AlfalfaGEDB | Msa0928300

M. sativa cultivar zhongmu-4 / Msa0928300

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0007568 GO:0008150 GO:0008374 GO:0009987 GO:0010150 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071554 GO:0090693 GO:0099402
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928300	XP_024641806.1	94.250	400	23	0	1	400	1	400	0.0	778

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928300	sp\|Q9FHM0\|TBL17_ARATH	54.726	402	140	6	8	400	3	371	1.01e-142	419

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0174450	Msa0928300	0.806962	6.375549e-50	-8.615850e-47
Msa0405680	Msa0928300	0.800605	1.332268e-48	-8.615850e-47
Msa0528570	Msa0928300	0.803496	3.390507e-49	-8.615850e-47
Msa0611210	Msa0928300	0.828264	9.901518e-55	-8.615850e-47
Msa0651550	Msa0928300	0.812710	3.696703e-51	-8.615850e-47
Msa0741650	Msa0928300	0.807672	4.507702e-50	-8.615850e-47
Msa0835490	Msa0928300	0.803349	3.637790e-49	-8.615850e-47
Msa0928300	Msa0992260	0.855159	7.604403e-62	-8.615850e-47
Msa0928300	Msa1414640	0.809311	2.014475e-50	-8.615850e-47
Msa0928300	Msa1415540	0.805088	1.580514e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928300	MtrunA17_Chr6g0476041	94.250	400	23	0	1	400	1	400	0.0	778
Msa0928300	MtrunA17_Chr1g0188191	54.274	468	142	9	4	400	1	467	1.49e-164	474
Msa0928300	MtrunA17_Chr6g0456691	35.907	259	153	6	147	400	63	313	1.81e-51	178
Msa0928300	MtrunA17_Chr6g0451321	33.555	301	188	7	108	400	58	354	4.11e-47	167
Msa0928300	MtrunA17_Chr7g0226991	36.066	244	147	5	163	400	53	293	6.45e-46	163
Msa0928300	MtrunA17_Chr8g0391481	36.515	241	146	5	165	400	25	263	9.71e-46	162
Msa0928300	MtrunA17_Chr8g0347321	35.000	240	149	5	165	400	93	329	1.88e-45	162
Msa0928300	MtrunA17_Chr6g0456681	33.582	268	154	7	150	400	42	302	1.44e-44	160
Msa0928300	MtrunA17_Chr5g0414061	34.694	245	139	5	167	400	94	328	5.27e-44	159
Msa0928300	MtrunA17_Chr8g0387921	31.818	242	151	6	167	400	74	309	4.01e-43	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0928300	AT5G51640.1	54.726	402	140	6	8	400	3	371	1.03e-143	419
Msa0928300	AT4G25360.1	53.652	397	165	5	17	400	18	408	2.31e-143	419
Msa0928300	AT4G25360.2	53.652	397	165	5	17	400	18	408	2.31e-143	419
Msa0928300	AT4G23790.1	38.367	245	139	6	164	400	76	316	1.14e-52	182
Msa0928300	AT1G01430.1	36.610	295	167	8	117	400	47	332	1.43e-51	179
Msa0928300	AT5G15900.1	36.100	241	144	5	167	400	67	304	1.62e-50	176
Msa0928300	AT5G15900.2	36.100	241	144	5	167	400	86	323	2.82e-50	176
Msa0928300	AT1G70230.1	38.211	246	124	5	167	400	79	308	3.01e-48	170
Msa0928300	AT4G11090.1	36.214	243	146	6	164	400	76	315	8.83e-48	169
Msa0928300	AT5G15890.1	29.902	408	249	12	20	400	19	416	1.16e-46	168

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Find 119 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAAGGCATGAATTGG+AGG	0.517381	6_2:+73459347	Msa0928300:exon
AAATTGGATATATGATTCAT+CGG	0.533210	6_2:+73460047	Msa0928300:CDS
AACATTACCTTTCATAATTG+AGG	0.395469	6_2:-73459830	None:intergenic
AACTAATAGGGTTAAATGAA+AGG	0.542286	6_2:+73459334	Msa0928300:exon
AACTTCCTCGGATCAAATCG+TGG	0.554784	6_2:-73460189	None:intergenic
AAGTGTAGTACACTGTCATG+AGG	0.744002	6_2:+73458142	Msa0928300:five_prime_UTR
AATCATATATCCAATTTCCA+TGG	0.570027	6_2:-73460041	None:intergenic
AATGAAAGGCATGAATTGGA+GGG	0.588865	6_2:+73459348	Msa0928300:exon
AATTGGATATATGATTCATC+GGG	0.526023	6_2:+73460048	Msa0928300:CDS
AATTTCATGAACATCTCATC+AGG	0.424178	6_2:-73460607	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTATGACACTTCTATTCAA+AGG	-	chr6_2:73458754-73458773	None:intergenic	30.0%
TATTGTATAAAGTTGTGGAG+TGG	+	chr6_2:73459249-73459268	Msa0928300:five_prime_UTR	30.0%
GAAAATATAATCCGAGAAAG+TGG	-	chr6_2:73459406-73459425	None:intergenic	30.0%
GAAGTTTGCATATCAATGTT+TGG	-	chr6_2:73459622-73459641	None:intergenic	30.0%
TTCAAAAGAACCTATTCCAA+TGG	+	chr6_2:73459795-73459814	Msa0928300:CDS	30.0%
ACCAATTCCTCAATTATGAA+AGG	+	chr6_2:73459823-73459842	Msa0928300:CDS	30.0%
ACCTTTCATAATTGAGGAAT+TGG	-	chr6_2:73459827-73459846	None:intergenic	30.0%
ATTTCATGAACATCTCATCA+GGG	-	chr6_2:73460609-73460628	None:intergenic	30.0%
AATTTCATGAACATCTCATC+AGG	-	chr6_2:73460610-73460629	None:intergenic	30.0%
ATCTTGAACAATGAGATAGT+TGG	+	chr6_2:73460694-73460713	Msa0928300:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	73458090	73460989	73458090	ID=Msa0928300;Name=Msa0928300
chr6_2	mRNA	73458090	73460989	73458090	ID=Msa0928300-mRNA-1;Parent=Msa0928300;Name=Msa0928300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=597\|1\|1\|1\|0.66\|0.5\|4\|80\|411
chr6_2	exon	73458090	73458336	73458090	ID=Msa0928300-mRNA-1:exon:12511;Parent=Msa0928300-mRNA-1
chr6_2	exon	73458999	73459844	73458999	ID=Msa0928300-mRNA-1:exon:12512;Parent=Msa0928300-mRNA-1
chr6_2	exon	73460028	73460302	73460028	ID=Msa0928300-mRNA-1:exon:12513;Parent=Msa0928300-mRNA-1
chr6_2	exon	73460445	73460989	73460445	ID=Msa0928300-mRNA-1:exon:12514;Parent=Msa0928300-mRNA-1
chr6_2	five_prime_UTR	73458090	73458336	73458090	ID=Msa0928300-mRNA-1:five_prime_utr;Parent=Msa0928300-mRNA-1
chr6_2	five_prime_UTR	73458999	73459348	73458999	ID=Msa0928300-mRNA-1:five_prime_utr;Parent=Msa0928300-mRNA-1
chr6_2	CDS	73459349	73459844	73459349	ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2	CDS	73460028	73460302	73460028	ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2	CDS	73460445	73460909	73460445	ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2	three_prime_UTR	73460910	73460989	73460910	ID=Msa0928300-mRNA-1:three_prime_utr;Parent=Msa0928300-mRNA-1

Gene Sequence

>Msa0928300

ATGAAAGGCATGAATTGGAGGGTTGCATCTCCCAAAGGTTCTTCAAATCCGAAACCACTTTCTCGGATTATATTTTCAGTTGGAGTAGTGGCAGTATTCATAACTTTTGCTTCATGGTTTTTTCTATCATACCCTATTGGTTCAACTGTTCATGGTTATTTCAATGGTGTAGAGAGTTCACAAACTTCTGGTTTATCAGTCTCTCAGAAAATCAATACAACTTCTGTTGATCTTCACAAGAATTCAACTTTAGATTCAGTAGATAATAAACCAAACATTGATATGCAAACTTCCATAGTTTCCAGTGGTGTGTTAAGTGATAATAGTAGCAAGATAGAACAAATTGATACTAATTCAAATTCGCAACCACCCTTGAGTGAATCTGCTTCACCGAAAATCGTTCCAGTAACTAAGGATGTGAGTGGCTTAGAAACTTCTGATTCGGCTTCAAAAGAACCTATTCCAATGGCTAGTACCAATTCCTCAATTATGAAAGGTTGTGATCTGTACCATGGAAATTGGATATATGATTCATCGGGACCGTTATACACAAACAAGTCCTGCCCTGTATTGACACAGACGCAGAATTGTCAGGGTAATGGGAGGCCTGATAAGGATTATGAGAACTGGCGATGGAAGCCTTTTCAATGTGATATCCCACGATTTGATCCGAGGAAGTTTTTGGAGCTTATGAGAGGCAAGACATTGGCTTTCATTGGAGATTCTGTGGCTCGAAACCAGATGGAGTCCATGATGTGTATTCTTTGGCAGGTAGAGGAACCGAAAAATCAGGGAACTCGCAACATGCAGCGGTATTATTTTGAGTCAACATCTGTAACGATTGTTCGGATATGGTCGTCATGGCTTGTCAAACACAATTCAAAACCATTCGACTTTGCTCCAGCTGGTGTGGAGAAAATCTATCTCGAATCCCCTGATGAGATGTTCATGAAATTTCTCCCAACATTTGATGTGGTTGTTCTTTCATCTGGTCATTGGTTTACTAAACAATCAGTATACATCTTGAACAATGAGATAGTTGGAGGACAATTGTGGTGGCCGGACAAGTCTCGGCATGCGAAGATCAACAGCATCGAAGCATTTGGTATATCTGTTGAAACAATTCTCACTGCCCTTGTTACGCATCCGAATTATACCGGACTTACAATTTTACGTTCCTATTCACCCGATCATTATGAGTTATTATATAGAAATAATTTCCATAAACTCTACTAG

Protein sequence

>Msa0928300

MKGMNWRVASPKGSSNPKPLSRIIFSVGVVAVFITFASWFFLSYPIGSTVHGYFNGVESSQTSGLSVSQKINTTSVDLHKNSTLDSVDNKPNIDMQTSIVSSGVLSDNSSKIEQIDTNSNSQPPLSESASPKIVPVTKDVSGLETSDSASKEPIPMASTNSSIMKGCDLYHGNWIYDSSGPLYTNKSCPVLTQTQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMMCILWQVEEPKNQGTRNMQRYYFESTSVTIVRIWSSWLVKHNSKPFDFAPAGVEKIYLESPDEMFMKFLPTFDVVVLSSGHWFTKQSVYILNNEIVGGQLWWPDKSRHAKINSIEAFGISVETILTALVTHPNYTGLTILRSYSPDHYELLYRNNFHKLY*