Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810760 | XP_003615222.1 | 95.361 | 194 | 2 | 2 | 1 | 193 | 1 | 188 | 1.28e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810760 | G7KBE5 | 95.361 | 194 | 2 | 2 | 1 | 193 | 1 | 188 | 6.13e-129 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0810760 | 0.802321 | 5.930410e-49 | -8.615850e-47 |
| Msa0029850 | Msa0810760 | 0.809712 | 1.652315e-50 | -8.615850e-47 |
| Msa0042550 | Msa0810760 | 0.824002 | 1.021965e-53 | -8.615850e-47 |
| Msa0055070 | Msa0810760 | 0.815459 | 9.145822e-52 | -8.615850e-47 |
| Msa0058580 | Msa0810760 | 0.810871 | 9.292796e-51 | -8.615850e-47 |
| Msa0064110 | Msa0810760 | 0.807371 | 5.221810e-50 | -8.615850e-47 |
| Msa0076700 | Msa0810760 | 0.811472 | 6.882374e-51 | -8.615850e-47 |
| Msa0077180 | Msa0810760 | 0.806433 | 8.245600e-50 | -8.615850e-47 |
| Msa0077450 | Msa0810760 | 0.812802 | 3.530263e-51 | -8.615850e-47 |
| Msa0084720 | Msa0810760 | 0.807257 | 5.522221e-50 | -8.615850e-47 |
| Msa0085720 | Msa0810760 | 0.824274 | 8.820289e-54 | -8.615850e-47 |
| Msa0101020 | Msa0810760 | 0.817719 | 2.849992e-52 | -8.615850e-47 |
| Msa0613460 | Msa0810760 | 0.822242 | 2.630891e-53 | -8.615850e-47 |
| Msa0622600 | Msa0810760 | 0.820786 | 5.706547e-53 | -8.615850e-47 |
| Msa0626990 | Msa0810760 | 0.828653 | 7.976321e-55 | -8.615850e-47 |
| Msa0627350 | Msa0810760 | 0.827863 | 1.236458e-54 | -8.615850e-47 |
| Msa0653440 | Msa0810760 | 0.819312 | 1.240617e-52 | -8.615850e-47 |
| Msa0679550 | Msa0810760 | 0.815013 | 1.148733e-51 | -8.615850e-47 |
| Msa0691050 | Msa0810760 | 0.806812 | 6.857943e-50 | -8.615850e-47 |
| Msa0695870 | Msa0810760 | 0.811958 | 5.395459e-51 | -8.615850e-47 |
| Msa0696410 | Msa0810760 | 0.808918 | 2.445876e-50 | -8.615850e-47 |
| Msa0713240 | Msa0810760 | 0.812223 | 4.722348e-51 | -8.615850e-47 |
| Msa0724950 | Msa0810760 | 0.825654 | 4.167244e-54 | -8.615850e-47 |
| Msa0735160 | Msa0810760 | 0.893055 | 8.970363e-75 | -8.615850e-47 |
| Msa0755070 | Msa0810760 | 0.836047 | 1.176566e-56 | -8.615850e-47 |
| Msa0763080 | Msa0810760 | 0.813542 | 2.428210e-51 | -8.615850e-47 |
| Msa0773310 | Msa0810760 | 0.944278 | 2.615449e-103 | -8.615850e-47 |
| Msa0780280 | Msa0810760 | 0.801478 | 8.834157e-49 | -8.615850e-47 |
| Msa0796960 | Msa0810760 | 0.802093 | 6.608302e-49 | -8.615850e-47 |
| Msa0800770 | Msa0810760 | 0.829037 | 6.441180e-55 | -8.615850e-47 |
| Msa0809740 | Msa0810760 | 0.807776 | 4.283782e-50 | -8.615850e-47 |
| Msa0810760 | Msa0818110 | 0.824071 | 9.843702e-54 | -8.615850e-47 |
| Msa0810760 | Msa0827470 | 0.805167 | 1.521084e-49 | -8.615850e-47 |
| Msa0810760 | Msa0834440 | 0.845520 | 3.859158e-59 | -8.615850e-47 |
| Msa0810760 | Msa0838930 | 0.834051 | 3.748679e-56 | -8.615850e-47 |
| Msa0810760 | Msa0845070 | 0.835379 | 1.737078e-56 | -8.615850e-47 |
| Msa0810760 | Msa0874630 | 0.857642 | 1.420696e-62 | -8.615850e-47 |
| Msa0810760 | Msa0881160 | 0.818850 | 1.580505e-52 | -8.615850e-47 |
| Msa0810760 | Msa0921570 | 0.807591 | 4.690209e-50 | -8.615850e-47 |
| Msa0810760 | Msa0930820 | 0.822358 | 2.471996e-53 | -8.615850e-47 |
| Msa0810760 | Msa0939120 | 0.825965 | 3.514299e-54 | -8.615850e-47 |
| Msa0810760 | Msa0968150 | 0.808412 | 3.137399e-50 | -8.615850e-47 |
| Msa0810760 | Msa0994740 | 0.860905 | 1.490496e-63 | -8.615850e-47 |
| Msa0810760 | Msa1006850 | 0.816263 | 6.050684e-52 | -8.615850e-47 |
| Msa0810760 | Msa1021510 | 0.833360 | 5.576435e-56 | -8.615850e-47 |
| Msa0810760 | Msa1031820 | 0.812732 | 3.656193e-51 | -8.615850e-47 |
| Msa0810760 | Msa1084260 | 0.809124 | 2.209951e-50 | -8.615850e-47 |
| Msa0810760 | Msa1093480 | 0.802716 | 4.916880e-49 | -8.615850e-47 |
| Msa0810760 | Msa1105500 | 0.825145 | 5.499106e-54 | -8.615850e-47 |
| Msa0810760 | Msa1115280 | 0.821993 | 3.005008e-53 | -8.615850e-47 |
| Msa0810760 | Msa1118760 | 0.828315 | 9.623209e-55 | -8.615850e-47 |
| Msa0810760 | Msa1133570 | 0.824050 | 9.958517e-54 | -8.615850e-47 |
| Msa0810760 | Msa1135880 | 0.836039 | 1.181921e-56 | -8.615850e-47 |
| Msa0810760 | Msa1152210 | 0.810320 | 1.222109e-50 | -8.615850e-47 |
| Msa0810760 | Msa1158660 | 0.823181 | 1.590155e-53 | -8.615850e-47 |
| Msa0810760 | Msa1171730 | 0.812916 | 3.332970e-51 | -8.615850e-47 |
| Msa0810760 | Msa1182130 | 0.838288 | 3.142712e-57 | -8.615850e-47 |
| Msa0810760 | Msa1205390 | 0.833809 | 4.307832e-56 | -8.615850e-47 |
| Msa0810760 | Msa1222280 | 0.833282 | 5.832005e-56 | -8.615850e-47 |
| Msa0810760 | Msa1247030 | 0.830831 | 2.353469e-55 | -8.615850e-47 |
| Msa0810760 | Msa1250310 | 0.825282 | 5.103108e-54 | -8.615850e-47 |
| Msa0810760 | Msa1262990 | -0.807802 | 4.231137e-50 | -8.615850e-47 |
| Msa0810760 | Msa1264860 | -0.806698 | 7.248935e-50 | -8.615850e-47 |
| Msa0810760 | Msa1287680 | 0.806104 | 9.672192e-50 | -8.615850e-47 |
| Msa0810760 | Msa1288450 | 0.847529 | 1.091596e-59 | -8.615850e-47 |
| Msa0810760 | Msa1297310 | 0.855360 | 6.645490e-62 | -8.615850e-47 |
| Msa0810760 | Msa1307550 | 0.821806 | 3.318710e-53 | -8.615850e-47 |
| Msa0810760 | Msa1311250 | 0.809431 | 1.898670e-50 | -8.615850e-47 |
| Msa0810760 | Msa1311340 | 0.805628 | 1.218045e-49 | -8.615850e-47 |
| Msa0810760 | Msa1314770 | 0.800627 | 1.318902e-48 | -8.615850e-47 |
| Msa0810760 | Msa1319820 | 0.805563 | 1.256625e-49 | -8.615850e-47 |
| Msa0810760 | Msa1352540 | -0.815539 | 8.778553e-52 | -8.615850e-47 |
| Msa0810760 | Msa1360240 | 0.806314 | 8.735966e-50 | -8.615850e-47 |
| Msa0810760 | Msa1366300 | 0.813307 | 2.735589e-51 | -8.615850e-47 |
| Msa0810760 | Msa1372150 | 0.819864 | 9.284093e-53 | -8.615850e-47 |
| Msa0810760 | Msa1379850 | 0.839088 | 1.953405e-57 | -8.615850e-47 |
| Msa0810760 | Msa1385020 | 0.853563 | 2.199713e-61 | -8.615850e-47 |
| Msa0810760 | Msa1397260 | 0.834425 | 3.020525e-56 | -8.615850e-47 |
| Msa0810760 | Msa1400070 | 0.820287 | 7.427971e-53 | -8.615850e-47 |
| Msa0810760 | Msa1401140 | 0.834929 | 2.255890e-56 | -8.615850e-47 |
| Msa0810760 | Msa1404670 | 0.804987 | 1.658935e-49 | -8.615850e-47 |
| Msa0810760 | Msa1407650 | 0.861243 | 1.176113e-63 | -8.615850e-47 |
| Msa0810760 | Msa1433220 | 0.839284 | 1.737202e-57 | -8.615850e-47 |
| Msa0810760 | Msa1435400 | 0.828291 | 9.755349e-55 | -8.615850e-47 |
| Msa0810760 | Msa1440940 | 0.802558 | 5.300242e-49 | -8.615850e-47 |
| Msa0810760 | Msa1445220 | 0.822919 | 1.830965e-53 | -8.615850e-47 |
| Msa0810760 | Msa1455390 | 0.804211 | 2.408204e-49 | -8.615850e-47 |
| Msa0810760 | Msa1458510 | 0.804838 | 1.782476e-49 | -8.615850e-47 |
| Msa0124550 | Msa0810760 | 0.822128 | 2.794992e-53 | -8.615850e-47 |
| Msa0169820 | Msa0810760 | 0.830885 | 2.281870e-55 | -8.615850e-47 |
| Msa0175050 | Msa0810760 | 0.817310 | 3.523833e-52 | -8.615850e-47 |
| Msa0178510 | Msa0810760 | 0.825320 | 4.999342e-54 | -8.615850e-47 |
| Msa0188050 | Msa0810760 | 0.853553 | 2.214030e-61 | -8.615850e-47 |
| Msa0193540 | Msa0810760 | 0.802741 | 4.858371e-49 | -8.615850e-47 |
| Msa0365490 | Msa0810760 | 0.803522 | 3.349366e-49 | -8.615850e-47 |
| Msa0388030 | Msa0810760 | -0.838501 | 2.769463e-57 | -8.615850e-47 |
| Msa0422500 | Msa0810760 | 0.804499 | 2.098299e-49 | -8.615850e-47 |
| Msa0429090 | Msa0810760 | 0.814130 | 1.801739e-51 | -8.615850e-47 |
| Msa0436370 | Msa0810760 | 0.841510 | 4.548151e-58 | -8.615850e-47 |
| Msa0445280 | Msa0810760 | 0.805144 | 1.538178e-49 | -8.615850e-47 |
| Msa0450350 | Msa0810760 | 0.812880 | 3.393944e-51 | -8.615850e-47 |
| Msa0475500 | Msa0810760 | 0.802400 | 5.713106e-49 | -8.615850e-47 |
| Msa0480600 | Msa0810760 | 0.806399 | 8.381827e-50 | -8.615850e-47 |
| Msa0239690 | Msa0810760 | 0.852073 | 5.862361e-61 | -8.615850e-47 |
| Msa0266240 | Msa0810760 | 0.830307 | 3.161493e-55 | -8.615850e-47 |
| Msa0277790 | Msa0810760 | 0.800413 | 1.458308e-48 | -8.615850e-47 |
| Msa0278900 | Msa0810760 | 0.809979 | 1.447601e-50 | -8.615850e-47 |
| Msa0322680 | Msa0810760 | 0.813745 | 2.191089e-51 | -8.615850e-47 |
| Msa0342070 | Msa0810760 | 0.855405 | 6.449190e-62 | -8.615850e-47 |
| Msa0511250 | Msa0810760 | 0.800376 | 1.483939e-48 | -8.615850e-47 |
| Msa0527980 | Msa0810760 | -0.800645 | 1.308027e-48 | -8.615850e-47 |
| Msa0530650 | Msa0810760 | 0.827565 | 1.458713e-54 | -8.615850e-47 |
| Msa0572480 | Msa0810760 | 0.835069 | 2.079805e-56 | -8.615850e-47 |
| Msa0573040 | Msa0810760 | 0.816223 | 6.176160e-52 | -8.615850e-47 |
| Msa0587190 | Msa0810760 | 0.819849 | 9.356190e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810760 | MtrunA17_Chr5g0427021 | 95.361 | 194 | 2 | 2 | 1 | 193 | 1 | 188 | 1.18e-132 | 369 |
| Msa0810760 | MtrunA17_Chr7g0231881 | 46.970 | 66 | 33 | 1 | 14 | 79 | 5 | 68 | 8.64e-14 | 65.1 |
| Msa0810760 | MtrunA17_Chr8g0334651 | 45.614 | 57 | 31 | 0 | 17 | 73 | 8 | 64 | 4.30e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810760 | AT1G02070.1 | 55.102 | 49 | 21 | 1 | 17 | 64 | 5 | 53 | 1.15e-11 | 60.1 |
Find 28 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTTCTGATGGTGATTT+TGG | 0.180402 | 5_3:-39627846 | None:intergenic |
| TTTGGTTTCTTCATTGGTTT+TGG | 0.200009 | 5_3:-39627828 | None:intergenic |
| GATGAAGAATTTGAAGAGTT+TGG | 0.223033 | 5_3:-39627693 | None:intergenic |
| ACCTGTGTTGAGATCGGATT+TGG | 0.307776 | 5_3:-39627223 | None:intergenic |
| CATTGAGAGGTGAGAGGGAG+AGG | 0.322912 | 5_3:-39627076 | None:intergenic |
| CTTATTCCTGAAAACTTGTT+TGG | 0.327849 | 5_3:-39628012 | None:intergenic |
| AAAAGTAGTAATAATAATAT+TGG | 0.354978 | 5_3:+39627984 | Msa0810760:CDS |
| CGAGTTGAAACTAAAATAGA+TGG | 0.362041 | 5_3:-39627894 | None:intergenic |
| CACATGCAACACTCTGTCTT+TGG | 0.364915 | 5_3:-39627155 | None:intergenic |
| TGTTGCATGTGTGGGGATCT+TGG | 0.374832 | 5_3:+39627167 | Msa0810760:CDS |
| AATCATCACAAACGGTGCTT+TGG | 0.403206 | 5_3:+39627923 | Msa0810760:CDS |
| ATTGAGAGGTGAGAGGGAGA+GGG | 0.479847 | 5_3:-39627075 | None:intergenic |
| CGCAAAAGAATCATCACAAA+CGG | 0.503705 | 5_3:+39627915 | Msa0810760:CDS |
| CAGAAGAAAGGAGTAATCAA+AGG | 0.511163 | 5_3:+39627780 | Msa0810760:CDS |
| TTAAATACCTGTGTTGAGAT+CGG | 0.514874 | 5_3:-39627229 | None:intergenic |
| GGAGATGTTGATGATGCTAT+TGG | 0.539445 | 5_3:-39627873 | None:intergenic |
| AAAGGAGTAATCAAAGGAAG+TGG | 0.542816 | 5_3:+39627786 | Msa0810760:CDS |
| TTGAAGATAGATGAAGAACT+AGG | 0.558656 | 5_3:-39627036 | None:intergenic |
| AATGAAAGCACAGAAGATGA+AGG | 0.559578 | 5_3:+39627729 | Msa0810760:CDS |
| AGTCTATATCTTGTTTAACT+CGG | 0.560190 | 5_3:+39626959 | Msa0810760:five_prime_UTR |
| CAGCAAAACATGACAAGCAA+AGG | 0.581246 | 5_3:+39627110 | Msa0810760:exon |
| AAGACAGAGTGTTGCATGTG+TGG | 0.591608 | 5_3:+39627158 | Msa0810760:CDS |
| GATAGATGAAGAACTAGGAG+AGG | 0.593712 | 5_3:-39627031 | None:intergenic |
| GTGCTTTGGAAGAGAAGTTG+AGG | 0.598720 | 5_3:+39627937 | Msa0810760:CDS |
| AGACAGAGTGTTGCATGTGT+GGG | 0.608298 | 5_3:+39627159 | Msa0810760:CDS |
| GCCAAATCCGATCTCAACAC+AGG | 0.610494 | 5_3:+39627222 | Msa0810760:CDS |
| GACAGAGTGTTGCATGTGTG+GGG | 0.680628 | 5_3:+39627160 | Msa0810760:CDS |
| TTGGTGCTTGAGTCAGAACG+AGG | 0.698443 | 5_3:+39627665 | Msa0810760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAAAGATTAA+GGG | - | chr5_3:39627275-39627294 | None:intergenic | 10.0% |
| !! | TTTCATTAAAAAAAAGATTA+AGG | - | chr5_3:39627276-39627295 | None:intergenic | 10.0% |
| !! | AAAAGTAGTAATAATAATAT+TGG | + | chr5_3:39627984-39628003 | Msa0810760:CDS | 10.0% |
| !! | TTCATTAAAAAAAAGATTAA+GGG | - | chr5_3:39627275-39627294 | None:intergenic | 10.0% |
| !! | TTTCATTAAAAAAAAGATTA+AGG | - | chr5_3:39627276-39627295 | None:intergenic | 10.0% |
| !! | AAAAGTAGTAATAATAATAT+TGG | + | chr5_3:39627984-39628003 | Msa0810760:CDS | 10.0% |
| !!! | TTTTGTTATTTAATTTGTTG+TGG | + | chr5_3:39627552-39627571 | Msa0810760:intron | 15.0% |
| !!! | TTTTGTTATTTAATTTGTTG+TGG | + | chr5_3:39627552-39627571 | Msa0810760:intron | 15.0% |
| !!! | TATTTTTGTAAGGAAATTGA+AGG | + | chr5_3:39627443-39627462 | Msa0810760:intron | 20.0% |
| !! | TTATATATACATCTTTAGTG+AGG | + | chr5_3:39627479-39627498 | Msa0810760:intron | 20.0% |
| !!! | AATTTTTTGGAACATGTAAT+TGG | + | chr5_3:39627646-39627665 | Msa0810760:CDS | 20.0% |
| !!! | AAAAATTGTTTTCAGAAGAA+AGG | + | chr5_3:39627768-39627787 | Msa0810760:CDS | 20.0% |
| !!! | TATTTTTGTAAGGAAATTGA+AGG | + | chr5_3:39627443-39627462 | Msa0810760:intron | 20.0% |
| !! | TTATATATACATCTTTAGTG+AGG | + | chr5_3:39627479-39627498 | Msa0810760:intron | 20.0% |
| !!! | AATTTTTTGGAACATGTAAT+TGG | + | chr5_3:39627646-39627665 | Msa0810760:CDS | 20.0% |
| !!! | AAAAATTGTTTTCAGAAGAA+AGG | + | chr5_3:39627768-39627787 | Msa0810760:CDS | 20.0% |
| !! | AGTCTATATCTTGTTTAACT+CGG | + | chr5_3:39626959-39626978 | Msa0810760:five_prime_UTR | 25.0% |
| !!! | CTCTTTACCTTTTTTATTTG+TGG | + | chr5_3:39627001-39627020 | Msa0810760:five_prime_UTR | 25.0% |
| ! | CTAATGACCACAAATAAAAA+AGG | - | chr5_3:39627011-39627030 | None:intergenic | 25.0% |
| !!! | TGTATCTATTTTTCATTGAG+AGG | - | chr5_3:39627092-39627111 | None:intergenic | 25.0% |
| !!! | GAGTTACATATAGTTTTGAA+AGG | + | chr5_3:39627387-39627406 | Msa0810760:intron | 25.0% |
| !!! | ATTTAATTTGTTGTGGTCTT+TGG | + | chr5_3:39627559-39627578 | Msa0810760:intron | 25.0% |
| !! | TACCTACAAAATTTTCATGA+AGG | - | chr5_3:39627600-39627619 | None:intergenic | 25.0% |
| !!! | TATCCAACAACAGAATTTTT+TGG | + | chr5_3:39627633-39627652 | Msa0810760:CDS | 25.0% |
| !!! | TAGATGAAGTTTCAAGTTAA+CGG | + | chr5_3:39628054-39628073 | Msa0810760:CDS | 25.0% |
| !! | AGTCTATATCTTGTTTAACT+CGG | + | chr5_3:39626959-39626978 | Msa0810760:five_prime_UTR | 25.0% |
| !!! | CTCTTTACCTTTTTTATTTG+TGG | + | chr5_3:39627001-39627020 | Msa0810760:five_prime_UTR | 25.0% |
| ! | CTAATGACCACAAATAAAAA+AGG | - | chr5_3:39627011-39627030 | None:intergenic | 25.0% |
| !!! | TGTATCTATTTTTCATTGAG+AGG | - | chr5_3:39627092-39627111 | None:intergenic | 25.0% |
| !!! | GAGTTACATATAGTTTTGAA+AGG | + | chr5_3:39627387-39627406 | Msa0810760:intron | 25.0% |
| !!! | ATTTAATTTGTTGTGGTCTT+TGG | + | chr5_3:39627559-39627578 | Msa0810760:intron | 25.0% |
| !! | TACCTACAAAATTTTCATGA+AGG | - | chr5_3:39627600-39627619 | None:intergenic | 25.0% |
| !!! | TATCCAACAACAGAATTTTT+TGG | + | chr5_3:39627633-39627652 | Msa0810760:CDS | 25.0% |
| TTGAAGATAGATGAAGAACT+AGG | - | chr5_3:39627039-39627058 | None:intergenic | 30.0% | |
| ! | AGATTTTGCATAGAAAAAGC+TGG | - | chr5_3:39627202-39627221 | None:intergenic | 30.0% |
| TTAAATACCTGTGTTGAGAT+CGG | - | chr5_3:39627232-39627251 | None:intergenic | 30.0% | |
| ! | CTCCTTCATGAAAATTTTGT+AGG | + | chr5_3:39627595-39627614 | Msa0810760:intron | 30.0% |
| GTTCCAAAAAATTCTGTTGT+TGG | - | chr5_3:39627639-39627658 | None:intergenic | 30.0% | |
| GATGAAGAATTTGAAGAGTT+TGG | - | chr5_3:39627696-39627715 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTCTTCATTGGTTT+TGG | - | chr5_3:39627831-39627850 | None:intergenic | 30.0% |
| ! | CGAGTTGAAACTAAAATAGA+TGG | - | chr5_3:39627897-39627916 | None:intergenic | 30.0% |
| ! | CTTATTCCTGAAAACTTGTT+TGG | - | chr5_3:39628015-39628034 | None:intergenic | 30.0% |
| !! | CAAACAAGTTTTCAGGAATA+AGG | + | chr5_3:39628013-39628032 | Msa0810760:CDS | 30.0% |
| !! | TTTTCAGGAATAAGGTAAGA+AGG | + | chr5_3:39628021-39628040 | Msa0810760:CDS | 30.0% |
| TTGAAGATAGATGAAGAACT+AGG | - | chr5_3:39627039-39627058 | None:intergenic | 30.0% | |
| ! | AGATTTTGCATAGAAAAAGC+TGG | - | chr5_3:39627202-39627221 | None:intergenic | 30.0% |
| TTAAATACCTGTGTTGAGAT+CGG | - | chr5_3:39627232-39627251 | None:intergenic | 30.0% | |
| ! | CTCCTTCATGAAAATTTTGT+AGG | + | chr5_3:39627595-39627614 | Msa0810760:intron | 30.0% |
| GTTCCAAAAAATTCTGTTGT+TGG | - | chr5_3:39627639-39627658 | None:intergenic | 30.0% | |
| GATGAAGAATTTGAAGAGTT+TGG | - | chr5_3:39627696-39627715 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTCTTCATTGGTTT+TGG | - | chr5_3:39627831-39627850 | None:intergenic | 30.0% |
| ! | CGAGTTGAAACTAAAATAGA+TGG | - | chr5_3:39627897-39627916 | None:intergenic | 30.0% |
| ! | CTTATTCCTGAAAACTTGTT+TGG | - | chr5_3:39628015-39628034 | None:intergenic | 30.0% |
| !! | CAAACAAGTTTTCAGGAATA+AGG | + | chr5_3:39628013-39628032 | Msa0810760:CDS | 30.0% |
| !! | TTTTCAGGAATAAGGTAAGA+AGG | + | chr5_3:39628021-39628040 | Msa0810760:CDS | 30.0% |
| !!! | ACTCGGTTTAGTCTTTTTTG+TGG | + | chr5_3:39626976-39626995 | Msa0810760:five_prime_UTR | 35.0% |
| !!! | CTCGGTTTAGTCTTTTTTGT+GGG | + | chr5_3:39626977-39626996 | Msa0810760:five_prime_UTR | 35.0% |
| ! | TTTTTCATTGAGAGGTGAGA+GGG | - | chr5_3:39627084-39627103 | None:intergenic | 35.0% |
| ! | ATTTTTCATTGAGAGGTGAG+AGG | - | chr5_3:39627085-39627104 | None:intergenic | 35.0% |
| ! | AATGAAAGCACAGAAGATGA+AGG | + | chr5_3:39627729-39627748 | Msa0810760:CDS | 35.0% |
| CAGAAGAAAGGAGTAATCAA+AGG | + | chr5_3:39627780-39627799 | Msa0810760:CDS | 35.0% | |
| AAAGGAGTAATCAAAGGAAG+TGG | + | chr5_3:39627786-39627805 | Msa0810760:CDS | 35.0% | |
| !!! | GGTGATTTTGGTTTCTTCAT+TGG | - | chr5_3:39627837-39627856 | None:intergenic | 35.0% |
| !! | TTTGCTTCTGATGGTGATTT+TGG | - | chr5_3:39627849-39627868 | None:intergenic | 35.0% |
| !! | ATTGGTGATTTTGCTTCTGA+TGG | - | chr5_3:39627858-39627877 | None:intergenic | 35.0% |
| CGCAAAAGAATCATCACAAA+CGG | + | chr5_3:39627915-39627934 | Msa0810760:CDS | 35.0% | |
| !!! | ACTCGGTTTAGTCTTTTTTG+TGG | + | chr5_3:39626976-39626995 | Msa0810760:five_prime_UTR | 35.0% |
| !!! | CTCGGTTTAGTCTTTTTTGT+GGG | + | chr5_3:39626977-39626996 | Msa0810760:five_prime_UTR | 35.0% |
| ! | TTTTTCATTGAGAGGTGAGA+GGG | - | chr5_3:39627084-39627103 | None:intergenic | 35.0% |
| ! | ATTTTTCATTGAGAGGTGAG+AGG | - | chr5_3:39627085-39627104 | None:intergenic | 35.0% |
| ! | AATGAAAGCACAGAAGATGA+AGG | + | chr5_3:39627729-39627748 | Msa0810760:CDS | 35.0% |
| CAGAAGAAAGGAGTAATCAA+AGG | + | chr5_3:39627780-39627799 | Msa0810760:CDS | 35.0% | |
| AAAGGAGTAATCAAAGGAAG+TGG | + | chr5_3:39627786-39627805 | Msa0810760:CDS | 35.0% | |
| !!! | GGTGATTTTGGTTTCTTCAT+TGG | - | chr5_3:39627837-39627856 | None:intergenic | 35.0% |
| !! | TTTGCTTCTGATGGTGATTT+TGG | - | chr5_3:39627849-39627868 | None:intergenic | 35.0% |
| !! | ATTGGTGATTTTGCTTCTGA+TGG | - | chr5_3:39627858-39627877 | None:intergenic | 35.0% |
| CGCAAAAGAATCATCACAAA+CGG | + | chr5_3:39627915-39627934 | Msa0810760:CDS | 35.0% | |
| GATAGATGAAGAACTAGGAG+AGG | - | chr5_3:39627034-39627053 | None:intergenic | 40.0% | |
| CAGCAAAACATGACAAGCAA+AGG | + | chr5_3:39627110-39627129 | Msa0810760:exon | 40.0% | |
| !! | GGAGATGTTGATGATGCTAT+TGG | - | chr5_3:39627876-39627895 | None:intergenic | 40.0% |
| AATCATCACAAACGGTGCTT+TGG | + | chr5_3:39627923-39627942 | Msa0810760:CDS | 40.0% | |
| ! | GTGTGACCAAACAAGTTTTC+AGG | + | chr5_3:39628006-39628025 | Msa0810760:CDS | 40.0% |
| GATAGATGAAGAACTAGGAG+AGG | - | chr5_3:39627034-39627053 | None:intergenic | 40.0% | |
| CAGCAAAACATGACAAGCAA+AGG | + | chr5_3:39627110-39627129 | Msa0810760:exon | 40.0% | |
| !! | GGAGATGTTGATGATGCTAT+TGG | - | chr5_3:39627876-39627895 | None:intergenic | 40.0% |
| AATCATCACAAACGGTGCTT+TGG | + | chr5_3:39627923-39627942 | Msa0810760:CDS | 40.0% | |
| ! | GTGTGACCAAACAAGTTTTC+AGG | + | chr5_3:39628006-39628025 | Msa0810760:CDS | 40.0% |
| CACATGCAACACTCTGTCTT+TGG | - | chr5_3:39627158-39627177 | None:intergenic | 45.0% | |
| !! | AAGACAGAGTGTTGCATGTG+TGG | + | chr5_3:39627158-39627177 | Msa0810760:CDS | 45.0% |
| !! | AGACAGAGTGTTGCATGTGT+GGG | + | chr5_3:39627159-39627178 | Msa0810760:CDS | 45.0% |
| ACCTGTGTTGAGATCGGATT+TGG | - | chr5_3:39627226-39627245 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGAAGAGAAGTTG+AGG | + | chr5_3:39627937-39627956 | Msa0810760:CDS | 45.0% |
| CACATGCAACACTCTGTCTT+TGG | - | chr5_3:39627158-39627177 | None:intergenic | 45.0% | |
| !! | AAGACAGAGTGTTGCATGTG+TGG | + | chr5_3:39627158-39627177 | Msa0810760:CDS | 45.0% |
| !! | AGACAGAGTGTTGCATGTGT+GGG | + | chr5_3:39627159-39627178 | Msa0810760:CDS | 45.0% |
| ACCTGTGTTGAGATCGGATT+TGG | - | chr5_3:39627226-39627245 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGAAGAGAAGTTG+AGG | + | chr5_3:39627937-39627956 | Msa0810760:CDS | 45.0% |
| !!! | ATAAATTTTATATTTTTGTA+AGG | + | chr5_3:39627433-39627452 | Msa0810760:intron | 5.0% |
| !!! | ATAAATTTTATATTTTTGTA+AGG | + | chr5_3:39627433-39627452 | Msa0810760:intron | 5.0% |
| ATTGAGAGGTGAGAGGGAGA+GGG | - | chr5_3:39627078-39627097 | None:intergenic | 50.0% | |
| !! | GACAGAGTGTTGCATGTGTG+GGG | + | chr5_3:39627160-39627179 | Msa0810760:CDS | 50.0% |
| TGTTGCATGTGTGGGGATCT+TGG | + | chr5_3:39627167-39627186 | Msa0810760:CDS | 50.0% | |
| GCCAAATCCGATCTCAACAC+AGG | + | chr5_3:39627222-39627241 | Msa0810760:CDS | 50.0% | |
| ! | TTGGTGCTTGAGTCAGAACG+AGG | + | chr5_3:39627665-39627684 | Msa0810760:CDS | 50.0% |
| ATTGAGAGGTGAGAGGGAGA+GGG | - | chr5_3:39627078-39627097 | None:intergenic | 50.0% | |
| !! | GACAGAGTGTTGCATGTGTG+GGG | + | chr5_3:39627160-39627179 | Msa0810760:CDS | 50.0% |
| TGTTGCATGTGTGGGGATCT+TGG | + | chr5_3:39627167-39627186 | Msa0810760:CDS | 50.0% | |
| GCCAAATCCGATCTCAACAC+AGG | + | chr5_3:39627222-39627241 | Msa0810760:CDS | 50.0% | |
| ! | TTGGTGCTTGAGTCAGAACG+AGG | + | chr5_3:39627665-39627684 | Msa0810760:CDS | 50.0% |
| CATTGAGAGGTGAGAGGGAG+AGG | - | chr5_3:39627079-39627098 | None:intergenic | 55.0% | |
| CATTGAGAGGTGAGAGGGAG+AGG | - | chr5_3:39627079-39627098 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 39626947 | 39628073 | 39626947 | ID=Msa0810760;Name=Msa0810760 |
| chr5_3 | mRNA | 39626947 | 39628073 | 39626947 | ID=Msa0810760-mRNA-1;Parent=Msa0810760;Name=Msa0810760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=172|1|0.5|1|1|1|2|0|193 |
| chr5_3 | exon | 39626947 | 39627243 | 39626947 | ID=Msa0810760-mRNA-1:exon:11998;Parent=Msa0810760-mRNA-1 |
| chr5_3 | exon | 39627617 | 39628073 | 39627617 | ID=Msa0810760-mRNA-1:exon:11999;Parent=Msa0810760-mRNA-1 |
| chr5_3 | five_prime_UTR | 39626947 | 39627118 | 39626947 | ID=Msa0810760-mRNA-1:five_prime_utr;Parent=Msa0810760-mRNA-1 |
| chr5_3 | CDS | 39627119 | 39627243 | 39627119 | ID=Msa0810760-mRNA-1:cds;Parent=Msa0810760-mRNA-1 |
| chr5_3 | CDS | 39627617 | 39628073 | 39627617 | ID=Msa0810760-mRNA-1:cds;Parent=Msa0810760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
