Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271510 | XP_003593098.1 | 97.176 | 425 | 11 | 1 | 1 | 425 | 1 | 424 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271510 | A2Q483 | 97.176 | 425 | 11 | 1 | 1 | 425 | 1 | 424 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009430 | Msa0271510 | 0.806974 | 6.339388e-50 | -8.615850e-47 |
| Msa0020930 | Msa0271510 | 0.820345 | 7.205225e-53 | -8.615850e-47 |
| Msa0032090 | Msa0271510 | 0.807771 | 4.295770e-50 | -8.615850e-47 |
| Msa0033110 | Msa0271510 | 0.807710 | 4.425572e-50 | -8.615850e-47 |
| Msa0033260 | Msa0271510 | 0.816765 | 4.670547e-52 | -8.615850e-47 |
| Msa0034410 | Msa0271510 | 0.823521 | 1.324478e-53 | -8.615850e-47 |
| Msa0037570 | Msa0271510 | -0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0044260 | Msa0271510 | 0.823962 | 1.044222e-53 | -8.615850e-47 |
| Msa0044330 | Msa0271510 | 0.818942 | 1.506474e-52 | -8.615850e-47 |
| Msa0072420 | Msa0271510 | 0.839824 | 1.257877e-57 | -8.615850e-47 |
| Msa0075360 | Msa0271510 | 0.812230 | 4.706692e-51 | -8.615850e-47 |
| Msa0076320 | Msa0271510 | 0.810949 | 8.938597e-51 | -8.615850e-47 |
| Msa0079380 | Msa0271510 | 0.806174 | 9.351215e-50 | -8.615850e-47 |
| Msa0083280 | Msa0271510 | 0.828122 | 1.071472e-54 | -8.615850e-47 |
| Msa0091410 | Msa0271510 | 0.816346 | 5.798485e-52 | -8.615850e-47 |
| Msa0104240 | Msa0271510 | 0.800298 | 1.538813e-48 | -8.615850e-47 |
| Msa0114060 | Msa0271510 | 0.849393 | 3.328585e-60 | -8.615850e-47 |
| Msa0118990 | Msa0271510 | 0.813204 | 2.881611e-51 | -8.615850e-47 |
| Msa0127650 | Msa0271510 | 0.827661 | 1.383100e-54 | -8.615850e-47 |
| Msa0137730 | Msa0271510 | 0.818871 | 1.563112e-52 | -8.615850e-47 |
| Msa0150300 | Msa0271510 | 0.841099 | 5.833458e-58 | -8.615850e-47 |
| Msa0159930 | Msa0271510 | 0.830078 | 3.595551e-55 | -8.615850e-47 |
| Msa0168580 | Msa0271510 | 0.806290 | 8.836371e-50 | -8.615850e-47 |
| Msa0175430 | Msa0271510 | 0.807783 | 4.270187e-50 | -8.615850e-47 |
| Msa0189320 | Msa0271510 | 0.946002 | 1.056444e-104 | -8.615850e-47 |
| Msa0194950 | Msa0271510 | -0.814763 | 1.305532e-51 | -8.615850e-47 |
| Msa0211150 | Msa0271510 | 0.823068 | 1.690103e-53 | -8.615850e-47 |
| Msa0219260 | Msa0271510 | 0.816219 | 6.191009e-52 | -8.615850e-47 |
| Msa0233630 | Msa0271510 | -0.813924 | 2.000657e-51 | -8.615850e-47 |
| Msa0236960 | Msa0271510 | -0.814933 | 1.197002e-51 | -8.615850e-47 |
| Msa0240920 | Msa0271510 | 0.889004 | 3.569609e-73 | -8.615850e-47 |
| Msa0241390 | Msa0271510 | 0.841135 | 5.708751e-58 | -8.615850e-47 |
| Msa0257520 | Msa0271510 | 0.816730 | 4.757473e-52 | -8.615850e-47 |
| Msa0258890 | Msa0271510 | 0.819886 | 9.175229e-53 | -8.615850e-47 |
| Msa0260680 | Msa0271510 | 0.803173 | 3.954847e-49 | -8.615850e-47 |
| Msa0261090 | Msa0271510 | 0.821509 | 3.888994e-53 | -8.615850e-47 |
| Msa0266350 | Msa0271510 | 0.801641 | 8.182906e-49 | -8.615850e-47 |
| Msa0271510 | Msa0272300 | 0.823108 | 1.654039e-53 | -8.615850e-47 |
| Msa0271510 | Msa0279240 | 0.800645 | 1.307640e-48 | -8.615850e-47 |
| Msa0271510 | Msa0280090 | 0.820847 | 5.525771e-53 | -8.615850e-47 |
| Msa0271510 | Msa0298320 | 0.820866 | 5.468836e-53 | -8.615850e-47 |
| Msa0271510 | Msa0305410 | 0.801612 | 8.295617e-49 | -8.615850e-47 |
| Msa0271510 | Msa0309770 | 0.857874 | 1.212181e-62 | -8.615850e-47 |
| Msa0271510 | Msa0315440 | -0.811667 | 6.242546e-51 | -8.615850e-47 |
| Msa0271510 | Msa0317940 | 0.806284 | 8.863408e-50 | -8.615850e-47 |
| Msa0271510 | Msa0318680 | 0.854065 | 1.576870e-61 | -8.615850e-47 |
| Msa0271510 | Msa0318980 | 0.815290 | 9.971400e-52 | -8.615850e-47 |
| Msa0271510 | Msa0334550 | 0.873270 | 1.675031e-67 | -8.615850e-47 |
| Msa0271510 | Msa0383800 | 0.816308 | 5.914197e-52 | -8.615850e-47 |
| Msa0271510 | Msa0398670 | 0.899362 | 2.136932e-77 | -8.615850e-47 |
| Msa0271510 | Msa0411160 | 0.813607 | 2.350031e-51 | -8.615850e-47 |
| Msa0271510 | Msa0411190 | 0.819283 | 1.259783e-52 | -8.615850e-47 |
| Msa0271510 | Msa0432080 | 0.803619 | 3.197117e-49 | -8.615850e-47 |
| Msa0271510 | Msa0440990 | 0.813252 | 2.811758e-51 | -8.615850e-47 |
| Msa0271510 | Msa0454360 | 0.818064 | 2.382127e-52 | -8.615850e-47 |
| Msa0271510 | Msa0463010 | 0.828954 | 6.743799e-55 | -8.615850e-47 |
| Msa0271510 | Msa0477080 | 0.813309 | 2.731590e-51 | -8.615850e-47 |
| Msa0271510 | Msa0484720 | 0.821338 | 4.256835e-53 | -8.615850e-47 |
| Msa0271510 | Msa0493630 | 0.801222 | 9.967157e-49 | -8.615850e-47 |
| Msa0271510 | Msa0548240 | 0.835200 | 1.927029e-56 | -8.615850e-47 |
| Msa0271510 | Msa0562030 | 0.814283 | 1.667079e-51 | -8.615850e-47 |
| Msa0271510 | Msa0567350 | 0.821660 | 3.588507e-53 | -8.615850e-47 |
| Msa0271510 | Msa0602390 | 0.804177 | 2.448072e-49 | -8.615850e-47 |
| Msa0271510 | Msa0606720 | 0.893759 | 4.661738e-75 | -8.615850e-47 |
| Msa0271510 | Msa0607050 | 0.820888 | 5.405178e-53 | -8.615850e-47 |
| Msa0271510 | Msa0620460 | 0.802486 | 5.484628e-49 | -8.615850e-47 |
| Msa0271510 | Msa0623790 | 0.819831 | 9.444068e-53 | -8.615850e-47 |
| Msa0271510 | Msa0643560 | 0.800684 | 1.284337e-48 | -8.615850e-47 |
| Msa0271510 | Msa0647500 | 0.822060 | 2.898208e-53 | -8.615850e-47 |
| Msa0271510 | Msa0649490 | 0.810547 | 1.091575e-50 | -8.615850e-47 |
| Msa0271510 | Msa0658890 | 0.805239 | 1.469510e-49 | -8.615850e-47 |
| Msa0271510 | Msa0663390 | 0.807940 | 3.953398e-50 | -8.615850e-47 |
| Msa0271510 | Msa0666270 | 0.805623 | 1.220792e-49 | -8.615850e-47 |
| Msa0271510 | Msa0673160 | 0.808716 | 2.701131e-50 | -8.615850e-47 |
| Msa0271510 | Msa0690150 | 0.800336 | 1.511611e-48 | -8.615850e-47 |
| Msa0271510 | Msa0693010 | -0.842211 | 2.969111e-58 | -8.615850e-47 |
| Msa0271510 | Msa0699280 | 0.803458 | 3.453333e-49 | -8.615850e-47 |
| Msa0271510 | Msa0707250 | 0.818194 | 2.226211e-52 | -8.615850e-47 |
| Msa0271510 | Msa0709400 | 0.883946 | 2.915989e-71 | -8.615850e-47 |
| Msa0271510 | Msa0711450 | 0.845087 | 5.054126e-59 | -8.615850e-47 |
| Msa0271510 | Msa0741440 | 0.831981 | 1.226463e-55 | -8.615850e-47 |
| Msa0271510 | Msa0788850 | 0.829872 | 4.036963e-55 | -8.615850e-47 |
| Msa0271510 | Msa0802010 | 0.830791 | 2.407213e-55 | -8.615850e-47 |
| Msa0271510 | Msa0827930 | 0.813584 | 2.377459e-51 | -8.615850e-47 |
| Msa0271510 | Msa0831110 | 0.809662 | 1.693717e-50 | -8.615850e-47 |
| Msa0271510 | Msa0832150 | 0.801262 | 9.782491e-49 | -8.615850e-47 |
| Msa0271510 | Msa0858390 | 0.800776 | 1.229527e-48 | -8.615850e-47 |
| Msa0271510 | Msa0866950 | 0.818862 | 1.570338e-52 | -8.615850e-47 |
| Msa0271510 | Msa0880020 | 0.829302 | 5.554227e-55 | -8.615850e-47 |
| Msa0271510 | Msa0919860 | 0.812170 | 4.851557e-51 | -8.615850e-47 |
| Msa0271510 | Msa0927580 | 0.801576 | 8.434902e-49 | -8.615850e-47 |
| Msa0271510 | Msa0934850 | 0.803141 | 4.015378e-49 | -8.615850e-47 |
| Msa0271510 | Msa0945970 | 0.821290 | 4.368816e-53 | -8.615850e-47 |
| Msa0271510 | Msa0959140 | 0.838815 | 2.298144e-57 | -8.615850e-47 |
| Msa0271510 | Msa0963270 | 0.822584 | 2.190502e-53 | -8.615850e-47 |
| Msa0271510 | Msa0970060 | 0.824918 | 6.221435e-54 | -8.615850e-47 |
| Msa0271510 | Msa0979730 | 0.802935 | 4.429511e-49 | -8.615850e-47 |
| Msa0271510 | Msa0994950 | 0.829100 | 6.219384e-55 | -8.615850e-47 |
| Msa0271510 | Msa1017630 | 0.802062 | 6.704085e-49 | -8.615850e-47 |
| Msa0271510 | Msa1026740 | 0.807696 | 4.456194e-50 | -8.615850e-47 |
| Msa0271510 | Msa1033400 | 0.842311 | 2.793857e-58 | -8.615850e-47 |
| Msa0271510 | Msa1035480 | 0.816275 | 6.012981e-52 | -8.615850e-47 |
| Msa0271510 | Msa1051880 | 0.822977 | 1.774562e-53 | -8.615850e-47 |
| Msa0271510 | Msa1073080 | 0.811161 | 8.041939e-51 | -8.615850e-47 |
| Msa0271510 | Msa1081980 | 0.853558 | 2.207449e-61 | -8.615850e-47 |
| Msa0271510 | Msa1124960 | 0.874477 | 6.548364e-68 | -8.615850e-47 |
| Msa0271510 | Msa1128060 | 0.804350 | 2.253695e-49 | -8.615850e-47 |
| Msa0271510 | Msa1170410 | 0.808775 | 2.623572e-50 | -8.615850e-47 |
| Msa0271510 | Msa1181910 | 0.823085 | 1.674304e-53 | -8.615850e-47 |
| Msa0271510 | Msa1183950 | 0.869800 | 2.360085e-66 | -8.615850e-47 |
| Msa0271510 | Msa1184910 | 0.800384 | 1.478400e-48 | -8.615850e-47 |
| Msa0271510 | Msa1204530 | 0.814230 | 1.712541e-51 | -8.615850e-47 |
| Msa0271510 | Msa1228520 | 0.819396 | 1.187274e-52 | -8.615850e-47 |
| Msa0271510 | Msa1228590 | 0.805917 | 1.059043e-49 | -8.615850e-47 |
| Msa0271510 | Msa1238840 | 0.805894 | 1.070582e-49 | -8.615850e-47 |
| Msa0271510 | Msa1244600 | 0.814744 | 1.317832e-51 | -8.615850e-47 |
| Msa0271510 | Msa1244720 | -0.805400 | 1.359559e-49 | -8.615850e-47 |
| Msa0271510 | Msa1267970 | 0.819447 | 1.156061e-52 | -8.615850e-47 |
| Msa0271510 | Msa1275050 | 0.825364 | 4.881209e-54 | -8.615850e-47 |
| Msa0271510 | Msa1296760 | 0.811995 | 5.297541e-51 | -8.615850e-47 |
| Msa0271510 | Msa1331320 | 0.815347 | 9.684406e-52 | -8.615850e-47 |
| Msa0271510 | Msa1335540 | 0.869892 | 2.202481e-66 | -8.615850e-47 |
| Msa0271510 | Msa1336290 | 0.839876 | 1.219190e-57 | -8.615850e-47 |
| Msa0271510 | Msa1346840 | 0.829099 | 6.220291e-55 | -8.615850e-47 |
| Msa0271510 | Msa1347760 | 0.819157 | 1.345597e-52 | -8.615850e-47 |
| Msa0271510 | Msa1351890 | 0.852798 | 3.643015e-61 | -8.615850e-47 |
| Msa0271510 | Msa1353980 | 0.804357 | 2.245540e-49 | -8.615850e-47 |
| Msa0271510 | Msa1356140 | 0.833801 | 4.328183e-56 | -8.615850e-47 |
| Msa0271510 | Msa1357620 | 0.849413 | 3.285826e-60 | -8.615850e-47 |
| Msa0271510 | Msa1358500 | 0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa0271510 | Msa1374470 | 0.814093 | 1.836320e-51 | -8.615850e-47 |
| Msa0271510 | Msa1391410 | 0.811984 | 5.324390e-51 | -8.615850e-47 |
| Msa0271510 | Msa1393570 | 0.831551 | 1.565296e-55 | -8.615850e-47 |
| Msa0271510 | Msa1395970 | 0.807686 | 4.477679e-50 | -8.615850e-47 |
| Msa0271510 | Msa1400870 | -0.848776 | 4.941130e-60 | -8.615850e-47 |
| Msa0271510 | Msa1401990 | 0.809170 | 2.160320e-50 | -8.615850e-47 |
| Msa0271510 | Msa1405310 | 0.869025 | 4.215933e-66 | -8.615850e-47 |
| Msa0271510 | Msa1412640 | 0.800063 | 1.718422e-48 | -8.615850e-47 |
| Msa0271510 | Msa1419690 | 0.821147 | 4.712258e-53 | -8.615850e-47 |
| Msa0271510 | Msa1432420 | 0.837450 | 5.162060e-57 | -8.615850e-47 |
| Msa0271510 | Msa1433390 | 0.802866 | 4.577907e-49 | -8.615850e-47 |
| Msa0271510 | Msa1440200 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0271510 | Msa1440950 | 0.815962 | 7.065636e-52 | -8.615850e-47 |
| Msa0271510 | Msa1453610 | 0.810865 | 9.320496e-51 | -8.615850e-47 |
| Msa0271510 | Msa1457620 | 0.836291 | 1.020047e-56 | -8.615850e-47 |
| Msa0271510 | Msa1464810 | 0.820234 | 7.639276e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271510 | MtrunA17_Chr2g0278361 | 96.591 | 264 | 8 | 1 | 1 | 264 | 1 | 263 | 0.0 | 508 |
| Msa0271510 | MtrunA17_Chr2g0278371 | 97.561 | 164 | 4 | 0 | 262 | 425 | 3 | 166 | 7.34e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271510 | AT1G15200.1 | 60.563 | 426 | 156 | 8 | 1 | 422 | 1 | 418 | 4.02e-152 | 438 |
| Msa0271510 | AT1G15200.2 | 59.861 | 431 | 156 | 9 | 1 | 422 | 1 | 423 | 1.40e-149 | 431 |
| Msa0271510 | AT1G15200.3 | 54.545 | 473 | 156 | 9 | 1 | 422 | 1 | 465 | 2.08e-142 | 415 |
| Msa0271510 | AT1G15200.4 | 56.627 | 415 | 125 | 7 | 1 | 365 | 1 | 410 | 4.09e-137 | 400 |
Find 106 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGGTGACGGTGTAAA+TGG | 0.204775 | 2_3:-2903486 | Msa0271510:CDS |
| AAGAATGCTGGGTCAGCTTT+TGG | 0.205036 | 2_3:-2903195 | Msa0271510:CDS |
| CCACTTTGGTGAGAATTAAA+AGG | 0.228725 | 2_3:+2903429 | None:intergenic |
| CCAACTCTGATCAGACTCTT+AGG | 0.236456 | 2_3:-2901763 | Msa0271510:intron |
| AAGCTTGGGTCTTCATTCTT+AGG | 0.263540 | 2_3:+2903233 | None:intergenic |
| TCGTGGCGGGCCATTACTTT+AGG | 0.269703 | 2_3:+2900658 | None:intergenic |
| AAGACCCAAGCTTGGTTAAT+AGG | 0.278596 | 2_3:-2903223 | Msa0271510:CDS |
| TGCCAATGTCGAGAAGGATT+TGG | 0.350517 | 2_3:-2900976 | Msa0271510:CDS |
| AGAAACTATGGACAAAGAAT+TGG | 0.358572 | 2_3:-2900898 | Msa0271510:CDS |
| TTGTTCCTATTAACCAAGCT+TGG | 0.375958 | 2_3:+2903218 | None:intergenic |
| TCTTCATCCAAGGGCTTGTT+AGG | 0.377589 | 2_3:+2901297 | None:intergenic |
| TCAGAATTTACAAGAAACTA+TGG | 0.385332 | 2_3:-2900910 | Msa0271510:CDS |
| TGTTCCTATTAACCAAGCTT+GGG | 0.386465 | 2_3:+2903219 | None:intergenic |
| TCTTCATTATTGCTTCCGTC+AGG | 0.395037 | 2_3:+2900834 | None:intergenic |
| ACTTTCATCTGCCGTTGTTA+AGG | 0.396725 | 2_3:-2904102 | Msa0271510:intron |
| GATGAGTTAGATGATGATTC+TGG | 0.398301 | 2_3:-2900759 | Msa0271510:CDS |
| AATTGGAGTTACTGTTTCTT+CGG | 0.408862 | 2_3:-2901709 | Msa0271510:CDS |
| CACTGCTGACAGATATCAAT+GGG | 0.415465 | 2_3:-2904513 | Msa0271510:exon |
| TAGATGATGATTCTGGTAGA+AGG | 0.416825 | 2_3:-2900752 | Msa0271510:CDS |
| AATGGTAACAAGTCTTTGTA+TGG | 0.425566 | 2_3:+2900373 | None:intergenic |
| TGGGAATGAAGGTTGGTGAT+GGG | 0.439260 | 2_3:-2903548 | Msa0271510:intron |
| TCTCGACATTGGCAAGATAC+TGG | 0.446496 | 2_3:+2900985 | None:intergenic |
| CTGTCTGAGGATGCTGATGC+TGG | 0.449149 | 2_3:-2903522 | Msa0271510:CDS |
| TTGGGAATGAAGGTTGGTGA+TGG | 0.450428 | 2_3:-2903549 | Msa0271510:intron |
| TTGTAGTTTATCCCTTGCTA+TGG | 0.451136 | 2_3:-2900600 | Msa0271510:three_prime_UTR |
| GATGAAAGTCTCCGTTTAGC+AGG | 0.457156 | 2_3:+2904116 | None:intergenic |
| ATATGCAGGATTTCCTTGAA+TGG | 0.461808 | 2_3:-2901058 | Msa0271510:intron |
| ACAAAGAATTGGATACTCAT+AGG | 0.467181 | 2_3:-2900887 | Msa0271510:CDS |
| AAGATCAACCTCCTGCTAAA+CGG | 0.472285 | 2_3:-2904127 | Msa0271510:CDS |
| CTATTTGCCTAACAAGCCCT+TGG | 0.473535 | 2_3:-2901304 | Msa0271510:CDS |
| TAATAGGAACAAAAGAATGC+TGG | 0.474916 | 2_3:-2903207 | Msa0271510:CDS |
| AAACTCACGTGACGAACAAA+GGG | 0.476069 | 2_3:+2904246 | None:intergenic |
| CAACTGGTGACGGTGTAAAT+GGG | 0.478755 | 2_3:-2903485 | Msa0271510:CDS |
| CTTCCGTTGGTCAGAGTGAT+GGG | 0.479234 | 2_3:-2903455 | Msa0271510:CDS |
| GGGAATGAAGGTTGGTGATG+GGG | 0.483415 | 2_3:-2903547 | Msa0271510:intron |
| GGAAACACAAAGGATTCAAC+TGG | 0.493451 | 2_3:-2903501 | Msa0271510:CDS |
| CTCGGAACATGTACTGTAGT+AGG | 0.494684 | 2_3:+2903263 | None:intergenic |
| TAAGACAGAAGAAAAGCAAT+TGG | 0.497515 | 2_3:-2901726 | Msa0271510:CDS |
| CAACTCTGATCAGACTCTTA+GGG | 0.502752 | 2_3:-2901762 | Msa0271510:intron |
| GTTTATCCCTTGCTATGGTT+AGG | 0.503014 | 2_3:-2900595 | Msa0271510:three_prime_UTR |
| AAGGAAGACAAGCAACTCTC+AGG | 0.514836 | 2_3:-2902997 | Msa0271510:CDS |
| CCACTGCTGACAGATATCAA+TGG | 0.518463 | 2_3:-2904514 | Msa0271510:exon |
| CTCTTCTAGACAATCCACTT+TGG | 0.526100 | 2_3:+2903415 | None:intergenic |
| CAGTATGATATGCATTGAAA+GGG | 0.526211 | 2_3:-2904581 | None:intergenic |
| CTCCAAATCCTTCTCGACAT+TGG | 0.526542 | 2_3:+2900974 | None:intergenic |
| TTGTTAGGCAAATAGTAGAT+TGG | 0.527744 | 2_3:+2901312 | None:intergenic |
| AATGGGGAGTACTGCGGCGG+CGG | 0.528494 | 2_3:-2904496 | Msa0271510:CDS |
| TTAGGCAAATAGTAGATTGG+AGG | 0.532407 | 2_3:+2901315 | None:intergenic |
| GCTTCCGTTGGTCAGAGTGA+TGG | 0.533451 | 2_3:-2903456 | Msa0271510:CDS |
| TGGAGTTACTGTTTCTTCGG+TGG | 0.533767 | 2_3:-2901706 | Msa0271510:CDS |
| GACACGTCTTCTTCATCCAA+GGG | 0.533999 | 2_3:+2901288 | None:intergenic |
| GAAACTCACGTGACGAACAA+AGG | 0.534311 | 2_3:+2904245 | None:intergenic |
| GGGAAGAAAGTGAAAGGCTC+AGG | 0.534722 | 2_3:-2901919 | Msa0271510:CDS |
| ATCGAATTATTGCGGAGAAG+AGG | 0.540147 | 2_3:+2904279 | None:intergenic |
| CTTCATTATTGCTTCCGTCA+GGG | 0.541208 | 2_3:+2900835 | None:intergenic |
| TGGTGATGGGGAGCTGTCTG+AGG | 0.541724 | 2_3:-2903535 | Msa0271510:CDS |
| TGATATCTGTCAGCAGTGGA+TGG | 0.548089 | 2_3:+2904518 | None:intergenic |
| AATAGGAACAAAAGAATGCT+GGG | 0.549273 | 2_3:-2903206 | Msa0271510:CDS |
| ACATTATCAGTAGCAGCTGC+AGG | 0.554611 | 2_3:+2900684 | None:intergenic |
| CAGTTATCAAAGAAATTCAA+TGG | 0.555332 | 2_3:-2903391 | Msa0271510:intron |
| TGTTGGAGAGGATGATATGA+TGG | 0.556616 | 2_3:-2900784 | Msa0271510:CDS |
| GATGTGGAAGATATAAATGT+TGG | 0.557283 | 2_3:-2900801 | Msa0271510:CDS |
| TAAGAATGAAGACCCAAGCT+TGG | 0.568208 | 2_3:-2903231 | Msa0271510:CDS |
| AACTAATAAGAGCAAAGAAG+AGG | 0.573040 | 2_3:-2901265 | Msa0271510:intron |
| GATCCTCGTGGTCTTCGTAA+AGG | 0.573435 | 2_3:-2904315 | Msa0271510:CDS |
| TCGAGAAGGATTTGGAGAGA+TGG | 0.581176 | 2_3:-2900968 | Msa0271510:CDS |
| TGACACGTCTTCTTCATCCA+AGG | 0.581305 | 2_3:+2901287 | None:intergenic |
| CTAGGCTGAACAAAGAGCAC+GGG | 0.584888 | 2_3:-2901939 | Msa0271510:intron |
| TAATTGATGTGTGTCGTGGC+GGG | 0.590013 | 2_3:+2900645 | None:intergenic |
| ATAATGTAGACCTAAAGTAA+TGG | 0.597645 | 2_3:-2900668 | Msa0271510:exon |
| GAAAGTCTCCGTTTAGCAGG+AGG | 0.601833 | 2_3:+2904119 | None:intergenic |
| GATTGATGAAACAATTAAGA+CGG | 0.605607 | 2_3:-2900730 | Msa0271510:CDS |
| ACAGAAGCCTAACCATAGCA+AGG | 0.607074 | 2_3:+2900588 | None:intergenic |
| AATGCAAGAAATGCAAGGAA+AGG | 0.607774 | 2_3:-2900942 | Msa0271510:CDS |
| TGAAGATGATGACGATGATG+TGG | 0.609828 | 2_3:-2900817 | Msa0271510:CDS |
| ACTGTACCAGAAATTCAGAA+AGG | 0.616763 | 2_3:-2903016 | Msa0271510:intron |
| GAGCACGGGAAGAAAGTGAA+AGG | 0.618225 | 2_3:-2901925 | Msa0271510:CDS |
| TCAGACTCTTAGGGCACGTG+TGG | 0.619163 | 2_3:-2901753 | Msa0271510:intron |
| TCATTCTTAGGCAATACCCT+CGG | 0.621285 | 2_3:+2903245 | None:intergenic |
| CCTAGGCTGAACAAAGAGCA+CGG | 0.623670 | 2_3:-2901940 | Msa0271510:intron |
| CTACTACAGTACATGTTCCG+AGG | 0.624803 | 2_3:-2903262 | Msa0271510:CDS |
| TACTACAGTACATGTTCCGA+GGG | 0.626419 | 2_3:-2903261 | Msa0271510:CDS |
| AATGGGAATGCTGCTTCCGT+TGG | 0.626746 | 2_3:-2903468 | Msa0271510:CDS |
| AGCAGCTGCAGGATCTGCAG+TGG | 0.627406 | 2_3:+2900695 | None:intergenic |
| CAGAAGCCTAACCATAGCAA+GGG | 0.628560 | 2_3:+2900589 | None:intergenic |
| ACAAAGGATTCAACTGGTGA+CGG | 0.631409 | 2_3:-2903495 | Msa0271510:CDS |
| GGCAGAATGCAAGAAATGCA+AGG | 0.632033 | 2_3:-2900947 | Msa0271510:CDS |
| ATAATTGATGTGTGTCGTGG+CGG | 0.634918 | 2_3:+2900644 | None:intergenic |
| GTATCTTGCCAATGTCGAGA+AGG | 0.637469 | 2_3:-2900982 | Msa0271510:CDS |
| CCATTGATATCTGTCAGCAG+TGG | 0.637657 | 2_3:+2904514 | None:intergenic |
| GATACTCATAGGCTCGAGCA+TGG | 0.640754 | 2_3:-2900876 | Msa0271510:CDS |
| CTTCCCATCACTCTGACCAA+CGG | 0.646114 | 2_3:+2903452 | None:intergenic |
| CGTGACGAACAAAGGGACGT+TGG | 0.649597 | 2_3:+2904253 | None:intergenic |
| AAAAGAAAATACCTTAACAA+CGG | 0.661877 | 2_3:+2904091 | None:intergenic |
| GGAAGATATAAATGTTGGAG+AGG | 0.663384 | 2_3:-2900796 | Msa0271510:CDS |
| ACTTCTTCGTCAACAACGCG+AGG | 0.664591 | 2_3:-2904436 | Msa0271510:intron |
| TTTGAATTCAGATAACTGAG+AGG | 0.666122 | 2_3:-2904344 | Msa0271510:intron |
| ATCAATGGGGAGTACTGCGG+CGG | 0.666208 | 2_3:-2904499 | Msa0271510:exon |
| TGCTGATGCTGGAAACACAA+AGG | 0.667782 | 2_3:-2903511 | Msa0271510:CDS |
| GTTGGCGAATCGAATTATTG+CGG | 0.677083 | 2_3:+2904271 | None:intergenic |
| GATATCAATGGGGAGTACTG+CGG | 0.681442 | 2_3:-2904502 | Msa0271510:exon |
| TGAATAATTGATGTGTGTCG+TGG | 0.687769 | 2_3:+2900641 | None:intergenic |
| CAAGCAACTCTCAGGAACAG+AGG | 0.688540 | 2_3:-2902989 | Msa0271510:CDS |
| GAGAGGCTTCGAGATCCTCG+TGG | 0.698160 | 2_3:-2904327 | Msa0271510:CDS |
| GCACCTTTACGAAGACCACG+AGG | 0.748381 | 2_3:+2904312 | None:intergenic |
| ACTGCTGACAGATATCAATG+GGG | 0.806650 | 2_3:-2904512 | Msa0271510:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTATTTTCATTA+TGG | - | chr2_3:2901202-2901221 | Msa0271510:intron | 10.0% |
| !! | AAGAATCTTAATATTAAAAT+GGG | + | chr2_3:2902031-2902050 | None:intergenic | 10.0% |
| !!! | ATATTAAAAACATTTGTTAA+TGG | + | chr2_3:2903146-2903165 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTTTAATTAGTG+TGG | - | chr2_3:2900780-2900799 | Msa0271510:CDS | 15.0% |
| !! | GAAGAATCTTAATATTAAAA+TGG | + | chr2_3:2902032-2902051 | None:intergenic | 15.0% |
| !! | AAAATTGATAAAATTATGCT+TGG | - | chr2_3:2902188-2902207 | Msa0271510:intron | 15.0% |
| !! | AACATGTATAAATTGAAATT+TGG | - | chr2_3:2902364-2902383 | Msa0271510:intron | 15.0% |
| !! | ACATGTATAAATTGAAATTT+GGG | - | chr2_3:2902365-2902384 | Msa0271510:intron | 15.0% |
| !!! | ATCATATTTGAAATTTAACA+GGG | + | chr2_3:2903790-2903809 | None:intergenic | 15.0% |
| !!! | TATCATATTTGAAATTTAAC+AGG | + | chr2_3:2903791-2903810 | None:intergenic | 15.0% |
| !! | CATAAATCAAATTCAATATC+TGG | + | chr2_3:2900573-2900592 | None:intergenic | 20.0% |
| !! | AAAAGAAAATACCTTAACAA+CGG | + | chr2_3:2900859-2900878 | None:intergenic | 20.0% |
| !! | ACTTGTAAATCAAAATTAAG+TGG | + | chr2_3:2900883-2900902 | None:intergenic | 20.0% |
| !!! | TGTAATGTTTGATGATTTAA+GGG | - | chr2_3:2900947-2900966 | Msa0271510:CDS | 20.0% |
| !!! | TGTTTGTTACAGATTAAATT+TGG | - | chr2_3:2900971-2900990 | Msa0271510:CDS | 20.0% |
| !! | TACAAAATAACTTATGTGTA+TGG | - | chr2_3:2901078-2901097 | Msa0271510:intron | 20.0% |
| !! | GAATTTAAGCTATAACAAAT+AGG | + | chr2_3:2901177-2901196 | None:intergenic | 20.0% |
| !!! | TTTTAACTGTATATCTTGTT+TGG | - | chr2_3:2901379-2901398 | Msa0271510:intron | 20.0% |
| !!! | TTTAACTGTATATCTTGTTT+GGG | - | chr2_3:2901380-2901399 | Msa0271510:intron | 20.0% |
| !! | AGAAAAATATAAGTGTATAG+AGG | + | chr2_3:2901901-2901920 | None:intergenic | 20.0% |
| !! | TCAAATAACATCAATCAATA+AGG | + | chr2_3:2902221-2902240 | None:intergenic | 20.0% |
| !! | CAATCTAAAAAAGTTAGTAA+GGG | + | chr2_3:2902609-2902628 | None:intergenic | 20.0% |
| !! | TCAATCTAAAAAAGTTAGTA+AGG | + | chr2_3:2902610-2902629 | None:intergenic | 20.0% |
| !! | TGATAAGTCTAATTGAAAAA+CGG | + | chr2_3:2902848-2902867 | None:intergenic | 20.0% |
| !!! | AAAGACTAAGCAATTTTATA+AGG | - | chr2_3:2903277-2903296 | Msa0271510:CDS | 20.0% |
| !!! | AAGTTTTTCTTTGATCTTTT+TGG | - | chr2_3:2903566-2903585 | Msa0271510:intron | 20.0% |
| !!! | AGTTTTTCTTTGATCTTTTT+GGG | - | chr2_3:2903567-2903586 | Msa0271510:intron | 20.0% |
| !!! | ACTTTTTGTCTTTGTATTTT+TGG | - | chr2_3:2904432-2904451 | Msa0271510:intron | 20.0% |
| !!! | CTTTTTGTCTTTGTATTTTT+GGG | - | chr2_3:2904433-2904452 | Msa0271510:intron | 20.0% |
| !!! | TCTTTCCGTTTTTGTTAATT+AGG | - | chr2_3:2900723-2900742 | Msa0271510:CDS | 25.0% |
| !!! | CTTTCCGTTTTTGTTAATTA+GGG | - | chr2_3:2900724-2900743 | Msa0271510:CDS | 25.0% |
| ! | TGAACCCTAATTAACAAAAA+CGG | + | chr2_3:2900731-2900750 | None:intergenic | 25.0% |
| !! | GTGTAATGTTTGATGATTTA+AGG | - | chr2_3:2900946-2900965 | Msa0271510:CDS | 25.0% |
| ! | AAAAGAAGTGAATTTCTCTA+TGG | - | chr2_3:2901047-2901066 | Msa0271510:CDS | 25.0% |
| ! | TGCAATTGTCTGATAATTTA+AGG | - | chr2_3:2901124-2901143 | Msa0271510:intron | 25.0% |
| ! | GCAATTGTCTGATAATTTAA+GGG | - | chr2_3:2901125-2901144 | Msa0271510:intron | 25.0% |
| ! | AAACAAACTCAGAATAGTTA+TGG | - | chr2_3:2901226-2901245 | Msa0271510:intron | 25.0% |
| ! | CAGTTATCAAAGAAATTCAA+TGG | - | chr2_3:2901556-2901575 | Msa0271510:intron | 25.0% |
| ! | ATAATCATCATTCATCAAGA+AGG | + | chr2_3:2901605-2901624 | None:intergenic | 25.0% |
| ! | TCTTGATGAATGATGATTAT+TGG | - | chr2_3:2901605-2901624 | Msa0271510:intron | 25.0% |
| ! | ATGTATGTTAGTTGATTACT+TGG | - | chr2_3:2901788-2901807 | Msa0271510:intron | 25.0% |
| ! | ATTCTTCCTATTGAAAAAGT+TGG | - | chr2_3:2902045-2902064 | Msa0271510:intron | 25.0% |
| ! | ATTAGGTTTAACAACACAAA+TGG | + | chr2_3:2902094-2902113 | None:intergenic | 25.0% |
| ! | CTAAATATCCTTAAACAAAG+TGG | + | chr2_3:2902145-2902164 | None:intergenic | 25.0% |
| !! | ATTTTATCAATTTTCAGTGC+AGG | + | chr2_3:2902182-2902201 | None:intergenic | 25.0% |
| ! | ATGTACATAAAGAAACACTT+AGG | + | chr2_3:2902465-2902484 | None:intergenic | 25.0% |
| ! | TCTTCAACTGTAAATTTATG+AGG | - | chr2_3:2903307-2903326 | Msa0271510:intron | 25.0% |
| !! | AACAAACTAGTGAAACATTT+TGG | + | chr2_3:2903349-2903368 | None:intergenic | 25.0% |
| !!! | CTGCAGGTTATTTTTATTTT+TGG | - | chr2_3:2903418-2903437 | Msa0271510:CDS | 25.0% |
| ! | GTCTCAATAAAATGTGAATA+TGG | + | chr2_3:2903455-2903474 | None:intergenic | 25.0% |
| !! | TTGATTGAATGTAATTTTGC+AGG | - | chr2_3:2903597-2903616 | Msa0271510:intron | 25.0% |
| ! | TCTGAGTATCAAAAACAAAT+TGG | - | chr2_3:2903936-2903955 | Msa0271510:intron | 25.0% |
| ! | CTGAGTATCAAAAACAAATT+GGG | - | chr2_3:2903937-2903956 | Msa0271510:intron | 25.0% |
| ! | TGAGTATCAAAAACAAATTG+GGG | - | chr2_3:2903938-2903957 | Msa0271510:intron | 25.0% |
| ! | TCAGAATTTACAAGAAACTA+TGG | - | chr2_3:2904037-2904056 | Msa0271510:intron | 25.0% |
| ! | GATTGATGAAACAATTAAGA+CGG | - | chr2_3:2904217-2904236 | Msa0271510:intron | 25.0% |
| ! | ATAATGTAGACCTAAAGTAA+TGG | - | chr2_3:2904279-2904298 | Msa0271510:CDS | 25.0% |
| !!! | TTTGCTGTATTTGTTTTTCT+AGG | - | chr2_3:2904511-2904530 | Msa0271510:exon | 25.0% |
| !!! | TTGCTGTATTTGTTTTTCTA+GGG | - | chr2_3:2904512-2904531 | Msa0271510:exon | 25.0% |
| TTTGAATTCAGATAACTGAG+AGG | - | chr2_3:2900603-2900622 | Msa0271510:three_prime_UTR | 30.0% | |
| TCACACTTCAATTGAGTTTA+TGG | - | chr2_3:2900757-2900776 | Msa0271510:CDS | 30.0% | |
| TTGTCTGATAATTTAAGGGA+TGG | - | chr2_3:2901129-2901148 | Msa0271510:intron | 30.0% | |
| TGTCTGATAATTTAAGGGAT+GGG | - | chr2_3:2901130-2901149 | Msa0271510:intron | 30.0% | |
| GGCTGTTATAGCTTAAATTA+AGG | - | chr2_3:2901151-2901170 | Msa0271510:intron | 30.0% | |
| ! | TATATCTTGTTTGGGAATGA+AGG | - | chr2_3:2901388-2901407 | Msa0271510:intron | 30.0% |
| ! | AAGCTTTGTATCTAATGCTA+TGG | - | chr2_3:2901632-2901651 | Msa0271510:intron | 30.0% |
| TAATAGGAACAAAAGAATGC+TGG | - | chr2_3:2901740-2901759 | Msa0271510:CDS | 30.0% | |
| AATAGGAACAAAAGAATGCT+GGG | - | chr2_3:2901741-2901760 | Msa0271510:CDS | 30.0% | |
| ATATAAGTGTATAGAGGAGA+GGG | + | chr2_3:2901895-2901914 | None:intergenic | 30.0% | |
| AATATAAGTGTATAGAGGAG+AGG | + | chr2_3:2901896-2901915 | None:intergenic | 30.0% | |
| !!! | TCACAACCAACTTTTTCAAT+AGG | + | chr2_3:2902054-2902073 | None:intergenic | 30.0% |
| ! | TATTGAAAAAGTTGGTTGTG+AGG | - | chr2_3:2902053-2902072 | Msa0271510:intron | 30.0% |
| TTAACAACACAAATGGCTAT+AGG | + | chr2_3:2902087-2902106 | None:intergenic | 30.0% | |
| TATTGTCAAGTGTATGCATT+AGG | + | chr2_3:2902111-2902130 | None:intergenic | 30.0% | |
| ! | CACTTAATCCACTTTGTTTA+AGG | - | chr2_3:2902134-2902153 | Msa0271510:intron | 30.0% |
| ACATCAATCAATAAGGACAA+TGG | + | chr2_3:2902214-2902233 | None:intergenic | 30.0% | |
| TTGATGAATACATCATTGTC+TGG | - | chr2_3:2902270-2902289 | Msa0271510:intron | 30.0% | |
| TGCACAAGATCAATATGTTA+AGG | - | chr2_3:2902538-2902557 | Msa0271510:intron | 30.0% | |
| ! | ACTTTGATAGCCAATTGTAT+AGG | + | chr2_3:2902666-2902685 | None:intergenic | 30.0% |
| GATTGCATACAATCTTAAGA+TGG | - | chr2_3:2902704-2902723 | Msa0271510:intron | 30.0% | |
| ATCTTAAGATGGATGATAGT+TGG | - | chr2_3:2902715-2902734 | Msa0271510:intron | 30.0% | |
| TCTTAAGATGGATGATAGTT+GGG | - | chr2_3:2902716-2902735 | Msa0271510:intron | 30.0% | |
| ATTGCATGCACAGTAATAAA+TGG | + | chr2_3:2902877-2902896 | None:intergenic | 30.0% | |
| ATTTCGAGCTTCAAATAGAA+GGG | + | chr2_3:2902907-2902926 | None:intergenic | 30.0% | |
| TATTTCGAGCTTCAAATAGA+AGG | + | chr2_3:2902908-2902927 | None:intergenic | 30.0% | |
| TTCTTTGCAGAGTTTCATTA+TGG | - | chr2_3:2903118-2903137 | Msa0271510:intron | 30.0% | |
| TAAGACAGAAGAAAAGCAAT+TGG | - | chr2_3:2903221-2903240 | Msa0271510:CDS | 30.0% | |
| ! | AATTGGAGTTACTGTTTCTT+CGG | - | chr2_3:2903238-2903257 | Msa0271510:CDS | 30.0% |
| ! | AATGTGAATATGGACACTTT+TGG | + | chr2_3:2903445-2903464 | None:intergenic | 30.0% |
| ! | TATTGAAGCAATTTGATGAC+TGG | - | chr2_3:2903506-2903525 | Msa0271510:CDS | 30.0% |
| TTGTTAGGCAAATAGTAGAT+TGG | + | chr2_3:2903638-2903657 | None:intergenic | 30.0% | |
| AACTAATAAGAGCAAAGAAG+AGG | - | chr2_3:2903682-2903701 | Msa0271510:intron | 30.0% | |
| ! | TTCTTGCATTTTTCCATTCA+AGG | + | chr2_3:2903905-2903924 | None:intergenic | 30.0% |
| AGAAACTATGGACAAAGAAT+TGG | - | chr2_3:2904049-2904068 | Msa0271510:intron | 30.0% | |
| ACAAAGAATTGGATACTCAT+AGG | - | chr2_3:2904060-2904079 | Msa0271510:intron | 30.0% | |
| ! | TCAGGGATTTTTCTTTTCTT+GGG | + | chr2_3:2904098-2904117 | None:intergenic | 30.0% |
| AAGAAAAGAAAAATCCCTGA+CGG | - | chr2_3:2904098-2904117 | Msa0271510:intron | 30.0% | |
| GATGTGGAAGATATAAATGT+TGG | - | chr2_3:2904146-2904165 | Msa0271510:CDS | 30.0% | |
| ! | TTTTCCCCTTTGTGGTTTAA+GGG | + | chr2_3:2901347-2901366 | None:intergenic | 35.0% |
| CCACTTTGGTGAGAATTAAA+AGG | + | chr2_3:2901521-2901540 | None:intergenic | 35.0% | |
| !! | CCTTTTAATTCTCACCAAAG+TGG | - | chr2_3:2901518-2901537 | Msa0271510:intron | 35.0% |
| TGTTCCTATTAACCAAGCTT+GGG | + | chr2_3:2901731-2901750 | None:intergenic | 35.0% | |
| TTGTTCCTATTAACCAAGCT+TGG | + | chr2_3:2901732-2901751 | None:intergenic | 35.0% | |
| ACTGTACCAGAAATTCAGAA+AGG | - | chr2_3:2901931-2901950 | Msa0271510:CDS | 35.0% | |
| TGTCTTCCTTTCTGAATTTC+TGG | + | chr2_3:2901940-2901959 | None:intergenic | 35.0% | |
| TGAAATCTCTCGTAAAGACT+TGG | - | chr2_3:2902238-2902257 | Msa0271510:intron | 35.0% | |
| ! | TTTGGGACTTCTATTTAAGC+AGG | - | chr2_3:2902382-2902401 | Msa0271510:intron | 35.0% |
| CTTCTATTTAAGCAGGATTC+AGG | - | chr2_3:2902389-2902408 | Msa0271510:intron | 35.0% | |
| TATTTAAGCAGGATTCAGGA+GGG | - | chr2_3:2902393-2902412 | Msa0271510:intron | 35.0% | |
| TAAAGAAACACTTAGGCATG+CGG | + | chr2_3:2902458-2902477 | None:intergenic | 35.0% | |
| TGAAAATAAGGGCTTGCAAA+GGG | + | chr2_3:2902571-2902590 | None:intergenic | 35.0% | |
| ! | TTGATAGCCAATTGTATAGG+TGG | + | chr2_3:2902663-2902682 | None:intergenic | 35.0% |
| TTGGGATTACAAATTCCGAA+CGG | - | chr2_3:2902734-2902753 | Msa0271510:intron | 35.0% | |
| TAACATGCTTGTTCGAACTA+TGG | + | chr2_3:2902776-2902795 | None:intergenic | 35.0% | |
| TTACTGTGCATGCAATTTCT+AGG | - | chr2_3:2902881-2902900 | Msa0271510:intron | 35.0% | |
| AAGATAGAGAGAAGACAAAG+TGG | + | chr2_3:2902941-2902960 | None:intergenic | 35.0% | |
| ! | TTCAGGGTATTATGAAGCTT+TGG | + | chr2_3:2902980-2902999 | None:intergenic | 35.0% |
| TTAGGCAAATAGTAGATTGG+AGG | + | chr2_3:2903635-2903654 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTCAAACTT+AGG | - | chr2_3:2903696-2903715 | Msa0271510:intron | 35.0% | |
| TGTTCATCTTTGCAATATGC+AGG | - | chr2_3:2903875-2903894 | Msa0271510:intron | 35.0% | |
| ATATGCAGGATTTCCTTGAA+TGG | - | chr2_3:2903889-2903908 | Msa0271510:intron | 35.0% | |
| ATGGAAAAATGCAAGAAGAG+AGG | - | chr2_3:2903908-2903927 | Msa0271510:intron | 35.0% | |
| AATGCAAGAAATGCAAGGAA+AGG | - | chr2_3:2904005-2904024 | Msa0271510:intron | 35.0% | |
| ! | GTCAGGGATTTTTCTTTTCT+TGG | + | chr2_3:2904099-2904118 | None:intergenic | 35.0% |
| GGAAGATATAAATGTTGGAG+AGG | - | chr2_3:2904151-2904170 | Msa0271510:CDS | 35.0% | |
| GATGAGTTAGATGATGATTC+TGG | - | chr2_3:2904188-2904207 | Msa0271510:intron | 35.0% | |
| TAGATGATGATTCTGGTAGA+AGG | - | chr2_3:2904195-2904214 | Msa0271510:intron | 35.0% | |
| TGAATAATTGATGTGTGTCG+TGG | + | chr2_3:2904309-2904328 | None:intergenic | 35.0% | |
| TTGTAGTTTATCCCTTGCTA+TGG | - | chr2_3:2904347-2904366 | Msa0271510:intron | 35.0% | |
| CACTGCTGACAGATATCAAT+GGG | - | chr2_3:2900434-2900453 | Msa0271510:three_prime_UTR | 40.0% | |
| ACTGCTGACAGATATCAATG+GGG | - | chr2_3:2900435-2900454 | Msa0271510:three_prime_UTR | 40.0% | |
| ATCGAATTATTGCGGAGAAG+AGG | + | chr2_3:2900671-2900690 | None:intergenic | 40.0% | |
| GTTGGCGAATCGAATTATTG+CGG | + | chr2_3:2900679-2900698 | None:intergenic | 40.0% | |
| AAACTCACGTGACGAACAAA+GGG | + | chr2_3:2900704-2900723 | None:intergenic | 40.0% | |
| AAGATCAACCTCCTGCTAAA+CGG | - | chr2_3:2900820-2900839 | Msa0271510:CDS | 40.0% | |
| ACTTTCATCTGCCGTTGTTA+AGG | - | chr2_3:2900845-2900864 | Msa0271510:CDS | 40.0% | |
| ! | GTTTTCCCCTTTGTGGTTTA+AGG | + | chr2_3:2901348-2901367 | None:intergenic | 40.0% |
| ! | TCTTGTTTGGGAATGAAGGT+TGG | - | chr2_3:2901392-2901411 | Msa0271510:intron | 40.0% |
| GGAAACACAAAGGATTCAAC+TGG | - | chr2_3:2901446-2901465 | Msa0271510:intron | 40.0% | |
| ACAAAGGATTCAACTGGTGA+CGG | - | chr2_3:2901452-2901471 | Msa0271510:intron | 40.0% | |
| CTCTTCTAGACAATCCACTT+TGG | + | chr2_3:2901535-2901554 | None:intergenic | 40.0% | |
| TATGGTCTGTTCTTCATGTC+AGG | - | chr2_3:2901650-2901669 | Msa0271510:intron | 40.0% | |
| TACTACAGTACATGTTCCGA+GGG | - | chr2_3:2901686-2901705 | Msa0271510:CDS | 40.0% | |
| TCATTCTTAGGCAATACCCT+CGG | + | chr2_3:2901705-2901724 | None:intergenic | 40.0% | |
| AAGCTTGGGTCTTCATTCTT+AGG | + | chr2_3:2901717-2901736 | None:intergenic | 40.0% | |
| TAAGAATGAAGACCCAAGCT+TGG | - | chr2_3:2901716-2901735 | Msa0271510:CDS | 40.0% | |
| AAGACCCAAGCTTGGTTAAT+AGG | - | chr2_3:2901724-2901743 | Msa0271510:CDS | 40.0% | |
| TGATATGTCCTTGTACTCGT+TGG | - | chr2_3:2902326-2902345 | Msa0271510:intron | 40.0% | |
| GAAATCTACCAACGAGTACA+AGG | + | chr2_3:2902337-2902356 | None:intergenic | 40.0% | |
| ! | ACTCGTTGGTAGATTTCGAT+AGG | - | chr2_3:2902340-2902359 | Msa0271510:intron | 40.0% |
| CTATTTAAGCAGGATTCAGG+AGG | - | chr2_3:2902392-2902411 | Msa0271510:intron | 40.0% | |
| CTGAAAATAAGGGCTTGCAA+AGG | + | chr2_3:2902572-2902591 | None:intergenic | 40.0% | |
| !!! | CTTTGCAAGCCCTTATTTTC+AGG | - | chr2_3:2902570-2902589 | Msa0271510:intron | 40.0% |
| GGGCAAACAACTTAATAGGA+GGG | + | chr2_3:2902638-2902657 | None:intergenic | 40.0% | |
| TGGGCAAACAACTTAATAGG+AGG | + | chr2_3:2902639-2902658 | None:intergenic | 40.0% | |
| GGTTGGGCAAACAACTTAAT+AGG | + | chr2_3:2902642-2902661 | None:intergenic | 40.0% | |
| AGCCAATTGTATAGGTGGTT+GGG | + | chr2_3:2902658-2902677 | None:intergenic | 40.0% | |
| TAGCCAATTGTATAGGTGGT+TGG | + | chr2_3:2902659-2902678 | None:intergenic | 40.0% | |
| AGTTCGAACAAGCATGTTAC+AGG | - | chr2_3:2902777-2902796 | Msa0271510:intron | 40.0% | |
| GCGAACAGATTGCTGAAAAA+CGG | - | chr2_3:2903061-2903080 | Msa0271510:intron | 40.0% | |
| AACAGATTGCTGAAAAACGG+AGG | - | chr2_3:2903064-2903083 | Msa0271510:intron | 40.0% | |
| CTAAGAGTCTGATCAGAGTT+GGG | + | chr2_3:2903186-2903205 | None:intergenic | 40.0% | |
| CAACTCTGATCAGACTCTTA+GGG | - | chr2_3:2903185-2903204 | Msa0271510:CDS | 40.0% | |
| CTTCATTATTGCTTCCGTCA+GGG | + | chr2_3:2904115-2904134 | None:intergenic | 40.0% | |
| TCTTCATTATTGCTTCCGTC+AGG | + | chr2_3:2904116-2904135 | None:intergenic | 40.0% | |
| ! | TGAAGATGATGACGATGATG+TGG | - | chr2_3:2904130-2904149 | Msa0271510:CDS | 40.0% |
| TGTTGGAGAGGATGATATGA+TGG | - | chr2_3:2904163-2904182 | Msa0271510:intron | 40.0% | |
| ATAATTGATGTGTGTCGTGG+CGG | + | chr2_3:2904306-2904325 | None:intergenic | 40.0% | |
| ! | GTTTATCCCTTGCTATGGTT+AGG | - | chr2_3:2904352-2904371 | Msa0271510:intron | 40.0% |
| TGATATCTGTCAGCAGTGGA+TGG | + | chr2_3:2900432-2900451 | None:intergenic | 45.0% | |
| CCATTGATATCTGTCAGCAG+TGG | + | chr2_3:2900436-2900455 | None:intergenic | 45.0% | |
| CCACTGCTGACAGATATCAA+TGG | - | chr2_3:2900433-2900452 | Msa0271510:three_prime_UTR | 45.0% | |
| !! | GATATCAATGGGGAGTACTG+CGG | - | chr2_3:2900445-2900464 | Msa0271510:three_prime_UTR | 45.0% |
| GAAACTCACGTGACGAACAA+AGG | + | chr2_3:2900705-2900724 | None:intergenic | 45.0% | |
| GATGAAAGTCTCCGTTTAGC+AGG | + | chr2_3:2900834-2900853 | None:intergenic | 45.0% | |
| TTGTGGTTTAAGGGTCAGGA+AGG | + | chr2_3:2901338-2901357 | None:intergenic | 45.0% | |
| TCCTGACCCTTAAACCACAA+AGG | - | chr2_3:2901338-2901357 | Msa0271510:intron | 45.0% | |
| CCTGACCCTTAAACCACAAA+GGG | - | chr2_3:2901339-2901358 | Msa0271510:intron | 45.0% | |
| CTGACCCTTAAACCACAAAG+GGG | - | chr2_3:2901340-2901359 | Msa0271510:intron | 45.0% | |
| ! | CACTTCTGTTTTCCCCTTTG+TGG | + | chr2_3:2901355-2901374 | None:intergenic | 45.0% |
| !! | TTGGGAATGAAGGTTGGTGA+TGG | - | chr2_3:2901398-2901417 | Msa0271510:intron | 45.0% |
| !! | TGGGAATGAAGGTTGGTGAT+GGG | - | chr2_3:2901399-2901418 | Msa0271510:intron | 45.0% |
| TGCTGATGCTGGAAACACAA+AGG | - | chr2_3:2901436-2901455 | Msa0271510:intron | 45.0% | |
| !! | TCAACTGGTGACGGTGTAAA+TGG | - | chr2_3:2901461-2901480 | Msa0271510:intron | 45.0% |
| !! | CAACTGGTGACGGTGTAAAT+GGG | - | chr2_3:2901462-2901481 | Msa0271510:intron | 45.0% |
| CTCGGAACATGTACTGTAGT+AGG | + | chr2_3:2901687-2901706 | None:intergenic | 45.0% | |
| CTACTACAGTACATGTTCCG+AGG | - | chr2_3:2901685-2901704 | Msa0271510:CDS | 45.0% | |
| ! | AAGAATGCTGGGTCAGCTTT+TGG | - | chr2_3:2901752-2901771 | Msa0271510:CDS | 45.0% |
| ! | AGAATGCTGGGTCAGCTTTT+GGG | - | chr2_3:2901753-2901772 | Msa0271510:intron | 45.0% |
| AAGGAAGACAAGCAACTCTC+AGG | - | chr2_3:2901950-2901969 | Msa0271510:intron | 45.0% | |
| GCCACTAGGCCTGAAAATAA+GGG | + | chr2_3:2902582-2902601 | None:intergenic | 45.0% | |
| TGCCACTAGGCCTGAAAATA+AGG | + | chr2_3:2902583-2902602 | None:intergenic | 45.0% | |
| TTAGTAAGGGAACTGCCACT+AGG | + | chr2_3:2902596-2902615 | None:intergenic | 45.0% | |
| TGCCCAACCACCTATACAAT+TGG | - | chr2_3:2902653-2902672 | Msa0271510:intron | 45.0% | |
| ATACCCTGAAACTCCTTCCT+AGG | - | chr2_3:2902990-2903009 | Msa0271510:CDS | 45.0% | |
| AGATTGCTGAAAAACGGAGG+AGG | - | chr2_3:2903067-2903086 | Msa0271510:intron | 45.0% | |
| GATTGCTGAAAAACGGAGGA+GGG | - | chr2_3:2903068-2903087 | Msa0271510:intron | 45.0% | |
| CCTAAGAGTCTGATCAGAGT+TGG | + | chr2_3:2903187-2903206 | None:intergenic | 45.0% | |
| CCAACTCTGATCAGACTCTT+AGG | - | chr2_3:2903184-2903203 | Msa0271510:CDS | 45.0% | |
| ! | TGGAGTTACTGTTTCTTCGG+TGG | - | chr2_3:2903241-2903260 | Msa0271510:CDS | 45.0% |
| !! | TCACTAGTTTGTTCCACAGC+TGG | - | chr2_3:2903356-2903375 | Msa0271510:intron | 45.0% |
| CAGTAATAGATGTCCAGCTG+TGG | + | chr2_3:2903372-2903391 | None:intergenic | 45.0% | |
| !! | ATAACCTGCAGAGCATTGCA+TGG | + | chr2_3:2903409-2903428 | None:intergenic | 45.0% |
| CTATTTGCCTAACAAGCCCT+TGG | - | chr2_3:2903643-2903662 | Msa0271510:intron | 45.0% | |
| ! | TCTTCATCCAAGGGCTTGTT+AGG | + | chr2_3:2903653-2903672 | None:intergenic | 45.0% |
| GACACGTCTTCTTCATCCAA+GGG | + | chr2_3:2903662-2903681 | None:intergenic | 45.0% | |
| TGACACGTCTTCTTCATCCA+AGG | + | chr2_3:2903663-2903682 | None:intergenic | 45.0% | |
| TCTCGACATTGGCAAGATAC+TGG | + | chr2_3:2903965-2903984 | None:intergenic | 45.0% | |
| GTATCTTGCCAATGTCGAGA+AGG | - | chr2_3:2903965-2903984 | Msa0271510:intron | 45.0% | |
| TGCCAATGTCGAGAAGGATT+TGG | - | chr2_3:2903971-2903990 | Msa0271510:intron | 45.0% | |
| CTCCAAATCCTTCTCGACAT+TGG | + | chr2_3:2903976-2903995 | None:intergenic | 45.0% | |
| TCGAGAAGGATTTGGAGAGA+TGG | - | chr2_3:2903979-2903998 | Msa0271510:intron | 45.0% | |
| GGCAGAATGCAAGAAATGCA+AGG | - | chr2_3:2904000-2904019 | Msa0271510:intron | 45.0% | |
| ACATTATCAGTAGCAGCTGC+AGG | + | chr2_3:2904266-2904285 | None:intergenic | 45.0% | |
| TAATTGATGTGTGTCGTGGC+GGG | + | chr2_3:2904305-2904324 | None:intergenic | 45.0% | |
| CAGAAGCCTAACCATAGCAA+GGG | + | chr2_3:2904361-2904380 | None:intergenic | 45.0% | |
| ACAGAAGCCTAACCATAGCA+AGG | + | chr2_3:2904362-2904381 | None:intergenic | 45.0% | |
| ACTTCTTCGTCAACAACGCG+AGG | - | chr2_3:2900511-2900530 | Msa0271510:three_prime_UTR | 50.0% | |
| GATCCTCGTGGTCTTCGTAA+AGG | - | chr2_3:2900632-2900651 | Msa0271510:three_prime_UTR | 50.0% | |
| GAAAGTCTCCGTTTAGCAGG+AGG | + | chr2_3:2900831-2900850 | None:intergenic | 50.0% | |
| ! | TCAGGAAGGCACATGAGTAG+GGG | + | chr2_3:2901324-2901343 | None:intergenic | 50.0% |
| ! | GTCAGGAAGGCACATGAGTA+GGG | + | chr2_3:2901325-2901344 | None:intergenic | 50.0% |
| CCCTTTGTGGTTTAAGGGTC+AGG | + | chr2_3:2901342-2901361 | None:intergenic | 50.0% | |
| !! | GGGAATGAAGGTTGGTGATG+GGG | - | chr2_3:2901400-2901419 | Msa0271510:intron | 50.0% |
| ! | AATGGGAATGCTGCTTCCGT+TGG | - | chr2_3:2901479-2901498 | Msa0271510:intron | 50.0% |
| CTTCCGTTGGTCAGAGTGAT+GGG | - | chr2_3:2901492-2901511 | Msa0271510:intron | 50.0% | |
| CTTCCCATCACTCTGACCAA+CGG | + | chr2_3:2901498-2901517 | None:intergenic | 50.0% | |
| !! | TCAGCTTTTGGGAACTCTGG+AGG | - | chr2_3:2901764-2901783 | Msa0271510:intron | 50.0% |
| CAAGCAACTCTCAGGAACAG+AGG | - | chr2_3:2901958-2901977 | Msa0271510:intron | 50.0% | |
| AGAAACACTTAGGCATGCGG+TGG | + | chr2_3:2902455-2902474 | None:intergenic | 50.0% | |
| !!! | GCCCTTATTTTCAGGCCTAG+TGG | - | chr2_3:2902578-2902597 | Msa0271510:intron | 50.0% |
| ! | TCCGAACGGACATGTTTTCG+AGG | - | chr2_3:2902748-2902767 | Msa0271510:intron | 50.0% |
| CCCTCGAAAACATGTCCGTT+CGG | + | chr2_3:2902752-2902771 | None:intergenic | 50.0% | |
| ! | CCGAACGGACATGTTTTCGA+GGG | - | chr2_3:2902749-2902768 | Msa0271510:intron | 50.0% |
| CAGCCTAGGAAGGAGTTTCA+GGG | + | chr2_3:2902996-2903015 | None:intergenic | 50.0% | |
| TCAGCCTAGGAAGGAGTTTC+AGG | + | chr2_3:2902997-2903016 | None:intergenic | 50.0% | |
| GCTCTTTGTTCAGCCTAGGA+AGG | + | chr2_3:2903006-2903025 | None:intergenic | 50.0% | |
| CCTAGGCTGAACAAAGAGCA+CGG | - | chr2_3:2903007-2903026 | Msa0271510:CDS | 50.0% | |
| ! | CTAGGCTGAACAAAGAGCAC+GGG | - | chr2_3:2903008-2903027 | Msa0271510:CDS | 50.0% |
| GAGCACGGGAAGAAAGTGAA+AGG | - | chr2_3:2903022-2903041 | Msa0271510:intron | 50.0% | |
| GGGAAGAAAGTGAAAGGCTC+AGG | - | chr2_3:2903028-2903047 | Msa0271510:intron | 50.0% | |
| TGAAAAACGGAGGAGGGACT+TGG | - | chr2_3:2903074-2903093 | Msa0271510:intron | 50.0% | |
| CATACCATGCAATGCTCTGC+AGG | - | chr2_3:2903402-2903421 | Msa0271510:CDS | 50.0% | |
| GATACTCATAGGCTCGAGCA+TGG | - | chr2_3:2904071-2904090 | Msa0271510:intron | 50.0% | |
| !! | ATCAATGGGGAGTACTGCGG+CGG | - | chr2_3:2900448-2900467 | Msa0271510:three_prime_UTR | 55.0% |
| GCACCTTTACGAAGACCACG+AGG | + | chr2_3:2900638-2900657 | None:intergenic | 55.0% | |
| CGTGACGAACAAAGGGACGT+TGG | + | chr2_3:2900697-2900716 | None:intergenic | 55.0% | |
| ! | GGTCAGGAAGGCACATGAGT+AGG | + | chr2_3:2901326-2901345 | None:intergenic | 55.0% |
| CTGTCTGAGGATGCTGATGC+TGG | - | chr2_3:2901425-2901444 | Msa0271510:intron | 55.0% | |
| GCTTCCGTTGGTCAGAGTGA+TGG | - | chr2_3:2901491-2901510 | Msa0271510:intron | 55.0% | |
| !! | GGGTCAGCTTTTGGGAACTC+TGG | - | chr2_3:2901761-2901780 | Msa0271510:intron | 55.0% |
| CCGTGCTCTTTGTTCAGCCT+AGG | + | chr2_3:2903010-2903029 | None:intergenic | 55.0% | |
| ! | AAACGGAGGAGGGACTTGGT+AGG | - | chr2_3:2903078-2903097 | Msa0271510:intron | 55.0% |
| TCAGACTCTTAGGGCACGTG+TGG | - | chr2_3:2903194-2903213 | Msa0271510:CDS | 55.0% | |
| !! | TCGTGGCGGGCCATTACTTT+AGG | + | chr2_3:2904292-2904311 | None:intergenic | 55.0% |
| GAGAGGCTTCGAGATCCTCG+TGG | - | chr2_3:2900620-2900639 | Msa0271510:three_prime_UTR | 60.0% | |
| !! | TGGTGATGGGGAGCTGTCTG+AGG | - | chr2_3:2901412-2901431 | Msa0271510:intron | 60.0% |
| AGCAGCTGCAGGATCTGCAG+TGG | + | chr2_3:2904255-2904274 | None:intergenic | 60.0% | |
| !! | AATGGGGAGTACTGCGGCGG+CGG | - | chr2_3:2900451-2900470 | Msa0271510:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2900381 | 2904588 | 2900381 | ID=Msa0271510;Name=Msa0271510 |
| chr2_3 | mRNA | 2900381 | 2904588 | 2900381 | ID=Msa0271510-mRNA-1;Parent=Msa0271510;Name=Msa0271510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=71|1|1|1|1|1|10|290|425 |
| chr2_3 | exon | 2900381 | 2901072 | 2900381 | ID=Msa0271510-mRNA-1:exon:1445;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2901266 | 2901350 | 2901266 | ID=Msa0271510-mRNA-1:exon:1444;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2901671 | 2901771 | 2901671 | ID=Msa0271510-mRNA-1:exon:1443;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2901874 | 2901957 | 2901874 | ID=Msa0271510-mRNA-1:exon:1442;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2902957 | 2903028 | 2902957 | ID=Msa0271510-mRNA-1:exon:1441;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2903184 | 2903297 | 2903184 | ID=Msa0271510-mRNA-1:exon:1440;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2903392 | 2903559 | 2903392 | ID=Msa0271510-mRNA-1:exon:1439;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2904103 | 2904171 | 2904103 | ID=Msa0271510-mRNA-1:exon:1438;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2904254 | 2904355 | 2904254 | ID=Msa0271510-mRNA-1:exon:1437;Parent=Msa0271510-mRNA-1 |
| chr2_3 | exon | 2904437 | 2904588 | 2904437 | ID=Msa0271510-mRNA-1:exon:1436;Parent=Msa0271510-mRNA-1 |
| chr2_3 | five_prime_UTR | 2904518 | 2904588 | 2904518 | ID=Msa0271510-mRNA-1:five_prime_utr;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2904437 | 2904517 | 2904437 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2904254 | 2904355 | 2904254 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2904103 | 2904171 | 2904103 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2903392 | 2903559 | 2903392 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2903184 | 2903297 | 2903184 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2902957 | 2903028 | 2902957 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2901874 | 2901957 | 2901874 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2901671 | 2901771 | 2901671 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2901266 | 2901350 | 2901266 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | CDS | 2900671 | 2901072 | 2900671 | ID=Msa0271510-mRNA-1:cds;Parent=Msa0271510-mRNA-1 |
| chr2_3 | three_prime_UTR | 2900381 | 2900670 | 2900381 | ID=Msa0271510-mRNA-1:three_prime_utr;Parent=Msa0271510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
