGGCTCT+TGG 0.474043 7_2:+52544463 Msa1062040:three_prime_UTR
GAAAATTTGCCTCGTAGAGA+AGG 0.475442 7_2:+52544128 Msa1062040:CDS
AAATTAGATATATTGAGCCT+TGG 0.491800 7_2:+52544288 Msa1062040:three_prime_UTR
TTGCCATTATGAACTAATAC+AGG 0.495358 7_2:-52543415 None:intergenic
ATCACAAGTGACTCTGCTAT+AGG 0.496284 7_2:-52543439 None:intergenic
CTCAAGGGCAAGTTCTTTGG+TGG 0.497594 7_2:+52543951 Msa1062040:CDS
TAAGATCTACTTATATATAG+AGG 0.498504 7_2:-52543167 None:intergenic
TTGAATATATTGATGAGACT+TGG 0.500568 7_2:+52543464 Msa1062040:CDS
AGGTTGTAATAAAATTTCCA+TGG 0.510142 7_2:+52544316 Msa1062040:three_prime_UTR
TTCATAACGAGCTTTGAAGA+AGG 0.517849 7_2:-52544159 None:intergenic
GGGTGTTGAATACAAATATG+AGG 0.518356 7_2:+52543330 Msa1062040:CDS
AAATAGTTGAAGCACTAAGA+TGG 0.527927 7_2:+52543225 Msa1062040:exon
TTATTACAACCTACAATCCA+AGG 0.531133 7_2:-52544305 None:intergenic
TGATCCTTATAAAAGAGCCT+TGG 0.539754 7_2:+52543510 Msa1062040:CDS
AAAATTTGCCTCGTAGAGAA+GGG 0.551755 7_2:+52544129 Msa1062040:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.554660 7_2:+52543935 Msa1062040:CDS
CAGGAACTTTCTTATAAACA+GGG 0.564477 7_2:-52543396 None:intergenic
TCCATAAGCCATAAGTCCCA+TGG 0.566196 7_2:-52544333 None:intergenic
GGTTGTAATAAAATTTCCAT+GGG 0.566256 7_2:+52544317 Msa1062040:three_prime_UTR
GAAATAGCTCTAAAATTGAA+GGG 0.600047 7_2:+52543310 Msa1062040:CDS
CAACAACCACCCAATTGTCA+AGG 0.606941 7_2:+52544106 Msa1062040:CDS
TTTCTTGAGAATGAGCTCAA+GGG 0.611348 7_2:+52543936 Msa1062040:CDS
AAATATGAGGAAGAAAAGCA+GGG 0.615123 7_2:+52543343 Msa1062040:CDS
CTTATGGAAGTATAATGAGA+GGG 0.634339 7_2:+52544348 Msa1062040:three_prime_UTR
GCTTATGGAAGTATAATGAG+AGG 0.638265 7_2:+52544347 Msa1062040:three_prime_UTR
GCCAAAAGCCCTTCTCTACG+AGG 0.649932 7_2:-52544137 None:intergenic
ACCAGTGTATGATTCCTGCA+TGG 0.670185 7_2:+52543844 Msa1062040:intron
CTTGGACCAGAAACGAGCCA+AGG 0.694386 7_2:-52543527 None:intergenic
AATATGAGGAAGAAAAGCAG+GGG 0.696106 7_2:+52543344 Msa1062040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTCTTTTTTTTTTAA+TGG - chr7_2:52543658-52543677 None:intergenic 10.0%
!!! CTTTTTTCTTTTTTTTTTAA+TGG - chr7_2:52543658-52543677 None:intergenic 10.0%
!!! TTTGAATATTGATTAGAAAA+AGG + chr7_2:52543703-52543722 Msa1062040:intron 15.0%
!!! TTGAATATTGATTAGAAAAA+GGG + chr7_2:52543704-52543723 Msa1062040:intron 15.0%
!! TAATCATATTTGAGAAATAT+TGG - chr7_2:52543731-52543750 None:intergenic 15.0%
!! TTAAGGTCATTATAAAAATT+AGG - chr7_2:52543816-52543835 None:intergenic 15.0%
!!! TTTGAATATTGATTAGAAAA+AGG + chr7_2:52543703-52543722 Msa1062040:intron 15.0%
!!! TTGAATATTGATTAGAAAAA+GGG + chr7_2:52543704-52543723 Msa1062040:intron 15.0%
!! TAATCATATTTGAGAAATAT+TGG - chr7_2:52543731-52543750 None:intergenic 15.0%
!! TTAAGGTCATTATAAAAATT+AGG - chr7_2:52543816-52543835 None:intergenic 15.0%
!!! ATTTACTTTAACAACGTTTT+TGG - chr7_2:52543209-52543228 None:intergenic 20.0%
!! ATAGACATATATAATGAACT+TGG - chr7_2:52543614-52543633 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG - chr7_2:52544413-52544432 None:intergenic 20.0%
!!! ATTTACTTTAACAACGTTTT+TGG - chr7_2:52543209-52543228 None:intergenic 20.0%
!! ATAGACATATATAATGAACT+TGG - chr7_2:52543614-52543633 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG - chr7_2:52544413-52544432 None:intergenic 20.0%
!!! TGAAATAGCTCTAAAATTGA+AGG + chr7_2:52543309-52543328 Msa1062040:CDS 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG + chr7_2:52543310-52543329 Msa1062040:CDS 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_2:52543464-52543483 Msa1062040:CDS 25.0%
! TCAAATATGATTAAGTTAGC+TGG + chr7_2:52543738-52543757 Msa1062040:intron 25.0%
! CAAATATGATTAAGTTAGCT+GGG + chr7_2:52543739-52543758 Msa1062040:intron 25.0%
! AATTTCCTAAGCTTTACAAT+TGG + chr7_2:52544072-52544091 Msa1062040:CDS 25.0%
!! TTTTATAATGATGTGCATTG+TGG + chr7_2:52544208-52544227 Msa1062040:three_prime_UTR 25.0%
! AAATTAGATATATTGAGCCT+TGG + chr7_2:52544288-52544307 Msa1062040:three_prime_UTR 25.0%
! AGGTTGTAATAAAATTTCCA+TGG + chr7_2:52544316-52544335 Msa1062040:three_prime_UTR 25.0%
! GGTTGTAATAAAATTTCCAT+GGG + chr7_2:52544317-52544336 Msa1062040:three_prime_UTR 25.0%
!! AGTCGAAAAATATTGACTAA+TGG + chr7_2:52544456-52544475 Msa1062040:three_prime_UTR 25.0%
!!! TGAAATAGCTCTAAAATTGA+AGG + chr7_2:52543309-52543328 Msa1062040:CDS 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG + chr7_2:52543310-52543329 Msa1062040:CDS 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_2:52543464-52543483 Msa1062040:CDS 25.0%
! TCAAATATGATTAAGTTAGC+TGG + chr7_2:52543738-52543757 Msa1062040:intron 25.0%
! CAAATATGATTAAGTTAGCT+GGG + chr7_2:52543739-52543758 Msa1062040:intron 25.0%
! AATTTCCTAAGCTTTACAAT+TGG + chr7_2:52544072-52544091 Msa1062040:CDS 25.0%
!! TTTTATAATGATGTGCATTG+TGG + chr7_2:52544208-52544227 Msa1062040:three_prime_UTR 25.0%
! AAATTAGATATATTGAGCCT+TGG + chr7_2:52544288-52544307 Msa1062040:three_prime_UTR 25.0%
! AGGTTGTAATAAAATTTCCA+TGG + chr7_2:52544316-52544335 Msa1062040:three_prime_UTR 25.0%
! GGTTGTAATAAAATTTCCAT+GGG + chr7_2:52544317-52544336 Msa1062040:three_prime_UTR 25.0%
!! AGTCGAAAAATATTGACTAA+TGG + chr7_2:52544456-52544475 Msa1062040:three_prime_UTR 25.0%
! AAATAGTTGAAGCACTAAGA+TGG + chr7_2:52543225-52543244 Msa1062040:exon 30.0%
ATTTCAACCCTTGTAGAAAA+TGG - chr7_2:52543295-52543314 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG + chr7_2:52543343-52543362 Msa1062040:CDS 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7_2:52543399-52543418 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_2:52543400-52543419 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG + chr7_2:52543412-52543431 Msa1062040:CDS 30.0%
TTGCCATTATGAACTAATAC+AGG - chr7_2:52543418-52543437 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG - chr7_2:52543548-52543567 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG - chr7_2:52543606-52543625 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG - chr7_2:52544028-52544047 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_2:52544118-52544137 None:intergenic 30.0%
TTATTACAACCTACAATCCA+AGG - chr7_2:52544308-52544327 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG + chr7_2:52544325-52544344 Msa1062040:three_prime_UTR 30.0%
! CTTATGGAAGTATAATGAGA+GGG + chr7_2:52544348-52544367 Msa1062040:three_prime_UTR 30.0%
! AAATATTGACTAATGGCTCT+TGG + chr7_2:52544463-52544482 Msa1062040:three_prime_UTR 30.0%
! AAATAGTTGAAGCACTAAGA+TGG + chr7_2:52543225-52543244 Msa1062040:exon 30.0%
ATTTCAACCCTTGTAGAAAA+TGG - chr7_2:52543295-52543314 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG + chr7_2:52543343-52543362 Msa1062040:CDS 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7_2:52543399-52543418 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_2:52543400-52543419 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG + chr7_2:52543412-52543431 Msa1062040:CDS 30.0%
TTGCCATTATGAACTAATAC+AGG - chr7_2:52543418-52543437 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG - chr7_2:52543548-52543567 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG - chr7_2:52543606-52543625 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG - chr7_2:52544028-52544047 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_2:52544118-52544137 None:intergenic 30.0%
TTATTACAACCTACAATCCA+AGG - chr7_2:52544308-52544327 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG + chr7_2:52544325-52544344 Msa1062040:three_prime_UTR 30.0%
! CTTATGGAAGTATAATGAGA+GGG + chr7_2:52544348-52544367 Msa1062040:three_prime_UTR 30.0%
!! GGGTGTTGAATACAAATATG+AGG + chr7_2:52543330-52543349 Msa1062040:CDS 35.0%
CAAATATGAGGAAGAAAAGC+AGG + chr7_2:52543342-52543361 Msa1062040:CDS 35.0%
AATATGAGGAAGAAAAGCAG+GGG + chr7_2:52543344-52543363 Msa1062040:CDS 35.0%
TAAGGATCAGAAGGTAAGAT+TGG - chr7_2:52543499-52543518 None:intergenic 35.0%
! GCTCTTTTATAAGGATCAGA+AGG - chr7_2:52543508-52543527 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_2:52543510-52543529 Msa1062040:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG + chr7_2:52543543-52543562 Msa1062040:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG - chr7_2:52543574-52543593 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG - chr7_2:52543833-52543852 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG + chr7_2:52543905-52543924 Msa1062040:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_2:52543935-52543954 Msa1062040:CDS 35.0%
TTTCTTGAGAATGAGCTCAA+GGG + chr7_2:52543936-52543955 Msa1062040:CDS 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG + chr7_2:52544000-52544019 Msa1062040:CDS 35.0%
! CCTGTTACTTCTTGTACAAT+AGG - chr7_2:52544029-52544048 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG + chr7_2:52544026-52544045 Msa1062040:CDS 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_2:52544115-52544134 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_2:52544119-52544138 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG + chr7_2:52544129-52544148 Msa1062040:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG - chr7_2:52544162-52544181 None:intergenic 35.0%
TATATTGAGCCTTGGATTGT+AGG + chr7_2:52544296-52544315 Msa1062040:three_prime_UTR 35.0%
! GCTTATGGAAGTATAATGAG+AGG + chr7_2:52544347-52544366 Msa1062040:three_prime_UTR 35.0%
!! GGGTGTTGAATACAAATATG+AGG + chr7_2:52543330-52543349 Msa1062040:CDS 35.0%
CAAATATGAGGAAGAAAAGC+AGG + chr7_2:52543342-52543361 Msa1062040:CDS 35.0%
AATATGAGGAAGAAAAGCAG+GGG + chr7_2:52543344-52543363 Msa1062040:CDS 35.0%
TAAGGATCAGAAGGTAAGAT+TGG - chr7_2:52543499-52543518 None:intergenic 35.0%
! GCTCTTTTATAAGGATCAGA+AGG - chr7_2:52543508-52543527 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_2:52543510-52543529 Msa1062040:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG + chr7_2:52543543-52543562 Msa1062040:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG - chr7_2:52543574-52543593 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG - chr7_2:52543833-52543852 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG + chr7_2:52543905-52543924 Msa1062040:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_2:52543935-52543954 Msa1062040:CDS 35.0%
TTTCTTGAGAATGAGCTCAA+GGG + chr7_2:52543936-52543955 Msa1062040:CDS 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG + chr7_2:52544000-52544019 Msa1062040:CDS 35.0%
! CCTGTTACTTCTTGTACAAT+AGG - chr7_2:52544029-52544048 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG + chr7_2:52544026-52544045 Msa1062040:CDS 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_2:52544115-52544134 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_2:52544119-52544138 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG + chr7_2:52544129-52544148 Msa1062040:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG - chr7_2:52544162-52544181 None:intergenic 35.0%
TATATTGAGCCTTGGATTGT+AGG + chr7_2:52544296-52544315 Msa1062040:three_prime_UTR 35.0%
! GCTTATGGAAGTATAATGAG+AGG + chr7_2:52544347-52544366 Msa1062040:three_prime_UTR 35.0%
CACTAAGATGGCATCAAATC+AGG + chr7_2:52543237-52543256 Msa1062040:exon 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG + chr7_2:52543256-52543275 Msa1062040:CDS 40.0%
! TGGGAAGTCCATTTTCTACA+AGG + chr7_2:52543284-52543303 Msa1062040:CDS 40.0%
! GGGAAGTCCATTTTCTACAA+GGG + chr7_2:52543285-52543304 Msa1062040:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG - chr7_2:52543442-52543461 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG + chr7_2:52543893-52543912 Msa1062040:CDS 40.0%
TTCTTTGGTGGAGATGAGAT+TGG + chr7_2:52543963-52543982 Msa1062040:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+AGG - chr7_2:52544080-52544099 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG - chr7_2:52544100-52544119 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG + chr7_2:52544128-52544147 Msa1062040:CDS 40.0%
CACTAAGATGGCATCAAATC+AGG + chr7_2:52543237-52543256 Msa1062040:exon 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG + chr7_2:52543256-52543275 Msa1062040:CDS 40.0%
! TGGGAAGTCCATTTTCTACA+AGG + chr7_2:52543284-52543303 Msa1062040:CDS 40.0%
! GGGAAGTCCATTTTCTACAA+GGG + chr7_2:52543285-52543304 Msa1062040:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG - chr7_2:52543442-52543461 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG + chr7_2:52543893-52543912 Msa1062040:CDS 40.0%
TTCTTTGGTGGAGATGAGAT+TGG + chr7_2:52543963-52543982 Msa1062040:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+AGG - chr7_2:52544080-52544099 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG - chr7_2:52544100-52544119 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG + chr7_2:52544128-52544147 Msa1062040:CDS 40.0%
! AGTGAAGCTTTTCGGACTTG+TGG + chr7_2:52543264-52543283 Msa1062040:CDS 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG + chr7_2:52543265-52543284 Msa1062040:CDS 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG - chr7_2:52543517-52543536 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG - chr7_2:52543587-52543606 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG - chr7_2:52543588-52543607 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG + chr7_2:52543844-52543863 Msa1062040:intron 45.0%
TCCATGCAGGAATCATACAC+TGG - chr7_2:52543848-52543867 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG - chr7_2:52543861-52543880 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG + chr7_2:52544106-52544125 Msa1062040:CDS 45.0%
TCCATGGGACTTATGGCTTA+TGG + chr7_2:52544332-52544351 Msa1062040:three_prime_UTR 45.0%
TCCATAAGCCATAAGTCCCA+TGG - chr7_2:52544336-52544355 None:intergenic 45.0%
! AGTGAAGCTTTTCGGACTTG+TGG + chr7_2:52543264-52543283 Msa1062040:CDS 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG + chr7_2:52543265-52543284 Msa1062040:CDS 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG - chr7_2:52543517-52543536 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG - chr7_2:52543587-52543606 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG - chr7_2:52543588-52543607 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG + chr7_2:52543844-52543863 Msa1062040:intron 45.0%
TCCATGCAGGAATCATACAC+TGG - chr7_2:52543848-52543867 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG - chr7_2:52543861-52543880 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG + chr7_2:52544106-52544125 Msa1062040:CDS 45.0%
TCCATGGGACTTATGGCTTA+TGG + chr7_2:52544332-52544351 Msa1062040:three_prime_UTR 45.0%
TCCATAAGCCATAAGTCCCA+TGG - chr7_2:52544336-52544355 None:intergenic 45.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7_2:52543521-52543540 Msa1062040:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG + chr7_2:52543948-52543967 Msa1062040:CDS 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG + chr7_2:52543951-52543970 Msa1062040:CDS 50.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7_2:52543521-52543540 Msa1062040:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG + chr7_2:52543948-52543967 Msa1062040:CDS 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG + chr7_2:52543951-52543970 Msa1062040:CDS 50.0%
CTTGGACCAGAAACGAGCCA+AGG - chr7_2:52543530-52543549 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG + chr7_2:52544136-52544155 Msa1062040:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG - chr7_2:52544140-52544159 None:intergenic 55.0%
CTTGGACCAGAAACGAGCCA+AGG - chr7_2:52543530-52543549 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG + chr7_2:52544136-52544155 Msa1062040:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG - chr7_2:52544140-52544159 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 52543168 52544485 52543168 ID=Msa1062040;Name=Msa1062040
chr7_2 mRNA 52543168 52544485 52543168 ID=Msa1062040-mRNA-1;Parent=Msa1062040;Name=Msa1062040-mRNA-1;_AED=0.37;_eAED=0.37;_QI=76|1|1|1|1|1|2|283|224
chr7_2 exon 52543168 52543564 52543168 ID=Msa1062040-mRNA-1:exon:9488;Parent=Msa1062040-mRNA-1
chr7_2 exon 52543849 52544485 52543849 ID=Msa1062040-mRNA-1:exon:9489;Parent=Msa1062040-mRNA-1
chr7_2 five_prime_UTR 52543168 52543243 52543168 ID=Msa1062040-mRNA-1:five_prime_utr;Parent=Msa1062040-mRNA-1
chr7_2 CDS 52543244 52543564 52543244 ID=Msa1062040-mRNA-1:cds;Parent=Msa1062040-mRNA-1
chr7_2 CDS 52543849 52544202 52543849 ID=Msa1062040-mRNA-1:cds;Parent=Msa1062040-mRNA-1
chr7_2 three_prime_UTR 52544203 52544485 52544203 ID=Msa1062040-mRNA-1:three_prime_utr;Parent=Msa1062040-mRNA-1
Gene Sequence

>Msa1062040

ATGGCATCAAATCAGGAAGAAGTGAAGCTTTTCGGACTTGTGGGAAGTCCATTTTCTACAAGGGTTGAAATAGCTCTAAAATTGAAGGGTGTTGAATACAAATATGAGGAAGAAAAGCAGGGGAACTTGAGTGATACAGTCATTAAATACAACCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGGCAAGCCTATAGCAGAGTCACTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAATCCAATCTTACCTTCTGATCCTTATAAAAGAGCCTTGGCTCGTTTCTGGTCCAAGTTCATAGATGATAAGTGTATGATTCCTGCATGGAAAACTGCTTTCACTCTTGATGAGAAAGAACGTGAGAAGAGTTTTGAGGAAACAAAAGAGGCTTTTCAATTTCTTGAGAATGAGCTCAAGGGCAAGTTCTTTGGTGGAGATGAGATTGGACTTATTGACATTACTGCTGTCTTTATAGCTTTTTGGTTCCCTATTGTACAAGAAGTAACAGGACTCAAGTTATTCACAAGTGAGAAATTTCCTAAGCTTTACAATTGGAGCCAAGAATTCAACAACCACCCAATTGTCAAGGAAAATTTGCCTCGTAGAGAAGGGCTTTTGGCCTTCTTCAAAGCTCGTTATGAAAGTCTTGTTGCTTCAAAATAG

Protein sequence

>Msa1062040

MASNQEEVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPIAESLVILEYIDETWKQNPILPSDPYKRALARFWSKFIDDKCMIPAWKTAFTLDEKEREKSFEETKEAFQFLENELKGKFFGGDEIGLIDITAVFIAFWFPIVQEVTGLKLFTSEKFPKLYNWSQEFNNHPIVKENLPRREGLLAFFKARYESLVASK*