Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0271510 | Msa0927580 | 0.801576 | 8.434902e-49 | -8.615850e-47 |
| Msa0927580 | Msa1440370 | 0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0927580 | Msa1440810 | 0.801583 | 8.409861e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACATACATGTTAATTT+TGG | 0.134258 | 6_2:+72016204 | Msa0927580:CDS |
| GGAAACATACATGTTAATTT+TGG | 0.134258 | 6_2:+72016282 | Msa0927580:CDS |
| ATGGAAGAATCTTACTAAAA+TGG | 0.155410 | 6_2:+72012379 | Msa0927580:CDS |
| CATACAAAAGAAAGCTTTAA+AGG | 0.184730 | 6_2:+72016155 | Msa0927580:CDS |
| GGCCGATTTCGGGGTGGTTC+AGG | 0.189083 | 6_2:-72012164 | None:intergenic |
| ACTTGCTGGGGAAGAAATTT+TGG | 0.215332 | 6_2:-72016551 | None:intergenic |
| TGGCAAAACAAGGCCGATTT+CGG | 0.257088 | 6_2:-72012175 | None:intergenic |
| GGCAAAACAAGGCCGATTTC+GGG | 0.275766 | 6_2:-72012174 | None:intergenic |
| ACATTTCTGTTATTACTTGC+TGG | 0.312374 | 6_2:-72016565 | None:intergenic |
| GCCGATTTCGGGGTGGTTCA+GGG | 0.356653 | 6_2:-72012163 | None:intergenic |
| CATTTCTGTTATTACTTGCT+GGG | 0.378864 | 6_2:-72016564 | None:intergenic |
| AGGCGGCGGCTACGGCGGTA+AGG | 0.398978 | 6_2:-72012134 | None:intergenic |
| GGGAGAAAAGGCGGCGGCTA+CGG | 0.400330 | 6_2:-72012142 | None:intergenic |
| TGGAAGAATCTTACTAAAAT+GGG | 0.406090 | 6_2:+72012380 | Msa0927580:CDS |
| GCTCAGAAAACTCCTTCAAA+AGG | 0.426724 | 6_2:-72012288 | None:intergenic |
| CCCCTGAACCACCCCGAAAT+CGG | 0.428544 | 6_2:+72012162 | Msa0927580:five_prime_UTR |
| ATACAAAAGAAAGCTTTAAA+GGG | 0.432886 | 6_2:+72016156 | Msa0927580:CDS |
| TAACAGAAATGTTGATCTAC+AGG | 0.441093 | 6_2:+72016576 | Msa0927580:CDS |
| GAAAGCTTTAAAGGGAGAAA+AGG | 0.447001 | 6_2:+72016164 | Msa0927580:CDS |
| GGCGGCGGCTACGGCGGTAA+GGG | 0.454302 | 6_2:-72012133 | None:intergenic |
| GGGGTGGTTCAGGGGAGAAA+AGG | 0.465108 | 6_2:-72012154 | None:intergenic |
| GTGGTTCAGGGGAGAAAAGG+CGG | 0.478485 | 6_2:-72012151 | None:intergenic |
| AGAAGCTTTGTCCCAGGCAT+TGG | 0.479951 | 6_2:-72016349 | None:intergenic |
| TGCAGCTGAACACCAATGCC+TGG | 0.481854 | 6_2:+72016337 | Msa0927580:CDS |
| GAGATGAAGAAAACATGGTT+TGG | 0.485287 | 6_2:-72012199 | None:intergenic |
| TGAAGAAAACATGGTTTGGT+TGG | 0.497014 | 6_2:-72012195 | None:intergenic |
| AAAGGACAACTCTGACAGTA+AGG | 0.503151 | 6_2:-72016520 | None:intergenic |
| CAGTAAGGACACTTTACAGC+TGG | 0.527688 | 6_2:-72016505 | None:intergenic |
| CTCAGAAAACTCCTTCAAAA+GGG | 0.531449 | 6_2:-72012287 | None:intergenic |
| AAGGATCAAGTAGAGATGAA+AGG | 0.537740 | 6_2:+72016183 | Msa0927580:CDS |
| TAAGGGTTTAATGAGGAAGA+TGG | 0.538177 | 6_2:-72012116 | None:intergenic |
| CTCATCACAATGCAGAGTGC+AGG | 0.539371 | 6_2:+72016242 | Msa0927580:CDS |
| ATGGTTTGGTTGGCAAAACA+AGG | 0.543578 | 6_2:-72012185 | None:intergenic |
| TTGAGGAGATGAAGAAAACA+TGG | 0.551186 | 6_2:-72012204 | None:intergenic |
| TAAAATGATAGAGAAGGTTG+AGG | 0.552852 | 6_2:-72012221 | None:intergenic |
| AGAAAAGGCGGCGGCTACGG+CGG | 0.556376 | 6_2:-72012139 | None:intergenic |
| CCGATTTCGGGGTGGTTCAG+GGG | 0.557249 | 6_2:-72012162 | None:intergenic |
| CAGGATCAAGTAGAGATGAA+AGG | 0.574262 | 6_2:+72016261 | Msa0927580:CDS |
| TCTCCTTAACAAAATCTCGA+TGG | 0.587328 | 6_2:+72012360 | Msa0927580:CDS |
| TCGATTGATGAAACGACCTC+AGG | 0.589044 | 6_2:-72012313 | None:intergenic |
| GCAGCTGAACACCAATGCCT+GGG | 0.607153 | 6_2:+72016338 | Msa0927580:CDS |
| ATTTCTGTTATTACTTGCTG+GGG | 0.607361 | 6_2:-72016563 | None:intergenic |
| TGAGGAAGATGGAGAAAACG+TGG | 0.608892 | 6_2:-72012105 | None:intergenic |
| TCCCGATAAAATGATAGAGA+AGG | 0.613391 | 6_2:-72012227 | None:intergenic |
| ACTAGGAGAAGCTTTGTCCC+AGG | 0.614696 | 6_2:-72016355 | None:intergenic |
| GCAAAACAAGGCCGATTTCG+GGG | 0.641518 | 6_2:-72012173 | None:intergenic |
| ACGGCGGTAAGGGTTTAATG+AGG | 0.670465 | 6_2:-72012123 | None:intergenic |
| GTTCAGGGGAGAAAAGGCGG+CGG | 0.678204 | 6_2:-72012148 | None:intergenic |
| AAACAAGGCCGATTTCGGGG+TGG | 0.679206 | 6_2:-72012170 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTATTTTTAGAAAAA+AGG | - | chr6_2:72013694-72013713 | None:intergenic | 10.0% |
| !!! | ATTTATAGATTTTTTTTTAG+AGG | + | chr6_2:72016384-72016403 | Msa0927580:intron | 10.0% |
| !! | AAAAGAGAATATCTAAAAAA+TGG | + | chr6_2:72012260-72012279 | Msa0927580:five_prime_UTR | 15.0% |
| !! | AAAGAGAATATCTAAAAAAT+GGG | + | chr6_2:72012261-72012280 | Msa0927580:five_prime_UTR | 15.0% |
| !! | AAATTAAATACTTTACCTTT+CGG | + | chr6_2:72012514-72012533 | Msa0927580:intron | 15.0% |
| !! | AAATCAAAATTGAATCAATT+AGG | + | chr6_2:72013152-72013171 | Msa0927580:intron | 15.0% |
| !! | TTAAGTCATAATATATATGA+AGG | + | chr6_2:72015011-72015030 | Msa0927580:intron | 15.0% |
| !!! | TGAAAGTTTACTTTTTAAAA+TGG | + | chr6_2:72015314-72015333 | Msa0927580:intron | 15.0% |
| !!! | GAAAGTTTACTTTTTAAAAT+GGG | + | chr6_2:72015315-72015334 | Msa0927580:intron | 15.0% |
| !! | GATAATATAACATGATATAA+TGG | + | chr6_2:72015493-72015512 | Msa0927580:intron | 15.0% |
| !! | AATCTATAAATACTAATACT+AGG | - | chr6_2:72016375-72016394 | None:intergenic | 15.0% |
| !! | AAATAAAGCAAAAATAAGAC+AGG | - | chr6_2:72012443-72012462 | None:intergenic | 20.0% |
| !!! | TGTTAAGTTTCTATTCTTTT+TGG | + | chr6_2:72012540-72012559 | Msa0927580:intron | 20.0% |
| !! | ATGTGTCTGTTAAATTAATA+TGG | + | chr6_2:72012598-72012617 | Msa0927580:intron | 20.0% |
| !! | TTTCAAGATACAAATACAAA+TGG | + | chr6_2:72012940-72012959 | Msa0927580:intron | 20.0% |
| !!! | TGTAAGGTATATTTCTTTTT+GGG | - | chr6_2:72013722-72013741 | None:intergenic | 20.0% |
| !!! | ATGTAAGGTATATTTCTTTT+TGG | - | chr6_2:72013723-72013742 | None:intergenic | 20.0% |
| !! | TTATGAGAAAATTACATGTA+AGG | - | chr6_2:72013738-72013757 | None:intergenic | 20.0% |
| !!! | TATGAATGAAAATGCTTTTA+TGG | - | chr6_2:72013813-72013832 | None:intergenic | 20.0% |
| !! | ATTTAACCAAAGTTATTACA+AGG | - | chr6_2:72013867-72013886 | None:intergenic | 20.0% |
| !!! | CTTAATTATTTTATTTGTGC+AGG | + | chr6_2:72014220-72014239 | Msa0927580:intron | 20.0% |
| !! | AAATAGTTTAGCATTAATGT+TGG | - | chr6_2:72014433-72014452 | None:intergenic | 20.0% |
| !!! | ATTAATGCTAAACTATTTTC+AGG | + | chr6_2:72014435-72014454 | Msa0927580:intron | 20.0% |
| !!! | ATGTTAATGAATCTCTTTTT+TGG | + | chr6_2:72014724-72014743 | Msa0927580:intron | 20.0% |
| !! | AACTTACTTGTACATATATT+TGG | + | chr6_2:72015196-72015215 | Msa0927580:intron | 20.0% |
| !! | TGTATTATGACTTAAAATTC+TGG | + | chr6_2:72015252-72015271 | Msa0927580:intron | 20.0% |
| !! | GTATTATGACTTAAAATTCT+GGG | + | chr6_2:72015253-72015272 | Msa0927580:intron | 20.0% |
| !! | TCTCTTTATATATGTTTAGA+TGG | + | chr6_2:72015639-72015658 | Msa0927580:intron | 20.0% |
| !! | CAAAGATAACAAAAATTACT+CGG | - | chr6_2:72016019-72016038 | None:intergenic | 20.0% |
| !!! | TGTTCTTCTTTTCTTTTTTT+TGG | + | chr6_2:72016125-72016144 | Msa0927580:intron | 20.0% |
| !!! | ATACAAAAGAAAGCTTTAAA+GGG | + | chr6_2:72016156-72016175 | Msa0927580:CDS | 20.0% |
| !! | AACCTTCTCTATCATTTTAT+CGG | + | chr6_2:72012225-72012244 | Msa0927580:five_prime_UTR | 25.0% |
| ! | ATGGAAGAATCTTACTAAAA+TGG | + | chr6_2:72012379-72012398 | Msa0927580:CDS | 25.0% |
| ! | TGGAAGAATCTTACTAAAAT+GGG | + | chr6_2:72012380-72012399 | Msa0927580:CDS | 25.0% |
| ! | TTCACAAAAGACAATTAAGA+TGG | - | chr6_2:72012907-72012926 | None:intergenic | 25.0% |
| !!! | CATCTTGATAACTACTTTTT+TGG | - | chr6_2:72013031-72013050 | None:intergenic | 25.0% |
| ! | TACATAAAAGACAAGGAAAA+AGG | - | chr6_2:72013121-72013140 | None:intergenic | 25.0% |
| ! | AAGCAATCTCATATAATAGA+AGG | - | chr6_2:72013244-72013263 | None:intergenic | 25.0% |
| !! | AATTGAGGAAAATCAGTTTT+TGG | - | chr6_2:72013286-72013305 | None:intergenic | 25.0% |
| ! | ATGATCATTAAAGTGAATTG+AGG | - | chr6_2:72013301-72013320 | None:intergenic | 25.0% |
| ! | TTGATCAATGCTATTGTTAA+TGG | + | chr6_2:72013379-72013398 | Msa0927580:intron | 25.0% |
| ! | TATGATTATCATGTATTTGC+AGG | + | chr6_2:72013529-72013548 | Msa0927580:intron | 25.0% |
| ! | ACTTCTACCTATTTAACATT+TGG | + | chr6_2:72014072-72014091 | Msa0927580:intron | 25.0% |
| ! | AACTTAGCCAAATGTTAAAT+AGG | - | chr6_2:72014082-72014101 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGCAGGTAATT+TGG | + | chr6_2:72014228-72014247 | Msa0927580:intron | 25.0% |
| ! | CCTTCAATAAAAATGCATAT+GGG | + | chr6_2:72014251-72014270 | Msa0927580:intron | 25.0% |
| !! | TAATTTACTGAGACATTTTG+TGG | + | chr6_2:72014491-72014510 | Msa0927580:intron | 25.0% |
| !! | TTTTGTAATCTACACAAAGT+TGG | + | chr6_2:72014524-72014543 | Msa0927580:intron | 25.0% |
| ! | TATATATGAAGGAAACTCAA+AGG | + | chr6_2:72015022-72015041 | Msa0927580:intron | 25.0% |
| ! | ATATATGAAGGAAACTCAAA+GGG | + | chr6_2:72015023-72015042 | Msa0927580:intron | 25.0% |
| ! | GTACAAGTAAGTTAAAACAA+TGG | - | chr6_2:72015189-72015208 | None:intergenic | 25.0% |
| ! | TGGAATCAATAGTTATAACA+TGG | + | chr6_2:72015216-72015235 | Msa0927580:intron | 25.0% |
| ! | GGAATCAATAGTTATAACAT+GGG | + | chr6_2:72015217-72015236 | Msa0927580:intron | 25.0% |
| ! | GAACCATCTAAAAATTTCAA+AGG | - | chr6_2:72015381-72015400 | None:intergenic | 25.0% |
| ! | TATAGTAACAACAAGATCAA+TGG | - | chr6_2:72015451-72015470 | None:intergenic | 25.0% |
| ! | CATTCAAGAATTTCATGAAT+TGG | + | chr6_2:72015807-72015826 | Msa0927580:intron | 25.0% |
| ! | TTGCATGTTGAATATACAAA+TGG | + | chr6_2:72015871-72015890 | Msa0927580:intron | 25.0% |
| ! | ACAAGATATCTACAAATTCA+AGG | - | chr6_2:72015912-72015931 | None:intergenic | 25.0% |
| ! | AACTATTAACTGAAGTTCAT+TGG | - | chr6_2:72015950-72015969 | None:intergenic | 25.0% |
| !! | CATACAAAAGAAAGCTTTAA+AGG | + | chr6_2:72016155-72016174 | Msa0927580:CDS | 25.0% |
| !! | GGAAACATACATGTTAATTT+TGG | + | chr6_2:72016204-72016223 | Msa0927580:CDS | 25.0% |
| !!! | CATACATGTTAATTTTGGAA+TGG | + | chr6_2:72016209-72016228 | Msa0927580:CDS | 25.0% |
| !!! | ATGTTAATTTTGGAATGGAA+TGG | + | chr6_2:72016214-72016233 | Msa0927580:CDS | 25.0% |
| !! | GGAAACATACATGTTAATTT+TGG | + | chr6_2:72016204-72016223 | Msa0927580:CDS | 25.0% |
| !!! | CATACATGTTAATTTTGGAA+TGG | + | chr6_2:72016209-72016228 | Msa0927580:CDS | 25.0% |
| !!! | ATGTTAATTTTGGAATGGAA+TGG | + | chr6_2:72016214-72016233 | Msa0927580:CDS | 25.0% |
| !! | AGGCTATATAAATTTTTGCA+GGG | + | chr6_2:72016404-72016423 | Msa0927580:intron | 25.0% |
| !!! | AACGTGGTTTGTTTGTTTTA+GGG | - | chr6_2:72012092-72012111 | None:intergenic | 30.0% |
| !!! | AAACGTGGTTTGTTTGTTTT+AGG | - | chr6_2:72012093-72012112 | None:intergenic | 30.0% |
| TAAAATGATAGAGAAGGTTG+AGG | - | chr6_2:72012224-72012243 | None:intergenic | 30.0% | |
| ! | ACCTTCTCTATCATTTTATC+GGG | + | chr6_2:72012226-72012245 | Msa0927580:five_prime_UTR | 30.0% |
| ! | GAAACACAAGATTTTGCAAA+AGG | - | chr6_2:72012473-72012492 | None:intergenic | 30.0% |
| TTCTAGACACCAAATATTTC+TGG | - | chr6_2:72012750-72012769 | None:intergenic | 30.0% | |
| !! | ATATTTGGTGTCTAGAAACA+TGG | + | chr6_2:72012753-72012772 | Msa0927580:intron | 30.0% |
| CATCAATTCTCTGAATTTAC+AGG | - | chr6_2:72012832-72012851 | None:intergenic | 30.0% | |
| CTGTAAATTCAGAGAATTGA+TGG | + | chr6_2:72012830-72012849 | Msa0927580:intron | 30.0% | |
| ! | TCTTTTGTGAAACTTTTAGC+AGG | + | chr6_2:72012916-72012935 | Msa0927580:intron | 30.0% |
| TAAGCTTATCAAAGTTCAAG+AGG | + | chr6_2:72012978-72012997 | Msa0927580:intron | 30.0% | |
| AAGCTTATCAAAGTTCAAGA+GGG | + | chr6_2:72012979-72012998 | Msa0927580:intron | 30.0% | |
| !!! | TTGATAACTACTTTTTTGGC+CGG | - | chr6_2:72013027-72013046 | None:intergenic | 30.0% |
| AGAACAGTACATAAAAGACA+AGG | - | chr6_2:72013128-72013147 | None:intergenic | 30.0% | |
| TTGGATTCTATAACTCAGAT+GGG | - | chr6_2:72013267-72013286 | None:intergenic | 30.0% | |
| TTTGGATTCTATAACTCAGA+TGG | - | chr6_2:72013268-72013287 | None:intergenic | 30.0% | |
| TGTGCAAATTAACTCTTAAC+AGG | - | chr6_2:72013501-72013520 | None:intergenic | 30.0% | |
| CATACATGATCAAAAGTAGT+AGG | - | chr6_2:72013626-72013645 | None:intergenic | 30.0% | |
| ATGACACCTTGTAATAACTT+TGG | + | chr6_2:72013858-72013877 | Msa0927580:intron | 30.0% | |
| ! | ATTTTTGCAGGAAAAATTGG+TGG | - | chr6_2:72013979-72013998 | None:intergenic | 30.0% |
| ! | CTGATTTTTGCAGGAAAAAT+TGG | - | chr6_2:72013982-72014001 | None:intergenic | 30.0% |
| !! | AAATCACAACTGATTTTTGC+AGG | - | chr6_2:72013991-72014010 | None:intergenic | 30.0% |
| ! | AAATCAGTTGTGATTTGTGA+TGG | + | chr6_2:72013995-72014014 | Msa0927580:intron | 30.0% |
| GCCTTCAATAAAAATGCATA+TGG | + | chr6_2:72014250-72014269 | Msa0927580:intron | 30.0% | |
| ! | CCCATATGCATTTTTATTGA+AGG | - | chr6_2:72014254-72014273 | None:intergenic | 30.0% |
| ATCAGACTATCAAAGATTCT+TGG | - | chr6_2:72014340-72014359 | None:intergenic | 30.0% | |
| ! | TTGATAGTCTGATATTCAAC+TGG | + | chr6_2:72014347-72014366 | Msa0927580:intron | 30.0% |
| !!! | GAAAGTTTGTCTTGTTTTGT+TGG | + | chr6_2:72014394-72014413 | Msa0927580:intron | 30.0% |
| ! | TTCAGGTTTACAAAGATAGT+TGG | + | chr6_2:72014452-72014471 | Msa0927580:intron | 30.0% |
| TCAGGTTTACAAAGATAGTT+GGG | + | chr6_2:72014453-72014472 | Msa0927580:intron | 30.0% | |
| ! | TTTTTCTCCTTTCAGTTATG+TGG | - | chr6_2:72014639-72014658 | None:intergenic | 30.0% |
| TAGTAATTATTCGTTCCTTG+TGG | + | chr6_2:72014891-72014910 | Msa0927580:intron | 30.0% | |
| TATATGAAGGAAACTCAAAG+GGG | + | chr6_2:72015024-72015043 | Msa0927580:intron | 30.0% | |
| !!! | ATTGCTTTTTCTGCATCTTT+TGG | - | chr6_2:72015095-72015114 | None:intergenic | 30.0% |
| !!! | GGCTTTTGATTTACTATTTC+AGG | + | chr6_2:72015336-72015355 | Msa0927580:intron | 30.0% |
| !!! | CTGCCTTTGAAATTTTTAGA+TGG | + | chr6_2:72015375-72015394 | Msa0927580:intron | 30.0% |
| ! | AATTATGGTGGTGATAAAAC+TGG | - | chr6_2:72015412-72015431 | None:intergenic | 30.0% |
| TCTGAGCTTACAATCAATTA+TGG | - | chr6_2:72015427-72015446 | None:intergenic | 30.0% | |
| ! | GAGGCTATATAAATTTTTGC+AGG | + | chr6_2:72016403-72016422 | Msa0927580:intron | 30.0% |
| ! | TAAATTTTTGCAGGGCTAAA+AGG | + | chr6_2:72016412-72016431 | Msa0927580:intron | 30.0% |
| GGCTAAAAGGTTGAAAAAAT+GGG | + | chr6_2:72016425-72016444 | Msa0927580:intron | 30.0% | |
| ! | AAACACTTTCCAGATTTTGT+GGG | - | chr6_2:72016458-72016477 | None:intergenic | 30.0% |
| ! | AAAACACTTTCCAGATTTTG+TGG | - | chr6_2:72016459-72016478 | None:intergenic | 30.0% |
| !! | GAAATTTTGGCAGACATAAA+AGG | - | chr6_2:72016541-72016560 | None:intergenic | 30.0% |
| ! | ATTTCTGTTATTACTTGCTG+GGG | - | chr6_2:72016566-72016585 | None:intergenic | 30.0% |
| CATTTCTGTTATTACTTGCT+GGG | - | chr6_2:72016567-72016586 | None:intergenic | 30.0% | |
| ACATTTCTGTTATTACTTGC+TGG | - | chr6_2:72016568-72016587 | None:intergenic | 30.0% | |
| TAACAGAAATGTTGATCTAC+AGG | + | chr6_2:72016576-72016595 | Msa0927580:CDS | 30.0% | |
| GTTGATCTACAGGAAAAATT+AGG | + | chr6_2:72016586-72016605 | Msa0927580:CDS | 30.0% | |
| CAGGAAAAATTAGGCAAAAT+TGG | + | chr6_2:72016595-72016614 | Msa0927580:CDS | 30.0% | |
| TAAGGGTTTAATGAGGAAGA+TGG | - | chr6_2:72012119-72012138 | None:intergenic | 35.0% | |
| !! | TGAAGAAAACATGGTTTGGT+TGG | - | chr6_2:72012198-72012217 | None:intergenic | 35.0% |
| GAGATGAAGAAAACATGGTT+TGG | - | chr6_2:72012202-72012221 | None:intergenic | 35.0% | |
| TTGAGGAGATGAAGAAAACA+TGG | - | chr6_2:72012207-72012226 | None:intergenic | 35.0% | |
| TCCCGATAAAATGATAGAGA+AGG | - | chr6_2:72012230-72012249 | None:intergenic | 35.0% | |
| ! | AAAATGGGTATCCCTTTTGA+AGG | + | chr6_2:72012276-72012295 | Msa0927580:five_prime_UTR | 35.0% |
| CTCAGAAAACTCCTTCAAAA+GGG | - | chr6_2:72012290-72012309 | None:intergenic | 35.0% | |
| TCTCCTTAACAAAATCTCGA+TGG | + | chr6_2:72012360-72012379 | Msa0927580:CDS | 35.0% | |
| ! | CTTCCATCGAGATTTTGTTA+AGG | - | chr6_2:72012366-72012385 | None:intergenic | 35.0% |
| AGAAACTTAACATAGCCGAA+AGG | - | chr6_2:72012532-72012551 | None:intergenic | 35.0% | |
| ACACATCAAAGAACATCAGT+TGG | - | chr6_2:72012584-72012603 | None:intergenic | 35.0% | |
| !!! | TTTTTTCCACCACCTAAAGT+CGG | - | chr6_2:72012633-72012652 | None:intergenic | 35.0% |
| ! | ACATTAGTTTCCACAAGTGA+GGG | - | chr6_2:72012667-72012686 | None:intergenic | 35.0% |
| ! | TACATTAGTTTCCACAAGTG+AGG | - | chr6_2:72012668-72012687 | None:intergenic | 35.0% |
| TGTCATATGATCGATAATGC+TGG | + | chr6_2:72012714-72012733 | Msa0927580:intron | 35.0% | |
| !! | TAGACACCAAATATTTCTGG+AGG | - | chr6_2:72012747-72012766 | None:intergenic | 35.0% |
| GTCTAGAAACATGGTATTCA+TGG | + | chr6_2:72012762-72012781 | Msa0927580:intron | 35.0% | |
| !!! | TGATAACTACTTTTTTGGCC+GGG | - | chr6_2:72013026-72013045 | None:intergenic | 35.0% |
| AAGTAGTTATCAAGATGCTG+CGG | + | chr6_2:72013034-72013053 | Msa0927580:intron | 35.0% | |
| GGTTGAACTTGGAAATGAAT+TGG | + | chr6_2:72013055-72013074 | Msa0927580:intron | 35.0% | |
| GGAAACATGTCATAGAGTAA+GGG | - | chr6_2:72013100-72013119 | None:intergenic | 35.0% | |
| AGGAAACATGTCATAGAGTA+AGG | - | chr6_2:72013101-72013120 | None:intergenic | 35.0% | |
| ACATAACCAACTGAACTAAG+GGG | - | chr6_2:72013178-72013197 | None:intergenic | 35.0% | |
| GACATAACCAACTGAACTAA+GGG | - | chr6_2:72013179-72013198 | None:intergenic | 35.0% | |
| TGACATAACCAACTGAACTA+AGG | - | chr6_2:72013180-72013199 | None:intergenic | 35.0% | |
| TTAGTTCAGTTGGTTATGTC+AGG | + | chr6_2:72013179-72013198 | Msa0927580:intron | 35.0% | |
| AAAGCTGCTATATCATGTCT+TGG | + | chr6_2:72013892-72013911 | Msa0927580:intron | 35.0% | |
| AAGCTGCTATATCATGTCTT+GGG | + | chr6_2:72013893-72013912 | Msa0927580:intron | 35.0% | |
| AGATTAGAATGCTGCATTGA+AGG | + | chr6_2:72014274-72014293 | Msa0927580:intron | 35.0% | |
| TAGGGTGTGTATTATCTCAT+TGG | - | chr6_2:72014316-72014335 | None:intergenic | 35.0% | |
| CTATCAAAGATTCTTGGCTA+GGG | - | chr6_2:72014334-72014353 | None:intergenic | 35.0% | |
| ACTATCAAAGATTCTTGGCT+AGG | - | chr6_2:72014335-72014354 | None:intergenic | 35.0% | |
| CAGGTTTACAAAGATAGTTG+GGG | + | chr6_2:72014454-72014473 | Msa0927580:intron | 35.0% | |
| ! | TTCTTGTTTACATGCTTGCT+GGG | + | chr6_2:72014558-72014577 | Msa0927580:intron | 35.0% |
| ! | ACACAGTTTCTCAAAGTGTT+TGG | - | chr6_2:72014591-72014610 | None:intergenic | 35.0% |
| TTTGAGAAACTGTGTGATGA+AGG | + | chr6_2:72014596-72014615 | Msa0927580:intron | 35.0% | |
| CAGTTATGTGGAAGCAAATT+TGG | - | chr6_2:72014627-72014646 | None:intergenic | 35.0% | |
| TTTGCTTCCACATAACTGAA+AGG | + | chr6_2:72014629-72014648 | Msa0927580:intron | 35.0% | |
| !!! | TCTTTTTTGGACAAACATGC+TGG | + | chr6_2:72014737-72014756 | Msa0927580:intron | 35.0% |
| CTTTCTATTCAAATGCCACA+AGG | - | chr6_2:72014909-72014928 | None:intergenic | 35.0% | |
| GAAAAACCTCATGTGAATCT+AGG | + | chr6_2:72014975-72014994 | Msa0927580:intron | 35.0% | |
| TGTATTCCTAGATTCACATG+AGG | - | chr6_2:72014984-72015003 | None:intergenic | 35.0% | |
| !! | CTGCATCTTTTGGTTGTATT+TGG | - | chr6_2:72015085-72015104 | None:intergenic | 35.0% |
| GAGCTTACAATCAATTATGG+TGG | - | chr6_2:72015424-72015443 | None:intergenic | 35.0% | |
| ! | TCTTTTATGCAATCTGTCCA+AGG | - | chr6_2:72015680-72015699 | None:intergenic | 35.0% |
| TGAAAGTAAACATCAGTCTG+AGG | - | chr6_2:72015712-72015731 | None:intergenic | 35.0% | |
| ! | TTCCAATTACTGTGCTCTTT+TGG | + | chr6_2:72015758-72015777 | Msa0927580:intron | 35.0% |
| AGAATTTCATGAATTGGCTG+TGG | + | chr6_2:72015813-72015832 | Msa0927580:intron | 35.0% | |
| !! | GAAAGCTTTAAAGGGAGAAA+AGG | + | chr6_2:72016164-72016183 | Msa0927580:CDS | 35.0% |
| AAGGATCAAGTAGAGATGAA+AGG | + | chr6_2:72016183-72016202 | Msa0927580:CDS | 35.0% | |
| GGGCTAAAAGGTTGAAAAAA+TGG | + | chr6_2:72016424-72016443 | Msa0927580:intron | 35.0% | |
| GGATAAAATCCCACAAAATC+TGG | + | chr6_2:72016446-72016465 | Msa0927580:intron | 35.0% | |
| !! | ATGGTTTGGTTGGCAAAACA+AGG | - | chr6_2:72012188-72012207 | None:intergenic | 40.0% |
| GCTCAGAAAACTCCTTCAAA+AGG | - | chr6_2:72012291-72012310 | None:intergenic | 40.0% | |
| ! | CATTAGTTTCCACAAGTGAG+GGG | - | chr6_2:72012666-72012685 | None:intergenic | 40.0% |
| CATATGATCGATAATGCTGG+TGG | + | chr6_2:72012717-72012736 | Msa0927580:intron | 40.0% | |
| !!! | TCAAGAGGGTGTTTTTTGTG+TGG | + | chr6_2:72012993-72013012 | Msa0927580:intron | 40.0% |
| ! | TTTTTGTGTGGAAGTAGTCC+CGG | + | chr6_2:72013005-72013024 | Msa0927580:intron | 40.0% |
| ! | TTTGAAGTCAACCTGCAGTT+TGG | + | chr6_2:72013600-72013619 | Msa0927580:intron | 40.0% |
| GTCATCGTTCATGATGCATT+TGG | - | chr6_2:72013843-72013862 | None:intergenic | 40.0% | |
| GCAAGCATGTAAACAAGAAC+AGG | - | chr6_2:72014557-72014576 | None:intergenic | 40.0% | |
| ! | GTTCTTGTTTACATGCTTGC+TGG | + | chr6_2:72014557-72014576 | Msa0927580:intron | 40.0% |
| GAAACTCAAAGGGGTGAAAT+TGG | + | chr6_2:72015033-72015052 | Msa0927580:intron | 40.0% | |
| ! | GGTTGTATTTGGAATCTGAG+AGG | - | chr6_2:72015074-72015093 | None:intergenic | 40.0% |
| CGCATCAAGAGTCGATAAAA+GGG | - | chr6_2:72015556-72015575 | None:intergenic | 40.0% | |
| ACGCATCAAGAGTCGATAAA+AGG | - | chr6_2:72015557-72015576 | None:intergenic | 40.0% | |
| ATCTGTCCAAGGTATGGATA+TGG | - | chr6_2:72015669-72015688 | None:intergenic | 40.0% | |
| TATGCAATCTGTCCAAGGTA+TGG | - | chr6_2:72015675-72015694 | None:intergenic | 40.0% | |
| ! | CACCAAAAGAGCACAGTAAT+TGG | - | chr6_2:72015763-72015782 | None:intergenic | 40.0% |
| GGCTGTGGAAACTTATGTAT+TGG | + | chr6_2:72015828-72015847 | Msa0927580:intron | 40.0% | |
| CAGGATCAAGTAGAGATGAA+AGG | + | chr6_2:72016261-72016280 | Msa0927580:CDS | 40.0% | |
| AAAGGACAACTCTGACAGTA+AGG | - | chr6_2:72016523-72016542 | None:intergenic | 40.0% | |
| !! | ACTTGCTGGGGAAGAAATTT+TGG | - | chr6_2:72016554-72016573 | None:intergenic | 40.0% |
| TGAGGAAGATGGAGAAAACG+TGG | - | chr6_2:72012108-72012127 | None:intergenic | 45.0% | |
| ! | TGGCAAAACAAGGCCGATTT+CGG | - | chr6_2:72012178-72012197 | None:intergenic | 45.0% |
| TCGATTGATGAAACGACCTC+AGG | - | chr6_2:72012316-72012335 | None:intergenic | 45.0% | |
| GGCATGCCTCCAGAAATATT+TGG | + | chr6_2:72012738-72012757 | Msa0927580:intron | 45.0% | |
| ATTAGGCCCCTTAGTTCAGT+TGG | + | chr6_2:72013169-72013188 | Msa0927580:intron | 45.0% | |
| AAAGTAGTAGGCCAAACTGC+AGG | - | chr6_2:72013614-72013633 | None:intergenic | 45.0% | |
| GATATTCAACTGGAGCACAC+AGG | + | chr6_2:72014357-72014376 | Msa0927580:intron | 45.0% | |
| CAAAGATAGTTGGGGTCTGA+AGG | + | chr6_2:72014462-72014481 | Msa0927580:intron | 45.0% | |
| CAACATGTGTTCAGCACACA+AGG | - | chr6_2:72014956-72014975 | None:intergenic | 45.0% | |
| ! | TGGTGGTGATAAAACTGGCT+GGG | - | chr6_2:72015407-72015426 | None:intergenic | 45.0% |
| ! | ATGGTGGTGATAAAACTGGC+TGG | - | chr6_2:72015408-72015427 | None:intergenic | 45.0% |
| CAGTAAGGACACTTTACAGC+TGG | - | chr6_2:72016508-72016527 | None:intergenic | 45.0% | |
| ACGGCGGTAAGGGTTTAATG+AGG | - | chr6_2:72012126-72012145 | None:intergenic | 50.0% | |
| ! | GCAAAACAAGGCCGATTTCG+GGG | - | chr6_2:72012176-72012195 | None:intergenic | 50.0% |
| ! | GGCAAAACAAGGCCGATTTC+GGG | - | chr6_2:72012177-72012196 | None:intergenic | 50.0% |
| ! | GGAGTTTTCTGAGCAACCTG+AGG | + | chr6_2:72012297-72012316 | Msa0927580:five_prime_UTR | 50.0% |
| !! | TGGTACCCAGTACCGACTTT+AGG | + | chr6_2:72012618-72012637 | Msa0927580:intron | 50.0% |
| !! | TACCCAGTACCGACTTTAGG+TGG | + | chr6_2:72012621-72012640 | Msa0927580:intron | 50.0% |
| CACCACCTAAAGTCGGTACT+GGG | - | chr6_2:72012626-72012645 | None:intergenic | 50.0% | |
| ! | TGTTTTGCTCCCCTCACTTG+TGG | + | chr6_2:72012654-72012673 | Msa0927580:intron | 50.0% |
| CAAGATGCTGCGGTTGAACT+TGG | + | chr6_2:72013044-72013063 | Msa0927580:intron | 50.0% | |
| ! | ATCTCATTGGCTAGCGTCAC+TGG | - | chr6_2:72014303-72014322 | None:intergenic | 50.0% |
| GGACTGCCATATCCATACCT+TGG | + | chr6_2:72015660-72015679 | Msa0927580:intron | 50.0% | |
| GAAGCACACAAGCAGCATGA+AGG | - | chr6_2:72015788-72015807 | None:intergenic | 50.0% | |
| CTCATCACAATGCAGAGTGC+AGG | + | chr6_2:72016242-72016261 | Msa0927580:CDS | 50.0% | |
| ! | AGAAGCTTTGTCCCAGGCAT+TGG | - | chr6_2:72016352-72016371 | None:intergenic | 50.0% |
| ! | ACTAGGAGAAGCTTTGTCCC+AGG | - | chr6_2:72016358-72016377 | None:intergenic | 50.0% |
| GTGGTTCAGGGGAGAAAAGG+CGG | - | chr6_2:72012154-72012173 | None:intergenic | 55.0% | |
| ! | AAACAAGGCCGATTTCGGGG+TGG | - | chr6_2:72012173-72012192 | None:intergenic | 55.0% |
| CCACCACCTAAAGTCGGTAC+TGG | - | chr6_2:72012627-72012646 | None:intergenic | 55.0% | |
| !! | CCAGTACCGACTTTAGGTGG+TGG | + | chr6_2:72012624-72012643 | Msa0927580:intron | 55.0% |
| ! | TTACATGCTTGCTGGGCTGC+TGG | + | chr6_2:72014565-72014584 | Msa0927580:intron | 55.0% |
| TGCAGCTGAACACCAATGCC+TGG | + | chr6_2:72016337-72016356 | Msa0927580:CDS | 55.0% | |
| GCAGCTGAACACCAATGCCT+GGG | + | chr6_2:72016338-72016357 | Msa0927580:CDS | 55.0% | |
| GTTCAGGGGAGAAAAGGCGG+CGG | - | chr6_2:72012151-72012170 | None:intergenic | 60.0% | |
| GGGGTGGTTCAGGGGAGAAA+AGG | - | chr6_2:72012157-72012176 | None:intergenic | 60.0% | |
| CCGATTTCGGGGTGGTTCAG+GGG | - | chr6_2:72012165-72012184 | None:intergenic | 60.0% | |
| CCCCTGAACCACCCCGAAAT+CGG | + | chr6_2:72012162-72012181 | Msa0927580:five_prime_UTR | 60.0% | |
| ! | GCCGATTTCGGGGTGGTTCA+GGG | - | chr6_2:72012166-72012185 | None:intergenic | 60.0% |
| AGAAAAGGCGGCGGCTACGG+CGG | - | chr6_2:72012142-72012161 | None:intergenic | 65.0% | |
| GGGAGAAAAGGCGGCGGCTA+CGG | - | chr6_2:72012145-72012164 | None:intergenic | 65.0% | |
| ! | GGCCGATTTCGGGGTGGTTC+AGG | - | chr6_2:72012167-72012186 | None:intergenic | 65.0% |
| GGCGGCGGCTACGGCGGTAA+GGG | - | chr6_2:72012136-72012155 | None:intergenic | 75.0% | |
| AGGCGGCGGCTACGGCGGTA+AGG | - | chr6_2:72012137-72012156 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 72012065 | 72016621 | 72012065 | ID=Msa0927580;Name=Msa0927580 |
| chr6_2 | mRNA | 72012065 | 72016621 | 72012065 | ID=Msa0927580-mRNA-1;Parent=Msa0927580;Name=Msa0927580-mRNA-1;_AED=0.42;_eAED=0.65;_QI=276|0|0.25|1|0|0|4|0|139 |
| chr6_2 | exon | 72012065 | 72012401 | 72012065 | ID=Msa0927580-mRNA-1:exon:12153;Parent=Msa0927580-mRNA-1 |
| chr6_2 | exon | 72016151 | 72016375 | 72016151 | ID=Msa0927580-mRNA-1:exon:12154;Parent=Msa0927580-mRNA-1 |
| chr6_2 | exon | 72016425 | 72016433 | 72016425 | ID=Msa0927580-mRNA-1:exon:12155;Parent=Msa0927580-mRNA-1 |
| chr6_2 | exon | 72016497 | 72016621 | 72016497 | ID=Msa0927580-mRNA-1:exon:12156;Parent=Msa0927580-mRNA-1 |
| chr6_2 | five_prime_UTR | 72012065 | 72012340 | 72012065 | ID=Msa0927580-mRNA-1:five_prime_utr;Parent=Msa0927580-mRNA-1 |
| chr6_2 | CDS | 72012341 | 72012401 | 72012341 | ID=Msa0927580-mRNA-1:cds;Parent=Msa0927580-mRNA-1 |
| chr6_2 | CDS | 72016151 | 72016375 | 72016151 | ID=Msa0927580-mRNA-1:cds;Parent=Msa0927580-mRNA-1 |
| chr6_2 | CDS | 72016425 | 72016433 | 72016425 | ID=Msa0927580-mRNA-1:cds;Parent=Msa0927580-mRNA-1 |
| chr6_2 | CDS | 72016497 | 72016621 | 72016497 | ID=Msa0927580-mRNA-1:cds;Parent=Msa0927580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
