AlfalfaGEDB | Msa0810760

M. sativa cultivar zhongmu-4 / Msa0810760

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810760	XP_003615222.1	95.361	194	2	2	1	193	1	188	1.28e-128	369

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810760	G7KBE5	95.361	194	2	2	1	193	1	188	6.13e-129	369

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003560	Msa0810760	0.802321	5.930410e-49	-8.615850e-47
Msa0029850	Msa0810760	0.809712	1.652315e-50	-8.615850e-47
Msa0042550	Msa0810760	0.824002	1.021965e-53	-8.615850e-47
Msa0055070	Msa0810760	0.815459	9.145822e-52	-8.615850e-47
Msa0058580	Msa0810760	0.810871	9.292796e-51	-8.615850e-47
Msa0064110	Msa0810760	0.807371	5.221810e-50	-8.615850e-47
Msa0076700	Msa0810760	0.811472	6.882374e-51	-8.615850e-47
Msa0077180	Msa0810760	0.806433	8.245600e-50	-8.615850e-47
Msa0077450	Msa0810760	0.812802	3.530263e-51	-8.615850e-47
Msa0084720	Msa0810760	0.807257	5.522221e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810760	MtrunA17_Chr5g0427021	95.361	194	2	2	1	193	1	188	1.18e-132	369
Msa0810760	MtrunA17_Chr7g0231881	46.970	66	33	1	14	79	5	68	8.64e-14	65.1
Msa0810760	MtrunA17_Chr8g0334651	45.614	57	31	0	17	73	8	64	4.30e-13	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0810760	AT1G02070.1	55.102	49	21	1	17	64	5	53	1.15e-11	60.1

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Find 28 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGTAATAATAATAT+TGG	0.354978	5_3:+39627984	Msa0810760:CDS
AAAGGAGTAATCAAAGGAAG+TGG	0.542816	5_3:+39627786	Msa0810760:CDS
AAGACAGAGTGTTGCATGTG+TGG	0.591608	5_3:+39627158	Msa0810760:CDS
AATCATCACAAACGGTGCTT+TGG	0.403206	5_3:+39627923	Msa0810760:CDS
AATGAAAGCACAGAAGATGA+AGG	0.559578	5_3:+39627729	Msa0810760:CDS
ACCTGTGTTGAGATCGGATT+TGG	0.307776	5_3:-39627223	None:intergenic
AGACAGAGTGTTGCATGTGT+GGG	0.608298	5_3:+39627159	Msa0810760:CDS
AGTCTATATCTTGTTTAACT+CGG	0.560190	5_3:+39626959	Msa0810760:five_prime_UTR
ATTGAGAGGTGAGAGGGAGA+GGG	0.479847	5_3:-39627075	None:intergenic
CACATGCAACACTCTGTCTT+TGG	0.364915	5_3:-39627155	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGATAGATGAAGAACT+AGG	-	chr5_3:39627039-39627058	None:intergenic	30.0%
TTAAATACCTGTGTTGAGAT+CGG	-	chr5_3:39627232-39627251	None:intergenic	30.0%
GTTCCAAAAAATTCTGTTGT+TGG	-	chr5_3:39627639-39627658	None:intergenic	30.0%
GATGAAGAATTTGAAGAGTT+TGG	-	chr5_3:39627696-39627715	None:intergenic	30.0%
TTGAAGATAGATGAAGAACT+AGG	-	chr5_3:39627039-39627058	None:intergenic	30.0%
TTAAATACCTGTGTTGAGAT+CGG	-	chr5_3:39627232-39627251	None:intergenic	30.0%
GTTCCAAAAAATTCTGTTGT+TGG	-	chr5_3:39627639-39627658	None:intergenic	30.0%
GATGAAGAATTTGAAGAGTT+TGG	-	chr5_3:39627696-39627715	None:intergenic	30.0%
CAGAAGAAAGGAGTAATCAA+AGG	+	chr5_3:39627780-39627799	Msa0810760:CDS	35.0%
AAAGGAGTAATCAAAGGAAG+TGG	+	chr5_3:39627786-39627805	Msa0810760:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	39626947	39628073	39626947	ID=Msa0810760;Name=Msa0810760
chr5_3	mRNA	39626947	39628073	39626947	ID=Msa0810760-mRNA-1;Parent=Msa0810760;Name=Msa0810760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=172\|1\|0.5\|1\|1\|1\|2\|0\|193
chr5_3	exon	39626947	39627243	39626947	ID=Msa0810760-mRNA-1:exon:11998;Parent=Msa0810760-mRNA-1
chr5_3	exon	39627617	39628073	39627617	ID=Msa0810760-mRNA-1:exon:11999;Parent=Msa0810760-mRNA-1
chr5_3	five_prime_UTR	39626947	39627118	39626947	ID=Msa0810760-mRNA-1:five_prime_utr;Parent=Msa0810760-mRNA-1
chr5_3	CDS	39627119	39627243	39627119	ID=Msa0810760-mRNA-1:cds;Parent=Msa0810760-mRNA-1
chr5_3	CDS	39627617	39628073	39627617	ID=Msa0810760-mRNA-1:cds;Parent=Msa0810760-mRNA-1

Gene Sequence

>Msa0810760

ATGACAAGCAAAGGAACAAACTCTGCAGAACAACTACCAAAGACAGAGTGTTGCATGTGTGGGGATCTTGGTTTCTCTGACCAGCTTTTTCTATGCAAAATCTGCCAAATCCGATCTCAACACAGGTATTGTAGTAACATATATCCAACAACAGAATTTTTTGGAACATGTAATTGGTGCTTGAGTCAGAACGAGGATTCACCAAACTCTTCAAATTCTTCATCTTCTTACAAGAAAAATGAAAGCACAGAAGATGAAGGAAAGAACAAACAAATAAAAAATTGTTTTCAGAAGAAAGGAGTAATCAAAGGAAGTGGTGTTTATCGTCTTCAACTTCCAAAACCAATGAAGAAACCAAAATCACCATCAGAAGCAAAATCACCAATAGCATCATCAACATCTCCATCTATTTTAGTTTCAACTCGCAAAAGAATCATCACAAACGGTGCTTTGGAAGAGAAGTTGAGGAGAACAAGATCAGAAAACATTATAAAAAGTAGTAATAATAATATTGGTGTGACCAAACAAGTTTTCAGGAATAAGGTAAGAAGGTATAAGCTTTTAGATGAAGTTTCAAGTTAA

Protein sequence

>Msa0810760

MTSKGTNSAEQLPKTECCMCGDLGFSDQLFLCKICQIRSQHRYCSNIYPTTEFFGTCNWCLSQNEDSPNSSNSSSSYKKNESTEDEGKNKQIKNCFQKKGVIKGSGVYRLQLPKPMKKPKSPSEAKSPIASSTSPSILVSTRKRIITNGALEEKLRRTRSENIIKSSNNNIGVTKQVFRNKVRRYKLLDEVSS*