AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107200 MtrunA17_Chr7g0240561 95.089 224 11 0 1 224 1 224 4.14e-157 434
Msa1107200 MtrunA17_Chr7g0240581 80.357 224 44 0 1 224 1 224 2.98e-133 374
Msa1107200 MtrunA17_Chr7g0240551 80.804 224 43 0 1 224 1 224 3.87e-130 365
Msa1107200 MtrunA17_Chr7g0240531 78.125 224 49 0 1 224 1 224 2.90e-124 351
Msa1107200 MtrunA17_Chr7g0240541 76.786 224 52 0 1 224 1 224 6.37e-124 350
Msa1107200 MtrunA17_Chr7g0240511 78.571 224 43 1 1 224 1 219 9.45e-124 349
Msa1107200 MtrunA17_Chr7g0240521 78.667 225 47 1 1 224 8 232 7.61e-116 330
Msa1107200 MtrunA17_Chr7g0240631 69.058 223 69 0 1 223 1 223 1.50e-115 329
Msa1107200 MtrunA17_Chr7g0240641 68.610 223 70 0 1 223 1 223 1.18e-113 324
Msa1107200 MtrunA17_Chr7g0240681 68.889 225 69 1 1 224 1 225 2.43e-112 320
Msa1107200 MtrunA17_Chr7g0240611 69.507 223 64 1 1 223 1 219 5.20e-112 320
Msa1107200 MtrunA17_Chr4g0008791 63.229 223 82 0 1 223 1 223 1.20e-104 301
Msa1107200 MtrunA17_Chr7g0240691 63.927 219 78 1 6 223 36 254 3.77e-103 298
Msa1107200 MtrunA17_Chr7g0240671 66.184 207 66 1 8 214 5 207 5.51e-97 281
Msa1107200 MtrunA17_Chr7g0240651 66.667 222 70 1 1 222 1 218 1.47e-96 280
Msa1107200 MtrunA17_Chr4g0008781 63.256 215 77 2 2 215 3 216 2.08e-96 280
Msa1107200 MtrunA17_Chr7g0240661 66.822 214 67 1 1 214 1 210 4.59e-93 272
Msa1107200 MtrunA17_Chr6g0483141 48.077 208 106 2 7 213 3 209 9.04e-66 202
Msa1107200 MtrunA17_Chr3g0132581 47.273 220 114 2 5 223 3 221 3.55e-64 198
Msa1107200 MtrunA17_Chr1g0196771 47.907 215 107 3 5 216 1 213 3.69e-64 198
Msa1107200 MtrunA17_Chr8g0379561 47.926 217 110 3 1 216 1 215 3.56e-63 196
Msa1107200 MtrunA17_Chr8g0379581 45.622 217 116 2 4 219 2 217 1.87e-61 191
Msa1107200 MtrunA17_Chr1g0212301 46.047 215 109 3 7 216 3 215 2.67e-60 188
Msa1107200 MtrunA17_Chr5g0417011 42.793 222 119 3 1 215 1 221 1.17e-56 179
Msa1107200 MtrunA17_Chr4g0029341 42.056 214 118 3 6 215 3 214 5.67e-56 177
Msa1107200 MtrunA17_Chr1g0196691 42.534 221 122 3 7 223 28 247 1.34e-55 177
Msa1107200 MtrunA17_Chr1g0196661 42.857 224 118 5 7 224 3 222 7.97e-55 174
Msa1107200 MtrunA17_Chr1g0196721 41.818 220 122 3 8 223 3 220 7.94e-53 169
Msa1107200 MtrunA17_Chr1g0196711 42.381 210 115 3 7 212 3 210 3.99e-52 168
Msa1107200 MtrunA17_Chr8g0363751 43.836 219 115 5 5 215 3 221 4.19e-50 163
Msa1107200 MtrunA17_Chr5g0415411 42.273 220 117 4 1 212 1 218 3.89e-49 160
Msa1107200 MtrunA17_Chr2g0312751 37.619 210 126 4 6 213 3 209 5.01e-44 147
Msa1107200 MtrunA17_Chr2g0312771 37.619 210 126 4 6 213 3 209 1.41e-43 145
Msa1107200 MtrunA17_Chr3g0107731 42.211 199 110 5 16 212 18 213 2.74e-42 142
Msa1107200 MtrunA17_Chr2g0312791 38.863 211 124 4 6 213 3 211 3.31e-42 142
Msa1107200 MtrunA17_Chr2g0312731 38.350 206 122 4 6 209 3 205 3.37e-42 142
Msa1107200 MtrunA17_Chr2g0312781 36.842 209 127 4 1 207 15 220 2.54e-41 140
Msa1107200 MtrunA17_Chr4g0069471 46.067 178 92 4 3 177 21 197 2.84e-41 139
Msa1107200 MtrunA17_Chr2g0312721 39.906 213 117 7 6 213 3 209 1.73e-40 138
Msa1107200 MtrunA17_Chr2g0312811 38.679 212 123 5 6 213 3 211 4.05e-40 137
Msa1107200 MtrunA17_Chr3g0107741 38.863 211 124 5 4 212 6 213 4.89e-40 137
Msa1107200 MtrunA17_Chr8g0391631 49.677 155 70 5 7 153 21 175 2.85e-39 133
Msa1107200 MtrunA17_Chr8g0357211 37.900 219 126 6 6 218 3 217 1.50e-38 133
Msa1107200 MtrunA17_Chr8g0357241 37.900 219 126 6 6 218 3 217 2.15e-38 132
Msa1107200 MtrunA17_Chr2g0312681 37.500 208 125 4 7 212 4 208 1.03e-37 130
Msa1107200 MtrunA17_Chr2g0312691 37.981 208 124 4 7 212 4 208 6.98e-37 128
Msa1107200 MtrunA17_Chr5g0433801 36.321 212 130 4 3 212 2 210 1.32e-35 125
Msa1107200 MtrunA17_Chr2g0312711 39.500 200 115 5 7 204 4 199 1.91e-32 117
Msa1107200 MtrunA17_Chr2g0313561 45.714 70 36 2 51 119 2 70 3.58e-16 70.9
Msa1107200 MtrunA17_Chr4g0076681 30.000 230 129 9 1 207 1 221 9.63e-13 65.1
Msa1107200 MtrunA17_Chr1g0181861 26.667 225 131 8 8 217 28 233 1.11e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107200 AT3G09270.1 55.000 220 94 5 4 219 2 220 1.97e-75 227
Msa1107200 AT2G29420.1 49.309 217 108 2 3 218 5 220 4.05e-74 224
Msa1107200 AT2G29450.1 49.758 207 102 2 3 207 2 208 1.99e-60 189
Msa1107200 AT2G29490.1 48.325 209 105 3 1 207 1 208 4.81e-60 188
Msa1107200 AT2G29480.1 47.368 209 107 3 1 207 1 208 5.68e-58 183
Msa1107200 AT2G29460.1 47.847 209 106 3 1 207 1 208 2.66e-57 181
Msa1107200 AT2G29470.1 46.190 210 109 4 1 207 1 209 1.96e-56 179
Msa1107200 AT2G29440.1 46.411 209 108 4 1 207 1 207 1.47e-55 177
Msa1107200 AT1G69930.1 38.938 226 132 3 2 221 7 232 8.34e-50 162
Msa1107200 AT1G59700.1 44.037 218 114 4 5 214 4 221 2.16e-48 159
Msa1107200 AT1G10370.1 40.175 229 128 4 1 222 1 227 4.39e-48 158
Msa1107200 AT1G59670.1 42.202 218 118 4 5 214 4 221 3.24e-47 155
Msa1107200 AT1G74590.1 39.545 220 126 3 1 214 1 219 5.47e-47 155
Msa1107200 AT1G78320.1 40.865 208 118 4 5 210 2 206 7.35e-47 154
Msa1107200 AT5G62480.1 39.819 221 122 4 5 215 6 225 2.53e-46 154
Msa1107200 AT1G78340.1 42.105 209 116 4 6 212 3 208 1.21e-45 151
Msa1107200 AT1G27130.1 36.889 225 133 4 1 217 1 224 3.21e-45 150
Msa1107200 AT1G78370.1 40.201 199 114 4 16 212 13 208 1.13e-43 146
Msa1107200 AT1G10360.1 37.037 216 129 3 6 214 4 219 1.36e-43 146
Msa1107200 AT1G78380.1 39.904 208 120 4 7 212 4 208 1.81e-43 145
Msa1107200 AT1G17170.1 38.967 213 124 5 6 216 3 211 4.40e-43 145
Msa1107200 AT1G27140.1 36.564 227 134 4 1 218 1 226 4.80e-43 145
Msa1107200 AT1G69920.1 37.118 229 130 5 1 217 26 252 2.94e-42 144
Msa1107200 AT1G17190.1 42.487 193 104 5 1 191 1 188 3.03e-41 140
Msa1107200 AT1G78360.1 40.191 209 119 5 7 212 4 209 1.01e-39 136
Msa1107200 AT1G17180.1 37.799 209 125 4 6 212 3 208 1.67e-39 135
Msa1107200 AT3G43800.1 37.198 207 121 6 4 204 2 205 1.60e-38 133
Msa1107200 AT1G53680.1 36.667 210 128 4 1 207 1 208 1.09e-37 131
Msa1107200 AT1G78320.2 32.850 207 109 4 5 210 2 179 1.13e-28 107
Msa1107200 AT5G62480.3 31.364 220 115 4 5 215 6 198 1.03e-27 105
Msa1107200 AT5G62480.2 31.364 220 116 4 5 215 6 199 1.18e-27 105
Msa1107200 AT2G02380.1 28.704 216 133 7 5 207 9 216 3.36e-14 69.3
Msa1107200 AT2G02390.3 28.444 225 133 7 3 207 4 220 5.16e-13 66.2
Msa1107200 AT2G02390.1 28.899 218 134 6 3 207 4 213 6.47e-13 65.9

Find 51 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCTCGTTTC+TGG 0.160272 7_3:+48688993 Msa1107200:CDS
TAAAATTTCCATGGGACTTA+TGG 0.202862 7_3:+48689698 Msa1107200:three_prime_UTR
ATTTCAACCCTTGTAGAAAA+TGG 0.235130 7_3:-48688764 None:intergenic
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7_3:-48688869 None:intergenic
CCTGTTACTTCTTGTACAAT+AGG 0.286054 7_3:-48689399 None:intergenic
TTGGGTGGTTGTTGAATTCT+TGG 0.290435 7_3:-48689470 None:intergenic
GAGCTCAAGGGCAAGTTCTT+TGG 0.302605 7_3:+48689321 Msa1107200:CDS
TCCATGGGACTTATGGCTTA+TGG 0.305487 7_3:+48689705 Msa1107200:three_prime_UTR
GCCTCGTAGAGAAGGGCTTT+TGG 0.332731 7_3:+48689509 Msa1107200:CDS
TATATTGAGCCTTGGATTGT+AGG 0.355348 7_3:+48689669 Msa1107200:three_prime_UTR
AATTAGCATAGAAGTATATT+CGG 0.378495 7_3:-48689783 None:intergenic
TAAGGATCAGAAGGCAAGAT+TGG 0.379369 7_3:-48688968 None:intergenic
GTTCCTGTATTAGTTCATAA+TGG 0.400419 7_3:+48688884 Msa1107200:CDS
CACTAAGATGGCATCAAATC+AGG 0.403482 7_3:+48688709 Msa1107200:exon
TTCTTTGGTGGAGATGAGAT+TGG 0.406091 7_3:+48689336 Msa1107200:CDS
CCTATTGTACAAGAAGTAAC+AGG 0.429315 7_3:+48689399 Msa1107200:CDS
GTCCAAGTTCATAGATGATA+AGG 0.434027 7_3:+48689015 Msa1107200:CDS
CTGTTACTTCTTGTACAATA+GGG 0.437463 7_3:-48689398 None:intergenic
TGGCTCCAATTGTAAAGCTT+AGG 0.444725 7_3:-48689450 None:intergenic
AATTTCCTAAGCTTTACAAT+TGG 0.445365 7_3:+48689445 Msa1107200:CDS
TGAAATAGCTCTAAAATTGA+AGG 0.446842 7_3:+48688781 Msa1107200:CDS
CAAATATGAGGAAGAAAAGC+AGG 0.457444 7_3:+48688814 Msa1107200:CDS
TACCTTATCATCTATGAACT+TGG 0.459673 7_3:-48689017 None:intergenic
AAATATTGACTAATGGCTCT+TGG 0.474043 7_3:+48689836 Msa1107200:three_prime_UTR
GAAAATTTGCCTCGTAGAGA+AGG 0.475442 7_3:+48689501 Msa1107200:CDS
AAATTAGATATATTGAGCCT+TGG 0.491800 7_3:+48689661 Msa1107200:three_prime_UTR
TTGCCATTATGAACTAATAC+AGG 0.495358 7_3:-48688887 None:intergenic
ATCACAAGTGACTCTGCTAT+AGG 0.496284 7_3:-48688911 None:intergenic
CTCAAGGGCAAGTTCTTTGG+TGG 0.497594 7_3:+48689324 Msa1107200:CDS
TTGAATATATTGATGAGACT+TGG 0.500568 7_3:+48688936 Msa1107200:CDS
AGGTTGTAATAAAATTTCCA+TGG 0.510142 7_3:+48689689 Msa1107200:three_prime_UTR
TTCATAACGAGCTTTGAAGA+AGG 0.517849 7_3:-48689532 None:intergenic
GGGTGTTGAATACAAATATG+AGG 0.518356 7_3:+48688802 Msa1107200:CDS
AAATAGTTGAAGCACTAAGA+TGG 0.527927 7_3:+48688697 Msa1107200:exon
TTATTACAACCTACAATCCA+AGG 0.531133 7_3:-48689678 None:intergenic
TGATCCTTATAAAAGAGCCT+TGG 0.539754 7_3:+48688982 Msa1107200:CDS
AAAATTTGCCTCGTAGAGAA+GGG 0.551755 7_3:+48689502 Msa1107200:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.554660 7_3:+48689308 Msa1107200:CDS
CAGGAACTTTCTTATAAACA+GGG 0.564477 7_3:-48688868 None:intergenic
TCCATAAGCCATAAGTCCCA+TGG 0.566196 7_3:-48689706 None:intergenic
GGTTGTAATAAAATTTCCAT+GGG 0.566256 7_3:+48689690 Msa1107200:three_prime_UTR
GAAATAGCTCTAAAATTGAA+GGG 0.600047 7_3:+48688782 Msa1107200:CDS
CAACAACCACCCAATTGTCA+AGG 0.606941 7_3:+48689479 Msa1107200:CDS
TTTCTTGAGAATGAGCTCAA+GGG 0.611348 7_3:+48689309 Msa1107200:CDS
AAATATGAGGAAGAAAAGCA+GGG 0.615123 7_3:+48688815 Msa1107200:CDS
CTTATGGAAGTATAATGAGA+GGG 0.634339 7_3:+48689721 Msa1107200:three_prime_UTR
GCTTATGGAAGTATAATGAG+AGG 0.638265 7_3:+48689720 Msa1107200:three_prime_UTR
GCCAAAAGCCCTTCTCTACG+AGG 0.649932 7_3:-48689510 None:intergenic
ACCAGTGTATGATTCCTGCA+TGG 0.670185 7_3:+48689217 Msa1107200:intron
CTTGGACCAGAAACGAGCCA+AGG 0.694386 7_3:-48688999 None:intergenic
AATATGAGGAAGAAAAGCAG+GGG 0.696106 7_3:+48688816 Msa1107200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATAATGAACT+TGG - chr7_3:48689086-48689105 None:intergenic 10.0%
!! ATATATATATATAATGAACT+TGG - chr7_3:48689086-48689105 None:intergenic 10.0%
!! TTAAGGTCATTATAAAAATT+AGG - chr7_3:48689189-48689208 None:intergenic 15.0%
!! TTAAGGTCATTATAAAAATT+AGG - chr7_3:48689189-48689208 None:intergenic 15.0%
!!! ATTTACTTTAACAACGTTTT+TGG - chr7_3:48688681-48688700 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG - chr7_3:48689786-48689805 None:intergenic 20.0%
!!! ATTTACTTTAACAACGTTTT+TGG - chr7_3:48688681-48688700 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG - chr7_3:48689786-48689805 None:intergenic 20.0%
!!! TGAAATAGCTCTAAAATTGA+AGG + chr7_3:48688781-48688800 Msa1107200:CDS 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG + chr7_3:48688782-48688801 Msa1107200:CDS 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_3:48688936-48688955 Msa1107200:CDS 25.0%
! AATTTCCTAAGCTTTACAAT+TGG + chr7_3:48689445-48689464 Msa1107200:CDS 25.0%
!!! TTAATCTATTTTGAAGCAAC+AGG - chr7_3:48689561-48689580 None:intergenic 25.0%
!! TTTTATAATGATGTGCATTG+TGG + chr7_3:48689581-48689600 Msa1107200:three_prime_UTR 25.0%
! AAATTAGATATATTGAGCCT+TGG + chr7_3:48689661-48689680 Msa1107200:three_prime_UTR 25.0%
! AGGTTGTAATAAAATTTCCA+TGG + chr7_3:48689689-48689708 Msa1107200:three_prime_UTR 25.0%
! GGTTGTAATAAAATTTCCAT+GGG + chr7_3:48689690-48689709 Msa1107200:three_prime_UTR 25.0%
!! AGTCGAAAAATATTGACTAA+TGG + chr7_3:48689829-48689848 Msa1107200:three_prime_UTR 25.0%
!!! TGAAATAGCTCTAAAATTGA+AGG + chr7_3:48688781-48688800 Msa1107200:CDS 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG + chr7_3:48688782-48688801 Msa1107200:CDS 25.0%
! TTGAATATATTGATGAGACT+TGG + chr7_3:48688936-48688955 Msa1107200:CDS 25.0%
! AATTTCCTAAGCTTTACAAT+TGG + chr7_3:48689445-48689464 Msa1107200:CDS 25.0%
!!! TTAATCTATTTTGAAGCAAC+AGG - chr7_3:48689561-48689580 None:intergenic 25.0%
!! TTTTATAATGATGTGCATTG+TGG + chr7_3:48689581-48689600 Msa1107200:three_prime_UTR 25.0%
! AAATTAGATATATTGAGCCT+TGG + chr7_3:48689661-48689680 Msa1107200:three_prime_UTR 25.0%
! AGGTTGTAATAAAATTTCCA+TGG + chr7_3:48689689-48689708 Msa1107200:three_prime_UTR 25.0%
! GGTTGTAATAAAATTTCCAT+GGG + chr7_3:48689690-48689709 Msa1107200:three_prime_UTR 25.0%
!! AGTCGAAAAATATTGACTAA+TGG + chr7_3:48689829-48689848 Msa1107200:three_prime_UTR 25.0%
! AAATAGTTGAAGCACTAAGA+TGG + chr7_3:48688697-48688716 Msa1107200:exon 30.0%
ATTTCAACCCTTGTAGAAAA+TGG - chr7_3:48688767-48688786 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG + chr7_3:48688815-48688834 Msa1107200:CDS 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7_3:48688871-48688890 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_3:48688872-48688891 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG + chr7_3:48688884-48688903 Msa1107200:CDS 30.0%
TTGCCATTATGAACTAATAC+AGG - chr7_3:48688890-48688909 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG - chr7_3:48689020-48689039 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG - chr7_3:48689078-48689097 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG - chr7_3:48689401-48689420 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_3:48689491-48689510 None:intergenic 30.0%
TTATTACAACCTACAATCCA+AGG - chr7_3:48689681-48689700 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG + chr7_3:48689698-48689717 Msa1107200:three_prime_UTR 30.0%
! CTTATGGAAGTATAATGAGA+GGG + chr7_3:48689721-48689740 Msa1107200:three_prime_UTR 30.0%
! AAATATTGACTAATGGCTCT+TGG + chr7_3:48689836-48689855 Msa1107200:three_prime_UTR 30.0%
! AAATAGTTGAAGCACTAAGA+TGG + chr7_3:48688697-48688716 Msa1107200:exon 30.0%
ATTTCAACCCTTGTAGAAAA+TGG - chr7_3:48688767-48688786 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG + chr7_3:48688815-48688834 Msa1107200:CDS 30.0%
CAGGAACTTTCTTATAAACA+GGG - chr7_3:48688871-48688890 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_3:48688872-48688891 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG + chr7_3:48688884-48688903 Msa1107200:CDS 30.0%
TTGCCATTATGAACTAATAC+AGG - chr7_3:48688890-48688909 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG - chr7_3:48689020-48689039 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG - chr7_3:48689078-48689097 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG - chr7_3:48689401-48689420 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_3:48689491-48689510 None:intergenic 30.0%
TTATTACAACCTACAATCCA+AGG - chr7_3:48689681-48689700 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG + chr7_3:48689698-48689717 Msa1107200:three_prime_UTR 30.0%
! CTTATGGAAGTATAATGAGA+GGG + chr7_3:48689721-48689740 Msa1107200:three_prime_UTR 30.0%
!! GGGTGTTGAATACAAATATG+AGG + chr7_3:48688802-48688821 Msa1107200:CDS 35.0%
CAAATATGAGGAAGAAAAGC+AGG + chr7_3:48688814-48688833 Msa1107200:CDS 35.0%
AATATGAGGAAGAAAAGCAG+GGG + chr7_3:48688816-48688835 Msa1107200:CDS 35.0%
! GCTCTTTTATAAGGATCAGA+AGG - chr7_3:48688980-48688999 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_3:48688982-48689001 Msa1107200:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG + chr7_3:48689015-48689034 Msa1107200:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG - chr7_3:48689046-48689065 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG - chr7_3:48689206-48689225 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG + chr7_3:48689278-48689297 Msa1107200:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_3:48689308-48689327 Msa1107200:CDS 35.0%
TTTCTTGAGAATGAGCTCAA+GGG + chr7_3:48689309-48689328 Msa1107200:CDS 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG + chr7_3:48689373-48689392 Msa1107200:CDS 35.0%
! CCTGTTACTTCTTGTACAAT+AGG - chr7_3:48689402-48689421 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG + chr7_3:48689399-48689418 Msa1107200:CDS 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_3:48689488-48689507 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_3:48689492-48689511 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG + chr7_3:48689502-48689521 Msa1107200:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG - chr7_3:48689535-48689554 None:intergenic 35.0%
TATATTGAGCCTTGGATTGT+AGG + chr7_3:48689669-48689688 Msa1107200:three_prime_UTR 35.0%
! GCTTATGGAAGTATAATGAG+AGG + chr7_3:48689720-48689739 Msa1107200:three_prime_UTR 35.0%
!! GGGTGTTGAATACAAATATG+AGG + chr7_3:48688802-48688821 Msa1107200:CDS 35.0%
CAAATATGAGGAAGAAAAGC+AGG + chr7_3:48688814-48688833 Msa1107200:CDS 35.0%
AATATGAGGAAGAAAAGCAG+GGG + chr7_3:48688816-48688835 Msa1107200:CDS 35.0%
! GCTCTTTTATAAGGATCAGA+AGG - chr7_3:48688980-48688999 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG + chr7_3:48688982-48689001 Msa1107200:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG + chr7_3:48689015-48689034 Msa1107200:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG - chr7_3:48689046-48689065 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG - chr7_3:48689206-48689225 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG + chr7_3:48689278-48689297 Msa1107200:CDS 35.0%
ATTTCTTGAGAATGAGCTCA+AGG + chr7_3:48689308-48689327 Msa1107200:CDS 35.0%
TTTCTTGAGAATGAGCTCAA+GGG + chr7_3:48689309-48689328 Msa1107200:CDS 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG + chr7_3:48689373-48689392 Msa1107200:CDS 35.0%
! CCTGTTACTTCTTGTACAAT+AGG - chr7_3:48689402-48689421 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG + chr7_3:48689399-48689418 Msa1107200:CDS 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_3:48689488-48689507 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_3:48689492-48689511 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG + chr7_3:48689502-48689521 Msa1107200:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG - chr7_3:48689535-48689554 None:intergenic 35.0%
TATATTGAGCCTTGGATTGT+AGG + chr7_3:48689669-48689688 Msa1107200:three_prime_UTR 35.0%
! GCTTATGGAAGTATAATGAG+AGG + chr7_3:48689720-48689739 Msa1107200:three_prime_UTR 35.0%
CACTAAGATGGCATCAAATC+AGG + chr7_3:48688709-48688728 Msa1107200:exon 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG + chr7_3:48688728-48688747 Msa1107200:CDS 40.0%
! TGGGAAGTCCATTTTCTACA+AGG + chr7_3:48688756-48688775 Msa1107200:CDS 40.0%
! GGGAAGTCCATTTTCTACAA+GGG + chr7_3:48688757-48688776 Msa1107200:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG - chr7_3:48688914-48688933 None:intergenic 40.0%
TAAGGATCAGAAGGCAAGAT+TGG - chr7_3:48688971-48688990 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG + chr7_3:48689266-48689285 Msa1107200:CDS 40.0%
TTCTTTGGTGGAGATGAGAT+TGG + chr7_3:48689336-48689355 Msa1107200:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+AGG - chr7_3:48689453-48689472 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG - chr7_3:48689473-48689492 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG + chr7_3:48689501-48689520 Msa1107200:CDS 40.0%
CACTAAGATGGCATCAAATC+AGG + chr7_3:48688709-48688728 Msa1107200:exon 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG + chr7_3:48688728-48688747 Msa1107200:CDS 40.0%
! TGGGAAGTCCATTTTCTACA+AGG + chr7_3:48688756-48688775 Msa1107200:CDS 40.0%
! GGGAAGTCCATTTTCTACAA+GGG + chr7_3:48688757-48688776 Msa1107200:CDS 40.0%
ATCACAAGTGACTCTGCTAT+AGG - chr7_3:48688914-48688933 None:intergenic 40.0%
TAAGGATCAGAAGGCAAGAT+TGG - chr7_3:48688971-48688990 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG + chr7_3:48689266-48689285 Msa1107200:CDS 40.0%
TTCTTTGGTGGAGATGAGAT+TGG + chr7_3:48689336-48689355 Msa1107200:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+AGG - chr7_3:48689453-48689472 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG - chr7_3:48689473-48689492 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG + chr7_3:48689501-48689520 Msa1107200:CDS 40.0%
! AGTGAAGCTTTTCGGACTTG+TGG + chr7_3:48688736-48688755 Msa1107200:CDS 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG + chr7_3:48688737-48688756 Msa1107200:CDS 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG - chr7_3:48688989-48689008 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG - chr7_3:48689059-48689078 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG - chr7_3:48689060-48689079 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG + chr7_3:48689217-48689236 Msa1107200:intron 45.0%
TCCATGCAGGAATCATACAC+TGG - chr7_3:48689221-48689240 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG - chr7_3:48689234-48689253 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG + chr7_3:48689479-48689498 Msa1107200:CDS 45.0%
TCCATGGGACTTATGGCTTA+TGG + chr7_3:48689705-48689724 Msa1107200:three_prime_UTR 45.0%
TCCATAAGCCATAAGTCCCA+TGG - chr7_3:48689709-48689728 None:intergenic 45.0%
! AGTGAAGCTTTTCGGACTTG+TGG + chr7_3:48688736-48688755 Msa1107200:CDS 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG + chr7_3:48688737-48688756 Msa1107200:CDS 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG - chr7_3:48688989-48689008 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG - chr7_3:48689059-48689078 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG - chr7_3:48689060-48689079 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG + chr7_3:48689217-48689236 Msa1107200:intron 45.0%
TCCATGCAGGAATCATACAC+TGG - chr7_3:48689221-48689240 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG - chr7_3:48689234-48689253 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG + chr7_3:48689479-48689498 Msa1107200:CDS 45.0%
TCCATGGGACTTATGGCTTA+TGG + chr7_3:48689705-48689724 Msa1107200:three_prime_UTR 45.0%
TCCATAAGCCATAAGTCCCA+TGG - chr7_3:48689709-48689728 None:intergenic 45.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7_3:48688993-48689012 Msa1107200:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG + chr7_3:48689321-48689340 Msa1107200:CDS 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG + chr7_3:48689324-48689343 Msa1107200:CDS 50.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7_3:48688993-48689012 Msa1107200:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG + chr7_3:48689321-48689340 Msa1107200:CDS 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG + chr7_3:48689324-48689343 Msa1107200:CDS 50.0%
CTTGGACCAGAAACGAGCCA+AGG - chr7_3:48689002-48689021 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG + chr7_3:48689509-48689528 Msa1107200:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG - chr7_3:48689513-48689532 None:intergenic 55.0%
CTTGGACCAGAAACGAGCCA+AGG - chr7_3:48689002-48689021 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG + chr7_3:48689509-48689528 Msa1107200:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG - chr7_3:48689513-48689532 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 48688676 48689858 48688676 ID=Msa1107200;Name=Msa1107200
chr7_3 mRNA 48688676 48689858 48688676 ID=Msa1107200-mRNA-1;Parent=Msa1107200;Name=Msa1107200-mRNA-1;_AED=0.26;_eAED=0.26;_QI=40|1|1|1|1|1|2|283|224
chr7_3 exon 48688676 48689036 48688676 ID=Msa1107200-mRNA-1:exon:9909;Parent=Msa1107200-mRNA-1
chr7_3 exon 48689222 48689858 48689222 ID=Msa1107200-mRNA-1:exon:9910;Parent=Msa1107200-mRNA-1
chr7_3 five_prime_UTR 48688676 48688715 48688676 ID=Msa1107200-mRNA-1:five_prime_utr;Parent=Msa1107200-mRNA-1
chr7_3 CDS 48688716 48689036 48688716 ID=Msa1107200-mRNA-1:cds;Parent=Msa1107200-mRNA-1
chr7_3 CDS 48689222 48689575 48689222 ID=Msa1107200-mRNA-1:cds;Parent=Msa1107200-mRNA-1
chr7_3 three_prime_UTR 48689576 48689858 48689576 ID=Msa1107200-mRNA-1:three_prime_utr;Parent=Msa1107200-mRNA-1
Gene Sequence

>Msa1107200

ATGGCATCAAATCAGGAAGAAGTGAAGCTTTTCGGACTTGTGGGAAGTCCATTTTCTACAAGGGTTGAAATAGCTCTAAAATTGAAGGGTGTTGAATACAAATATGAGGAAGAAAAGCAGGGGAACTTGAGTGATACAGTCATTAAATACAACCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGGCAAGCCTATAGCAGAGTCACTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAATCCAATCTTGCCTTCTGATCCTTATAAAAGAGCCTTGGCTCGTTTCTGGTCCAAGTTCATAGATGATAAGTGTATGATTCCTGCATGGAAAACTGCTTTCACTCTTGATGAGAAAGAACGTGAGAAGAGTTTTGAGGAAACAAAAGAGGCTTTTCAATTTCTTGAGAATGAGCTCAAGGGCAAGTTCTTTGGTGGAGATGAGATTGGACTTATTGACATTACTGCTGTCTTTATAGCTTTTTGGTTCCCTATTGTACAAGAAGTAACAGGACTCAAGTTATTCACAAGTGAGAAATTTCCTAAGCTTTACAATTGGAGCCAAGAATTCAACAACCACCCAATTGTCAAGGAAAATTTGCCTCGTAGAGAAGGGCTTTTGGCCTTCTTCAAAGCTCGTTATGAAAGTCCTGTTGCTTCAAAATAG

Protein sequence

>Msa1107200

MASNQEEVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPIAESLVILEYIDETWKQNPILPSDPYKRALARFWSKFIDDKCMIPAWKTAFTLDEKEREKSFEETKEAFQFLENELKGKFFGGDEIGLIDITAVFIAFWFPIVQEVTGLKLFTSEKFPKLYNWSQEFNNHPIVKENLPRREGLLAFFKARYESPVASK*