AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994530 MtrunA17_Chr6g0478631 98.588 354 5 0 1 354 1 354 0.0 729
Msa0994530 MtrunA17_Chr6g0460841 96.328 354 13 0 1 354 1 354 0.0 719
Msa0994530 MtrunA17_Chr5g0404521 33.700 273 162 4 2 269 413 671 3.76e-49 175
Msa0994530 MtrunA17_Chr3g0145801 30.319 376 228 8 2 347 421 792 6.97e-46 167
Msa0994530 MtrunA17_Chr3g0124791 25.072 347 217 6 2 341 33 343 1.88e-33 127
Msa0994530 MtrunA17_Chr3g0125031 32.218 239 125 4 3 234 11 219 4.82e-33 125
Msa0994530 MtrunA17_Chr4g0057341 30.556 216 118 4 3 217 17 201 1.25e-24 102
Msa0994530 MtrunA17_Chr5g0404541 43.750 64 36 0 283 346 2 65 9.57e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994530 AT5G27740.1 83.616 354 58 0 1 354 1 354 0.0 644
Msa0994530 AT1G21690.1 33.333 234 119 4 3 229 11 214 1.23e-32 124
Msa0994530 AT1G21690.3 32.636 239 124 4 3 234 11 219 1.54e-32 124
Msa0994530 AT1G21690.2 33.054 239 111 6 3 234 11 207 2.16e-30 118
Msa0994530 AT1G21690.4 32.051 234 115 4 3 229 11 207 5.70e-30 117
Msa0994530 AT1G77470.1 27.347 245 148 3 3 247 41 255 2.85e-29 116
Msa0994530 AT1G63160.1 27.126 247 146 6 3 248 17 230 6.62e-23 98.2

Find 106 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCAATAGTTTCTCAATTT+TGG 0.120613 6_4:+69527844 Msa0994530:five_prime_UTR
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6_4:+69530280 Msa0994530:CDS
CATAACACTGTCGAGGGTTT+TGG 0.212335 6_4:-69528760 None:intergenic
AGAAATCAAATCGGAATTTA+AGG 0.217343 6_4:+69532101 Msa0994530:CDS
TGTCCTCATTTGCTGTTCTA+TGG 0.252413 6_4:+69528939 Msa0994530:CDS
TGCTCATAATCTCAAGAAAT+TGG 0.258033 6_4:+69528797 Msa0994530:CDS
ATGGAAGATTTCTGATGTTT+TGG 0.259387 6_4:+69533770 Msa0994530:three_prime_UTR
TTCAGGTGAAGGTGGAAAAT+AGG 0.275227 6_4:+69529311 Msa0994530:intron
CGGCACCGGGTCCAAACATT+TGG 0.299333 6_4:-69529007 None:intergenic
TCTCTCATCTTCTCAACTTA+AGG 0.307732 6_4:+69533715 Msa0994530:three_prime_UTR
TTTCTTCCCTTTAGTATCAA+TGG 0.323241 6_4:-69530351 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.324156 6_4:+69530362 Msa0994530:CDS
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6_4:+69528996 Msa0994530:CDS
GCTGCAACTTCCTTCTAGTT+TGG 0.326964 6_4:+69532063 Msa0994530:CDS
CACCTTCTCATTCCCACATA+TGG 0.327498 6_4:+69533859 Msa0994530:three_prime_UTR
CTGCGATTCTGCGACGGTCT+AGG 0.328997 6_4:-69527956 None:intergenic
TTCTTCCCTTTAGTATCAAT+GGG 0.348124 6_4:-69530350 None:intergenic
TCAGGTGAAGGTGGAAAATA+GGG 0.353576 6_4:+69529312 Msa0994530:intron
TTATGAGCTATTGAGGAAAC+TGG 0.357086 6_4:+69532720 Msa0994530:CDS
CTATACATTGGCAGCATTTG+TGG 0.358356 6_4:+69533565 Msa0994530:intron
GCAAGTCTCAAATGACAATA+TGG 0.375769 6_4:-69532128 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6_4:-69530281 None:intergenic
CTATTTACCTGTTCTTCACT+TGG 0.411342 6_4:-69530912 None:intergenic
TATACTCCTCCCAGTCCATT+GGG 0.413295 6_4:-69532306 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6_4:+69532353 Msa0994530:CDS
GACTTCTTTATGAGCTATTG+AGG 0.419698 6_4:+69532713 Msa0994530:CDS
AATACAATAAAATTGTATCC+TGG 0.422379 6_4:-69533661 None:intergenic
GAGAGTGAGCAGTCGAGCTT+CGG 0.427198 6_4:-69528013 None:intergenic
CTTCAAATTGAAACCATATG+TGG 0.430907 6_4:-69533872 None:intergenic
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6_4:+69530316 Msa0994530:CDS
TGTTCTGCGGAGAGAATGTT+GGG 0.433518 6_4:-69530784 None:intergenic
TCCTTCCTCATCGCAACATT+CGG 0.436381 6_4:+69533611 Msa0994530:CDS
CAAAACCCTCGACAGTGTTA+TGG 0.439317 6_4:+69528761 Msa0994530:CDS
TGCGATTCTGCGACGGTCTA+GGG 0.439561 6_4:-69527955 None:intergenic
TAATGCACCAAGTGAAGAAC+AGG 0.440498 6_4:+69530905 Msa0994530:CDS
GTTTGGACCCGGTGCCGAAA+AGG 0.441219 6_4:+69529013 Msa0994530:CDS
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6_4:+69532040 Msa0994530:CDS
CGGATGGAGTGGAGCAGAGA+TGG 0.443493 6_4:-69528039 None:intergenic
TTGCTGTTCTATGGTCCATC+AGG 0.446874 6_4:+69528948 Msa0994530:CDS
CAATGGTGCTTTGCTTTCCC+AGG 0.449651 6_4:+69533643 Msa0994530:three_prime_UTR
GGAAAATAGGGCTTGGAAAG+TGG 0.454758 6_4:+69529324 Msa0994530:CDS
ATGCGAGCAGCCAAACTAGA+AGG 0.460248 6_4:-69532073 None:intergenic
AATTCGCACATTAAGACAAC+GGG 0.461988 6_4:-69530883 None:intergenic
TTTAGGTTGTTTCAAGTTCG+AGG 0.467965 6_4:+69532543 Msa0994530:intron
AATAGACCCATTGATACTAA+AGG 0.470695 6_4:+69530344 Msa0994530:CDS
ATACAATAAAATTGTATCCT+GGG 0.471662 6_4:-69533660 None:intergenic
ATAGACCCATTGATACTAAA+GGG 0.485089 6_4:+69530345 Msa0994530:CDS
TGCTCCACTCCATCCGCCCC+TGG 0.487222 6_4:+69528046 Msa0994530:five_prime_UTR
ATTGATACTAAAGGGAAGAA+AGG 0.491720 6_4:+69530353 Msa0994530:CDS
CTCCGCCAAATGTTTGGACC+CGG 0.492853 6_4:+69529002 Msa0994530:CDS
ATATACTCCTCCCAGTCCAT+TGG 0.499233 6_4:-69532307 None:intergenic
ATTGTTTGCTTGTCGGTGAA+AGG 0.508946 6_4:-69532280 None:intergenic
AGTGAGCAGTCGAGCTTCGG+TGG 0.509560 6_4:-69528010 None:intergenic
TAAAGAGAGCAAAGATGTTG+TGG 0.510082 6_4:+69528721 Msa0994530:exon
AAAGAGAGCAAAGATGTTGT+GGG 0.510264 6_4:+69528722 Msa0994530:exon
GCTGACCAATTGCATTCCTC+CGG 0.512269 6_4:+69532581 Msa0994530:CDS
TGAAGGTGGAAAATAGGGCT+TGG 0.512888 6_4:+69529317 Msa0994530:CDS
TTGAAGAAAGAAGCAGAAGA+AGG 0.513503 6_4:+69528698 Msa0994530:five_prime_UTR
GGGTATTTACCAGGGGCGGA+TGG 0.515387 6_4:-69528055 None:intergenic
AGGCAAGAAAACACTAATCA+TGG 0.515883 6_4:+69528974 Msa0994530:CDS
GATCTCCGGAGGAATGCAAT+TGG 0.520414 6_4:-69532586 None:intergenic
TTTACCTTCAAAATGATCTC+CGG 0.522303 6_4:-69532600 None:intergenic
TGAAGCATGAAATCTGCCAT+TGG 0.524375 6_4:+69532752 Msa0994530:CDS
TTGTTCTGCGGAGAGAATGT+TGG 0.530873 6_4:-69530785 None:intergenic
CGGAGGAGCTCCGAGGTGGA+TGG 0.531079 6_4:-69527985 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6_4:+69532041 Msa0994530:CDS
GAAGCATGAAATCTGCCATT+GGG 0.532158 6_4:+69532753 Msa0994530:CDS
TTTACCAGGGGCGGATGGAG+TGG 0.532233 6_4:-69528050 None:intergenic
GCACATTAAGACAACGGGAG+CGG 0.533938 6_4:-69530878 None:intergenic
CACCGGGTCCAAACATTTGG+CGG 0.535929 6_4:-69529004 None:intergenic
TATGCATACTACAATCATCA+TGG 0.539465 6_4:+69533751 Msa0994530:three_prime_UTR
CAGGAGCATAGGATGCGCCT+TGG 0.541208 6_4:+69533026 Msa0994530:intron
CCTCATTTAACCAGGAGCAT+AGG 0.541849 6_4:+69533015 Msa0994530:intron
GAAATGACTCCAAGCGATGC+AGG 0.543849 6_4:+69530272 Msa0994530:CDS
TTCTATGGTCCATCAGGCGC+AGG 0.544328 6_4:+69528954 Msa0994530:CDS
AATTGCATCTGACATAATGA+AGG 0.551340 6_4:+69532336 Msa0994530:CDS
TTCAAATTGAAACCATATGT+GGG 0.554660 6_4:-69533871 None:intergenic
GCAGTCGAGCTTCGGTGGAA+CGG 0.558506 6_4:-69528005 None:intergenic
CGCTTGGAGTCATTTCGATG+TGG 0.565712 6_4:-69530265 None:intergenic
ACATTCTCTCCGCAGAACAA+TGG 0.565832 6_4:+69530788 Msa0994530:CDS
GGACCATAGAACAGCAAATG+AGG 0.571639 6_4:-69528942 None:intergenic
GCATAGCAGAGAAATCAAAT+CGG 0.583422 6_4:+69532092 Msa0994530:CDS
AATCAAATCGGAATTTAAGG+AGG 0.587176 6_4:+69532104 Msa0994530:CDS
CATATGTGGGAATGAGAAGG+TGG 0.593706 6_4:-69533858 None:intergenic
TGTATTTCTCCATTGTTCTG+CGG 0.594797 6_4:-69530797 None:intergenic
CTGTGACTGCGATTCTGCGA+CGG 0.607491 6_4:-69527962 None:intergenic
GTTGATGTTTCAGGTGAAGG+TGG 0.620590 6_4:+69529303 Msa0994530:intron
GTCGAGCTTCGGTGGAACGG+AGG 0.622423 6_4:-69528002 None:intergenic
GTTTGGGTATTTACCAGGGG+CGG 0.623216 6_4:-69528059 None:intergenic
GTGAACCATAACACTGTCGA+GGG 0.625900 6_4:-69528766 None:intergenic
ACCTTCAAAATGATCTCCGG+AGG 0.628271 6_4:-69532597 None:intergenic
ATCAAATCGGAATTTAAGGA+GGG 0.630327 6_4:+69532105 Msa0994530:CDS
GCCGAATGTTGCGATGAGGA+AGG 0.630554 6_4:-69533612 None:intergenic
TTACATAATATGCTGCCCAA+TGG 0.630713 6_4:-69532768 None:intergenic
GGAACGGAGGAGCTCCGAGG+TGG 0.641257 6_4:-69527989 None:intergenic
TACTCCTCCCAGTCCATTGG+GGG 0.645004 6_4:-69532304 None:intergenic
ATACTCCTCCCAGTCCATTG+GGG 0.647707 6_4:-69532305 None:intergenic
TAATTCGCACATTAAGACAA+CGG 0.648193 6_4:-69530884 None:intergenic
TGTGAACCATAACACTGTCG+AGG 0.649165 6_4:-69528767 None:intergenic
TTCAGCCGAATGTTGCGATG+AGG 0.657182 6_4:-69533616 None:intergenic
GCAGTCACAGCCATCCACCT+CGG 0.659169 6_4:+69527975 Msa0994530:five_prime_UTR
GGTGGAACGGAGGAGCTCCG+AGG 0.666148 6_4:-69527992 None:intergenic
ACATTCGGCTGAAGAAACAA+TGG 0.670874 6_4:+69533626 Msa0994530:exon
ATATGTGGGAATGAGAAGGT+GGG 0.682689 6_4:-69533857 None:intergenic
GTGGAGATTACTGTTGGACA+CGG 0.686923 6_4:-69532150 None:intergenic
AACCATATGTGGGAATGAGA+AGG 0.704061 6_4:-69533861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTGAAAAAGAAAA+AGG - chr6_4:69527895-69527914 None:intergenic 10.0%
!! TAAAAATTGAGTTAAAAAAA+GGG - chr6_4:69528237-69528256 None:intergenic 10.0%
!!! AAAAGTTTTAAATTTTTGTT+TGG + chr6_4:69528882-69528901 Msa0994530:intron 10.0%
!!! TATTTTAAGATAATAAAAGA+AGG + chr6_4:69530423-69530442 Msa0994530:intron 10.0%
!!! ATATTTTATTTTCTATACAT+TGG + chr6_4:69533553-69533572 Msa0994530:intron 10.0%
!!! AATTTTATTGTATTAATGAT+TGG + chr6_4:69533670-69533689 Msa0994530:three_prime_UTR 10.0%
!! AAAAATTGAAAAGAAAGTTT+GGG - chr6_4:69528078-69528097 None:intergenic 15.0%
!! AAAAAATTGAAAAGAAAGTT+TGG - chr6_4:69528079-69528098 None:intergenic 15.0%
!! CTAAAAATTGAGTTAAAAAA+AGG - chr6_4:69528238-69528257 None:intergenic 15.0%
!!! TTTTAAATTTTTGTTTGGAT+CGG + chr6_4:69528887-69528906 Msa0994530:intron 15.0%
!! ATAATATGCTATTATACTTT+AGG + chr6_4:69532526-69532545 Msa0994530:intron 15.0%
!! TGAAAAATAAGAAGTAAAAA+TGG - chr6_4:69532967-69532986 None:intergenic 15.0%
!! ATATATTGATATATAAGTCT+TGG + chr6_4:69533504-69533523 Msa0994530:intron 15.0%
!! TATATTGATATATAAGTCTT+GGG + chr6_4:69533505-69533524 Msa0994530:intron 15.0%
!! GTCTAGAAAAACTAAAAAAA+TGG + chr6_4:69527822-69527841 Msa0994530:five_prime_UTR 20.0%
!! AAAGAAAAAGGAAAGTTAAT+AGG - chr6_4:69527883-69527902 None:intergenic 20.0%
!! AACAATAAAATACAAAACAC+TGG - chr6_4:69528602-69528621 None:intergenic 20.0%
!!! TTGATTGATTCAAATACAAA+AGG - chr6_4:69528842-69528861 None:intergenic 20.0%
!!! CATCTAACTAAAATTACTTT+TGG - chr6_4:69529143-69529162 None:intergenic 20.0%
!!! TGTTGCAAAGTTTTATTTAA+TGG + chr6_4:69529391-69529410 Msa0994530:intron 20.0%
!!! TGTTGTTTGTAAGAATAAAT+AGG + chr6_4:69529725-69529744 Msa0994530:intron 20.0%
!! TGTAAGAATAAATAGGAAAA+AGG + chr6_4:69529732-69529751 Msa0994530:intron 20.0%
!! TGGTTTCAGAATAATTATAA+AGG - chr6_4:69529878-69529897 None:intergenic 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG + chr6_4:69530316-69530335 Msa0994530:CDS 20.0%
!! GAAAAAAAATTCCAAAACAT+AGG - chr6_4:69530983-69531002 None:intergenic 20.0%
!! TTCAAAACATGAAAACTATA+AGG + chr6_4:69531290-69531309 Msa0994530:intron 20.0%
!!! GTTCTTAAATTTTGATGTTT+TGG - chr6_4:69531340-69531359 None:intergenic 20.0%
!!! CTAGAAAAGCATTTTATAAT+CGG - chr6_4:69531779-69531798 None:intergenic 20.0%
!! GATCATCTTTATTGAATATT+TGG + chr6_4:69531987-69532006 Msa0994530:intron 20.0%
!!! ACTTCTTATTTTTCAAAGTA+AGG + chr6_4:69532972-69532991 Msa0994530:intron 20.0%
!!! GTATTCTTTATAATTTGCAA+TGG - chr6_4:69533143-69533162 None:intergenic 20.0%
!!! CTACTTATTTTCATTTACTT+TGG - chr6_4:69533210-69533229 None:intergenic 20.0%
!! TTTGTAAGTAAATCATAGTA+TGG - chr6_4:69533266-69533285 None:intergenic 20.0%
!! TTTGATAGATTAAACATGTT+AGG + chr6_4:69533300-69533319 Msa0994530:intron 20.0%
!! TTGATAGATTAAACATGTTA+GGG + chr6_4:69533301-69533320 Msa0994530:intron 20.0%
!!! TCTAGAGTAAAAAAAATAGA+GGG - chr6_4:69533448-69533467 None:intergenic 20.0%
!! ATACAATAAAATTGTATCCT+GGG - chr6_4:69533663-69533682 None:intergenic 20.0%
!! AATACAATAAAATTGTATCC+TGG - chr6_4:69533664-69533683 None:intergenic 20.0%
! GATTTAAGCTGTTAATGAAA+AGG + chr6_4:69528179-69528198 Msa0994530:intron 25.0%
! GCAGAATTCAAATAATTAAG+TGG - chr6_4:69528380-69528399 None:intergenic 25.0%
!!! ATTGATTTTGTCTGATTTCA+TGG + chr6_4:69528432-69528451 Msa0994530:intron 25.0%
!! TTGATTTTGTCTGATTTCAT+GGG + chr6_4:69528433-69528452 Msa0994530:intron 25.0%
!!! TCTGAATTTTGAAAGAATGT+TGG + chr6_4:69529083-69529102 Msa0994530:intron 25.0%
! TCAACAAAGACAATTTAGAA+TGG - chr6_4:69529288-69529307 None:intergenic 25.0%
!! AAGAAAAGAGAAGTATGAAA+AGG - chr6_4:69529364-69529383 None:intergenic 25.0%
! TCTTAACATTTGTATAGGTT+AGG + chr6_4:69529420-69529439 Msa0994530:intron 25.0%
! ATTAGCGGTCAATAATAATA+TGG - chr6_4:69529484-69529503 None:intergenic 25.0%
! ACTCTTCTCTATCAATATAA+CGG - chr6_4:69529519-69529538 None:intergenic 25.0%
! ACTTTGTAAAAACAAATCAG+TGG - chr6_4:69529577-69529596 None:intergenic 25.0%
! ATTTCATTAAACATTGCTGT+AGG + chr6_4:69529609-69529628 Msa0994530:intron 25.0%
! CGTATTATACTTATGAAATG+TGG + chr6_4:69529967-69529986 Msa0994530:intron 25.0%
! ATACTTATGAAATGTGGAAT+TGG + chr6_4:69529973-69529992 Msa0994530:intron 25.0%
! TACTTATGAAATGTGGAATT+GGG + chr6_4:69529974-69529993 Msa0994530:intron 25.0%
!!! GTTTATTTTTTCTGAGTAGA+AGG - chr6_4:69530044-69530063 None:intergenic 25.0%
! ACATAATATTGGAATTTCCA+AGG - chr6_4:69530109-69530128 None:intergenic 25.0%
! AAATGTAGTGCACATAATAT+TGG - chr6_4:69530120-69530139 None:intergenic 25.0%
! AATAAAAGAAGGAATCTTCA+TGG + chr6_4:69530434-69530453 Msa0994530:intron 25.0%
!!! GTTCTTGAATTTTGATGTTT+TGG - chr6_4:69531255-69531274 None:intergenic 25.0%
! AAACATCAAAATTCAAGAAC+TGG + chr6_4:69531255-69531274 Msa0994530:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG + chr6_4:69531301-69531320 Msa0994530:intron 25.0%
! AAAATGCAGATTAAGAAACT+TGG + chr6_4:69531736-69531755 Msa0994530:intron 25.0%
! AGAAATCAAATCGGAATTTA+AGG + chr6_4:69532101-69532120 Msa0994530:CDS 25.0%
!! AAGCTTTTCTTTAATGAAGA+AGG + chr6_4:69532225-69532244 Msa0994530:intron 25.0%
!! TATCAAAAGCAAACCTTTTT+GGG - chr6_4:69532369-69532388 None:intergenic 25.0%
! GTAAGTGCATTATCAAATTA+TGG + chr6_4:69532787-69532806 Msa0994530:intron 25.0%
! TGGACAAATATTACAAATGT+TGG + chr6_4:69533330-69533349 Msa0994530:intron 25.0%
! GGACAAATATTACAAATGTT+GGG + chr6_4:69533331-69533350 Msa0994530:intron 25.0%
!! GTCTAGAGTAAAAAAAATAG+AGG - chr6_4:69533449-69533468 None:intergenic 25.0%
!! TATAGCAATTGCTTTATTCA+AGG + chr6_4:69533474-69533493 Msa0994530:intron 25.0%
! CAATAGTTTCTCAATTTTGG+CGG + chr6_4:69527847-69527866 Msa0994530:five_prime_UTR 30.0%
!! AATAGTTTCTCAATTTTGGC+GGG + chr6_4:69527848-69527867 Msa0994530:five_prime_UTR 30.0%
! TGATTTTGTCTGATTTCATG+GGG + chr6_4:69528434-69528453 Msa0994530:intron 30.0%
TGCTCATAATCTCAAGAAAT+TGG + chr6_4:69528797-69528816 Msa0994530:CDS 30.0%
! GTGACAAAAAAAGACCTTTT+CGG - chr6_4:69529030-69529049 None:intergenic 30.0%
ATTGTCTTTGTTGATGTTTC+AGG + chr6_4:69529294-69529313 Msa0994530:intron 30.0%
AGCACTCTTAACATTTGTAT+AGG + chr6_4:69529415-69529434 Msa0994530:intron 30.0%
AATATCATTGTCTTGATCCT+TGG + chr6_4:69530089-69530108 Msa0994530:intron 30.0%
! TGAATCATTGGTGTCTTATT+TGG + chr6_4:69530151-69530170 Msa0994530:intron 30.0%
AATAGACCCATTGATACTAA+AGG + chr6_4:69530344-69530363 Msa0994530:CDS 30.0%
ATAGACCCATTGATACTAAA+GGG + chr6_4:69530345-69530364 Msa0994530:CDS 30.0%
TTCTTCCCTTTAGTATCAAT+GGG - chr6_4:69530353-69530372 None:intergenic 30.0%
TTTCTTCCCTTTAGTATCAA+TGG - chr6_4:69530354-69530373 None:intergenic 30.0%
ATTGATACTAAAGGGAAGAA+AGG + chr6_4:69530353-69530372 Msa0994530:CDS 30.0%
AAAGGGAAGAAAGGATTTAA+AGG + chr6_4:69530362-69530381 Msa0994530:CDS 30.0%
AGAAAGGATTTAAAGGTAAC+CGG + chr6_4:69530369-69530388 Msa0994530:intron 30.0%
AGTTTAACAACAAAAACAGC+CGG - chr6_4:69530391-69530410 None:intergenic 30.0%
TGACTGTGTATAATGATGTT+TGG + chr6_4:69530532-69530551 Msa0994530:intron 30.0%
TTTACCTGTGTAATGCTTTA+AGG + chr6_4:69530570-69530589 Msa0994530:intron 30.0%
TAATTCGCACATTAAGACAA+CGG - chr6_4:69530887-69530906 None:intergenic 30.0%
AACAGATTCCATTATTTCCT+TGG - chr6_4:69530959-69530978 None:intergenic 30.0%
ATAGAACAACATTCATCTAC+TGG - chr6_4:69531115-69531134 None:intergenic 30.0%
TAGATGAATGTTGTTCTATG+AGG + chr6_4:69531116-69531135 Msa0994530:intron 30.0%
TATAAGTCCATGCTTCATAA+GGG + chr6_4:69531172-69531191 Msa0994530:intron 30.0%
! AGTTTTCATGATTTGAGCTT+AGG - chr6_4:69531202-69531221 None:intergenic 30.0%
CTCAAATCATGAAAACTACA+AGG + chr6_4:69531205-69531224 Msa0994530:intron 30.0%
AAAACTACAAGGAAACCATA+CGG + chr6_4:69531216-69531235 Msa0994530:intron 30.0%
AAACTATAAGGAAACCATAC+GGG + chr6_4:69531302-69531321 Msa0994530:intron 30.0%
! GTAGAATGTCTTGTTAACTT+GGG - chr6_4:69531421-69531440 None:intergenic 30.0%
! AGTAGAATGTCTTGTTAACT+TGG - chr6_4:69531422-69531441 None:intergenic 30.0%
!! AAGACATTCTACTGACTTAT+TGG + chr6_4:69531429-69531448 Msa0994530:intron 30.0%
CAATATTAAGCATGTTCTCT+GGG - chr6_4:69531458-69531477 None:intergenic 30.0%
TCAATATTAAGCATGTTCTC+TGG - chr6_4:69531459-69531478 None:intergenic 30.0%
AAGGAATCTTACATAGGATT+GGG - chr6_4:69531484-69531503 None:intergenic 30.0%
TAAGGAATCTTACATAGGAT+TGG - chr6_4:69531485-69531504 None:intergenic 30.0%
ATCAACATTCTTAGGAGAAA+TGG - chr6_4:69531546-69531565 None:intergenic 30.0%
CTGTCATAATCAACATTCTT+AGG - chr6_4:69531554-69531573 None:intergenic 30.0%
TGAAATAATTCCGAAATGCA+TGG + chr6_4:69531663-69531682 Msa0994530:intron 30.0%
ATTAAGAAACTTGGAAAGGA+AGG + chr6_4:69531745-69531764 Msa0994530:intron 30.0%
! TGCTTTTCTAGATATACTGA+AGG + chr6_4:69531788-69531807 Msa0994530:intron 30.0%
TGATATTACTTTCTGCGATT+TGG + chr6_4:69531815-69531834 Msa0994530:intron 30.0%
! TTCTAAGGATTATATCTGCT+TGG + chr6_4:69531848-69531867 Msa0994530:intron 30.0%
TTAACATCCAACTTATAGAG+TGG - chr6_4:69531914-69531933 None:intergenic 30.0%
TGAATATTTGGAAATCCATG+TGG + chr6_4:69531999-69532018 Msa0994530:intron 30.0%
! GTTGAAGTTTTACAGTTCAT+TGG + chr6_4:69532028-69532047 Msa0994530:CDS 30.0%
AGTTCATTGGTAAGAAAGAA+GGG + chr6_4:69532041-69532060 Msa0994530:CDS 30.0%
AATCAAATCGGAATTTAAGG+AGG + chr6_4:69532104-69532123 Msa0994530:CDS 30.0%
ATCAAATCGGAATTTAAGGA+GGG + chr6_4:69532105-69532124 Msa0994530:CDS 30.0%
ACATGCTTCCAATTTAATCT+GGG + chr6_4:69532171-69532190 Msa0994530:intron 30.0%
TTATGCATCCCAGATTAAAT+TGG - chr6_4:69532182-69532201 None:intergenic 30.0%
AATTGCATCTGACATAATGA+AGG + chr6_4:69532336-69532355 Msa0994530:CDS 30.0%
! GTATCAAAAGCAAACCTTTT+TGG - chr6_4:69532370-69532389 None:intergenic 30.0%
AGTTGACAAAACAATCAAGT+AGG - chr6_4:69532462-69532481 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+CGG - chr6_4:69532603-69532622 None:intergenic 30.0%
TTGGGTAAAACATATACAGA+AGG - chr6_4:69532868-69532887 None:intergenic 30.0%
! CATTAACTGGTCTAATATCA+AGG - chr6_4:69532926-69532945 None:intergenic 30.0%
CTTGATATTAGACCAGTTAA+TGG + chr6_4:69532924-69532943 Msa0994530:intron 30.0%
CAAAATCTTCAACCATTAAC+TGG - chr6_4:69532939-69532958 None:intergenic 30.0%
! AAAGCAATTTTTCACATCGA+AGG + chr6_4:69533053-69533072 Msa0994530:CDS 30.0%
ATCTGAATGTGTGAAATAGT+TGG + chr6_4:69533083-69533102 Msa0994530:intron 30.0%
TCTGAATGTGTGAAATAGTT+GGG + chr6_4:69533084-69533103 Msa0994530:intron 30.0%
! ATTTACTTTGGAGACAAACA+AGG - chr6_4:69533198-69533217 None:intergenic 30.0%
AGCATAGAAAATGCAAATTC+AGG + chr6_4:69533385-69533404 Msa0994530:intron 30.0%
GCATAGAAAATGCAAATTCA+GGG + chr6_4:69533386-69533405 Msa0994530:intron 30.0%
TATGCATACTACAATCATCA+TGG + chr6_4:69533751-69533770 Msa0994530:three_prime_UTR 30.0%
! ATGGAAGATTTCTGATGTTT+TGG + chr6_4:69533770-69533789 Msa0994530:three_prime_UTR 30.0%
! GCGCAATAGTTTCTCAATTT+TGG + chr6_4:69527844-69527863 Msa0994530:five_prime_UTR 35.0%
AAAGTTTGGGTATTTACCAG+GGG - chr6_4:69528065-69528084 None:intergenic 35.0%
GAAAGTTTGGGTATTTACCA+GGG - chr6_4:69528066-69528085 None:intergenic 35.0%
AGAAAGTTTGGGTATTTACC+AGG - chr6_4:69528067-69528086 None:intergenic 35.0%
! GATTTTGTCTGATTTCATGG+GGG + chr6_4:69528435-69528454 Msa0994530:intron 35.0%
!! ATAGATAAAGGAGTGTCAAC+GGG - chr6_4:69528630-69528649 None:intergenic 35.0%
!! CATAGATAAAGGAGTGTCAA+CGG - chr6_4:69528631-69528650 None:intergenic 35.0%
AGACTCACTATATCCAACAA+AGG - chr6_4:69528661-69528680 None:intergenic 35.0%
TTGAAGAAAGAAGCAGAAGA+AGG + chr6_4:69528698-69528717 Msa0994530:five_prime_UTR 35.0%
TAAAGAGAGCAAAGATGTTG+TGG + chr6_4:69528721-69528740 Msa0994530:exon 35.0%
AAAGAGAGCAAAGATGTTGT+GGG + chr6_4:69528722-69528741 Msa0994530:exon 35.0%
AGGCAAGAAAACACTAATCA+TGG + chr6_4:69528974-69528993 Msa0994530:CDS 35.0%
! TTTGTTGATGTTTCAGGTGA+AGG + chr6_4:69529300-69529319 Msa0994530:intron 35.0%
!! GTGGTAAGTTGATATCGATA+AGG - chr6_4:69529558-69529577 None:intergenic 35.0%
!! AAACTGACTTTGGTCAGTTT+TGG - chr6_4:69529656-69529675 None:intergenic 35.0%
GGAAAAAGGCAAGTCATAAT+TGG + chr6_4:69529746-69529765 Msa0994530:intron 35.0%
ACAACCACTCAATAACTTCT+AGG - chr6_4:69529775-69529794 None:intergenic 35.0%
AGAAGTTATTGAGTGGTTGT+TGG + chr6_4:69529775-69529794 Msa0994530:intron 35.0%
GAAGTTATTGAGTGGTTGTT+GGG + chr6_4:69529776-69529795 Msa0994530:intron 35.0%
AAGATGTAGAACAAAGACAC+AGG - chr6_4:69529851-69529870 None:intergenic 35.0%
TGCAAGAACACACAATACAA+TGG - chr6_4:69529898-69529917 None:intergenic 35.0%
TGTGTGTTCTTGCAATATTC+TGG + chr6_4:69529904-69529923 Msa0994530:intron 35.0%
GAACTATTTCCAGAACTGTT+TGG + chr6_4:69529931-69529950 Msa0994530:intron 35.0%
AAACTGATACCAAACAGTTC+TGG - chr6_4:69529943-69529962 None:intergenic 35.0%
TTTGCAACTGTTCTGACTAT+AGG + chr6_4:69529999-69530018 Msa0994530:intron 35.0%
!!! AGTAGAAGGCATTCATTTTG+AGG - chr6_4:69530030-69530049 None:intergenic 35.0%
TTCTCTGTGAACTGAATCAT+TGG + chr6_4:69530139-69530158 Msa0994530:intron 35.0%
GTGTATAATGATGTTTGGTC+TGG + chr6_4:69530537-69530556 Msa0994530:intron 35.0%
TGTATTTCTCCATTGTTCTG+CGG - chr6_4:69530800-69530819 None:intergenic 35.0%
AATTCGCACATTAAGACAAC+GGG - chr6_4:69530886-69530905 None:intergenic 35.0%
CTATTTACCTGTTCTTCACT+TGG - chr6_4:69530915-69530934 None:intergenic 35.0%
TGTAGTGTCCAAGGAAATAA+TGG + chr6_4:69530948-69530967 Msa0994530:intron 35.0%
! GGAATCTGTTTCCTATGTTT+TGG + chr6_4:69530969-69530988 Msa0994530:intron 35.0%
CCTCAATGCTAAAAAACAAG+GGG - chr6_4:69531005-69531024 None:intergenic 35.0%
GCCTCAATGCTAAAAAACAA+GGG - chr6_4:69531006-69531025 None:intergenic 35.0%
TGCCTCAATGCTAAAAAACA+AGG - chr6_4:69531007-69531026 None:intergenic 35.0%
! ATTGAGGCAATTGTTTTCTC+TGG + chr6_4:69531018-69531037 Msa0994530:intron 35.0%
ATGAATGTTGTTCTATGAGG+TGG + chr6_4:69531119-69531138 Msa0994530:intron 35.0%
GTATAAGTCCATGCTTCATA+AGG + chr6_4:69531171-69531190 Msa0994530:intron 35.0%
AGGAATCTTACATAGGATTG+GGG - chr6_4:69531483-69531502 None:intergenic 35.0%
GCACATAAGGAATCTTACAT+AGG - chr6_4:69531490-69531509 None:intergenic 35.0%
ATTCTTAGGAGAAATGGTCT+TGG - chr6_4:69531540-69531559 None:intergenic 35.0%
CAAACAATAATGCCCAACAT+TGG - chr6_4:69531702-69531721 None:intergenic 35.0%
!!! CTGCATTTTTTAGTATGTCC+TGG - chr6_4:69531725-69531744 None:intergenic 35.0%
GCAGATTAAGAAACTTGGAA+AGG + chr6_4:69531741-69531760 Msa0994530:intron 35.0%
TTTGGTCAAGTTCTCTTCTA+AGG + chr6_4:69531833-69531852 Msa0994530:intron 35.0%
AGCATTTCCACTCTATAAGT+TGG + chr6_4:69531904-69531923 Msa0994530:intron 35.0%
CAGTTCATTGGTAAGAAAGA+AGG + chr6_4:69532040-69532059 Msa0994530:CDS 35.0%
GCATAGCAGAGAAATCAAAT+CGG + chr6_4:69532092-69532111 Msa0994530:CDS 35.0%
GCAAGTCTCAAATGACAATA+TGG - chr6_4:69532131-69532150 None:intergenic 35.0%
! CAGATTAAATTGGAAGCATG+TGG - chr6_4:69532172-69532191 None:intergenic 35.0%
CACATGCTTCCAATTTAATC+TGG + chr6_4:69532170-69532189 Msa0994530:intron 35.0%
TGACAAAACAATCAAGTAGG+CGG - chr6_4:69532459-69532478 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+AGG + chr6_4:69532543-69532562 Msa0994530:intron 35.0%
GACTTCTTTATGAGCTATTG+AGG + chr6_4:69532713-69532732 Msa0994530:CDS 35.0%
TTATGAGCTATTGAGGAAAC+TGG + chr6_4:69532720-69532739 Msa0994530:CDS 35.0%
TTACATAATATGCTGCCCAA+TGG - chr6_4:69532771-69532790 None:intergenic 35.0%
! TTACCCAATTTGATAGCTCA+CGG + chr6_4:69532880-69532899 Msa0994530:intron 35.0%
GAAAAATTGCTTTCTGTCCA+AGG - chr6_4:69533046-69533065 None:intergenic 35.0%
CAAATTACGGATGCAATTGA+TGG - chr6_4:69533167-69533186 None:intergenic 35.0%
CAAGGAGAATGTGCAAATTA+CGG - chr6_4:69533180-69533199 None:intergenic 35.0%
TAAACATGTTAGGGACTAAC+TGG + chr6_4:69533310-69533329 Msa0994530:intron 35.0%
TGCAAATTCAGGGACAAAAA+TGG + chr6_4:69533396-69533415 Msa0994530:intron 35.0%
AAATTCAGGGACAAAAATGG+TGG + chr6_4:69533399-69533418 Msa0994530:intron 35.0%
ATCAGCAAGCAGATATTGTA+TGG - chr6_4:69533532-69533551 None:intergenic 35.0%
TCTCTCATCTTCTCAACTTA+AGG + chr6_4:69533715-69533734 Msa0994530:three_prime_UTR 35.0%
ATTTCATGGGGGATAAGGAA+TGG + chr6_4:69528446-69528465 Msa0994530:intron 40.0%
!! TTCGGTGCTATATTAGGCTT+AGG - chr6_4:69528486-69528505 None:intergenic 40.0%
! CCTAATATAGCACCGAAACA+CGG + chr6_4:69528489-69528508 Msa0994530:intron 40.0%
TAACAAGATTCGCCGTGTTT+CGG - chr6_4:69528504-69528523 None:intergenic 40.0%
!! TAGATAAAGGAGTGTCAACG+GGG - chr6_4:69528629-69528648 None:intergenic 40.0%
CGTTGACACTCCTTTATCTA+TGG + chr6_4:69528629-69528648 Msa0994530:intron 40.0%
CACTCCTTTATCTATGGTTG+TGG + chr6_4:69528635-69528654 Msa0994530:intron 40.0%
AAGGCCACAACCATAGATAA+AGG - chr6_4:69528642-69528661 None:intergenic 40.0%
! ATAACACTGTCGAGGGTTTT+GGG - chr6_4:69528762-69528781 None:intergenic 40.0%
!! TGTCCTCATTTGCTGTTCTA+TGG + chr6_4:69528939-69528958 Msa0994530:CDS 40.0%
! AAAAAAGACCTTTTCGGCAC+CGG - chr6_4:69529024-69529043 None:intergenic 40.0%
!!! TTACTTTTGGTGCTCACACA+AGG - chr6_4:69529130-69529149 None:intergenic 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG + chr6_4:69529311-69529330 Msa0994530:intron 40.0%
TCAGGTGAAGGTGGAAAATA+GGG + chr6_4:69529312-69529331 Msa0994530:intron 40.0%
AGACATTGCTCGCTAACTAA+GGG - chr6_4:69529460-69529479 None:intergenic 40.0%
CGGAACTGTTTGACAATTAG+CGG - chr6_4:69529499-69529518 None:intergenic 40.0%
CGATAAGGTTTCTCATTCTC+TGG - chr6_4:69529543-69529562 None:intergenic 40.0%
AAACATTGCTGTAGGATGAG+AGG + chr6_4:69529617-69529636 Msa0994530:intron 40.0%
! CTGACCAAAGTCAGTTTTTG+TGG + chr6_4:69529659-69529678 Msa0994530:intron 40.0%
! ACTGCCACAAAAACTGACTT+TGG - chr6_4:69529666-69529685 None:intergenic 40.0%
GTTGCCTAGAAGTTATTGAG+TGG + chr6_4:69529768-69529787 Msa0994530:intron 40.0%
TTATTGAGTGGTTGTTGGGT+GGG + chr6_4:69529780-69529799 Msa0994530:intron 40.0%
AGAACCAAGCTCTCAAATCT+TGG + chr6_4:69529813-69529832 Msa0994530:intron 40.0%
TAGAACAAAGACACAGGACA+TGG - chr6_4:69529845-69529864 None:intergenic 40.0%
GTGTTCTTGCAATATTCTGG+CGG + chr6_4:69529907-69529926 Msa0994530:intron 40.0%
!! AGTACTTGAGCACTGTTTTC+AGG + chr6_4:69530193-69530212 Msa0994530:intron 40.0%
TCTTCATGGTCAACAAACAG+TGG + chr6_4:69530448-69530467 Msa0994530:intron 40.0%
! AGAGCCTTAAAGCATTACAC+AGG - chr6_4:69530577-69530596 None:intergenic 40.0%
AATAAGAAACCTCTCCACCT+TGG + chr6_4:69530617-69530636 Msa0994530:intron 40.0%
TAATGCACCAAGTGAAGAAC+AGG + chr6_4:69530905-69530924 Msa0994530:CDS 40.0%
! GAAGTTTTCTGTAGTGTCCA+AGG + chr6_4:69530939-69530958 Msa0994530:intron 40.0%
!!! CCCCTTGTTTTTTAGCATTG+AGG + chr6_4:69531002-69531021 Msa0994530:intron 40.0%
! GGCAATTGTTTTCTCTGGTA+AGG + chr6_4:69531023-69531042 Msa0994530:intron 40.0%
GAATGATCATAGACTACCAG+AGG + chr6_4:69531378-69531397 Msa0994530:intron 40.0%
GGAATCTTACATAGGATTGG+GGG - chr6_4:69531482-69531501 None:intergenic 40.0%
!! ATGGTCTTGGAAGTGCTAAA+AGG - chr6_4:69531527-69531546 None:intergenic 40.0%
CGGAATTATTTCAGCCTATG+AGG - chr6_4:69531656-69531675 None:intergenic 40.0%
! AATAATGCCCAACATTGGCT+TGG - chr6_4:69531697-69531716 None:intergenic 40.0%
AGAAACTTGGAAAGGAAGGT+TGG + chr6_4:69531749-69531768 Msa0994530:intron 40.0%
GAAACTTGGAAAGGAAGGTT+GGG + chr6_4:69531750-69531769 Msa0994530:intron 40.0%
AACTTCAACAATCTGCCACA+TGG - chr6_4:69532017-69532036 None:intergenic 40.0%
AAGCATGTGGAGATTACTGT+TGG - chr6_4:69532159-69532178 None:intergenic 40.0%
!! ACAGCTCATGTGTTACTTGT+AGG + chr6_4:69532254-69532273 Msa0994530:intron 40.0%
ATTGTTTGCTTGTCGGTGAA+AGG - chr6_4:69532283-69532302 None:intergenic 40.0%
GGCGGTTATAAAAACTGACA+AGG - chr6_4:69532441-69532460 None:intergenic 40.0%
TGAAGCATGAAATCTGCCAT+TGG + chr6_4:69532752-69532771 Msa0994530:CDS 40.0%
GAAGCATGAAATCTGCCATT+GGG + chr6_4:69532753-69532772 Msa0994530:CDS 40.0%
AGTATCTTCTGCATGAACTC+AGG + chr6_4:69532842-69532861 Msa0994530:intron 40.0%
GTTCCGTGAGCTATCAAATT+GGG - chr6_4:69532886-69532905 None:intergenic 40.0%
TGTTCCGTGAGCTATCAAAT+TGG - chr6_4:69532887-69532906 None:intergenic 40.0%
GGTCTAATATCAAGGCAATG+AGG - chr6_4:69532918-69532937 None:intergenic 40.0%
TTCTTTCCCCTCATTTAACC+AGG + chr6_4:69533007-69533026 Msa0994530:intron 40.0%
TATGCTCCTGGTTAAATGAG+GGG - chr6_4:69533016-69533035 None:intergenic 40.0%
CTATGCTCCTGGTTAAATGA+GGG - chr6_4:69533017-69533036 None:intergenic 40.0%
CTATACATTGGCAGCATTTG+TGG + chr6_4:69533565-69533584 Msa0994530:intron 40.0%
ACATTCGGCTGAAGAAACAA+TGG + chr6_4:69533626-69533645 Msa0994530:exon 40.0%
ATATGTGGGAATGAGAAGGT+GGG - chr6_4:69533860-69533879 None:intergenic 40.0%
AACCATATGTGGGAATGAGA+AGG - chr6_4:69533864-69533883 None:intergenic 40.0%
GTCTGATTTCATGGGGGATA+AGG + chr6_4:69528441-69528460 Msa0994530:intron 45.0%
!! CCGTGTTTCGGTGCTATATT+AGG - chr6_4:69528492-69528511 None:intergenic 45.0%
ACAAAACACTGGCACAGACA+CGG - chr6_4:69528591-69528610 None:intergenic 45.0%
TCTATGGTTGTGGCCTTTGT+TGG + chr6_4:69528645-69528664 Msa0994530:intron 45.0%
! CATAACACTGTCGAGGGTTT+TGG - chr6_4:69528763-69528782 None:intergenic 45.0%
CAAAACCCTCGACAGTGTTA+TGG + chr6_4:69528761-69528780 Msa0994530:CDS 45.0%
GTGAACCATAACACTGTCGA+GGG - chr6_4:69528769-69528788 None:intergenic 45.0%
TGTGAACCATAACACTGTCG+AGG - chr6_4:69528770-69528789 None:intergenic 45.0%
GGACCATAGAACAGCAAATG+AGG - chr6_4:69528945-69528964 None:intergenic 45.0%
! TTGCTGTTCTATGGTCCATC+AGG + chr6_4:69528948-69528967 Msa0994530:CDS 45.0%
! AAAAAGACCTTTTCGGCACC+GGG - chr6_4:69529023-69529042 None:intergenic 45.0%
! GTTGATGTTTCAGGTGAAGG+TGG + chr6_4:69529303-69529322 Msa0994530:intron 45.0%
TGAAGGTGGAAAATAGGGCT+TGG + chr6_4:69529317-69529336 Msa0994530:CDS 45.0%
GGAAAATAGGGCTTGGAAAG+TGG + chr6_4:69529324-69529343 Msa0994530:CDS 45.0%
CAGACATTGCTCGCTAACTA+AGG - chr6_4:69529461-69529480 None:intergenic 45.0%
ATTGCTGTAGGATGAGAGGT+AGG + chr6_4:69529621-69529640 Msa0994530:intron 45.0%
GTTATTGAGTGGTTGTTGGG+TGG + chr6_4:69529779-69529798 Msa0994530:intron 45.0%
CCTACCAAGATTTGAGAGCT+TGG - chr6_4:69529820-69529839 None:intergenic 45.0%
CCAAGCTCTCAAATCTTGGT+AGG + chr6_4:69529817-69529836 Msa0994530:intron 45.0%
AGTAATACTGCAAGCCAAGG+TGG - chr6_4:69530634-69530653 None:intergenic 45.0%
TGCAGTAATACTGCAAGCCA+AGG - chr6_4:69530637-69530656 None:intergenic 45.0%
TGTTCTGCGGAGAGAATGTT+GGG - chr6_4:69530787-69530806 None:intergenic 45.0%
TTGTTCTGCGGAGAGAATGT+TGG - chr6_4:69530788-69530807 None:intergenic 45.0%
ACATTCTCTCCGCAGAACAA+TGG + chr6_4:69530788-69530807 Msa0994530:CDS 45.0%
AAGTCCATGCTTCATAAGGG+AGG + chr6_4:69531175-69531194 Msa0994530:intron 45.0%
AGTCCATGCTTCATAAGGGA+GGG + chr6_4:69531176-69531195 Msa0994530:intron 45.0%
AGCGAAACAAACTACTCCTC+TGG - chr6_4:69531397-69531416 None:intergenic 45.0%
!! TTGGAAGTGCTAAAAGGTGC+CGG - chr6_4:69531521-69531540 None:intergenic 45.0%
!! AGCCTATGAGGCTGATTTGT+GGG - chr6_4:69531644-69531663 None:intergenic 45.0%
! GGTGGATTCTCCATGCATTT+CGG - chr6_4:69531676-69531695 None:intergenic 45.0%
AGAATCCACCAAGCCAATGT+TGG + chr6_4:69531686-69531705 Msa0994530:intron 45.0%
GAATCCACCAAGCCAATGTT+GGG + chr6_4:69531687-69531706 Msa0994530:intron 45.0%
GTTGGGCATTATTGTTTGCC+AGG + chr6_4:69531704-69531723 Msa0994530:intron 45.0%
! GCTGCAACTTCCTTCTAGTT+TGG + chr6_4:69532063-69532082 Msa0994530:CDS 45.0%
GTGGAGATTACTGTTGGACA+CGG - chr6_4:69532153-69532172 None:intergenic 45.0%
TGGGGGAATTGTTTGCTTGT+CGG - chr6_4:69532290-69532309 None:intergenic 45.0%
CAAGCAAACAATTCCCCCAA+TGG + chr6_4:69532291-69532310 Msa0994530:CDS 45.0%
AAACAATTCCCCCAATGGAC+TGG + chr6_4:69532296-69532315 Msa0994530:CDS 45.0%
! AACAATTCCCCCAATGGACT+GGG + chr6_4:69532297-69532316 Msa0994530:CDS 45.0%
TATACTCCTCCCAGTCCATT+GGG - chr6_4:69532309-69532328 None:intergenic 45.0%
ATATACTCCTCCCAGTCCAT+TGG - chr6_4:69532310-69532329 None:intergenic 45.0%
TGAAGGAACAGAGCCCAAAA+AGG + chr6_4:69532353-69532372 Msa0994530:CDS 45.0%
! TCCTCCGGAGATCATTTTGA+AGG + chr6_4:69532596-69532615 Msa0994530:CDS 45.0%
ACCTTCAAAATGATCTCCGG+AGG - chr6_4:69532600-69532619 None:intergenic 45.0%
CCTATGCTCCTGGTTAAATG+AGG - chr6_4:69533018-69533037 None:intergenic 45.0%
! CCTCATTTAACCAGGAGCAT+AGG + chr6_4:69533015-69533034 Msa0994530:intron 45.0%
TCCTTCCTCATCGCAACATT+CGG + chr6_4:69533611-69533630 Msa0994530:CDS 45.0%
CATATGTGGGAATGAGAAGG+TGG - chr6_4:69533861-69533880 None:intergenic 45.0%
CACCTTCTCATTCCCACATA+TGG + chr6_4:69533859-69533878 Msa0994530:three_prime_UTR 45.0%
GTTTGGGTATTTACCAGGGG+CGG - chr6_4:69528062-69528081 None:intergenic 50.0%
!! TAAAGGAGTGTCAACGGGGA+GGG - chr6_4:69528625-69528644 None:intergenic 50.0%
!! ATAAAGGAGTGTCAACGGGG+AGG - chr6_4:69528626-69528645 None:intergenic 50.0%
! TGGATCGGATGTGTTGTTGC+AGG + chr6_4:69528902-69528921 Msa0994530:intron 50.0%
GCTCTTCTCCGCCAAATGTT+TGG + chr6_4:69528996-69529015 Msa0994530:CDS 50.0%
GGATGAGAGGTAGGCATAGA+AGG + chr6_4:69529630-69529649 Msa0994530:intron 50.0%
!! CTTGAGCACTGTTTTCAGGC+TGG + chr6_4:69530197-69530216 Msa0994530:intron 50.0%
CGCTTGGAGTCATTTCGATG+TGG - chr6_4:69530268-69530287 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG + chr6_4:69530272-69530291 Msa0994530:CDS 50.0%
GCACATTAAGACAACGGGAG+CGG - chr6_4:69530881-69530900 None:intergenic 50.0%
GGCAATAGCTGCTAACCGTA+TGG - chr6_4:69531234-69531253 None:intergenic 50.0%
GGCAATAGCTACTACCCGTA+TGG - chr6_4:69531319-69531338 None:intergenic 50.0%
TCCTTATGTGCTTCACCGAC+CGG + chr6_4:69531499-69531518 Msa0994530:intron 50.0%
!! AAGTGCTAAAAGGTGCCGGT+CGG - chr6_4:69531517-69531536 None:intergenic 50.0%
ATATCCTCTCTCCCTGACCA+AGG + chr6_4:69531601-69531620 Msa0994530:intron 50.0%
TATCCTCTCTCCCTGACCAA+GGG + chr6_4:69531602-69531621 Msa0994530:intron 50.0%
AGAAGGTCTACCCTTGGTCA+GGG - chr6_4:69531615-69531634 None:intergenic 50.0%
TAGAAGGTCTACCCTTGGTC+AGG - chr6_4:69531616-69531635 None:intergenic 50.0%
!! TGATTTGTGGGGGCACTAGA+AGG - chr6_4:69531632-69531651 None:intergenic 50.0%
!! CCTATGAGGCTGATTTGTGG+GGG - chr6_4:69531642-69531661 None:intergenic 50.0%
!! GCCTATGAGGCTGATTTGTG+GGG - chr6_4:69531643-69531662 None:intergenic 50.0%
!! CAGCCTATGAGGCTGATTTG+TGG - chr6_4:69531645-69531664 None:intergenic 50.0%
!! AATGCCCAACATTGGCTTGG+TGG - chr6_4:69531694-69531713 None:intergenic 50.0%
ATGCGAGCAGCCAAACTAGA+AGG - chr6_4:69532076-69532095 None:intergenic 50.0%
ATACTCCTCCCAGTCCATTG+GGG - chr6_4:69532308-69532327 None:intergenic 50.0%
GCTGACCAATTGCATTCCTC+CGG + chr6_4:69532581-69532600 Msa0994530:CDS 50.0%
GATCTCCGGAGGAATGCAAT+TGG - chr6_4:69532589-69532608 None:intergenic 50.0%
TTCAGCCGAATGTTGCGATG+AGG - chr6_4:69533619-69533638 None:intergenic 50.0%
CAATGGTGCTTTGCTTTCCC+AGG + chr6_4:69533643-69533662 Msa0994530:three_prime_UTR 50.0%
TGCGATTCTGCGACGGTCTA+GGG - chr6_4:69527958-69527977 None:intergenic 55.0%
CTGTGACTGCGATTCTGCGA+CGG - chr6_4:69527965-69527984 None:intergenic 55.0%
GAGAGTGAGCAGTCGAGCTT+CGG - chr6_4:69528016-69528035 None:intergenic 55.0%
TTCTATGGTCCATCAGGCGC+AGG + chr6_4:69528954-69528973 Msa0994530:CDS 55.0%
! GTTTTCTTGCCTGCGCCTGA+TGG - chr6_4:69528966-69528985 None:intergenic 55.0%
CTCCGCCAAATGTTTGGACC+CGG + chr6_4:69529002-69529021 Msa0994530:CDS 55.0%
CACCGGGTCCAAACATTTGG+CGG - chr6_4:69529007-69529026 None:intergenic 55.0%
TGGTTGTTGGGTGGGACTGT+GGG + chr6_4:69529788-69529807 Msa0994530:intron 55.0%
TCCAAGCGATGCAGGCTTTC+AGG + chr6_4:69530280-69530299 Msa0994530:CDS 55.0%
TCCTGAAAGCCTGCATCGCT+TGG - chr6_4:69530284-69530303 None:intergenic 55.0%
TACTGCAAGCCAAGGTGGAG+AGG - chr6_4:69530629-69530648 None:intergenic 55.0%
AGGCCCTCCCTTATGAAGCA+TGG - chr6_4:69531182-69531201 None:intergenic 55.0%
GGTCAGGGAGAGAGGATATC+AGG - chr6_4:69531600-69531619 None:intergenic 55.0%
GGCACTAGAAGGTCTACCCT+TGG - chr6_4:69531621-69531640 None:intergenic 55.0%
CCCCCACAAATCAGCCTCAT+AGG + chr6_4:69531639-69531658 Msa0994530:intron 55.0%
!! AATTCCCCCAATGGACTGGG+AGG + chr6_4:69532300-69532319 Msa0994530:CDS 55.0%
TACTCCTCCCAGTCCATTGG+GGG - chr6_4:69532307-69532326 None:intergenic 55.0%
GCCGAATGTTGCGATGAGGA+AGG - chr6_4:69533615-69533634 None:intergenic 55.0%
CTGCGATTCTGCGACGGTCT+AGG - chr6_4:69527959-69527978 None:intergenic 60.0%
GCAGTCACAGCCATCCACCT+CGG + chr6_4:69527975-69527994 Msa0994530:five_prime_UTR 60.0%
GCAGTCGAGCTTCGGTGGAA+CGG - chr6_4:69528008-69528027 None:intergenic 60.0%
AGTGAGCAGTCGAGCTTCGG+TGG - chr6_4:69528013-69528032 None:intergenic 60.0%
CGGATGGAGTGGAGCAGAGA+TGG - chr6_4:69528042-69528061 None:intergenic 60.0%
TTTACCAGGGGCGGATGGAG+TGG - chr6_4:69528053-69528072 None:intergenic 60.0%
GGGTATTTACCAGGGGCGGA+TGG - chr6_4:69528058-69528077 None:intergenic 60.0%
! CGGCACCGGGTCCAAACATT+TGG - chr6_4:69529010-69529029 None:intergenic 60.0%
! GTTTGGACCCGGTGCCGAAA+AGG + chr6_4:69529013-69529032 Msa0994530:CDS 60.0%
GTGGTTGTTGGGTGGGACTG+TGG + chr6_4:69529787-69529806 Msa0994530:intron 60.0%
GCCGGTCGGTGAAGCACATA+AGG - chr6_4:69531503-69531522 None:intergenic 60.0%
CTACCCTTGGTCAGGGAGAG+AGG - chr6_4:69531608-69531627 None:intergenic 60.0%
CAAGGCGCATCCTATGCTCC+TGG - chr6_4:69533028-69533047 None:intergenic 60.0%
! CAGGAGCATAGGATGCGCCT+TGG + chr6_4:69533026-69533045 Msa0994530:intron 60.0%
GTCGAGCTTCGGTGGAACGG+AGG - chr6_4:69528005-69528024 None:intergenic 65.0%
CGGAGGAGCTCCGAGGTGGA+TGG - chr6_4:69527988-69528007 None:intergenic 70.0%
GGAACGGAGGAGCTCCGAGG+TGG - chr6_4:69527992-69528011 None:intergenic 70.0%
GGTGGAACGGAGGAGCTCCG+AGG - chr6_4:69527995-69528014 None:intergenic 70.0%
TGCTCCACTCCATCCGCCCC+TGG + chr6_4:69528046-69528065 Msa0994530:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 69527811 69533885 69527811 ID=Msa0994530;Name=Msa0994530
chr6_4 mRNA 69527811 69533885 69527811 ID=Msa0994530-mRNA-1;Parent=Msa0994530;Name=Msa0994530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=318|1|1|1|0.90|0.83|12|248|354
chr6_4 exon 69527811 69528067 69527811 ID=Msa0994530-mRNA-1:exon:12792;Parent=Msa0994530-mRNA-1
chr6_4 exon 69528674 69528818 69528674 ID=Msa0994530-mRNA-1:exon:12793;Parent=Msa0994530-mRNA-1
chr6_4 exon 69528924 69529034 69528924 ID=Msa0994530-mRNA-1:exon:12794;Parent=Msa0994530-mRNA-1
chr6_4 exon 69529316 69529348 69529316 ID=Msa0994530-mRNA-1:exon:12795;Parent=Msa0994530-mRNA-1
chr6_4 exon 69530215 69530383 69530215 ID=Msa0994530-mRNA-1:exon:12796;Parent=Msa0994530-mRNA-1
chr6_4 exon 69530745 69530926 69530745 ID=Msa0994530-mRNA-1:exon:12797;Parent=Msa0994530-mRNA-1
chr6_4 exon 69532025 69532161 69532025 ID=Msa0994530-mRNA-1:exon:12798;Parent=Msa0994530-mRNA-1
chr6_4 exon 69532276 69532374 69532276 ID=Msa0994530-mRNA-1:exon:12799;Parent=Msa0994530-mRNA-1
chr6_4 exon 69532548 69532617 69532548 ID=Msa0994530-mRNA-1:exon:12800;Parent=Msa0994530-mRNA-1
chr6_4 exon 69532712 69532786 69532712 ID=Msa0994530-mRNA-1:exon:12801;Parent=Msa0994530-mRNA-1
chr6_4 exon 69533029 69533074 69533029 ID=Msa0994530-mRNA-1:exon:12802;Parent=Msa0994530-mRNA-1
chr6_4 exon 69533579 69533885 69533579 ID=Msa0994530-mRNA-1:exon:12803;Parent=Msa0994530-mRNA-1
chr6_4 five_prime_UTR 69527811 69528067 69527811 ID=Msa0994530-mRNA-1:five_prime_utr;Parent=Msa0994530-mRNA-1
chr6_4 five_prime_UTR 69528674 69528734 69528674 ID=Msa0994530-mRNA-1:five_prime_utr;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69528735 69528818 69528735 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69528924 69529034 69528924 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69529316 69529348 69529316 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69530215 69530383 69530215 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69530745 69530926 69530745 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69532025 69532161 69532025 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69532276 69532374 69532276 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69532548 69532617 69532548 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69532712 69532786 69532712 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69533029 69533074 69533029 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 CDS 69533579 69533637 69533579 ID=Msa0994530-mRNA-1:cds;Parent=Msa0994530-mRNA-1
chr6_4 three_prime_UTR 69533638 69533885 69533638 ID=Msa0994530-mRNA-1:three_prime_utr;Parent=Msa0994530-mRNA-1
Gene Sequence

>Msa0994530

ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTCGACAGTGTTATGGTTCACAACGACATTGCTCATAATCTCAAGAAATTGGTCACTGAACATGATTGTCCTCATTTGCTGTTCTATGGTCCATCAGGCGCAGGCAAGAAAACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCTTGGAAAGTGGATGCTGGAAGTAGATCTATAGATTTAGAGCTGACTACATTATCAAGTGCGAACCACATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTTCTTAATGATGTTGACAAACTCTCAAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGCGCTTATTGCAGATTAGTTCTATGTTGCAATAGCTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAATGTGCGAATTAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTGGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACCGACAAGCAAACAATTCCCCCAATGGACTGGGAGGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTGACCAATTGCATTCCTCCGGAGATCATTTTGAAGAGACTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTGAAGCATGAAATCTGCCATTGGGCAGCATATTATGAGCATAGGATGCGCCTTGGACAGAAAGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTTATGAGCGTCTACAAGTCCTTCCTCATCGCAACATTCGGCTGA

Protein sequence

>Msa0994530

MLWVDKYRPKTLDSVMVHNDIAHNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG*