AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0895010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895010 MtrunA17_Chr6g0478631 98.870 354 4 0 1 354 1 354 0.0 732
Msa0895010 MtrunA17_Chr6g0460841 96.610 354 12 0 1 354 1 354 0.0 721
Msa0895010 MtrunA17_Chr5g0404521 34.066 273 161 4 2 269 413 671 7.58e-50 177
Msa0895010 MtrunA17_Chr3g0145801 30.319 376 228 8 2 347 421 792 4.80e-46 167
Msa0895010 MtrunA17_Chr3g0124791 25.072 347 217 6 2 341 33 343 1.54e-33 127
Msa0895010 MtrunA17_Chr3g0125031 32.218 239 125 4 3 234 11 219 3.46e-33 125
Msa0895010 MtrunA17_Chr4g0057341 30.556 216 118 4 3 217 17 201 1.14e-24 102
Msa0895010 MtrunA17_Chr5g0404541 43.750 64 36 0 283 346 2 65 9.20e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895010 AT5G27740.1 83.898 354 57 0 1 354 1 354 0.0 646
Msa0895010 AT1G21690.1 33.333 234 119 4 3 229 11 214 8.77e-33 125
Msa0895010 AT1G21690.3 32.636 239 124 4 3 234 11 219 1.09e-32 125
Msa0895010 AT1G21690.4 32.051 234 115 4 3 229 11 207 4.20e-30 117
Msa0895010 AT1G77470.1 27.347 245 148 3 3 247 41 255 2.28e-29 116
Msa0895010 AT1G21690.2 32.636 239 112 6 3 234 11 207 2.69e-29 115
Msa0895010 AT1G63160.1 27.126 247 146 6 3 248 17 230 7.10e-23 98.2

Find 107 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCAATAGTTTCTCAATTT+TGG 0.120613 6_1:-81705290 Msa0895010:five_prime_UTR
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6_1:-81702843 Msa0895010:CDS
CATAACACTGTCGAGGGTTT+TGG 0.212335 6_1:+81704369 None:intergenic
AGAAATCAAATCGGAATTTA+AGG 0.217343 6_1:-81701019 Msa0895010:CDS
TGCCCTCATTTGCTGTTCTA+TGG 0.234880 6_1:-81704184 Msa0895010:CDS
TGCTCAAAATCTCAAGAAAT+TGG 0.257130 6_1:-81704332 Msa0895010:intron
ATGGAAGATTTCTGATGTTT+TGG 0.259387 6_1:-81699353 Msa0895010:three_prime_UTR
TTCAGGTGAAGGTGGAAAAT+AGG 0.275227 6_1:-81703812 Msa0895010:intron
CGGCACCGGGTCCAAACATT+TGG 0.299333 6_1:+81704116 None:intergenic
TCTCTCATCTTCTCAACTTA+AGG 0.307732 6_1:-81699408 Msa0895010:three_prime_UTR
TTTCTTCCCTTTAGTATCAA+TGG 0.323241 6_1:+81702772 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.324156 6_1:-81702761 Msa0895010:intron
GCTCTTCTCCGCCAAATGTT+TGG 0.325475 6_1:-81704127 Msa0895010:CDS
GCTGCAACTTCCTTCTAGTT+TGG 0.326964 6_1:-81701057 Msa0895010:CDS
CACCTTCTCATTCCCACATA+TGG 0.327498 6_1:-81699264 Msa0895010:three_prime_UTR
CTGCGATTCTGCGACGGTCT+AGG 0.328997 6_1:+81705178 None:intergenic
TTCTTCCCTTTAGTATCAAT+GGG 0.348124 6_1:+81702773 None:intergenic
TCAGGTGAAGGTGGAAAATA+GGG 0.353576 6_1:-81703811 Msa0895010:intron
TTATGAGCTATTGAGGAAAC+TGG 0.357086 6_1:-81700406 Msa0895010:CDS
CTATACATTGGCAGCATTTG+TGG 0.358356 6_1:-81699558 Msa0895010:intron
GCAAGTCTCAAATGACAATA+TGG 0.375769 6_1:+81700992 None:intergenic
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6_1:+81702842 None:intergenic
CTATTTACCTGTTCTTCACT+TGG 0.411342 6_1:+81702211 None:intergenic
TATACTCCTCCCAGTCCATT+GGG 0.413295 6_1:+81700817 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6_1:-81700770 Msa0895010:intron
GACTTCTTTATGAGCTATTG+AGG 0.419698 6_1:-81700413 Msa0895010:CDS
AATACAATAAAATTGTATCC+TGG 0.422379 6_1:+81699462 None:intergenic
GAGAGTGAGCAGTCGAGCTT+CGG 0.427198 6_1:+81705121 None:intergenic
CTTCAAATTGAAACCATATG+TGG 0.430907 6_1:+81699251 None:intergenic
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6_1:-81702807 Msa0895010:CDS
TGTTCTGCGGAGAGAATGTT+GGG 0.433518 6_1:+81702339 None:intergenic
TCCTTCCTCATCGCAACATT+CGG 0.436381 6_1:-81699512 Msa0895010:CDS
CAAAACCCTCGACAGTGTTA+TGG 0.439317 6_1:-81704368 Msa0895010:CDS
TGCGATTCTGCGACGGTCTA+GGG 0.439561 6_1:+81705179 None:intergenic
TAATGCACCAAGTGAAGAAC+AGG 0.440498 6_1:-81702218 Msa0895010:intron
GTTTGGACCCGGTGCCGAAA+AGG 0.441219 6_1:-81704110 Msa0895010:intron
CAGTTCATTGGTAAGAAAGA+AGG 0.442426 6_1:-81701080 Msa0895010:CDS
CGGATGGAGTGGAGCAGAGA+TGG 0.443493 6_1:+81705095 None:intergenic
TTGCTGTTCTATGGTCCATC+AGG 0.446874 6_1:-81704175 Msa0895010:CDS
CAATGGTGCTTTGCTTTCCC+AGG 0.449651 6_1:-81699480 Msa0895010:three_prime_UTR
GGAAAATAGGGCTTGGAAAG+TGG 0.454758 6_1:-81703799 Msa0895010:CDS
ATGCGAGCAGCCAAACTAGA+AGG 0.460248 6_1:+81701047 None:intergenic
AATTCGCACATTAAGACAAC+GGG 0.461988 6_1:+81702240 None:intergenic
TTTAGGTTGTTTCAAGTTCG+AGG 0.467965 6_1:-81700580 Msa0895010:intron
AATAGACCCATTGATACTAA+AGG 0.470695 6_1:-81702779 Msa0895010:CDS
ATACAATAAAATTGTATCCT+GGG 0.471662 6_1:+81699463 None:intergenic
ATAGACCCATTGATACTAAA+GGG 0.485089 6_1:-81702778 Msa0895010:CDS
TGCTCCACTCCATCCGCCCC+TGG 0.487222 6_1:-81705088 Msa0895010:intron
ATTGATACTAAAGGGAAGAA+AGG 0.491720 6_1:-81702770 Msa0895010:CDS
CTCCGCCAAATGTTTGGACC+CGG 0.492853 6_1:-81704121 Msa0895010:CDS
ATATACTCCTCCCAGTCCAT+TGG 0.499233 6_1:+81700816 None:intergenic
ATTGTTTGCTTGTCGGTGAA+AGG 0.508946 6_1:+81700843 None:intergenic
AGTGAGCAGTCGAGCTTCGG+TGG 0.509560 6_1:+81705124 None:intergenic
TAAAGAGAGCAAAGATGTTG+TGG 0.510082 6_1:-81704408 Msa0895010:exon
AAAGAGAGCAAAGATGTTGT+GGG 0.510264 6_1:-81704407 Msa0895010:exon
GCTGACCAATTGCATTCCTC+CGG 0.512269 6_1:-81700542 Msa0895010:CDS
TGAAGGTGGAAAATAGGGCT+TGG 0.512888 6_1:-81703806 Msa0895010:CDS
TTGAAGAAAGAAGCAGAAGA+AGG 0.513503 6_1:-81704431 Msa0895010:five_prime_UTR
GGGTATTTACCAGGGGCGGA+TGG 0.515387 6_1:+81705079 None:intergenic
AGGCAAGAAAACACTAATCA+TGG 0.515883 6_1:-81704149 Msa0895010:CDS
GATCTCCGGAGGAATGCAAT+TGG 0.520414 6_1:+81700537 None:intergenic
TTTACCTTCAAAATGATCTC+CGG 0.522303 6_1:+81700523 None:intergenic
GGACCATAGAACAGCAAATG+AGG 0.524326 6_1:+81704181 None:intergenic
TGAAGCATGAAATCTGCCAT+TGG 0.524375 6_1:-81700374 Msa0895010:CDS
TTGTTCTGCGGAGAGAATGT+TGG 0.530873 6_1:+81702338 None:intergenic
CGGAGGAGCTCCGAGGTGGA+TGG 0.531079 6_1:+81705149 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6_1:-81701079 Msa0895010:CDS
GAAGCATGAAATCTGCCATT+GGG 0.532158 6_1:-81700373 Msa0895010:CDS
TTTACCAGGGGCGGATGGAG+TGG 0.532233 6_1:+81705084 None:intergenic
GCACATTAAGACAACGGGAG+CGG 0.533938 6_1:+81702245 None:intergenic
CACCGGGTCCAAACATTTGG+CGG 0.535929 6_1:+81704119 None:intergenic
TATGCATACTACAATCATCA+TGG 0.539465 6_1:-81699372 Msa0895010:three_prime_UTR
CAGGAGCATAGGATGCGCCT+TGG 0.541208 6_1:-81700100 Msa0895010:CDS
CCTCATTTAACCAGGAGCAT+AGG 0.541849 6_1:-81700111 Msa0895010:intron
GAAATGACTCCAAGCGATGC+AGG 0.543849 6_1:-81702851 Msa0895010:CDS
TTCTATGGTCCATCAGGCGC+AGG 0.544328 6_1:-81704169 Msa0895010:CDS
AATTGCATCTGACATAATGA+AGG 0.551340 6_1:-81700787 Msa0895010:CDS
TTCAAATTGAAACCATATGT+GGG 0.554660 6_1:+81699252 None:intergenic
GCAGTCGAGCTTCGGTGGAA+CGG 0.558506 6_1:+81705129 None:intergenic
CGCTTGGAGTCATTTCGATG+TGG 0.565712 6_1:+81702858 None:intergenic
ACATTCTCTCCGCAGAACAA+TGG 0.565832 6_1:-81702335 Msa0895010:CDS
GCATAGCAGAGAAATCAAAT+CGG 0.583422 6_1:-81701028 Msa0895010:CDS
AATCAAATCGGAATTTAAGG+AGG 0.587176 6_1:-81701016 Msa0895010:CDS
CATATGTGGGAATGAGAAGG+TGG 0.593706 6_1:+81699265 None:intergenic
TGTATTTCTCCATTGTTCTG+CGG 0.594797 6_1:+81702326 None:intergenic
CTGTGACTGCGATTCTGCGA+CGG 0.607491 6_1:+81705172 None:intergenic
GACCATAGAACAGCAAATGA+GGG 0.618790 6_1:+81704182 None:intergenic
GTTGATGTTTCAGGTGAAGG+TGG 0.620590 6_1:-81703820 Msa0895010:intron
GTCGAGCTTCGGTGGAACGG+AGG 0.622423 6_1:+81705132 None:intergenic
GTTTGGGTATTTACCAGGGG+CGG 0.623216 6_1:+81705075 None:intergenic
GTGAACCATAACACTGTCGA+GGG 0.625900 6_1:+81704363 None:intergenic
ACCTTCAAAATGATCTCCGG+AGG 0.628271 6_1:+81700526 None:intergenic
ATCAAATCGGAATTTAAGGA+GGG 0.630327 6_1:-81701015 Msa0895010:CDS
GCCGAATGTTGCGATGAGGA+AGG 0.630554 6_1:+81699511 None:intergenic
TTACATAATATGCTGCCCAA+TGG 0.630713 6_1:+81700358 None:intergenic
GGAACGGAGGAGCTCCGAGG+TGG 0.641257 6_1:+81705145 None:intergenic
TACTCCTCCCAGTCCATTGG+GGG 0.645004 6_1:+81700819 None:intergenic
ATACTCCTCCCAGTCCATTG+GGG 0.647707 6_1:+81700818 None:intergenic
TAATTCGCACATTAAGACAA+CGG 0.648193 6_1:+81702239 None:intergenic
TGTGAACCATAACACTGTCG+AGG 0.649165 6_1:+81704362 None:intergenic
TTCAGCCGAATGTTGCGATG+AGG 0.657182 6_1:+81699507 None:intergenic
GCAGTCACAGCCATCCACCT+CGG 0.659169 6_1:-81705159 Msa0895010:five_prime_UTR
GGTGGAACGGAGGAGCTCCG+AGG 0.666148 6_1:+81705142 None:intergenic
ACATTCGGCTGAAGAAACAA+TGG 0.670874 6_1:-81699497 Msa0895010:exon
ATATGTGGGAATGAGAAGGT+GGG 0.682689 6_1:+81699266 None:intergenic
GTGGAGCTTACTGTTGGACA+CGG 0.688177 6_1:+81700970 None:intergenic
AACCATATGTGGGAATGAGA+AGG 0.704061 6_1:+81699262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTGAAAAAGAAAA+AGG + chr6_1:81699344-81699363 None:intergenic 10.0%
!!! AAAAGTTTTAAATTTTTGTT+TGG - chr6_1:81700342-81700361 Msa0895010:intron 10.0%
!!! TATTTTAAGATAATAAAAGA+AGG - chr6_1:81701883-81701902 Msa0895010:intron 10.0%
!!! ATATTTTATTTTCTATACAT+TGG - chr6_1:81705013-81705032 Msa0895010:intron 10.0%
!!! AATTTTATTGTATTAATGAT+TGG - chr6_1:81705130-81705149 Msa0895010:five_prime_UTR 10.0%
!! AAAAATTGAAAAGAAAGTTT+GGG + chr6_1:81699527-81699546 None:intergenic 15.0%
!! AAAAAATTGAAAAGAAAGTT+TGG + chr6_1:81699528-81699547 None:intergenic 15.0%
!! CTAAAAATTGAGTTAAAAAA+GGG + chr6_1:81699683-81699702 None:intergenic 15.0%
!! TCTAAAAATTGAGTTAAAAA+AGG + chr6_1:81699684-81699703 None:intergenic 15.0%
!!! TTTTAAATTTTTGTTTGGAT+CGG - chr6_1:81700347-81700366 Msa0895010:intron 15.0%
!! AGAAAAAACAAACATTTATT+TGG - chr6_1:81701507-81701526 Msa0895010:intron 15.0%
!! ATAATATGCTATTATACTTT+AGG - chr6_1:81703986-81704005 Msa0895010:intron 15.0%
!! TGAAAAATAAGAAGTAAAAA+TGG + chr6_1:81704424-81704443 None:intergenic 15.0%
!! ATATATTGATATATAAGTCT+TGG - chr6_1:81704964-81704983 Msa0895010:intron 15.0%
!! TATATTGATATATAAGTCTT+GGG - chr6_1:81704965-81704984 Msa0895010:intron 15.0%
!! GTCTAGAAAAACTAAAAAAA+TGG - chr6_1:81699271-81699290 Msa0895010:three_prime_UTR 20.0%
!! AAAGAAAAAGGAAAGTTAAT+AGG + chr6_1:81699332-81699351 None:intergenic 20.0%
!!! CATCTAACTAAAATTACTTT+TGG + chr6_1:81700603-81700622 None:intergenic 20.0%
!!! TGTTGCAAAGTTTTATTTAA+TGG - chr6_1:81700851-81700870 Msa0895010:intron 20.0%
!!! TTTTGTAAAAAACAAATCAG+TGG + chr6_1:81701040-81701059 None:intergenic 20.0%
!!! TGTTGTTTGTAAGAATAAAT+AGG - chr6_1:81701189-81701208 Msa0895010:intron 20.0%
!! TGTAAGAATAAATAGGAAAA+AGG - chr6_1:81701196-81701215 Msa0895010:intron 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG - chr6_1:81701776-81701795 Msa0895010:intron 20.0%
!! GAAAAAAAATTCCAAAACAT+AGG + chr6_1:81702443-81702462 None:intergenic 20.0%
!! TTCAAAACATGAAAACTATA+AGG - chr6_1:81702753-81702772 Msa0895010:intron 20.0%
!!! GTTCTTAAATTTTGATGTTT+TGG + chr6_1:81702803-81702822 None:intergenic 20.0%
!!! CTAGAAAAGCATTTTATAAT+CGG + chr6_1:81703242-81703261 None:intergenic 20.0%
!! GATCATCTTTATTGAATATT+TGG - chr6_1:81703450-81703469 Msa0895010:intron 20.0%
!!! CATTAACTAGTTTAATATCA+AGG + chr6_1:81704383-81704402 None:intergenic 20.0%
!! CTTGATATTAAACTAGTTAA+TGG - chr6_1:81704381-81704400 Msa0895010:CDS 20.0%
!!! ACTTCTTATTTTTCAAAGTA+AGG - chr6_1:81704429-81704448 Msa0895010:five_prime_UTR 20.0%
!!! GTATTCTTTATAATTTGCAA+TGG + chr6_1:81704600-81704619 None:intergenic 20.0%
!!! CTACTTATTTTCATTTACTT+TGG + chr6_1:81704669-81704688 None:intergenic 20.0%
!! TTTGTAAGTAAATCATAGTA+TGG + chr6_1:81704725-81704744 None:intergenic 20.0%
!! TTTGATAGATTAAACATGTT+AGG - chr6_1:81704759-81704778 Msa0895010:intron 20.0%
!! TTGATAGATTAAACATGTTA+GGG - chr6_1:81704760-81704779 Msa0895010:intron 20.0%
!! CTAGAGTAAAAAAAAATAGA+GGG + chr6_1:81704907-81704926 None:intergenic 20.0%
!!! TCTAGAGTAAAAAAAAATAG+AGG + chr6_1:81704908-81704927 None:intergenic 20.0%
!! ATACAATAAAATTGTATCCT+GGG + chr6_1:81705123-81705142 None:intergenic 20.0%
!! AATACAATAAAATTGTATCC+TGG + chr6_1:81705124-81705143 None:intergenic 20.0%
! GATTTAAGCTGTTAATGAAA+AGG - chr6_1:81699624-81699643 Msa0895010:intron 25.0%
!!! ATTGATTTTGTCTGATTTCA+TGG - chr6_1:81699886-81699905 Msa0895010:intron 25.0%
!! TTGATTTTGTCTGATTTCAT+GGG - chr6_1:81699887-81699906 Msa0895010:intron 25.0%
!!! TCTGAATTTTGAAAGAATGT+TGG - chr6_1:81700543-81700562 Msa0895010:CDS 25.0%
! TCAACAAAGACAATTTAGAA+TGG + chr6_1:81700748-81700767 None:intergenic 25.0%
!! AAGAAAAGAGAAGTATGAAA+AGG + chr6_1:81700824-81700843 None:intergenic 25.0%
! TCTTAACATTTGTATAGGTT+AGG - chr6_1:81700880-81700899 Msa0895010:intron 25.0%
! AGTGGTCAATAATAATATTC+AGG + chr6_1:81700944-81700963 None:intergenic 25.0%
! ACTCTTCTCTATCAATATAT+CGG + chr6_1:81700982-81701001 None:intergenic 25.0%
! AAGTATAATACGATAGAAAC+AGG + chr6_1:81701416-81701435 None:intergenic 25.0%
! TATACTTATGACAGTTGAAT+TGG - chr6_1:81701429-81701448 Msa0895010:intron 25.0%
! ATACTTATGACAGTTGAATT+GGG - chr6_1:81701430-81701449 Msa0895010:intron 25.0%
! AATAAAAGAAGGAATCTTCA+TGG - chr6_1:81701894-81701913 Msa0895010:intron 25.0%
! CTCAAATCATGAAAACTATA+AGG - chr6_1:81702665-81702684 Msa0895010:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_1:81702676-81702695 Msa0895010:intron 25.0%
!!! GTTCTTGAATTTTGATGTTT+TGG + chr6_1:81702718-81702737 None:intergenic 25.0%
! AAACATCAAAATTCAAGAAC+TGG - chr6_1:81702718-81702737 Msa0895010:intron 25.0%
! AAAACTATAAGGAAACCATA+CGG - chr6_1:81702676-81702695 Msa0895010:intron 25.0%
! AAAATGCAGATTAAGAAACT+TGG - chr6_1:81703199-81703218 Msa0895010:intron 25.0%
! AGAAATCAAATCGGAATTTA+AGG - chr6_1:81703564-81703583 Msa0895010:intron 25.0%
!! TATCAAAAGCAAACCTTTTT+GGG + chr6_1:81703829-81703848 None:intergenic 25.0%
! TGGACAAATATTACAAATGT+TGG - chr6_1:81704789-81704808 Msa0895010:intron 25.0%
! GGACAAATATTACAAATGTT+GGG - chr6_1:81704790-81704809 Msa0895010:intron 25.0%
! TTTACACGAAATTCTGATAT+AGG - chr6_1:81704881-81704900 Msa0895010:intron 25.0%
!! TATAGCAATTGCTTTATTCA+AGG - chr6_1:81704934-81704953 Msa0895010:intron 25.0%
! CAATAGTTTCTCAATTTTGG+CGG - chr6_1:81699296-81699315 Msa0895010:three_prime_UTR 30.0%
!! AATAGTTTCTCAATTTTGGC+GGG - chr6_1:81699297-81699316 Msa0895010:three_prime_UTR 30.0%
! TGATTTTGTCTGATTTCATG+GGG - chr6_1:81699888-81699907 Msa0895010:intron 30.0%
TAGATAAAGGAATGTCAACA+GGG + chr6_1:81700083-81700102 None:intergenic 30.0%
ATAGATAAAGGAATGTCAAC+AGG + chr6_1:81700084-81700103 None:intergenic 30.0%
TGTTGACATTCCTTTATCTA+TGG - chr6_1:81700083-81700102 Msa0895010:CDS 30.0%
TGCTCAAAATCTCAAGAAAT+TGG - chr6_1:81700251-81700270 Msa0895010:intron 30.0%
! GTGACAAAAAAAGACCTTTT+CGG + chr6_1:81700490-81700509 None:intergenic 30.0%
ATTGTCTTTGTTGATGTTTC+AGG - chr6_1:81700754-81700773 Msa0895010:intron 30.0%
AGCACTCTTAACATTTGTAT+AGG - chr6_1:81700875-81700894 Msa0895010:intron 30.0%
ATTTCAGTAAACATTGCTGT+AGG - chr6_1:81701073-81701092 Msa0895010:CDS 30.0%
GGTTTCACGAAGAATTATAA+AGG + chr6_1:81701334-81701353 None:intergenic 30.0%
!!! GTTTGTTTTTTCTGAGTTGA+AGG + chr6_1:81701500-81701519 None:intergenic 30.0%
AATATCATTGTCTTGATCCT+TGG - chr6_1:81701545-81701564 Msa0895010:intron 30.0%
! AAAATGTAGTGCACTGATAT+TGG + chr6_1:81701576-81701595 None:intergenic 30.0%
TGTATAGTGAACTGAATCAT+TGG - chr6_1:81701599-81701618 Msa0895010:intron 30.0%
! TGAATCATTGGTGTCTTATT+TGG - chr6_1:81701611-81701630 Msa0895010:intron 30.0%
AATAGACCCATTGATACTAA+AGG - chr6_1:81701804-81701823 Msa0895010:intron 30.0%
ATAGACCCATTGATACTAAA+GGG - chr6_1:81701805-81701824 Msa0895010:intron 30.0%
TTCTTCCCTTTAGTATCAAT+GGG + chr6_1:81701813-81701832 None:intergenic 30.0%
TTTCTTCCCTTTAGTATCAA+TGG + chr6_1:81701814-81701833 None:intergenic 30.0%
ATTGATACTAAAGGGAAGAA+AGG - chr6_1:81701813-81701832 Msa0895010:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG - chr6_1:81701822-81701841 Msa0895010:intron 30.0%
AGAAAGGATTTAAAGGTAAC+CGG - chr6_1:81701829-81701848 Msa0895010:intron 30.0%
AGTTTAACAACAAAAACAGC+CGG + chr6_1:81701851-81701870 None:intergenic 30.0%
TGACTGTGTATAATGATGTT+TGG - chr6_1:81701992-81702011 Msa0895010:intron 30.0%
TTTACCTGTGTAATGCTTTA+AGG - chr6_1:81702030-81702049 Msa0895010:intron 30.0%
TAATTCGCACATTAAGACAA+CGG + chr6_1:81702347-81702366 None:intergenic 30.0%
AACAGATTCCATTATTTCCT+TGG + chr6_1:81702419-81702438 None:intergenic 30.0%
TATAAGTCCATGCTTCATAA+GGG - chr6_1:81702632-81702651 Msa0895010:intron 30.0%
! AGTTTTCATGATTTGAGCTT+AGG + chr6_1:81702662-81702681 None:intergenic 30.0%
AAACTATAAGGAAACCATAC+GGG - chr6_1:81702677-81702696 Msa0895010:intron 30.0%
! GTAGAATGTCTTGTTAACTT+GGG + chr6_1:81702884-81702903 None:intergenic 30.0%
! AGTAGAATGTCTTGTTAACT+TGG + chr6_1:81702885-81702904 None:intergenic 30.0%
!! AAGACATTCTACTGACTTAT+TGG - chr6_1:81702892-81702911 Msa0895010:CDS 30.0%
CAATATTAAGCATGTTCTCT+GGG + chr6_1:81702921-81702940 None:intergenic 30.0%
TCAATATTAAGCATGTTCTC+TGG + chr6_1:81702922-81702941 None:intergenic 30.0%
AAGGAATCTTACATAGGATT+GGG + chr6_1:81702947-81702966 None:intergenic 30.0%
TAAGGAATCTTACATAGGAT+TGG + chr6_1:81702948-81702967 None:intergenic 30.0%
ATCAACATTCTTAGGAGAAA+TGG + chr6_1:81703009-81703028 None:intergenic 30.0%
CTGTCATAATCAACATTCTT+AGG + chr6_1:81703017-81703036 None:intergenic 30.0%
TGAAATAATTCCGAAATGCA+TGG - chr6_1:81703126-81703145 Msa0895010:intron 30.0%
ATTAAGAAACTTGGAAAGGA+AGG - chr6_1:81703208-81703227 Msa0895010:intron 30.0%
! TGCTTTTCTAGATATACTGA+AGG - chr6_1:81703251-81703270 Msa0895010:intron 30.0%
TGATATTACTTTCTGCGATT+TGG - chr6_1:81703278-81703297 Msa0895010:intron 30.0%
! TTCTAAGGATTATATCTGCT+TGG - chr6_1:81703311-81703330 Msa0895010:intron 30.0%
TTAACATCCAACTTATAGAG+TGG + chr6_1:81703377-81703396 None:intergenic 30.0%
TGAATATTTGGAAATCCATG+TGG - chr6_1:81703462-81703481 Msa0895010:intron 30.0%
! GTTGAAGTTTTACAGTTCAT+TGG - chr6_1:81703491-81703510 Msa0895010:intron 30.0%
AGTTCATTGGTAAGAAAGAA+GGG - chr6_1:81703504-81703523 Msa0895010:intron 30.0%
AATCAAATCGGAATTTAAGG+AGG - chr6_1:81703567-81703586 Msa0895010:intron 30.0%
ATCAAATCGGAATTTAAGGA+GGG - chr6_1:81703568-81703587 Msa0895010:intron 30.0%
ACATGCTTCCAATTTAATCT+GGG - chr6_1:81703634-81703653 Msa0895010:intron 30.0%
TTATGCATCCCAGATTAAAT+TGG + chr6_1:81703645-81703664 None:intergenic 30.0%
! CTTCTCAAAGCTTTTCTTTA+AGG - chr6_1:81703681-81703700 Msa0895010:intron 30.0%
!! TCAAAGCTTTTCTTTAAGGA+AGG - chr6_1:81703685-81703704 Msa0895010:intron 30.0%
AATTGCATCTGACATAATGA+AGG - chr6_1:81703796-81703815 Msa0895010:intron 30.0%
! GTATCAAAAGCAAACCTTTT+TGG + chr6_1:81703830-81703849 None:intergenic 30.0%
AGTTGACAAAACAATCAAGT+AGG + chr6_1:81703922-81703941 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+CGG + chr6_1:81704063-81704082 None:intergenic 30.0%
TTGGGTAAAACATATACAGA+AGG + chr6_1:81704325-81704344 None:intergenic 30.0%
AGTTTAATATCAAGGCAATG+AGG + chr6_1:81704375-81704394 None:intergenic 30.0%
! AAAGCAATTTTTCACATCGA+AGG - chr6_1:81704510-81704529 Msa0895010:intron 30.0%
ATCTGAATGTGTGAAATAGT+TGG - chr6_1:81704540-81704559 Msa0895010:intron 30.0%
TCTGAATGTGTGAAATAGTT+GGG - chr6_1:81704541-81704560 Msa0895010:intron 30.0%
CAAATTAAGGATGCAATTGA+TGG + chr6_1:81704624-81704643 None:intergenic 30.0%
! ATTTACTTTGGAGACAAACT+AGG + chr6_1:81704657-81704676 None:intergenic 30.0%
AGCATAGAAAATGCAAATTC+AGG - chr6_1:81704844-81704863 Msa0895010:intron 30.0%
GCATAGAAAATGCAAATTCA+GGG - chr6_1:81704845-81704864 Msa0895010:intron 30.0%
ATCAGCAAGCAAATATTGTA+TGG + chr6_1:81704992-81705011 None:intergenic 30.0%
TATGCATACTACAATCATCA+TGG - chr6_1:81705211-81705230 Msa0895010:five_prime_UTR 30.0%
! ATGGAAGATTTCTGATGTTT+TGG - chr6_1:81705230-81705249 Msa0895010:five_prime_UTR 30.0%
! GCGCAATAGTTTCTCAATTT+TGG - chr6_1:81699293-81699312 Msa0895010:three_prime_UTR 35.0%
AAAGTTTGGGTATTTACCAG+GGG + chr6_1:81699514-81699533 None:intergenic 35.0%
GAAAGTTTGGGTATTTACCA+GGG + chr6_1:81699515-81699534 None:intergenic 35.0%
AGAAAGTTTGGGTATTTACC+AGG + chr6_1:81699516-81699535 None:intergenic 35.0%
! GATTTTGTCTGATTTCATGG+GGG - chr6_1:81699889-81699908 Msa0895010:intron 35.0%
ACAAAACACTGACACATTCA+CGG + chr6_1:81700045-81700064 None:intergenic 35.0%
TGACATTCCTTTATCTATGG+TGG - chr6_1:81700086-81700105 Msa0895010:CDS 35.0%
AGACTCACTATATCCAACAA+AGG + chr6_1:81700115-81700134 None:intergenic 35.0%
TTGAAGAAAGAAGCAGAAGA+AGG - chr6_1:81700152-81700171 Msa0895010:intron 35.0%
TAAAGAGAGCAAAGATGTTG+TGG - chr6_1:81700175-81700194 Msa0895010:intron 35.0%
AAAGAGAGCAAAGATGTTGT+GGG - chr6_1:81700176-81700195 Msa0895010:intron 35.0%
AGGCAAGAAAACACTAATCA+TGG - chr6_1:81700434-81700453 Msa0895010:intron 35.0%
! TTTGTTGATGTTTCAGGTGA+AGG - chr6_1:81700760-81700779 Msa0895010:intron 35.0%
AGACATTGCTCACTAACTAA+GGG + chr6_1:81700920-81700939 None:intergenic 35.0%
!! GTGGTAAGTTGATATCGATA+AGG + chr6_1:81701021-81701040 None:intergenic 35.0%
GGAAAAAGGCAAGTCATAAT+TGG - chr6_1:81701210-81701229 Msa0895010:intron 35.0%
GTTGTCTAGAAGTTATTGAG+TGG - chr6_1:81701232-81701251 Msa0895010:intron 35.0%
AGAAGTTATTGAGTGGTTGT+TGG - chr6_1:81701239-81701258 Msa0895010:intron 35.0%
GAAGTTATTGAGTGGTTGTT+GGG - chr6_1:81701240-81701259 Msa0895010:intron 35.0%
AAGATGTAGAACAAAGACAC+AGG + chr6_1:81701307-81701326 None:intergenic 35.0%
TTTGCAACTGTTCTGACTAT+AGG - chr6_1:81701455-81701474 Msa0895010:intron 35.0%
!!! AGTTGAAGGCATTCATTTTG+AGG + chr6_1:81701486-81701505 None:intergenic 35.0%
CACTGATATTGGAATTTCCA+AGG + chr6_1:81701565-81701584 None:intergenic 35.0%
GTGTATAATGATGTTTGGTC+TGG - chr6_1:81701997-81702016 Msa0895010:intron 35.0%
TGTATTTCTCCATTGTTCTG+CGG + chr6_1:81702260-81702279 None:intergenic 35.0%
AATTCGCACATTAAGACAAC+GGG + chr6_1:81702346-81702365 None:intergenic 35.0%
CTATTTACCTGTTCTTCACT+TGG + chr6_1:81702375-81702394 None:intergenic 35.0%
TGTAGTGTCCAAGGAAATAA+TGG - chr6_1:81702408-81702427 Msa0895010:intron 35.0%
! GGAATCTGTTTCCTATGTTT+TGG - chr6_1:81702429-81702448 Msa0895010:intron 35.0%
CCTCAATGCTAAAAAACAAG+GGG + chr6_1:81702465-81702484 None:intergenic 35.0%
CCCTCAATGCTAAAAAACAA+GGG + chr6_1:81702466-81702485 None:intergenic 35.0%
!!! CCCTTGTTTTTTAGCATTGA+GGG - chr6_1:81702463-81702482 Msa0895010:intron 35.0%
TCCCTCAATGCTAAAAAACA+AGG + chr6_1:81702467-81702486 None:intergenic 35.0%
! ATTGAGGGAATTGTTTTCTC+TGG - chr6_1:81702478-81702497 Msa0895010:intron 35.0%
ATAGAGCAACATTCATCTAC+TGG + chr6_1:81702575-81702594 None:intergenic 35.0%
TAGATGAATGTTGCTCTATG+AGG - chr6_1:81702576-81702595 Msa0895010:intron 35.0%
GTATAAGTCCATGCTTCATA+AGG - chr6_1:81702631-81702650 Msa0895010:intron 35.0%
AATAGCTACTACTAACCGTA+TGG + chr6_1:81702694-81702713 None:intergenic 35.0%
AGGAATCTTACATAGGATTG+GGG + chr6_1:81702946-81702965 None:intergenic 35.0%
GCACATAAGGAATCTTACAT+AGG + chr6_1:81702953-81702972 None:intergenic 35.0%
ATTCTTAGGAGAAATGGTCT+TGG + chr6_1:81703003-81703022 None:intergenic 35.0%
CAAACAATAATGCCCAACAT+TGG + chr6_1:81703165-81703184 None:intergenic 35.0%
!!! CTGCATTTTTTAGTATGTCC+TGG + chr6_1:81703188-81703207 None:intergenic 35.0%
GCAGATTAAGAAACTTGGAA+AGG - chr6_1:81703204-81703223 Msa0895010:intron 35.0%
TTTGGTCAAGTTCTCTTCTA+AGG - chr6_1:81703296-81703315 Msa0895010:intron 35.0%
AGCATTTCCACTCTATAAGT+TGG - chr6_1:81703367-81703386 Msa0895010:intron 35.0%
CAGTTCATTGGTAAGAAAGA+AGG - chr6_1:81703503-81703522 Msa0895010:intron 35.0%
GCATAGCAGAGAAATCAAAT+CGG - chr6_1:81703555-81703574 Msa0895010:intron 35.0%
GCAAGTCTCAAATGACAATA+TGG + chr6_1:81703594-81703613 None:intergenic 35.0%
! CAGATTAAATTGGAAGCATG+TGG + chr6_1:81703635-81703654 None:intergenic 35.0%
CACATGCTTCCAATTTAATC+TGG - chr6_1:81703633-81703652 Msa0895010:intron 35.0%
TGACAAAACAATCAAGTAGG+CGG + chr6_1:81703919-81703938 None:intergenic 35.0%
!! TTTAGGTTGTTTCAAGTTCG+AGG - chr6_1:81704003-81704022 Msa0895010:intron 35.0%
GACTTCTTTATGAGCTATTG+AGG - chr6_1:81704170-81704189 Msa0895010:CDS 35.0%
TTATGAGCTATTGAGGAAAC+TGG - chr6_1:81704177-81704196 Msa0895010:CDS 35.0%
TTACATAATATGCTGCCCAA+TGG + chr6_1:81704228-81704247 None:intergenic 35.0%
! TTACCCAATTTGATAGCTCA+CGG - chr6_1:81704337-81704356 Msa0895010:CDS 35.0%
GAAAAATTGCTTTCTGTCCA+AGG + chr6_1:81704503-81704522 None:intergenic 35.0%
AGGAGAGAATGTGCAAATTA+AGG + chr6_1:81704637-81704656 None:intergenic 35.0%
TAAACATGTTAGGGACTAAC+TGG - chr6_1:81704769-81704788 Msa0895010:intron 35.0%
TGCAAATTCAGGGACAAAAA+TGG - chr6_1:81704855-81704874 Msa0895010:intron 35.0%
AAATTCAGGGACAAAAATGG+TGG - chr6_1:81704858-81704877 Msa0895010:intron 35.0%
TCTCTCATCTTCTCAACTTA+AGG - chr6_1:81705175-81705194 Msa0895010:five_prime_UTR 35.0%
ATTTCATGGGGGATAAGGAA+TGG - chr6_1:81699900-81699919 Msa0895010:intron 40.0%
!! TTCGGTGCTATATTAGGCTT+AGG + chr6_1:81699940-81699959 None:intergenic 40.0%
! CCTAATATAGCACCGAAACA+CGG - chr6_1:81699943-81699962 Msa0895010:intron 40.0%
TAACAAGATTCGCCGTGTTT+CGG + chr6_1:81699958-81699977 None:intergenic 40.0%
CATTCCTTTATCTATGGTGG+TGG - chr6_1:81700089-81700108 Msa0895010:CDS 40.0%
! ATAACACTGTCGAGGGTTTT+GGG + chr6_1:81700216-81700235 None:intergenic 40.0%
GACCATAGAACAGCAAATGA+GGG + chr6_1:81700404-81700423 None:intergenic 40.0%
! AAAAAAGACCTTTTCGGCAC+CGG + chr6_1:81700484-81700503 None:intergenic 40.0%
!!! TTACTTTTGGTGCTCACACA+AGG + chr6_1:81700590-81700609 None:intergenic 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG - chr6_1:81700771-81700790 Msa0895010:CDS 40.0%
TCAGGTGAAGGTGGAAAATA+GGG - chr6_1:81700772-81700791 Msa0895010:CDS 40.0%
CAGACATTGCTCACTAACTA+AGG + chr6_1:81700921-81700940 None:intergenic 40.0%
CGGAACTGTTTGACAATAAG+TGG + chr6_1:81700962-81700981 None:intergenic 40.0%
AAACATTGCTGTAGGATGAG+AGG - chr6_1:81701081-81701100 Msa0895010:CDS 40.0%
!! AAACTGACTCTGGTCAGTTT+TGG + chr6_1:81701120-81701139 None:intergenic 40.0%
AGAACCAAGCTCTCAAATCT+TGG - chr6_1:81701269-81701288 Msa0895010:intron 40.0%
! GAGCTATTTCCAGAACTGTT+TGG - chr6_1:81701388-81701407 Msa0895010:intron 40.0%
AAACAGGTACCAAACAGTTC+TGG + chr6_1:81701400-81701419 None:intergenic 40.0%
!! AGTACTTGAGCACTGTTTTC+AGG - chr6_1:81701653-81701672 Msa0895010:intron 40.0%
TCTTCATGGTCAACAAACAG+TGG - chr6_1:81701908-81701927 Msa0895010:intron 40.0%
! AGAGCCTTAAAGCATTACAC+AGG + chr6_1:81702037-81702056 None:intergenic 40.0%
AATAAGAAACCTCTCCACCT+TGG - chr6_1:81702077-81702096 Msa0895010:intron 40.0%
TAATGCACCAAGTGAAGAAC+AGG - chr6_1:81702365-81702384 Msa0895010:CDS 40.0%
! GAAGTTTTCTGTAGTGTCCA+AGG - chr6_1:81702399-81702418 Msa0895010:intron 40.0%
!!! CCCCTTGTTTTTTAGCATTG+AGG - chr6_1:81702462-81702481 Msa0895010:intron 40.0%
! AGGGAATTGTTTTCTCTGGT+AGG - chr6_1:81702482-81702501 Msa0895010:intron 40.0%
! GGGAATTGTTTTCTCTGGTA+GGG - chr6_1:81702483-81702502 Msa0895010:intron 40.0%
ATGAATGTTGCTCTATGAGG+TGG - chr6_1:81702579-81702598 Msa0895010:intron 40.0%
GAATGATCATAGACTACCAG+AGG - chr6_1:81702841-81702860 Msa0895010:CDS 40.0%
GGAATCTTACATAGGATTGG+GGG + chr6_1:81702945-81702964 None:intergenic 40.0%
!! ATGGTCTTGGAAGTGCTAAA+AGG + chr6_1:81702990-81703009 None:intergenic 40.0%
CGGAATTATTTCAGCCTATG+AGG + chr6_1:81703119-81703138 None:intergenic 40.0%
! AATAATGCCCAACATTGGCT+TGG + chr6_1:81703160-81703179 None:intergenic 40.0%
AGAAACTTGGAAAGGAAGGT+TGG - chr6_1:81703212-81703231 Msa0895010:intron 40.0%
GAAACTTGGAAAGGAAGGTT+GGG - chr6_1:81703213-81703232 Msa0895010:intron 40.0%
AACTTCAACAATCTGCCACA+TGG + chr6_1:81703480-81703499 None:intergenic 40.0%
!! ACAGCTCATGTGTTACTTGT+AGG - chr6_1:81703714-81703733 Msa0895010:intron 40.0%
ATTGTTTGCTTGTCGGTGAA+AGG + chr6_1:81703743-81703762 None:intergenic 40.0%
GGCGGTTATAAAAACTGACA+AGG + chr6_1:81703901-81703920 None:intergenic 40.0%
TGAAGCATGAAATCTGCCAT+TGG - chr6_1:81704209-81704228 Msa0895010:intron 40.0%
GAAGCATGAAATCTGCCATT+GGG - chr6_1:81704210-81704229 Msa0895010:intron 40.0%
AGTATCTTCTGCATGAACTC+AGG - chr6_1:81704299-81704318 Msa0895010:intron 40.0%
GTTCCGTGAGCTATCAAATT+GGG + chr6_1:81704343-81704362 None:intergenic 40.0%
TGTTCCGTGAGCTATCAAAT+TGG + chr6_1:81704344-81704363 None:intergenic 40.0%
TTCTTTCCCCTCATTTAACC+AGG - chr6_1:81704464-81704483 Msa0895010:intron 40.0%
TATGCTCCTGGTTAAATGAG+GGG + chr6_1:81704473-81704492 None:intergenic 40.0%
CTATGCTCCTGGTTAAATGA+GGG + chr6_1:81704474-81704493 None:intergenic 40.0%
CTATACATTGGCAGCATTTG+TGG - chr6_1:81705025-81705044 Msa0895010:intron 40.0%
ACATTCGGCTGAAGAAACAA+TGG - chr6_1:81705086-81705105 Msa0895010:intron 40.0%
ATATGTGGGAATGAGAAGGT+GGG + chr6_1:81705320-81705339 None:intergenic 40.0%
AACCATATGTGGGAATGAGA+AGG + chr6_1:81705324-81705343 None:intergenic 40.0%
GTCTGATTTCATGGGGGATA+AGG - chr6_1:81699895-81699914 Msa0895010:intron 45.0%
!! CCGTGTTTCGGTGCTATATT+AGG + chr6_1:81699946-81699965 None:intergenic 45.0%
AAGGCCACCACCATAGATAA+AGG + chr6_1:81700096-81700115 None:intergenic 45.0%
! CATAACACTGTCGAGGGTTT+TGG + chr6_1:81700217-81700236 None:intergenic 45.0%
CAAAACCCTCGACAGTGTTA+TGG - chr6_1:81700215-81700234 Msa0895010:intron 45.0%
GTGAACCATAACACTGTCGA+GGG + chr6_1:81700223-81700242 None:intergenic 45.0%
TGTGAACCATAACACTGTCG+AGG + chr6_1:81700224-81700243 None:intergenic 45.0%
!! TGCCCTCATTTGCTGTTCTA+TGG - chr6_1:81700399-81700418 Msa0895010:CDS 45.0%
GGACCATAGAACAGCAAATG+AGG + chr6_1:81700405-81700424 None:intergenic 45.0%
! TTGCTGTTCTATGGTCCATC+AGG - chr6_1:81700408-81700427 Msa0895010:CDS 45.0%
! AAAAAGACCTTTTCGGCACC+GGG + chr6_1:81700483-81700502 None:intergenic 45.0%
! GTTGATGTTTCAGGTGAAGG+TGG - chr6_1:81700763-81700782 Msa0895010:intron 45.0%
TGAAGGTGGAAAATAGGGCT+TGG - chr6_1:81700777-81700796 Msa0895010:CDS 45.0%
GGAAAATAGGGCTTGGAAAG+TGG - chr6_1:81700784-81700803 Msa0895010:CDS 45.0%
CGATAAGGTTGCTCATTCTC+TGG + chr6_1:81701006-81701025 None:intergenic 45.0%
! CTGACCAGAGTCAGTTTTTG+TGG - chr6_1:81701123-81701142 Msa0895010:intron 45.0%
! ACTGCCACAAAAACTGACTC+TGG + chr6_1:81701130-81701149 None:intergenic 45.0%
CCTACCAAGATTTGAGAGCT+TGG + chr6_1:81701276-81701295 None:intergenic 45.0%
CCAAGCTCTCAAATCTTGGT+AGG - chr6_1:81701273-81701292 Msa0895010:intron 45.0%
TGCAGGAACACACAATACGA+TGG + chr6_1:81701355-81701374 None:intergenic 45.0%
TGTGTGTTCCTGCACTATTC+TGG - chr6_1:81701361-81701380 Msa0895010:intron 45.0%
AGTAATACTGCAAGCCAAGG+TGG + chr6_1:81702094-81702113 None:intergenic 45.0%
TGCAGTAATACTGCAAGCCA+AGG + chr6_1:81702097-81702116 None:intergenic 45.0%
TGTTCTGCGGAGAGAATGTT+GGG + chr6_1:81702247-81702266 None:intergenic 45.0%
TTGTTCTGCGGAGAGAATGT+TGG + chr6_1:81702248-81702267 None:intergenic 45.0%
ACATTCTCTCCGCAGAACAA+TGG - chr6_1:81702248-81702267 Msa0895010:CDS 45.0%
AAGTCCATGCTTCATAAGGG+AGG - chr6_1:81702635-81702654 Msa0895010:intron 45.0%
AGTCCATGCTTCATAAGGGA+GGG - chr6_1:81702636-81702655 Msa0895010:intron 45.0%
AGCGAAACAAACTACTCCTC+TGG + chr6_1:81702860-81702879 None:intergenic 45.0%
!! TTGGAAGTGCTAAAAGGTGC+CGG + chr6_1:81702984-81703003 None:intergenic 45.0%
!! AGCCTATGAGGCTGATTTGT+GGG + chr6_1:81703107-81703126 None:intergenic 45.0%
! GGTGGATTCTCCATGCATTT+CGG + chr6_1:81703139-81703158 None:intergenic 45.0%
AGAATCCACCAAGCCAATGT+TGG - chr6_1:81703149-81703168 Msa0895010:intron 45.0%
GAATCCACCAAGCCAATGTT+GGG - chr6_1:81703150-81703169 Msa0895010:intron 45.0%
GTTGGGCATTATTGTTTGCC+AGG - chr6_1:81703167-81703186 Msa0895010:intron 45.0%
! GCTGCAACTTCCTTCTAGTT+TGG - chr6_1:81703526-81703545 Msa0895010:intron 45.0%
AAGCATGTGGAGCTTACTGT+TGG + chr6_1:81703622-81703641 None:intergenic 45.0%
TGGGGGAATTGTTTGCTTGT+CGG + chr6_1:81703750-81703769 None:intergenic 45.0%
CAAGCAAACAATTCCCCCAA+TGG - chr6_1:81703751-81703770 Msa0895010:intron 45.0%
AAACAATTCCCCCAATGGAC+TGG - chr6_1:81703756-81703775 Msa0895010:intron 45.0%
! AACAATTCCCCCAATGGACT+GGG - chr6_1:81703757-81703776 Msa0895010:intron 45.0%
TATACTCCTCCCAGTCCATT+GGG + chr6_1:81703769-81703788 None:intergenic 45.0%
ATATACTCCTCCCAGTCCAT+TGG + chr6_1:81703770-81703789 None:intergenic 45.0%
TGAAGGAACAGAGCCCAAAA+AGG - chr6_1:81703813-81703832 Msa0895010:intron 45.0%
! TCCTCCGGAGATCATTTTGA+AGG - chr6_1:81704056-81704075 Msa0895010:intron 45.0%
ACCTTCAAAATGATCTCCGG+AGG + chr6_1:81704060-81704079 None:intergenic 45.0%
CCTATGCTCCTGGTTAAATG+AGG + chr6_1:81704475-81704494 None:intergenic 45.0%
! CCTCATTTAACCAGGAGCAT+AGG - chr6_1:81704472-81704491 Msa0895010:intron 45.0%
TCCTTCCTCATCGCAACATT+CGG - chr6_1:81705071-81705090 Msa0895010:intron 45.0%
CATATGTGGGAATGAGAAGG+TGG + chr6_1:81705321-81705340 None:intergenic 45.0%
CACCTTCTCATTCCCACATA+TGG - chr6_1:81705319-81705338 Msa0895010:five_prime_UTR 45.0%
GTTTGGGTATTTACCAGGGG+CGG + chr6_1:81699511-81699530 None:intergenic 50.0%
!! TCTATGGTGGTGGCCTTTGT+TGG - chr6_1:81700099-81700118 Msa0895010:CDS 50.0%
! TGGATCGGATGTGTTGTTGC+AGG - chr6_1:81700362-81700381 Msa0895010:CDS 50.0%
GCTCTTCTCCGCCAAATGTT+TGG - chr6_1:81700456-81700475 Msa0895010:intron 50.0%
ATTGCTGTAGGATGAGAGGC+AGG - chr6_1:81701085-81701104 Msa0895010:CDS 50.0%
!! CTGGTCAGTTTTGGCCTTCT+AGG + chr6_1:81701111-81701130 None:intergenic 50.0%
GTGTTCCTGCACTATTCTGG+TGG - chr6_1:81701364-81701383 Msa0895010:intron 50.0%
!! CTTGAGCACTGTTTTCAGGC+TGG - chr6_1:81701657-81701676 Msa0895010:intron 50.0%
CGCTTGGAGTCATTTCGATG+TGG + chr6_1:81701728-81701747 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG - chr6_1:81701732-81701751 Msa0895010:intron 50.0%
GCACATTAAGACAACGGGAG+CGG + chr6_1:81702341-81702360 None:intergenic 50.0%
GGCAATAGCTACTACCCGTA+TGG + chr6_1:81702782-81702801 None:intergenic 50.0%
TCCTTATGTGCTTCACCGAC+CGG - chr6_1:81702962-81702981 Msa0895010:intron 50.0%
!! AAGTGCTAAAAGGTGCCGGT+CGG + chr6_1:81702980-81702999 None:intergenic 50.0%
ATATCCTCTCTCCCTGACCA+AGG - chr6_1:81703064-81703083 Msa0895010:intron 50.0%
TATCCTCTCTCCCTGACCAA+GGG - chr6_1:81703065-81703084 Msa0895010:intron 50.0%
AGAAGGTCTACCCTTGGTCA+GGG + chr6_1:81703078-81703097 None:intergenic 50.0%
TAGAAGGTCTACCCTTGGTC+AGG + chr6_1:81703079-81703098 None:intergenic 50.0%
!! TGATTTGTGGGGGCACTAGA+AGG + chr6_1:81703095-81703114 None:intergenic 50.0%
!! CCTATGAGGCTGATTTGTGG+GGG + chr6_1:81703105-81703124 None:intergenic 50.0%
!! GCCTATGAGGCTGATTTGTG+GGG + chr6_1:81703106-81703125 None:intergenic 50.0%
!! CAGCCTATGAGGCTGATTTG+TGG + chr6_1:81703108-81703127 None:intergenic 50.0%
!! AATGCCCAACATTGGCTTGG+TGG + chr6_1:81703157-81703176 None:intergenic 50.0%
ATGCGAGCAGCCAAACTAGA+AGG + chr6_1:81703539-81703558 None:intergenic 50.0%
GTGGAGCTTACTGTTGGACA+CGG + chr6_1:81703616-81703635 None:intergenic 50.0%
ATACTCCTCCCAGTCCATTG+GGG + chr6_1:81703768-81703787 None:intergenic 50.0%
GCTGACCAATTGCATTCCTC+CGG - chr6_1:81704041-81704060 Msa0895010:intron 50.0%
GATCTCCGGAGGAATGCAAT+TGG + chr6_1:81704049-81704068 None:intergenic 50.0%
TTCAGCCGAATGTTGCGATG+AGG + chr6_1:81705079-81705098 None:intergenic 50.0%
CAATGGTGCTTTGCTTTCCC+AGG - chr6_1:81705103-81705122 Msa0895010:five_prime_UTR 50.0%
TGCGATTCTGCGACGGTCTA+GGG + chr6_1:81699407-81699426 None:intergenic 55.0%
CTGTGACTGCGATTCTGCGA+CGG + chr6_1:81699414-81699433 None:intergenic 55.0%
GAGAGTGAGCAGTCGAGCTT+CGG + chr6_1:81699465-81699484 None:intergenic 55.0%
TTCTATGGTCCATCAGGCGC+AGG - chr6_1:81700414-81700433 Msa0895010:CDS 55.0%
! GTTTTCTTGCCTGCGCCTGA+TGG + chr6_1:81700426-81700445 None:intergenic 55.0%
CTCCGCCAAATGTTTGGACC+CGG - chr6_1:81700462-81700481 Msa0895010:intron 55.0%
CACCGGGTCCAAACATTTGG+CGG + chr6_1:81700467-81700486 None:intergenic 55.0%
GCTCACCACCAGAATAGTGC+AGG + chr6_1:81701372-81701391 None:intergenic 55.0%
TCCAAGCGATGCAGGCTTTC+AGG - chr6_1:81701740-81701759 Msa0895010:intron 55.0%
TCCTGAAAGCCTGCATCGCT+TGG + chr6_1:81701744-81701763 None:intergenic 55.0%
TACTGCAAGCCAAGGTGGAG+AGG + chr6_1:81702089-81702108 None:intergenic 55.0%
AGGCCCTCCCTTATGAAGCA+TGG + chr6_1:81702642-81702661 None:intergenic 55.0%
GGTCAGGGAGAGAGGATATC+AGG + chr6_1:81703063-81703082 None:intergenic 55.0%
GGCACTAGAAGGTCTACCCT+TGG + chr6_1:81703084-81703103 None:intergenic 55.0%
CCCCCACAAATCAGCCTCAT+AGG - chr6_1:81703102-81703121 Msa0895010:intron 55.0%
!! AATTCCCCCAATGGACTGGG+AGG - chr6_1:81703760-81703779 Msa0895010:intron 55.0%
TACTCCTCCCAGTCCATTGG+GGG + chr6_1:81703767-81703786 None:intergenic 55.0%
GCCGAATGTTGCGATGAGGA+AGG + chr6_1:81705075-81705094 None:intergenic 55.0%
CTGCGATTCTGCGACGGTCT+AGG + chr6_1:81699408-81699427 None:intergenic 60.0%
GCAGTCACAGCCATCCACCT+CGG - chr6_1:81699424-81699443 Msa0895010:three_prime_UTR 60.0%
GCAGTCGAGCTTCGGTGGAA+CGG + chr6_1:81699457-81699476 None:intergenic 60.0%
AGTGAGCAGTCGAGCTTCGG+TGG + chr6_1:81699462-81699481 None:intergenic 60.0%
CGGATGGAGTGGAGCAGAGA+TGG + chr6_1:81699491-81699510 None:intergenic 60.0%
TTTACCAGGGGCGGATGGAG+TGG + chr6_1:81699502-81699521 None:intergenic 60.0%
GGGTATTTACCAGGGGCGGA+TGG + chr6_1:81699507-81699526 None:intergenic 60.0%
! CGGCACCGGGTCCAAACATT+TGG + chr6_1:81700470-81700489 None:intergenic 60.0%
! GTTTGGACCCGGTGCCGAAA+AGG - chr6_1:81700473-81700492 Msa0895010:intron 60.0%
GGATGAGAGGCAGGCCTAGA+AGG - chr6_1:81701094-81701113 Msa0895010:CDS 60.0%
GCCGGTCGGTGAAGCACATA+AGG + chr6_1:81702966-81702985 None:intergenic 60.0%
CTACCCTTGGTCAGGGAGAG+AGG + chr6_1:81703071-81703090 None:intergenic 60.0%
CAAGGCGCATCCTATGCTCC+TGG + chr6_1:81704485-81704504 None:intergenic 60.0%
! CAGGAGCATAGGATGCGCCT+TGG - chr6_1:81704483-81704502 Msa0895010:intron 60.0%
GTCGAGCTTCGGTGGAACGG+AGG + chr6_1:81699454-81699473 None:intergenic 65.0%
CGGAGGAGCTCCGAGGTGGA+TGG + chr6_1:81699437-81699456 None:intergenic 70.0%
GGAACGGAGGAGCTCCGAGG+TGG + chr6_1:81699441-81699460 None:intergenic 70.0%
GGTGGAACGGAGGAGCTCCG+AGG + chr6_1:81699444-81699463 None:intergenic 70.0%
TGCTCCACTCCATCCGCCCC+TGG - chr6_1:81699495-81699514 Msa0895010:exon 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 81699260 81705345 81699260 ID=Msa0895010;Name=Msa0895010
chr6_1 mRNA 81699260 81705345 81699260 ID=Msa0895010-mRNA-1;Parent=Msa0895010;Name=Msa0895010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=318|1|1|1|0.90|0.83|12|248|354
chr6_1 exon 81699260 81699566 81699260 ID=Msa0895010-mRNA-1:exon:13865;Parent=Msa0895010-mRNA-1
chr6_1 exon 81700074 81700119 81700074 ID=Msa0895010-mRNA-1:exon:13864;Parent=Msa0895010-mRNA-1
chr6_1 exon 81700362 81700436 81700362 ID=Msa0895010-mRNA-1:exon:13863;Parent=Msa0895010-mRNA-1
chr6_1 exon 81700528 81700597 81700528 ID=Msa0895010-mRNA-1:exon:13862;Parent=Msa0895010-mRNA-1
chr6_1 exon 81700771 81700869 81700771 ID=Msa0895010-mRNA-1:exon:13861;Parent=Msa0895010-mRNA-1
chr6_1 exon 81700981 81701117 81700981 ID=Msa0895010-mRNA-1:exon:13860;Parent=Msa0895010-mRNA-1
chr6_1 exon 81702219 81702400 81702219 ID=Msa0895010-mRNA-1:exon:13859;Parent=Msa0895010-mRNA-1
chr6_1 exon 81702762 81702930 81702762 ID=Msa0895010-mRNA-1:exon:13858;Parent=Msa0895010-mRNA-1
chr6_1 exon 81703797 81703829 81703797 ID=Msa0895010-mRNA-1:exon:13857;Parent=Msa0895010-mRNA-1
chr6_1 exon 81704111 81704221 81704111 ID=Msa0895010-mRNA-1:exon:13856;Parent=Msa0895010-mRNA-1
chr6_1 exon 81704333 81704477 81704333 ID=Msa0895010-mRNA-1:exon:13855;Parent=Msa0895010-mRNA-1
chr6_1 exon 81705089 81705345 81705089 ID=Msa0895010-mRNA-1:exon:13854;Parent=Msa0895010-mRNA-1
chr6_1 five_prime_UTR 81705089 81705345 81705089 ID=Msa0895010-mRNA-1:five_prime_utr;Parent=Msa0895010-mRNA-1
chr6_1 five_prime_UTR 81704417 81704477 81704417 ID=Msa0895010-mRNA-1:five_prime_utr;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81704333 81704416 81704333 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81704111 81704221 81704111 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81703797 81703829 81703797 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81702762 81702930 81702762 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81702219 81702400 81702219 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81700981 81701117 81700981 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81700771 81700869 81700771 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81700528 81700597 81700528 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81700362 81700436 81700362 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81700074 81700119 81700074 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 CDS 81699508 81699566 81699508 ID=Msa0895010-mRNA-1:cds;Parent=Msa0895010-mRNA-1
chr6_1 three_prime_UTR 81699260 81699507 81699260 ID=Msa0895010-mRNA-1:three_prime_utr;Parent=Msa0895010-mRNA-1
Gene Sequence

>Msa0895010

ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTCGACAGTGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTCACTGAACATGATTGCCCTCATTTGCTGTTCTATGGTCCATCAGGCGCAGGCAAGAAAACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGGCTTGGAAAGTGGATGCTGGAAGTAGATCTATAGACTTAGAGCTGACTACATTATCAAGTGCGAACCACATCGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTTCTTAATGATGTTGACAAACTCTCAAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGCGCTTATTGCAGATTAGTTCTATGTTGCAATAGCTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTTAATGTGCGAATTAATGCACCAAGTGAAGAACAGATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTGGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACCGACAAGCAAACAATTCCCCCAATGGACTGGGAGGAGTATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTGTATGAGCTGCTGACCAATTGCATTCCTCCGGAGATCATTTTGAAGAGACTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTGAAGCATGAAATCTGCCATTGGGCAGCATATTATGAGCATAGGATGCGCCTTGGACAGAAAGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTTATGAGCGTCTACAAGTCCTTCCTCATCGCAACATTCGGCTGA

Protein sequence

>Msa0895010

MLWVDKYRPKTLDSVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG*