Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994740 | XP_003619827.1 | 94.915 | 177 | 9 | 0 | 1 | 177 | 1 | 177 | 7.10e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994740 | sp|Q9LVH4|CAR4_ARATH | 65.537 | 177 | 61 | 0 | 1 | 177 | 1 | 177 | 7.92e-84 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994740 | G7KPS8 | 94.915 | 177 | 9 | 0 | 1 | 177 | 1 | 177 | 3.39e-123 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658570 | Msa0994740 | 0.808893 | 2.476530e-50 | -8.615850e-47 |
| Msa0708050 | Msa0994740 | -0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0735160 | Msa0994740 | 0.811259 | 7.654539e-51 | -8.615850e-47 |
| Msa0765010 | Msa0994740 | 0.803270 | 3.776594e-49 | -8.615850e-47 |
| Msa0773310 | Msa0994740 | 0.838380 | 2.976786e-57 | -8.615850e-47 |
| Msa0809740 | Msa0994740 | 0.802343 | 5.868501e-49 | -8.615850e-47 |
| Msa0810760 | Msa0994740 | 0.860905 | 1.490496e-63 | -8.615850e-47 |
| Msa0834440 | Msa0994740 | 0.807576 | 4.725120e-50 | -8.615850e-47 |
| Msa0388030 | Msa0994740 | -0.843336 | 1.491712e-58 | -8.615850e-47 |
| Msa0422500 | Msa0994740 | 0.810194 | 1.301483e-50 | -8.615850e-47 |
| Msa0436370 | Msa0994740 | 0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa0450350 | Msa0994740 | 0.812065 | 5.113306e-51 | -8.615850e-47 |
| Msa0464900 | Msa0994740 | 0.802241 | 6.158449e-49 | -8.615850e-47 |
| Msa0994740 | Msa1006850 | 0.818136 | 2.294302e-52 | -8.615850e-47 |
| Msa0994740 | Msa1105500 | 0.806413 | 8.327696e-50 | -8.615850e-47 |
| Msa0994740 | Msa1118760 | 0.815173 | 1.058522e-51 | -8.615850e-47 |
| Msa0994740 | Msa1135880 | 0.823804 | 1.136844e-53 | -8.615850e-47 |
| Msa0994740 | Msa1171730 | 0.820359 | 7.150092e-53 | -8.615850e-47 |
| Msa0994740 | Msa1199070 | 0.801425 | 9.058475e-49 | -8.615850e-47 |
| Msa0994740 | Msa1262990 | -0.813347 | 2.680389e-51 | -8.615850e-47 |
| Msa0994740 | Msa1307550 | 0.802257 | 6.111567e-49 | -8.615850e-47 |
| Msa0994740 | Msa1340040 | -0.802119 | 6.525399e-49 | -8.615850e-47 |
| Msa0994740 | Msa1376890 | 0.816881 | 4.399162e-52 | -8.615850e-47 |
| Msa0994740 | Msa1379850 | 0.803399 | 3.551844e-49 | -8.615850e-47 |
| Msa0994740 | Msa1407650 | 0.821472 | 3.965265e-53 | -8.615850e-47 |
| Msa0994740 | Msa1416040 | -0.807953 | 3.929082e-50 | -8.615850e-47 |
| Msa0994740 | Msa1435400 | 0.800687 | 1.282134e-48 | -8.615850e-47 |
| Msa0511250 | Msa0994740 | 0.803879 | 2.824192e-49 | -8.615850e-47 |
| Msa0517490 | Msa0994740 | 0.800205 | 1.607502e-48 | -8.615850e-47 |
| Msa0567020 | Msa0994740 | 0.808309 | 3.298986e-50 | -8.615850e-47 |
| Msa0572480 | Msa0994740 | 0.802216 | 6.232402e-49 | -8.615850e-47 |
| Msa0921570 | Msa0994740 | 0.951464 | 1.931969e-109 | -8.615850e-47 |
| Msa0930820 | Msa0994740 | 0.802727 | 4.889589e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994740 | MtrunA17_Chr6g0478401 | 94.915 | 177 | 9 | 0 | 1 | 177 | 1 | 177 | 6.53e-127 | 353 |
| Msa0994740 | MtrunA17_Chr8g0393081 | 72.353 | 170 | 47 | 0 | 8 | 177 | 12 | 181 | 9.21e-93 | 267 |
| Msa0994740 | MtrunA17_Chr3g0111361 | 66.871 | 163 | 54 | 0 | 13 | 175 | 1 | 163 | 1.08e-81 | 239 |
| Msa0994740 | MtrunA17_Chr2g0280981 | 64.417 | 163 | 58 | 0 | 15 | 177 | 2 | 164 | 1.56e-77 | 228 |
| Msa0994740 | MtrunA17_Chr1g0160811 | 56.098 | 164 | 71 | 1 | 15 | 177 | 4 | 167 | 8.09e-66 | 199 |
| Msa0994740 | MtrunA17_Chr4g0043861 | 49.390 | 164 | 83 | 0 | 13 | 176 | 1 | 164 | 1.17e-56 | 176 |
| Msa0994740 | MtrunA17_Chr8g0380381 | 43.750 | 160 | 89 | 1 | 13 | 171 | 85 | 244 | 2.81e-43 | 144 |
| Msa0994740 | MtrunA17_Chr2g0292461 | 41.765 | 170 | 98 | 1 | 3 | 171 | 158 | 327 | 7.99e-40 | 137 |
| Msa0994740 | MtrunA17_Chr8g0352751 | 40.625 | 160 | 94 | 1 | 13 | 171 | 1 | 160 | 2.52e-35 | 121 |
| Msa0994740 | MtrunA17_Chr2g0290631 | 38.217 | 157 | 95 | 2 | 13 | 167 | 1 | 157 | 7.64e-35 | 120 |
| Msa0994740 | MtrunA17_Chr3g0083541 | 38.125 | 160 | 98 | 1 | 13 | 171 | 239 | 398 | 1.44e-30 | 114 |
| Msa0994740 | MtrunA17_Chr1g0156811 | 40.449 | 89 | 48 | 3 | 13 | 96 | 255 | 343 | 5.59e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994740 | AT3G17980.1 | 65.537 | 177 | 61 | 0 | 1 | 177 | 1 | 177 | 8.05e-85 | 248 |
| Msa0994740 | AT1G73580.1 | 68.862 | 167 | 52 | 0 | 11 | 177 | 2 | 168 | 3.52e-81 | 238 |
| Msa0994740 | AT1G48590.4 | 66.272 | 169 | 56 | 1 | 9 | 177 | 2 | 169 | 3.92e-80 | 235 |
| Msa0994740 | AT1G48590.1 | 66.272 | 169 | 56 | 1 | 9 | 177 | 2 | 169 | 3.92e-80 | 235 |
| Msa0994740 | AT1G48590.2 | 66.272 | 169 | 56 | 1 | 9 | 177 | 33 | 200 | 8.47e-80 | 236 |
| Msa0994740 | AT5G37740.1 | 61.310 | 168 | 62 | 1 | 13 | 177 | 1 | 168 | 1.19e-73 | 219 |
| Msa0994740 | AT1G70810.1 | 60.606 | 165 | 65 | 0 | 13 | 177 | 1 | 165 | 7.74e-71 | 212 |
| Msa0994740 | AT5G37740.2 | 57.865 | 178 | 62 | 2 | 13 | 177 | 1 | 178 | 4.36e-70 | 210 |
| Msa0994740 | AT1G66360.1 | 59.756 | 164 | 64 | 1 | 13 | 174 | 1 | 164 | 6.32e-70 | 209 |
| Msa0994740 | AT1G70790.3 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.55e-68 | 206 |
| Msa0994740 | AT1G70790.2 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.55e-68 | 206 |
| Msa0994740 | AT1G70790.1 | 61.350 | 163 | 61 | 1 | 17 | 177 | 6 | 168 | 1.55e-68 | 206 |
| Msa0994740 | AT2G01540.1 | 57.669 | 163 | 67 | 1 | 17 | 177 | 6 | 168 | 1.52e-66 | 201 |
| Msa0994740 | AT1G23140.1 | 57.407 | 162 | 69 | 0 | 13 | 174 | 1 | 162 | 2.11e-65 | 198 |
| Msa0994740 | AT1G70800.1 | 55.758 | 165 | 73 | 0 | 13 | 177 | 10 | 174 | 1.50e-64 | 196 |
| Msa0994740 | AT1G48590.3 | 52.071 | 169 | 48 | 2 | 9 | 177 | 33 | 168 | 2.34e-56 | 175 |
| Msa0994740 | AT1G70790.4 | 59.231 | 130 | 51 | 1 | 50 | 177 | 2 | 131 | 5.86e-50 | 158 |
| Msa0994740 | AT4G05330.2 | 43.125 | 160 | 90 | 1 | 13 | 171 | 140 | 299 | 1.31e-37 | 131 |
| Msa0994740 | AT5G47710.1 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.98e-37 | 127 |
| Msa0994740 | AT5G47710.2 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.98e-37 | 127 |
| Msa0994740 | AT5G47710.3 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.98e-37 | 127 |
| Msa0994740 | AT5G47710.4 | 39.634 | 164 | 97 | 2 | 13 | 174 | 1 | 164 | 1.98e-37 | 127 |
| Msa0994740 | AT4G05330.3 | 43.125 | 160 | 90 | 1 | 13 | 171 | 175 | 334 | 4.83e-37 | 130 |
| Msa0994740 | AT4G05330.1 | 43.125 | 160 | 90 | 1 | 13 | 171 | 175 | 334 | 4.83e-37 | 130 |
| Msa0994740 | AT4G21160.2 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 7.44e-36 | 127 |
| Msa0994740 | AT4G21160.3 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 7.44e-36 | 127 |
| Msa0994740 | AT4G21160.1 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 7.44e-36 | 127 |
| Msa0994740 | AT4G21160.4 | 40.588 | 170 | 97 | 2 | 6 | 171 | 166 | 335 | 7.44e-36 | 127 |
| Msa0994740 | AT3G07940.1 | 42.500 | 160 | 91 | 1 | 13 | 171 | 224 | 383 | 7.01e-35 | 126 |
| Msa0994740 | AT5G04220.1 | 44.706 | 85 | 42 | 3 | 17 | 96 | 38 | 122 | 3.21e-12 | 63.9 |
| Msa0994740 | AT5G04220.2 | 44.706 | 85 | 42 | 3 | 17 | 96 | 260 | 344 | 4.20e-12 | 63.9 |
| Msa0994740 | AT5G04220.3 | 44.706 | 85 | 42 | 3 | 17 | 96 | 198 | 282 | 4.82e-12 | 63.5 |
| Msa0994740 | AT1G03370.2 | 38.889 | 90 | 48 | 2 | 20 | 102 | 3 | 92 | 1.18e-11 | 62.8 |
| Msa0994740 | AT1G03370.1 | 38.889 | 90 | 48 | 2 | 20 | 102 | 3 | 92 | 1.22e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTAAATTGTGAATTTA+TGG | 0.046309 | 6_4:+69951803 | None:intergenic |
| AATCTTAATTAATTATTATA+TGG | 0.240615 | 6_4:+69951742 | None:intergenic |
| CAATCACTTACCAATGTAAC+TGG | 0.259798 | 6_4:+69950848 | None:intergenic |
| TTATTATGCCTTCAACTATA+TGG | 0.260012 | 6_4:-69949625 | Msa0994740:three_prime_UTR |
| TAATTAAGATTAAGAATAAA+AGG | 0.265011 | 6_4:-69951730 | Msa0994740:five_prime_UTR |
| TTGCACTGGATTGATCTTCC+TGG | 0.299246 | 6_4:-69949684 | Msa0994740:CDS |
| AGAATAAAAGGAAGAAGAAA+TGG | 0.355286 | 6_4:-69951718 | Msa0994740:exon |
| TCTCTGATGGAGAATCTATT+AGG | 0.386056 | 6_4:-69951669 | Msa0994740:CDS |
| TACGGTGCCGTTTGCAAGGC+CGG | 0.395496 | 6_4:+69949839 | None:intergenic |
| ATTGATCTTCCTGGTTCTAA+AGG | 0.412234 | 6_4:-69949675 | Msa0994740:CDS |
| GCAGTCTAAGGATCATATCT+TGG | 0.412690 | 6_4:+69949739 | None:intergenic |
| TACATCTTGATTACAACATA+AGG | 0.417586 | 6_4:+69951582 | None:intergenic |
| ACCAATGTAACTGGGTGATT+AGG | 0.417936 | 6_4:+69950857 | None:intergenic |
| TGGTTGTATCCGCTTGATTA+CGG | 0.424732 | 6_4:+69949821 | None:intergenic |
| ATACATTATACATTACAAAC+TGG | 0.431914 | 6_4:+69949514 | None:intergenic |
| CCACAAAACCATATAGTTGA+AGG | 0.436431 | 6_4:+69949617 | None:intergenic |
| GATCTATAACAGACAGAGTA+AGG | 0.440032 | 6_4:+69950879 | None:intergenic |
| GCAAGGCAGTTGTGCTTGCT+TGG | 0.456659 | 6_4:+69949801 | None:intergenic |
| TGTAATCAAGATGTATAATC+AGG | 0.457131 | 6_4:-69951574 | Msa0994740:intron |
| TTTAGCAAAGATGACAAAAT+GGG | 0.458958 | 6_4:-69949915 | Msa0994740:CDS |
| GCCTTGAGGATGAATGTAAC+CGG | 0.480599 | 6_4:-69949858 | Msa0994740:CDS |
| ATAATAAATACAGCTCTCTT+CGG | 0.487354 | 6_4:+69949779 | None:intergenic |
| AATGTAACCGGCCTTGCAAA+CGG | 0.489187 | 6_4:-69949846 | Msa0994740:CDS |
| TGATTACGGTGCCGTTTGCA+AGG | 0.511473 | 6_4:+69949835 | None:intergenic |
| ACAAAGATGTGTACTATGAA+TGG | 0.513312 | 6_4:+69951886 | None:intergenic |
| AAGTGGAAATCAGTTTGCAC+TGG | 0.519685 | 6_4:-69949698 | Msa0994740:CDS |
| CATCCTCAAGGCTTCTATGT+AGG | 0.521839 | 6_4:+69949869 | None:intergenic |
| AGCTGTATTTATTATAGCAA+TGG | 0.541875 | 6_4:-69949771 | Msa0994740:CDS |
| GCCGGTTACATTCATCCTCA+AGG | 0.552249 | 6_4:+69949857 | None:intergenic |
| TCCTAATCACCCAGTTACAT+TGG | 0.552725 | 6_4:-69950858 | Msa0994740:intron |
| GTGTACTATGAATGGATCAA+TGG | 0.556580 | 6_4:+69951894 | None:intergenic |
| AGAATCTATTAGGCCTTCTG+AGG | 0.559791 | 6_4:-69951659 | Msa0994740:CDS |
| GATTATAAACCTTTAGAACC+AGG | 0.577547 | 6_4:+69949666 | None:intergenic |
| GATCCTTAGACTGCAAAATG+TGG | 0.590504 | 6_4:-69949730 | Msa0994740:CDS |
| CAAGGCTTCTATGTAGGCCG+CGG | 0.594100 | 6_4:+69949875 | None:intergenic |
| AAATGTGGAATGTGGTGAAG+TGG | 0.600672 | 6_4:-69949715 | Msa0994740:CDS |
| TAGTACACATCTTTGTCAGT+GGG | 0.602092 | 6_4:-69951879 | Msa0994740:five_prime_UTR |
| GCTTCACACGAACCCTCAGA+AGG | 0.617469 | 6_4:+69951646 | None:intergenic |
| GTAAGGTCTTCATTCCACTC+AGG | 0.618175 | 6_4:+69950896 | None:intergenic |
| AAAAGAATGTTAATCCTGAG+TGG | 0.623609 | 6_4:-69950910 | Msa0994740:CDS |
| AGATGACAAAATGGGAGATG+CGG | 0.626598 | 6_4:-69949907 | Msa0994740:CDS |
| ATTTATGGAAAGAAAATGAG+AGG | 0.629207 | 6_4:+69951818 | None:intergenic |
| ATAGTACACATCTTTGTCAG+TGG | 0.635539 | 6_4:-69951880 | Msa0994740:five_prime_UTR |
| AAATACAGCTCTCTTCGGCA+AGG | 0.644242 | 6_4:+69949784 | None:intergenic |
| GAATCTATTAGGCCTTCTGA+GGG | 0.645365 | 6_4:-69951658 | Msa0994740:CDS |
| CGGCCTACATAGAAGCCTTG+AGG | 0.646309 | 6_4:-69949872 | Msa0994740:CDS |
| CTGAGGGTTCGTGTGAAGCG+TGG | 0.662794 | 6_4:-69951642 | Msa0994740:CDS |
| TACGAACATCACGAACAGCA+AGG | 0.662931 | 6_4:+69951613 | None:intergenic |
| AATCACTTACCAATGTAACT+GGG | 0.672409 | 6_4:+69950849 | None:intergenic |
| CAAACGGCACCGTAATCAAG+CGG | 0.692308 | 6_4:-69949830 | Msa0994740:CDS |
| AGATGCGGTATTTGACGCCG+CGG | 0.709574 | 6_4:-69949892 | Msa0994740:CDS |
| AGACTGCAAAATGTGGAATG+TGG | 0.721570 | 6_4:-69949723 | Msa0994740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAATTGTGAATTTA+TGG | + | chr6_4:69949580-69949599 | None:intergenic | 10.0% |
| !! | TAATTAAGATTAAGAATAAA+AGG | - | chr6_4:69949650-69949669 | Msa0994740:exon | 10.0% |
| !! | TTTGTTGAAAAAAAATTAAA+GGG | + | chr6_4:69949934-69949953 | None:intergenic | 10.0% |
| !!! | ATTTGTTGAAAAAAAATTAA+AGG | + | chr6_4:69949935-69949954 | None:intergenic | 10.0% |
| !! | GTAAAAAAAAATCAAATAAA+AGG | + | chr6_4:69951133-69951152 | None:intergenic | 10.0% |
| !! | TTGTTGAAAAAAAATTAAAG+GGG | + | chr6_4:69949933-69949952 | None:intergenic | 15.0% |
| !!! | TTTTCATGCTTTTAATATAT+TGG | - | chr6_4:69950101-69950120 | Msa0994740:intron | 15.0% |
| !!! | AAATCAAATTGTTCATTTTA+TGG | + | chr6_4:69951086-69951105 | None:intergenic | 15.0% |
| !!! | TTACAAATATTTGACTTAAT+CGG | + | chr6_4:69951288-69951307 | None:intergenic | 15.0% |
| !!! | CTTTTGATTTATTGAATCAA+GGG | - | chr6_4:69949972-69949991 | Msa0994740:intron | 20.0% |
| !! | AATCAAATAAAAGGTAAAAC+AGG | + | chr6_4:69951124-69951143 | None:intergenic | 20.0% |
| !! | AAATATTTGTAATGATCTGA+CGG | - | chr6_4:69951296-69951315 | Msa0994740:intron | 20.0% |
| !! | TTGAATGAACAAATATTGAT+AGG | + | chr6_4:69951379-69951398 | None:intergenic | 20.0% |
| !! | TATTTGTTCATTCAATGTAT+TGG | - | chr6_4:69951384-69951403 | Msa0994740:intron | 20.0% |
| !! | ATACATTATACATTACAAAC+TGG | + | chr6_4:69951869-69951888 | None:intergenic | 20.0% |
| ! | TGATGTGCATGAAAAAAAAA+TGG | + | chr6_4:69949538-69949557 | None:intergenic | 25.0% |
| ! | ATTTATGGAAAGAAAATGAG+AGG | + | chr6_4:69949565-69949584 | None:intergenic | 25.0% |
| ! | AGAATAAAAGGAAGAAGAAA+TGG | - | chr6_4:69949662-69949681 | Msa0994740:exon | 25.0% |
| ! | TACATCTTGATTACAACATA+AGG | + | chr6_4:69949801-69949820 | None:intergenic | 25.0% |
| ! | TGTAATCAAGATGTATAATC+AGG | - | chr6_4:69949806-69949825 | Msa0994740:CDS | 25.0% |
| ! | GAACTAACATTAAGAAAAGT+TGG | + | chr6_4:69949904-69949923 | None:intergenic | 25.0% |
| ! | TGAAAAAAAATTAAAGGGGT+TGG | + | chr6_4:69949929-69949948 | None:intergenic | 25.0% |
| !!! | GCTTTTGATTTATTGAATCA+AGG | - | chr6_4:69949971-69949990 | Msa0994740:intron | 25.0% |
| ! | TCAATAACAAGAAAATTGAG+TGG | + | chr6_4:69950054-69950073 | None:intergenic | 25.0% |
| ! | TAATATATTGGATTGCATCA+AGG | - | chr6_4:69950113-69950132 | Msa0994740:intron | 25.0% |
| ! | AATATATTGGATTGCATCAA+GGG | - | chr6_4:69950114-69950133 | Msa0994740:intron | 25.0% |
| ! | ATTGATGTTGAATGTAACAT+AGG | - | chr6_4:69950325-69950344 | Msa0994740:intron | 25.0% |
| !!! | ACATAGGTTTTAGTTATTGA+AGG | - | chr6_4:69950341-69950360 | Msa0994740:intron | 25.0% |
| !!! | CATAGGTTTTAGTTATTGAA+GGG | - | chr6_4:69950342-69950361 | Msa0994740:intron | 25.0% |
| ! | CAAAAACTGTTTAACTGAAA+TGG | + | chr6_4:69950602-69950621 | None:intergenic | 25.0% |
| !!! | ATTCTTCCATCTCTTTTTTT+AGG | - | chr6_4:69950877-69950896 | Msa0994740:CDS | 25.0% |
| !!! | TTCTTCCATCTCTTTTTTTA+GGG | - | chr6_4:69950878-69950897 | Msa0994740:CDS | 25.0% |
| !!! | AGTAATGAATTTTGAAACTG+TGG | - | chr6_4:69950910-69950929 | Msa0994740:CDS | 25.0% |
| ! | ATTCAAAGTGAGAAAAGAAA+GGG | + | chr6_4:69950956-69950975 | None:intergenic | 25.0% |
| ! | TTATGGTCAGTAACATTTAA+TGG | + | chr6_4:69951069-69951088 | None:intergenic | 25.0% |
| ! | GTAAAAATTCTTTACACTGA+AGG | - | chr6_4:69951337-69951356 | Msa0994740:intron | 25.0% |
| !! | TTTTAGCAAAGATGACAAAA+TGG | - | chr6_4:69951464-69951483 | Msa0994740:intron | 25.0% |
| ! | TTTAGCAAAGATGACAAAAT+GGG | - | chr6_4:69951465-69951484 | Msa0994740:intron | 25.0% |
| ! | ATAATAAATACAGCTCTCTT+CGG | + | chr6_4:69951604-69951623 | None:intergenic | 25.0% |
| ! | AGCTGTATTTATTATAGCAA+TGG | - | chr6_4:69951609-69951628 | Msa0994740:CDS | 25.0% |
| ! | TTATTATGCCTTCAACTATA+TGG | - | chr6_4:69951755-69951774 | Msa0994740:five_prime_UTR | 25.0% |
| ACAAAGATGTGTACTATGAA+TGG | + | chr6_4:69949497-69949516 | None:intergenic | 30.0% | |
| TGTGCATGAAAAAAAAATGG+TGG | + | chr6_4:69949535-69949554 | None:intergenic | 30.0% | |
| !!! | AGAGATTTTTTTGATGCTGA+TGG | + | chr6_4:69949696-69949715 | None:intergenic | 30.0% |
| AGCATCAAAAAAATCTCTGA+TGG | - | chr6_4:69949698-69949717 | Msa0994740:CDS | 30.0% | |
| ! | GTTATGATGATGATGATGAA+TGG | + | chr6_4:69949860-69949879 | None:intergenic | 30.0% |
| TGAAGAAAATGAGTAGAAAC+TGG | - | chr6_4:69950223-69950242 | Msa0994740:intron | 30.0% | |
| !!! | TGTTGACACTTTTTCTATAC+AGG | - | chr6_4:69950255-69950274 | Msa0994740:intron | 30.0% |
| AAAAGAATGTTAATCCTGAG+TGG | - | chr6_4:69950470-69950489 | Msa0994740:intron | 30.0% | |
| AATCACTTACCAATGTAACT+GGG | + | chr6_4:69950534-69950553 | None:intergenic | 30.0% | |
| CTGCGGATAAAGAAATATAT+CGG | + | chr6_4:69950794-69950813 | None:intergenic | 30.0% | |
| TTTATGGTTCCAATAAAACC+AGG | - | chr6_4:69950831-69950850 | Msa0994740:intron | 30.0% | |
| !!! | TCTCAATATCCTGGTTTTAT+TGG | + | chr6_4:69950843-69950862 | None:intergenic | 30.0% |
| TTGTACCCTAAAAAAAGAGA+TGG | + | chr6_4:69950886-69950905 | None:intergenic | 30.0% | |
| CATTCAAAGTGAGAAAAGAA+AGG | + | chr6_4:69950957-69950976 | None:intergenic | 30.0% | |
| !! | TTGATAATGAGTGTCCTAAA+GGG | - | chr6_4:69951013-69951032 | Msa0994740:intron | 30.0% |
| ACAGTATAAACATTTGACAC+TGG | + | chr6_4:69951222-69951241 | None:intergenic | 30.0% | |
| !! | GATTATAAACCTTTAGAACC+AGG | + | chr6_4:69951717-69951736 | None:intergenic | 30.0% |
| !!! | CTATATGGTTTTGTGGATTA+TGG | - | chr6_4:69951770-69951789 | Msa0994740:five_prime_UTR | 30.0% |
| GTGTACTATGAATGGATCAA+TGG | + | chr6_4:69949489-69949508 | None:intergenic | 35.0% | |
| ATAGTACACATCTTTGTCAG+TGG | - | chr6_4:69949500-69949519 | Msa0994740:three_prime_UTR | 35.0% | |
| TAGTACACATCTTTGTCAGT+GGG | - | chr6_4:69949501-69949520 | Msa0994740:three_prime_UTR | 35.0% | |
| !! | GAAAAAAAAATGGTGGTGGT+GGG | + | chr6_4:69949528-69949547 | None:intergenic | 35.0% |
| !! | TGAAAAAAAAATGGTGGTGG+TGG | + | chr6_4:69949529-69949548 | None:intergenic | 35.0% |
| GCATGAAAAAAAAATGGTGG+TGG | + | chr6_4:69949532-69949551 | None:intergenic | 35.0% | |
| TCTCTGATGGAGAATCTATT+AGG | - | chr6_4:69949711-69949730 | Msa0994740:CDS | 35.0% | |
| GATCTATAACAGACAGAGTA+AGG | + | chr6_4:69950504-69950523 | None:intergenic | 35.0% | |
| CAATCACTTACCAATGTAAC+TGG | + | chr6_4:69950535-69950554 | None:intergenic | 35.0% | |
| TATTCAGTGTTGTCGAATAG+CGG | - | chr6_4:69950642-69950661 | Msa0994740:intron | 35.0% | |
| TGACAACACGGATCTATTTA+TGG | - | chr6_4:69950815-69950834 | Msa0994740:intron | 35.0% | |
| ATGCTAAGATCTCAATATCC+TGG | + | chr6_4:69950852-69950871 | None:intergenic | 35.0% | |
| GAGAAAAGAAAGGGTTTGAA+AGG | + | chr6_4:69950947-69950966 | None:intergenic | 35.0% | |
| TCATTATCAAGACCGCAAAT+GGG | + | chr6_4:69951003-69951022 | None:intergenic | 35.0% | |
| !! | CTTGATAATGAGTGTCCTAA+AGG | - | chr6_4:69951012-69951031 | Msa0994740:intron | 35.0% |
| ! | CTTAACCAGTTTTACCCTTT+AGG | + | chr6_4:69951030-69951049 | None:intergenic | 35.0% |
| AGCACTCGTTAAAGAAACAA+TGG | + | chr6_4:69951155-69951174 | None:intergenic | 35.0% | |
| CTCAAAAAAATGAGTTCCCT+TGG | + | chr6_4:69951178-69951197 | None:intergenic | 35.0% | |
| CAATGTATTGGATTGCTCAT+TGG | - | chr6_4:69951396-69951415 | Msa0994740:intron | 35.0% | |
| ! | ATTCCACATTTTGCAGTCTA+AGG | + | chr6_4:69951656-69951675 | None:intergenic | 35.0% |
| !! | ATTGATCTTCCTGGTTCTAA+AGG | - | chr6_4:69951705-69951724 | Msa0994740:exon | 35.0% |
| CCACAAAACCATATAGTTGA+AGG | + | chr6_4:69951766-69951785 | None:intergenic | 35.0% | |
| !! | CCTTCAACTATATGGTTTTG+TGG | - | chr6_4:69951763-69951782 | Msa0994740:five_prime_UTR | 35.0% |
| AGAATCTATTAGGCCTTCTG+AGG | - | chr6_4:69949721-69949740 | Msa0994740:CDS | 40.0% | |
| GAATCTATTAGGCCTTCTGA+GGG | - | chr6_4:69949722-69949741 | Msa0994740:CDS | 40.0% | |
| TCCTAATCACCCAGTTACAT+TGG | - | chr6_4:69950522-69950541 | Msa0994740:intron | 40.0% | |
| ACCAATGTAACTGGGTGATT+AGG | + | chr6_4:69950526-69950545 | None:intergenic | 40.0% | |
| CAAAGTGTGCTGTCAAATAG+CGG | - | chr6_4:69950732-69950751 | Msa0994740:intron | 40.0% | |
| TTTATCCGCAGTTGACAACA+CGG | - | chr6_4:69950803-69950822 | Msa0994740:intron | 40.0% | |
| TTGTCCATTCTACCCATTTG+CGG | - | chr6_4:69950988-69951007 | Msa0994740:intron | 40.0% | |
| CTCATTATCAAGACCGCAAA+TGG | + | chr6_4:69951004-69951023 | None:intergenic | 40.0% | |
| AGTGTCCTAAAGGGTAAAAC+TGG | - | chr6_4:69951022-69951041 | Msa0994740:intron | 40.0% | |
| TTTCTTTAACGAGTGCTCCA+AGG | - | chr6_4:69951158-69951177 | Msa0994740:intron | 40.0% | |
| TTCTTTAACGAGTGCTCCAA+GGG | - | chr6_4:69951159-69951178 | Msa0994740:intron | 40.0% | |
| AGATGACAAAATGGGAGATG+CGG | - | chr6_4:69951473-69951492 | Msa0994740:intron | 40.0% | |
| TGGTTGTATCCGCTTGATTA+CGG | + | chr6_4:69951562-69951581 | None:intergenic | 40.0% | |
| GCAGTCTAAGGATCATATCT+TGG | + | chr6_4:69951644-69951663 | None:intergenic | 40.0% | |
| GATCCTTAGACTGCAAAATG+TGG | - | chr6_4:69951650-69951669 | Msa0994740:CDS | 40.0% | |
| AGACTGCAAAATGTGGAATG+TGG | - | chr6_4:69951657-69951676 | Msa0994740:CDS | 40.0% | |
| AAATGTGGAATGTGGTGAAG+TGG | - | chr6_4:69951665-69951684 | Msa0994740:CDS | 40.0% | |
| AAGTGGAAATCAGTTTGCAC+TGG | - | chr6_4:69951682-69951701 | Msa0994740:CDS | 40.0% | |
| TACGAACATCACGAACAGCA+AGG | + | chr6_4:69949770-69949789 | None:intergenic | 45.0% | |
| GTAAGGTCTTCATTCCACTC+AGG | + | chr6_4:69950487-69950506 | None:intergenic | 45.0% | |
| TAGATCCGTGTTGTCAACTG+CGG | + | chr6_4:69950811-69950830 | None:intergenic | 45.0% | |
| GGGTTTGAAAGGTTTGCATG+AGG | + | chr6_4:69950936-69950955 | None:intergenic | 45.0% | |
| AAGACCGCAAATGGGTAGAA+TGG | + | chr6_4:69950995-69951014 | None:intergenic | 45.0% | |
| GGCAGTGTATCAGAACATCT+CGG | + | chr6_4:69951201-69951220 | None:intergenic | 45.0% | |
| CATCCTCAAGGCTTCTATGT+AGG | + | chr6_4:69951514-69951533 | None:intergenic | 45.0% | |
| GCCTTGAGGATGAATGTAAC+CGG | - | chr6_4:69951522-69951541 | Msa0994740:intron | 45.0% | |
| AATGTAACCGGCCTTGCAAA+CGG | - | chr6_4:69951534-69951553 | Msa0994740:intron | 45.0% | |
| AAATACAGCTCTCTTCGGCA+AGG | + | chr6_4:69951599-69951618 | None:intergenic | 45.0% | |
| TTGCACTGGATTGATCTTCC+TGG | - | chr6_4:69951696-69951715 | Msa0994740:CDS | 45.0% | |
| !! | AATCTTAATTAATTATTATA+TGG | + | chr6_4:69949641-69949660 | None:intergenic | 5.0% |
| !! | TAAAATAAAATAAAATAAAG+TGG | + | chr6_4:69949998-69950017 | None:intergenic | 5.0% |
| TACAGCAGTGTACAGCGTAG+CGG | - | chr6_4:69950666-69950685 | Msa0994740:intron | 50.0% | |
| GCCGGTTACATTCATCCTCA+AGG | + | chr6_4:69951526-69951545 | None:intergenic | 50.0% | |
| !! | TGATTACGGTGCCGTTTGCA+AGG | + | chr6_4:69951548-69951567 | None:intergenic | 50.0% |
| CAAACGGCACCGTAATCAAG+CGG | - | chr6_4:69951550-69951569 | Msa0994740:intron | 50.0% | |
| GCTTCACACGAACCCTCAGA+AGG | + | chr6_4:69949737-69949756 | None:intergenic | 55.0% | |
| AGATGCGGTATTTGACGCCG+CGG | - | chr6_4:69951488-69951507 | Msa0994740:intron | 55.0% | |
| CAAGGCTTCTATGTAGGCCG+CGG | + | chr6_4:69951508-69951527 | None:intergenic | 55.0% | |
| CGGCCTACATAGAAGCCTTG+AGG | - | chr6_4:69951508-69951527 | Msa0994740:intron | 55.0% | |
| GCAAGGCAGTTGTGCTTGCT+TGG | + | chr6_4:69951582-69951601 | None:intergenic | 55.0% | |
| CTGAGGGTTCGTGTGAAGCG+TGG | - | chr6_4:69949738-69949757 | Msa0994740:CDS | 60.0% | |
| !! | TACGGTGCCGTTTGCAAGGC+CGG | + | chr6_4:69951544-69951563 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 69949471 | 69951931 | 69949471 | ID=Msa0994740;Name=Msa0994740 |
| chr6_4 | mRNA | 69949471 | 69951931 | 69949471 | ID=Msa0994740-mRNA-1;Parent=Msa0994740;Name=Msa0994740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=210|1|1|1|1|1|3|197|177 |
| chr6_4 | exon | 69949471 | 69949958 | 69949471 | ID=Msa0994740-mRNA-1:exon:12953;Parent=Msa0994740-mRNA-1 |
| chr6_4 | exon | 69950859 | 69950954 | 69950859 | ID=Msa0994740-mRNA-1:exon:12952;Parent=Msa0994740-mRNA-1 |
| chr6_4 | exon | 69951575 | 69951931 | 69951575 | ID=Msa0994740-mRNA-1:exon:12951;Parent=Msa0994740-mRNA-1 |
| chr6_4 | five_prime_UTR | 69951722 | 69951931 | 69951722 | ID=Msa0994740-mRNA-1:five_prime_utr;Parent=Msa0994740-mRNA-1 |
| chr6_4 | CDS | 69951575 | 69951721 | 69951575 | ID=Msa0994740-mRNA-1:cds;Parent=Msa0994740-mRNA-1 |
| chr6_4 | CDS | 69950859 | 69950954 | 69950859 | ID=Msa0994740-mRNA-1:cds;Parent=Msa0994740-mRNA-1 |
| chr6_4 | CDS | 69949668 | 69949958 | 69949668 | ID=Msa0994740-mRNA-1:cds;Parent=Msa0994740-mRNA-1 |
| chr6_4 | three_prime_UTR | 69949471 | 69949667 | 69949471 | ID=Msa0994740-mRNA-1:three_prime_utr;Parent=Msa0994740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
