AlfalfaGEDB | Msa0921570

M. sativa cultivar zhongmu-4 / Msa0921570

KEGG: -
GO: GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921570	XP_003619827.1	94.915	177	9	0	1	177	1	177	7.10e-123	353

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921570	sp\|Q9LVH4\|CAR4_ARATH	65.537	177	61	0	1	177	1	177	7.92e-84	248

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0773310	Msa0921570	0.800819	1.205099e-48	-8.615850e-47
Msa0810760	Msa0921570	0.807591	4.690209e-50	-8.615850e-47
Msa0921570	Msa0994740	0.951464	1.931969e-109	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921570	MtrunA17_Chr6g0478401	94.915	177	9	0	1	177	1	177	6.53e-127	353
Msa0921570	MtrunA17_Chr8g0393081	72.353	170	47	0	8	177	12	181	9.21e-93	267
Msa0921570	MtrunA17_Chr3g0111361	66.871	163	54	0	13	175	1	163	1.08e-81	239
Msa0921570	MtrunA17_Chr2g0280981	64.417	163	58	0	15	177	2	164	1.56e-77	228
Msa0921570	MtrunA17_Chr1g0160811	56.098	164	71	1	15	177	4	167	8.09e-66	199
Msa0921570	MtrunA17_Chr4g0043861	49.390	164	83	0	13	176	1	164	1.17e-56	176
Msa0921570	MtrunA17_Chr8g0380381	43.750	160	89	1	13	171	85	244	2.81e-43	144
Msa0921570	MtrunA17_Chr2g0292461	41.765	170	98	1	3	171	158	327	7.99e-40	137
Msa0921570	MtrunA17_Chr8g0352751	40.625	160	94	1	13	171	1	160	2.52e-35	121
Msa0921570	MtrunA17_Chr2g0290631	38.217	157	95	2	13	167	1	157	7.64e-35	120
Msa0921570	MtrunA17_Chr3g0083541	38.125	160	98	1	13	171	239	398	1.44e-30	114
Msa0921570	MtrunA17_Chr1g0156811	40.449	89	48	3	13	96	255	343	5.59e-13	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0921570	AT3G17980.1	65.537	177	61	0	1	177	1	177	8.05e-85	248
Msa0921570	AT1G73580.1	68.862	167	52	0	11	177	2	168	3.52e-81	238
Msa0921570	AT1G48590.4	66.272	169	56	1	9	177	2	169	3.92e-80	235
Msa0921570	AT1G48590.1	66.272	169	56	1	9	177	2	169	3.92e-80	235
Msa0921570	AT1G48590.2	66.272	169	56	1	9	177	33	200	8.47e-80	236
Msa0921570	AT5G37740.1	61.310	168	62	1	13	177	1	168	1.19e-73	219
Msa0921570	AT1G70810.1	60.606	165	65	0	13	177	1	165	7.74e-71	212
Msa0921570	AT5G37740.2	57.865	178	62	2	13	177	1	178	4.36e-70	210
Msa0921570	AT1G66360.1	59.756	164	64	1	13	174	1	164	6.32e-70	209
Msa0921570	AT1G70790.3	61.350	163	61	1	17	177	6	168	1.55e-68	206
Msa0921570	AT1G70790.2	61.350	163	61	1	17	177	6	168	1.55e-68	206
Msa0921570	AT1G70790.1	61.350	163	61	1	17	177	6	168	1.55e-68	206
Msa0921570	AT2G01540.1	57.669	163	67	1	17	177	6	168	1.52e-66	201
Msa0921570	AT1G23140.1	57.407	162	69	0	13	174	1	162	2.11e-65	198
Msa0921570	AT1G70800.1	55.758	165	73	0	13	177	10	174	1.50e-64	196
Msa0921570	AT1G48590.3	52.071	169	48	2	9	177	33	168	2.34e-56	175
Msa0921570	AT1G70790.4	59.231	130	51	1	50	177	2	131	5.86e-50	158
Msa0921570	AT4G05330.2	43.125	160	90	1	13	171	140	299	1.31e-37	131
Msa0921570	AT5G47710.1	39.634	164	97	2	13	174	1	164	1.98e-37	127
Msa0921570	AT5G47710.2	39.634	164	97	2	13	174	1	164	1.98e-37	127
Msa0921570	AT5G47710.3	39.634	164	97	2	13	174	1	164	1.98e-37	127
Msa0921570	AT5G47710.4	39.634	164	97	2	13	174	1	164	1.98e-37	127
Msa0921570	AT4G05330.3	43.125	160	90	1	13	171	175	334	4.83e-37	130
Msa0921570	AT4G05330.1	43.125	160	90	1	13	171	175	334	4.83e-37	130
Msa0921570	AT4G21160.2	40.588	170	97	2	6	171	166	335	7.44e-36	127
Msa0921570	AT4G21160.3	40.588	170	97	2	6	171	166	335	7.44e-36	127
Msa0921570	AT4G21160.1	40.588	170	97	2	6	171	166	335	7.44e-36	127
Msa0921570	AT4G21160.4	40.588	170	97	2	6	171	166	335	7.44e-36	127
Msa0921570	AT3G07940.1	42.500	160	91	1	13	171	224	383	7.01e-35	126
Msa0921570	AT5G04220.1	44.706	85	42	3	17	96	38	122	3.21e-12	63.9
Msa0921570	AT5G04220.2	44.706	85	42	3	17	96	260	344	4.20e-12	63.9
Msa0921570	AT5G04220.3	44.706	85	42	3	17	96	198	282	4.82e-12	63.5
Msa0921570	AT1G03370.2	38.889	90	48	2	20	102	3	92	1.18e-11	62.8
Msa0921570	AT1G03370.1	38.889	90	48	2	20	102	3	92	1.22e-11	62.8

Find 51 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAATTAAATTGTGAATTTA+TGG	0.046309	6_2:-58962421	None:intergenic
TTATTATGCCTTCAACTATA+TGG	0.260012	6_2:+58964575	Msa0921570:three_prime_UTR
TAATTAAGATTAAGAATAAA+AGG	0.265011	6_2:+58962503	Msa0921570:five_prime_UTR
CAGTCACTTACCAATGTAAC+TGG	0.280969	6_2:-58963380	None:intergenic
TTGCACTGGATTGATCTTCC+TGG	0.299246	6_2:+58964516	Msa0921570:CDS
AGAATAAAAGGAAGAAGAAA+TGG	0.355286	6_2:+58962515	Msa0921570:exon
TCTCTGATGGAGAATCTATT+AGG	0.386056	6_2:+58962564	Msa0921570:CDS
TACGGTGCCGTTTGCAAGGC+CGG	0.395496	6_2:-58964361	None:intergenic
ATAAATTATACATTACAAAC+TGG	0.400469	6_2:-58964686	None:intergenic
ATTGATCTTCCTGGTTCTAA+AGG	0.412234	6_2:+58964525	Msa0921570:CDS
GCAGTCTAAGGATCATATCT+TGG	0.412690	6_2:-58964461	None:intergenic
TACATCTTGATTACAACATA+AGG	0.417586	6_2:-58962651	None:intergenic
ACCAATGTAACTGGGTGATT+AGG	0.417936	6_2:-58963371	None:intergenic
TGGTTGTATCCGCTTGATTA+CGG	0.424732	6_2:-58964379	None:intergenic
CCACAAAACCATATAGTTGA+AGG	0.436431	6_2:-58964583	None:intergenic
GATCTATAACAGACAGAGTA+AGG	0.440032	6_2:-58963349	None:intergenic
GCAAGGCAGTTGTGCTTGCT+TGG	0.456659	6_2:-58964399	None:intergenic
TGTAATCAAGATGTATAATC+AGG	0.457131	6_2:+58962659	Msa0921570:CDS
TTTAGCAAAGATGACAAAAT+GGG	0.458958	6_2:+58964285	Msa0921570:CDS
GCCTTGAGGATGAATGTAAC+CGG	0.480599	6_2:+58964342	Msa0921570:CDS
ATAATAAATACAGCTCTCTT+CGG	0.487354	6_2:-58964421	None:intergenic
AATGTAACCGGCCTTGCAAA+CGG	0.489187	6_2:+58964354	Msa0921570:CDS
TGATTACGGTGCCGTTTGCA+AGG	0.511473	6_2:-58964365	None:intergenic
ACAAAGATGTGTACTATGAA+TGG	0.513312	6_2:-58962340	None:intergenic
AAGTGGAAATCAGTTTGCAC+TGG	0.519685	6_2:+58964502	Msa0921570:CDS
CATCCTCAAGGCTTCTATGT+AGG	0.521839	6_2:-58964331	None:intergenic
AGCTGTATTTATTATAGCAA+TGG	0.541875	6_2:+58964429	Msa0921570:CDS
GCCGGTTACATTCATCCTCA+AGG	0.552249	6_2:-58964343	None:intergenic
TCCTAATCACCCAGTTACAT+TGG	0.552725	6_2:+58963370	Msa0921570:CDS
GTGTACTATGAATGGATCAA+TGG	0.556580	6_2:-58962332	None:intergenic
AGAATCTATTAGGCCTTCTG+AGG	0.559791	6_2:+58962574	Msa0921570:CDS
GATTATAAACCTTTAGAACC+AGG	0.577547	6_2:-58964534	None:intergenic
GATCCTTAGACTGCAAAATG+TGG	0.590504	6_2:+58964470	Msa0921570:CDS
CAAGGCTTCTATGTAGGCCG+CGG	0.594100	6_2:-58964325	None:intergenic
AAATGTGGAATGTGGTGAAG+TGG	0.600672	6_2:+58964485	Msa0921570:CDS
TAGTACACATCTTTGTCAGT+GGG	0.602092	6_2:+58962347	Msa0921570:five_prime_UTR
GCTTCACACGAACCCTCAGA+AGG	0.617469	6_2:-58962587	None:intergenic
GTAAGGTCTTCATTCCACTC+AGG	0.618175	6_2:-58963332	None:intergenic
AAAAGAATGTTAATCCTGAG+TGG	0.623609	6_2:+58963318	Msa0921570:CDS
AGATGACAAAATGGGAGATG+CGG	0.626598	6_2:+58964293	Msa0921570:CDS
ATTTATGGAAAGAAAATGAG+AGG	0.629207	6_2:-58962406	None:intergenic
ATAGTACACATCTTTGTCAG+TGG	0.635539	6_2:+58962346	Msa0921570:five_prime_UTR
AAATACAGCTCTCTTCGGCA+AGG	0.644242	6_2:-58964416	None:intergenic
GAATCTATTAGGCCTTCTGA+GGG	0.645365	6_2:+58962575	Msa0921570:CDS
CGGCCTACATAGAAGCCTTG+AGG	0.646309	6_2:+58964328	Msa0921570:CDS
CTGAGGGTTCGTGTGAAGCG+TGG	0.662794	6_2:+58962591	Msa0921570:CDS
TACGAACATCACGAACAGCA+AGG	0.662931	6_2:-58962620	None:intergenic
AGTCACTTACCAATGTAACT+GGG	0.676398	6_2:-58963379	None:intergenic
CAAACGGCACCGTAATCAAG+CGG	0.692308	6_2:+58964370	Msa0921570:CDS
AGATGCGGTATTTGACGCCG+CGG	0.709574	6_2:+58964308	Msa0921570:CDS
AGACTGCAAAATGTGGAATG+TGG	0.721570	6_2:+58964477	Msa0921570:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATTATTATTATTATTATA+TGG	-	chr6_2:58962485-58962504	None:intergenic	0.0%
!!	TAATTATTATTATTATTATA+TGG	-	chr6_2:58962485-58962504	None:intergenic	0.0%
!!	TAAATTAAATTGTGAATTTA+TGG	-	chr6_2:58962424-58962443	None:intergenic	10.0%
!!	TAATTAAGATTAAGAATAAA+AGG	+	chr6_2:58962503-58962522	Msa0921570:five_prime_UTR	10.0%
!!	TTGTTGAAAAAAATATTAAA+GGG	-	chr6_2:58962787-58962806	None:intergenic	10.0%
!!	TTTGTTGAAAAAAATATTAA+AGG	-	chr6_2:58962788-58962807	None:intergenic	10.0%
!!	GTAAAAAAAAATCAAATAAA+AGG	-	chr6_2:58963953-58963972	None:intergenic	10.0%
!!	TAAATTAAATTGTGAATTTA+TGG	-	chr6_2:58962424-58962443	None:intergenic	10.0%
!!	TAATTAAGATTAAGAATAAA+AGG	+	chr6_2:58962503-58962522	Msa0921570:five_prime_UTR	10.0%
!!	TTGTTGAAAAAAATATTAAA+GGG	-	chr6_2:58962787-58962806	None:intergenic	10.0%
!!	TTTGTTGAAAAAAATATTAA+AGG	-	chr6_2:58962788-58962807	None:intergenic	10.0%
!!	GTAAAAAAAAATCAAATAAA+AGG	-	chr6_2:58963953-58963972	None:intergenic	10.0%
!!	TGTTGAAAAAAATATTAAAG+GGG	-	chr6_2:58962786-58962805	None:intergenic	15.0%
!!!	TTTTCATGCTTTTAATATAT+TGG	+	chr6_2:58962950-58962969	Msa0921570:intron	15.0%
!!!	AAATCAAATTGTTCATTTTA+TGG	-	chr6_2:58963906-58963925	None:intergenic	15.0%
!!!	TTACAAATATTTGACTTAAT+CGG	-	chr6_2:58964108-58964127	None:intergenic	15.0%
!!	ATAAATTATACATTACAAAC+TGG	-	chr6_2:58964689-58964708	None:intergenic	15.0%
!!	TGTTGAAAAAAATATTAAAG+GGG	-	chr6_2:58962786-58962805	None:intergenic	15.0%
!!!	TTTTCATGCTTTTAATATAT+TGG	+	chr6_2:58962950-58962969	Msa0921570:intron	15.0%
!!!	AAATCAAATTGTTCATTTTA+TGG	-	chr6_2:58963906-58963925	None:intergenic	15.0%
!!!	TTACAAATATTTGACTTAAT+CGG	-	chr6_2:58964108-58964127	None:intergenic	15.0%
!!	ATAAATTATACATTACAAAC+TGG	-	chr6_2:58964689-58964708	None:intergenic	15.0%
!!!	CTTTTGATTTATTGAATCAA+GGG	+	chr6_2:58962826-58962845	Msa0921570:intron	20.0%
!!	ATTCAAAGTGATAAAAGAAA+GGG	-	chr6_2:58963776-58963795	None:intergenic	20.0%
!!	AATCAAATAAAAGGTAAAAC+AGG	-	chr6_2:58963944-58963963	None:intergenic	20.0%
!!	AAATATTTGTAATGATCTGA+CGG	+	chr6_2:58964116-58964135	Msa0921570:intron	20.0%
!!	TTGAATGAACAAATATTGAT+AGG	-	chr6_2:58964199-58964218	None:intergenic	20.0%
!!	TATTTGTTCATTCAATGTAT+TGG	+	chr6_2:58964204-58964223	Msa0921570:intron	20.0%
!!!	CTTTTGATTTATTGAATCAA+GGG	+	chr6_2:58962826-58962845	Msa0921570:intron	20.0%
!!	ATTCAAAGTGATAAAAGAAA+GGG	-	chr6_2:58963776-58963795	None:intergenic	20.0%
!!	AATCAAATAAAAGGTAAAAC+AGG	-	chr6_2:58963944-58963963	None:intergenic	20.0%
!!	AAATATTTGTAATGATCTGA+CGG	+	chr6_2:58964116-58964135	Msa0921570:intron	20.0%
!!	TTGAATGAACAAATATTGAT+AGG	-	chr6_2:58964199-58964218	None:intergenic	20.0%
!!	TATTTGTTCATTCAATGTAT+TGG	+	chr6_2:58964204-58964223	Msa0921570:intron	20.0%
!	ATTTATGGAAAGAAAATGAG+AGG	-	chr6_2:58962409-58962428	None:intergenic	25.0%
!	AGAATAAAAGGAAGAAGAAA+TGG	+	chr6_2:58962515-58962534	Msa0921570:exon	25.0%
!	TACATCTTGATTACAACATA+AGG	-	chr6_2:58962654-58962673	None:intergenic	25.0%
!	TGTAATCAAGATGTATAATC+AGG	+	chr6_2:58962659-58962678	Msa0921570:CDS	25.0%
!	GAACTAACATTAAGAAAAGT+TGG	-	chr6_2:58962757-58962776	None:intergenic	25.0%
!	GAAAAAAATATTAAAGGGGT+TGG	-	chr6_2:58962782-58962801	None:intergenic	25.0%
!!!	GCTTTTGATTTATTGAATCA+AGG	+	chr6_2:58962825-58962844	Msa0921570:intron	25.0%
!	TCAATAACAAGAAAATTGAG+TGG	-	chr6_2:58962903-58962922	None:intergenic	25.0%
!	TAATATATTGGATTGCATCA+AGG	+	chr6_2:58962962-58962981	Msa0921570:intron	25.0%
!	AATATATTGGATTGCATCAA+GGG	+	chr6_2:58962963-58962982	Msa0921570:intron	25.0%
!	ATTGATGTTGAATGTAACAT+AGG	+	chr6_2:58963175-58963194	Msa0921570:intron	25.0%
!!!	ACATAGGTTTTAGTTATTGA+AGG	+	chr6_2:58963191-58963210	Msa0921570:intron	25.0%
!!!	CATAGGTTTTAGTTATTGAA+GGG	+	chr6_2:58963192-58963211	Msa0921570:intron	25.0%
!	CAAAAACTGTTTAACTGAAA+TGG	-	chr6_2:58963450-58963469	None:intergenic	25.0%
!	CATTCAAAGTGATAAAAGAA+AGG	-	chr6_2:58963777-58963796	None:intergenic	25.0%
!	TTATGGTCAGAAACATTTAA+TGG	-	chr6_2:58963889-58963908	None:intergenic	25.0%
!	GTAAAAATTCTTTACACTGA+AGG	+	chr6_2:58964157-58964176	Msa0921570:intron	25.0%
!!	TTTTAGCAAAGATGACAAAA+TGG	+	chr6_2:58964284-58964303	Msa0921570:CDS	25.0%
!	TTTAGCAAAGATGACAAAAT+GGG	+	chr6_2:58964285-58964304	Msa0921570:CDS	25.0%
!	ATAATAAATACAGCTCTCTT+CGG	-	chr6_2:58964424-58964443	None:intergenic	25.0%
!	AGCTGTATTTATTATAGCAA+TGG	+	chr6_2:58964429-58964448	Msa0921570:CDS	25.0%
!	TTATTATGCCTTCAACTATA+TGG	+	chr6_2:58964575-58964594	Msa0921570:three_prime_UTR	25.0%
!	ATTTATGGAAAGAAAATGAG+AGG	-	chr6_2:58962409-58962428	None:intergenic	25.0%
!	AGAATAAAAGGAAGAAGAAA+TGG	+	chr6_2:58962515-58962534	Msa0921570:exon	25.0%
!	TACATCTTGATTACAACATA+AGG	-	chr6_2:58962654-58962673	None:intergenic	25.0%
!	TGTAATCAAGATGTATAATC+AGG	+	chr6_2:58962659-58962678	Msa0921570:CDS	25.0%
!	GAACTAACATTAAGAAAAGT+TGG	-	chr6_2:58962757-58962776	None:intergenic	25.0%
!	GAAAAAAATATTAAAGGGGT+TGG	-	chr6_2:58962782-58962801	None:intergenic	25.0%
!!!	GCTTTTGATTTATTGAATCA+AGG	+	chr6_2:58962825-58962844	Msa0921570:intron	25.0%
!	TCAATAACAAGAAAATTGAG+TGG	-	chr6_2:58962903-58962922	None:intergenic	25.0%
!	TAATATATTGGATTGCATCA+AGG	+	chr6_2:58962962-58962981	Msa0921570:intron	25.0%
!	AATATATTGGATTGCATCAA+GGG	+	chr6_2:58962963-58962982	Msa0921570:intron	25.0%
!	ATTGATGTTGAATGTAACAT+AGG	+	chr6_2:58963175-58963194	Msa0921570:intron	25.0%
!!!	ACATAGGTTTTAGTTATTGA+AGG	+	chr6_2:58963191-58963210	Msa0921570:intron	25.0%
!!!	CATAGGTTTTAGTTATTGAA+GGG	+	chr6_2:58963192-58963211	Msa0921570:intron	25.0%
!	CAAAAACTGTTTAACTGAAA+TGG	-	chr6_2:58963450-58963469	None:intergenic	25.0%
!	CATTCAAAGTGATAAAAGAA+AGG	-	chr6_2:58963777-58963796	None:intergenic	25.0%
!	TTATGGTCAGAAACATTTAA+TGG	-	chr6_2:58963889-58963908	None:intergenic	25.0%
!	GTAAAAATTCTTTACACTGA+AGG	+	chr6_2:58964157-58964176	Msa0921570:intron	25.0%
!!	TTTTAGCAAAGATGACAAAA+TGG	+	chr6_2:58964284-58964303	Msa0921570:CDS	25.0%
!	TTTAGCAAAGATGACAAAAT+GGG	+	chr6_2:58964285-58964304	Msa0921570:CDS	25.0%
!	ATAATAAATACAGCTCTCTT+CGG	-	chr6_2:58964424-58964443	None:intergenic	25.0%
!	AGCTGTATTTATTATAGCAA+TGG	+	chr6_2:58964429-58964448	Msa0921570:CDS	25.0%
!	TTATTATGCCTTCAACTATA+TGG	+	chr6_2:58964575-58964594	Msa0921570:three_prime_UTR	25.0%
	ACAAAGATGTGTACTATGAA+TGG	-	chr6_2:58962343-58962362	None:intergenic	30.0%
	ATGAAAAAAATAGTGGTGGT+GGG	-	chr6_2:58962374-58962393	None:intergenic	30.0%
	GATGTGCATGAAAAAAATAG+TGG	-	chr6_2:58962381-58962400	None:intergenic	30.0%
!!!	AGAGATTTTTTTGATGCTGA+TGG	-	chr6_2:58962549-58962568	None:intergenic	30.0%
	AGCATCAAAAAAATCTCTGA+TGG	+	chr6_2:58962551-58962570	Msa0921570:CDS	30.0%
!	GTTATGATGATGATGATGAA+TGG	-	chr6_2:58962713-58962732	None:intergenic	30.0%
	TGAAGAAAATGAGTAGAAAC+TGG	+	chr6_2:58963073-58963092	Msa0921570:intron	30.0%
!!!	TGTTGACACTTTTTCTATAC+AGG	+	chr6_2:58963105-58963124	Msa0921570:intron	30.0%
	AAAAGAATGTTAATCCTGAG+TGG	+	chr6_2:58963318-58963337	Msa0921570:CDS	30.0%
	CTGCGGATAAAGAAATATAT+CGG	-	chr6_2:58963642-58963661	None:intergenic	30.0%
	TTTATGGTTCCAATAAAACC+AGG	+	chr6_2:58963679-58963698	Msa0921570:intron	30.0%
!!!	TCTCAATATCCTGGTTTTAT+TGG	-	chr6_2:58963691-58963710	None:intergenic	30.0%
	GATAAAAGAAAGGGTTTGAA+AGG	-	chr6_2:58963767-58963786	None:intergenic	30.0%
!!	TTGATAATGAGTGTCCTAAA+GGG	+	chr6_2:58963833-58963852	Msa0921570:intron	30.0%
	ACAGTATAAACATTTGACAC+TGG	-	chr6_2:58964042-58964061	None:intergenic	30.0%
!!	GATTATAAACCTTTAGAACC+AGG	-	chr6_2:58964537-58964556	None:intergenic	30.0%
!!!	CTATATGGTTTTGTGGATTA+TGG	+	chr6_2:58964590-58964609	Msa0921570:three_prime_UTR	30.0%
	ACAAAGATGTGTACTATGAA+TGG	-	chr6_2:58962343-58962362	None:intergenic	30.0%
	ATGAAAAAAATAGTGGTGGT+GGG	-	chr6_2:58962374-58962393	None:intergenic	30.0%
	GATGTGCATGAAAAAAATAG+TGG	-	chr6_2:58962381-58962400	None:intergenic	30.0%
!!!	AGAGATTTTTTTGATGCTGA+TGG	-	chr6_2:58962549-58962568	None:intergenic	30.0%
	AGCATCAAAAAAATCTCTGA+TGG	+	chr6_2:58962551-58962570	Msa0921570:CDS	30.0%
!	GTTATGATGATGATGATGAA+TGG	-	chr6_2:58962713-58962732	None:intergenic	30.0%
	TGAAGAAAATGAGTAGAAAC+TGG	+	chr6_2:58963073-58963092	Msa0921570:intron	30.0%
!!!	TGTTGACACTTTTTCTATAC+AGG	+	chr6_2:58963105-58963124	Msa0921570:intron	30.0%
	AAAAGAATGTTAATCCTGAG+TGG	+	chr6_2:58963318-58963337	Msa0921570:CDS	30.0%
	CTGCGGATAAAGAAATATAT+CGG	-	chr6_2:58963642-58963661	None:intergenic	30.0%
	TTTATGGTTCCAATAAAACC+AGG	+	chr6_2:58963679-58963698	Msa0921570:intron	30.0%
!!!	TCTCAATATCCTGGTTTTAT+TGG	-	chr6_2:58963691-58963710	None:intergenic	30.0%
	GATAAAAGAAAGGGTTTGAA+AGG	-	chr6_2:58963767-58963786	None:intergenic	30.0%
!!	TTGATAATGAGTGTCCTAAA+GGG	+	chr6_2:58963833-58963852	Msa0921570:intron	30.0%
	ACAGTATAAACATTTGACAC+TGG	-	chr6_2:58964042-58964061	None:intergenic	30.0%
!!	GATTATAAACCTTTAGAACC+AGG	-	chr6_2:58964537-58964556	None:intergenic	30.0%
!!!	CTATATGGTTTTGTGGATTA+TGG	+	chr6_2:58964590-58964609	Msa0921570:three_prime_UTR	30.0%
	GTGTACTATGAATGGATCAA+TGG	-	chr6_2:58962335-58962354	None:intergenic	35.0%
	ATAGTACACATCTTTGTCAG+TGG	+	chr6_2:58962346-58962365	Msa0921570:five_prime_UTR	35.0%
	TAGTACACATCTTTGTCAGT+GGG	+	chr6_2:58962347-58962366	Msa0921570:five_prime_UTR	35.0%
	CATGAAAAAAATAGTGGTGG+TGG	-	chr6_2:58962375-58962394	None:intergenic	35.0%
	GTGCATGAAAAAAATAGTGG+TGG	-	chr6_2:58962378-58962397	None:intergenic	35.0%
	TCTCTGATGGAGAATCTATT+AGG	+	chr6_2:58962564-58962583	Msa0921570:CDS	35.0%
	GATCTATAACAGACAGAGTA+AGG	-	chr6_2:58963352-58963371	None:intergenic	35.0%
	AGTCACTTACCAATGTAACT+GGG	-	chr6_2:58963382-58963401	None:intergenic	35.0%
	TATTCAGTGTTGTCGAATAG+CGG	+	chr6_2:58963490-58963509	Msa0921570:intron	35.0%
	TGACAACACGGATCTATTTA+TGG	+	chr6_2:58963663-58963682	Msa0921570:intron	35.0%
	ATGCTAAGATCTCAATATCC+TGG	-	chr6_2:58963700-58963719	None:intergenic	35.0%
	TCATTATCAAGACCGCAAAT+GGG	-	chr6_2:58963823-58963842	None:intergenic	35.0%
!!	CTTGATAATGAGTGTCCTAA+AGG	+	chr6_2:58963832-58963851	Msa0921570:intron	35.0%
!	CTTAACCAGTTTTACCCTTT+AGG	-	chr6_2:58963850-58963869	None:intergenic	35.0%
	AGCACTCGTTAAAGAAACAA+TGG	-	chr6_2:58963975-58963994	None:intergenic	35.0%
	CTCAAAAAAATGAGTTCCCT+TGG	-	chr6_2:58963998-58964017	None:intergenic	35.0%
	CAATGTATTGGATTGCTCAT+TGG	+	chr6_2:58964216-58964235	Msa0921570:intron	35.0%
!	ATTCCACATTTTGCAGTCTA+AGG	-	chr6_2:58964476-58964495	None:intergenic	35.0%
!!	ATTGATCTTCCTGGTTCTAA+AGG	+	chr6_2:58964525-58964544	Msa0921570:CDS	35.0%
	CCACAAAACCATATAGTTGA+AGG	-	chr6_2:58964586-58964605	None:intergenic	35.0%
!!	CCTTCAACTATATGGTTTTG+TGG	+	chr6_2:58964583-58964602	Msa0921570:three_prime_UTR	35.0%
	GTGTACTATGAATGGATCAA+TGG	-	chr6_2:58962335-58962354	None:intergenic	35.0%
	ATAGTACACATCTTTGTCAG+TGG	+	chr6_2:58962346-58962365	Msa0921570:five_prime_UTR	35.0%
	TAGTACACATCTTTGTCAGT+GGG	+	chr6_2:58962347-58962366	Msa0921570:five_prime_UTR	35.0%
	CATGAAAAAAATAGTGGTGG+TGG	-	chr6_2:58962375-58962394	None:intergenic	35.0%
	GTGCATGAAAAAAATAGTGG+TGG	-	chr6_2:58962378-58962397	None:intergenic	35.0%
	TCTCTGATGGAGAATCTATT+AGG	+	chr6_2:58962564-58962583	Msa0921570:CDS	35.0%
	GATCTATAACAGACAGAGTA+AGG	-	chr6_2:58963352-58963371	None:intergenic	35.0%
	AGTCACTTACCAATGTAACT+GGG	-	chr6_2:58963382-58963401	None:intergenic	35.0%
	TATTCAGTGTTGTCGAATAG+CGG	+	chr6_2:58963490-58963509	Msa0921570:intron	35.0%
	TGACAACACGGATCTATTTA+TGG	+	chr6_2:58963663-58963682	Msa0921570:intron	35.0%
	ATGCTAAGATCTCAATATCC+TGG	-	chr6_2:58963700-58963719	None:intergenic	35.0%
	TCATTATCAAGACCGCAAAT+GGG	-	chr6_2:58963823-58963842	None:intergenic	35.0%
!!	CTTGATAATGAGTGTCCTAA+AGG	+	chr6_2:58963832-58963851	Msa0921570:intron	35.0%
!	CTTAACCAGTTTTACCCTTT+AGG	-	chr6_2:58963850-58963869	None:intergenic	35.0%
	AGCACTCGTTAAAGAAACAA+TGG	-	chr6_2:58963975-58963994	None:intergenic	35.0%
	CTCAAAAAAATGAGTTCCCT+TGG	-	chr6_2:58963998-58964017	None:intergenic	35.0%
	CAATGTATTGGATTGCTCAT+TGG	+	chr6_2:58964216-58964235	Msa0921570:intron	35.0%
!	ATTCCACATTTTGCAGTCTA+AGG	-	chr6_2:58964476-58964495	None:intergenic	35.0%
!!	ATTGATCTTCCTGGTTCTAA+AGG	+	chr6_2:58964525-58964544	Msa0921570:CDS	35.0%
	CCACAAAACCATATAGTTGA+AGG	-	chr6_2:58964586-58964605	None:intergenic	35.0%
!!	CCTTCAACTATATGGTTTTG+TGG	+	chr6_2:58964583-58964602	Msa0921570:three_prime_UTR	35.0%
	AGAATCTATTAGGCCTTCTG+AGG	+	chr6_2:58962574-58962593	Msa0921570:CDS	40.0%
	GAATCTATTAGGCCTTCTGA+GGG	+	chr6_2:58962575-58962594	Msa0921570:CDS	40.0%
	TCCTAATCACCCAGTTACAT+TGG	+	chr6_2:58963370-58963389	Msa0921570:CDS	40.0%
	ACCAATGTAACTGGGTGATT+AGG	-	chr6_2:58963374-58963393	None:intergenic	40.0%
	CAGTCACTTACCAATGTAAC+TGG	-	chr6_2:58963383-58963402	None:intergenic	40.0%
	CAAAGTGTGCTGTCAAATAG+CGG	+	chr6_2:58963580-58963599	Msa0921570:intron	40.0%
	TTTATCCGCAGTTGACAACA+CGG	+	chr6_2:58963651-58963670	Msa0921570:intron	40.0%
	TCCATCTTAGCATGAAACTG+TGG	+	chr6_2:58963730-58963749	Msa0921570:intron	40.0%
	TTGTCCATTCTACCCATTTG+CGG	+	chr6_2:58963808-58963827	Msa0921570:intron	40.0%
	CTCATTATCAAGACCGCAAA+TGG	-	chr6_2:58963824-58963843	None:intergenic	40.0%
	AGTGTCCTAAAGGGTAAAAC+TGG	+	chr6_2:58963842-58963861	Msa0921570:intron	40.0%
	TTTCTTTAACGAGTGCTCCA+AGG	+	chr6_2:58963978-58963997	Msa0921570:intron	40.0%
	TTCTTTAACGAGTGCTCCAA+GGG	+	chr6_2:58963979-58963998	Msa0921570:intron	40.0%
	AGATGACAAAATGGGAGATG+CGG	+	chr6_2:58964293-58964312	Msa0921570:CDS	40.0%
	TGGTTGTATCCGCTTGATTA+CGG	-	chr6_2:58964382-58964401	None:intergenic	40.0%
	GCAGTCTAAGGATCATATCT+TGG	-	chr6_2:58964464-58964483	None:intergenic	40.0%
	GATCCTTAGACTGCAAAATG+TGG	+	chr6_2:58964470-58964489	Msa0921570:CDS	40.0%
	AGACTGCAAAATGTGGAATG+TGG	+	chr6_2:58964477-58964496	Msa0921570:CDS	40.0%
	AAATGTGGAATGTGGTGAAG+TGG	+	chr6_2:58964485-58964504	Msa0921570:CDS	40.0%
	AAGTGGAAATCAGTTTGCAC+TGG	+	chr6_2:58964502-58964521	Msa0921570:CDS	40.0%
	AGAATCTATTAGGCCTTCTG+AGG	+	chr6_2:58962574-58962593	Msa0921570:CDS	40.0%
	GAATCTATTAGGCCTTCTGA+GGG	+	chr6_2:58962575-58962594	Msa0921570:CDS	40.0%
	TCCTAATCACCCAGTTACAT+TGG	+	chr6_2:58963370-58963389	Msa0921570:CDS	40.0%
	ACCAATGTAACTGGGTGATT+AGG	-	chr6_2:58963374-58963393	None:intergenic	40.0%
	CAGTCACTTACCAATGTAAC+TGG	-	chr6_2:58963383-58963402	None:intergenic	40.0%
	CAAAGTGTGCTGTCAAATAG+CGG	+	chr6_2:58963580-58963599	Msa0921570:intron	40.0%
	TTTATCCGCAGTTGACAACA+CGG	+	chr6_2:58963651-58963670	Msa0921570:intron	40.0%
	TCCATCTTAGCATGAAACTG+TGG	+	chr6_2:58963730-58963749	Msa0921570:intron	40.0%
	TTGTCCATTCTACCCATTTG+CGG	+	chr6_2:58963808-58963827	Msa0921570:intron	40.0%
	CTCATTATCAAGACCGCAAA+TGG	-	chr6_2:58963824-58963843	None:intergenic	40.0%
	AGTGTCCTAAAGGGTAAAAC+TGG	+	chr6_2:58963842-58963861	Msa0921570:intron	40.0%
	TTTCTTTAACGAGTGCTCCA+AGG	+	chr6_2:58963978-58963997	Msa0921570:intron	40.0%
	TTCTTTAACGAGTGCTCCAA+GGG	+	chr6_2:58963979-58963998	Msa0921570:intron	40.0%
	AGATGACAAAATGGGAGATG+CGG	+	chr6_2:58964293-58964312	Msa0921570:CDS	40.0%
	TGGTTGTATCCGCTTGATTA+CGG	-	chr6_2:58964382-58964401	None:intergenic	40.0%
	GCAGTCTAAGGATCATATCT+TGG	-	chr6_2:58964464-58964483	None:intergenic	40.0%
	GATCCTTAGACTGCAAAATG+TGG	+	chr6_2:58964470-58964489	Msa0921570:CDS	40.0%
	AGACTGCAAAATGTGGAATG+TGG	+	chr6_2:58964477-58964496	Msa0921570:CDS	40.0%
	AAATGTGGAATGTGGTGAAG+TGG	+	chr6_2:58964485-58964504	Msa0921570:CDS	40.0%
	AAGTGGAAATCAGTTTGCAC+TGG	+	chr6_2:58964502-58964521	Msa0921570:CDS	40.0%
	TACGAACATCACGAACAGCA+AGG	-	chr6_2:58962623-58962642	None:intergenic	45.0%
	GTAAGGTCTTCATTCCACTC+AGG	-	chr6_2:58963335-58963354	None:intergenic	45.0%
	TAGATCCGTGTTGTCAACTG+CGG	-	chr6_2:58963659-58963678	None:intergenic	45.0%
	GCCACAGTTTCATGCTAAGA+TGG	-	chr6_2:58963734-58963753	None:intergenic	45.0%
	GGGTTTGAAAGGTTTGCATG+AGG	-	chr6_2:58963756-58963775	None:intergenic	45.0%
	AAGACCGCAAATGGGTAGAA+TGG	-	chr6_2:58963815-58963834	None:intergenic	45.0%
	GGCAGTGTATCAGAACATCT+CGG	-	chr6_2:58964021-58964040	None:intergenic	45.0%
	CATCCTCAAGGCTTCTATGT+AGG	-	chr6_2:58964334-58964353	None:intergenic	45.0%
	GCCTTGAGGATGAATGTAAC+CGG	+	chr6_2:58964342-58964361	Msa0921570:CDS	45.0%
	AATGTAACCGGCCTTGCAAA+CGG	+	chr6_2:58964354-58964373	Msa0921570:CDS	45.0%
	AAATACAGCTCTCTTCGGCA+AGG	-	chr6_2:58964419-58964438	None:intergenic	45.0%
	TTGCACTGGATTGATCTTCC+TGG	+	chr6_2:58964516-58964535	Msa0921570:CDS	45.0%
	TACGAACATCACGAACAGCA+AGG	-	chr6_2:58962623-58962642	None:intergenic	45.0%
	GTAAGGTCTTCATTCCACTC+AGG	-	chr6_2:58963335-58963354	None:intergenic	45.0%
	TAGATCCGTGTTGTCAACTG+CGG	-	chr6_2:58963659-58963678	None:intergenic	45.0%
	GCCACAGTTTCATGCTAAGA+TGG	-	chr6_2:58963734-58963753	None:intergenic	45.0%
	GGGTTTGAAAGGTTTGCATG+AGG	-	chr6_2:58963756-58963775	None:intergenic	45.0%
	AAGACCGCAAATGGGTAGAA+TGG	-	chr6_2:58963815-58963834	None:intergenic	45.0%
	GGCAGTGTATCAGAACATCT+CGG	-	chr6_2:58964021-58964040	None:intergenic	45.0%
	CATCCTCAAGGCTTCTATGT+AGG	-	chr6_2:58964334-58964353	None:intergenic	45.0%
	GCCTTGAGGATGAATGTAAC+CGG	+	chr6_2:58964342-58964361	Msa0921570:CDS	45.0%
	AATGTAACCGGCCTTGCAAA+CGG	+	chr6_2:58964354-58964373	Msa0921570:CDS	45.0%
	AAATACAGCTCTCTTCGGCA+AGG	-	chr6_2:58964419-58964438	None:intergenic	45.0%
	TTGCACTGGATTGATCTTCC+TGG	+	chr6_2:58964516-58964535	Msa0921570:CDS	45.0%
!!	AAAAATAAAATAAAATAAAG+TGG	-	chr6_2:58962852-58962871	None:intergenic	5.0%
!!	AAAAATAAAATAAAATAAAG+TGG	-	chr6_2:58962852-58962871	None:intergenic	5.0%
	TACAGCAGTGTACAGCGTAG+CGG	+	chr6_2:58963514-58963533	Msa0921570:intron	50.0%
	GCCGGTTACATTCATCCTCA+AGG	-	chr6_2:58964346-58964365	None:intergenic	50.0%
!!	TGATTACGGTGCCGTTTGCA+AGG	-	chr6_2:58964368-58964387	None:intergenic	50.0%
	CAAACGGCACCGTAATCAAG+CGG	+	chr6_2:58964370-58964389	Msa0921570:CDS	50.0%
	TACAGCAGTGTACAGCGTAG+CGG	+	chr6_2:58963514-58963533	Msa0921570:intron	50.0%
	GCCGGTTACATTCATCCTCA+AGG	-	chr6_2:58964346-58964365	None:intergenic	50.0%
!!	TGATTACGGTGCCGTTTGCA+AGG	-	chr6_2:58964368-58964387	None:intergenic	50.0%
	CAAACGGCACCGTAATCAAG+CGG	+	chr6_2:58964370-58964389	Msa0921570:CDS	50.0%
	GCTTCACACGAACCCTCAGA+AGG	-	chr6_2:58962590-58962609	None:intergenic	55.0%
	AGATGCGGTATTTGACGCCG+CGG	+	chr6_2:58964308-58964327	Msa0921570:CDS	55.0%
	CAAGGCTTCTATGTAGGCCG+CGG	-	chr6_2:58964328-58964347	None:intergenic	55.0%
	CGGCCTACATAGAAGCCTTG+AGG	+	chr6_2:58964328-58964347	Msa0921570:CDS	55.0%
	GCAAGGCAGTTGTGCTTGCT+TGG	-	chr6_2:58964402-58964421	None:intergenic	55.0%
	GCTTCACACGAACCCTCAGA+AGG	-	chr6_2:58962590-58962609	None:intergenic	55.0%
	AGATGCGGTATTTGACGCCG+CGG	+	chr6_2:58964308-58964327	Msa0921570:CDS	55.0%
	CAAGGCTTCTATGTAGGCCG+CGG	-	chr6_2:58964328-58964347	None:intergenic	55.0%
	CGGCCTACATAGAAGCCTTG+AGG	+	chr6_2:58964328-58964347	Msa0921570:CDS	55.0%
	GCAAGGCAGTTGTGCTTGCT+TGG	-	chr6_2:58964402-58964421	None:intergenic	55.0%
	CTGAGGGTTCGTGTGAAGCG+TGG	+	chr6_2:58962591-58962610	Msa0921570:CDS	60.0%
!!	TACGGTGCCGTTTGCAAGGC+CGG	-	chr6_2:58964364-58964383	None:intergenic	60.0%
	CTGAGGGTTCGTGTGAAGCG+TGG	+	chr6_2:58962591-58962610	Msa0921570:CDS	60.0%
!!	TACGGTGCCGTTTGCAAGGC+CGG	-	chr6_2:58964364-58964383	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	58962317	58964751	58962317	ID=Msa0921570;Name=Msa0921570
chr6_2	mRNA	58962317	58964751	58962317	ID=Msa0921570-mRNA-1;Parent=Msa0921570;Name=Msa0921570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=217\|1\|1\|1\|1\|1\|3\|197\|177
chr6_2	exon	58962317	58962680	58962317	ID=Msa0921570-mRNA-1:exon:8821;Parent=Msa0921570-mRNA-1
chr6_2	exon	58963296	58963391	58963296	ID=Msa0921570-mRNA-1:exon:8822;Parent=Msa0921570-mRNA-1
chr6_2	exon	58964264	58964751	58964264	ID=Msa0921570-mRNA-1:exon:8823;Parent=Msa0921570-mRNA-1
chr6_2	five_prime_UTR	58962317	58962533	58962317	ID=Msa0921570-mRNA-1:five_prime_utr;Parent=Msa0921570-mRNA-1
chr6_2	CDS	58962534	58962680	58962534	ID=Msa0921570-mRNA-1:cds;Parent=Msa0921570-mRNA-1
chr6_2	CDS	58963296	58963391	58963296	ID=Msa0921570-mRNA-1:cds;Parent=Msa0921570-mRNA-1
chr6_2	CDS	58964264	58964554	58964264	ID=Msa0921570-mRNA-1:cds;Parent=Msa0921570-mRNA-1
chr6_2	three_prime_UTR	58964555	58964751	58964555	ID=Msa0921570-mRNA-1:three_prime_utr;Parent=Msa0921570-mRNA-1

Gene Sequence

>Msa0921570

ATGGAAGAATCACCATCAGCATCAAAAAAATCTCTGATGGAGAATCTATTAGGCCTTCTGAGGGTTCGTGTGAAGCGTGGTGTTAACCTTGCTGTTCGTGATGTTCGTAGCAGTGATCCTTATGTTGTAATCAAGATGTATAATCAGAAACTTAAGACTCATTTTAAGAAAAAGAATGTTAATCCTGAGTGGAATGAAGACCTTACTCTGTCTGTTATAGATCCTAATCACCCAGTTACATTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCGGTATTTGACGCCGCGGCCTACATAGAAGCCTTGAGGATGAATGTAACCGGCCTTGCAAACGGCACCGTAATCAAGCGGATACAACCAAGCAAGCACAACTGCCTTGCCGAAGAGAGCTGTATTTATTATAGCAATGGCAAAATTATCCAAGATATGATCCTTAGACTGCAAAATGTGGAATGTGGTGAAGTGGAAATCAGTTTGCACTGGATTGATCTTCCTGGTTCTAAAGGTTTATAA

Protein sequence

>Msa0921570

MEESPSASKKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMYNQKLKTHFKKKNVNPEWNEDLTLSVIDPNHPVTLTVYDHDTFSKDDKMGDAVFDAAAYIEALRMNVTGLANGTVIKRIQPSKHNCLAEESCIYYSNGKIIQDMILRLQNVECGEVEISLHWIDLPGSKGL*