AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928300 MtrunA17_Chr6g0476041 94.250 400 23 0 1 400 1 400 0.0 778
Msa0928300 MtrunA17_Chr1g0188191 54.274 468 142 9 4 400 1 467 1.49e-164 474
Msa0928300 MtrunA17_Chr6g0456691 35.907 259 153 6 147 400 63 313 1.81e-51 178
Msa0928300 MtrunA17_Chr6g0451321 33.555 301 188 7 108 400 58 354 4.11e-47 167
Msa0928300 MtrunA17_Chr7g0226991 36.066 244 147 5 163 400 53 293 6.45e-46 163
Msa0928300 MtrunA17_Chr8g0391481 36.515 241 146 5 165 400 25 263 9.71e-46 162
Msa0928300 MtrunA17_Chr8g0347321 35.000 240 149 5 165 400 93 329 1.88e-45 162
Msa0928300 MtrunA17_Chr6g0456681 33.582 268 154 7 150 400 42 302 1.44e-44 160
Msa0928300 MtrunA17_Chr5g0414061 34.694 245 139 5 167 400 94 328 5.27e-44 159
Msa0928300 MtrunA17_Chr8g0387921 31.818 242 151 6 167 400 74 309 4.01e-43 155
Msa0928300 MtrunA17_Chr2g0283851 32.653 245 146 5 168 400 56 293 3.14e-42 153
Msa0928300 MtrunA17_Chr3g0140371 33.613 238 152 4 166 400 17 251 6.63e-42 151
Msa0928300 MtrunA17_Chr5g0414051 34.025 241 147 5 167 400 75 310 2.80e-41 151
Msa0928300 MtrunA17_Chr5g0414091 32.540 252 141 6 165 400 83 321 2.93e-41 151
Msa0928300 MtrunA17_Chr5g0414041 34.855 241 146 5 167 400 87 323 1.10e-37 141
Msa0928300 MtrunA17_Chr7g0221271 43.066 137 75 1 157 290 69 205 1.35e-37 135
Msa0928300 MtrunA17_Chr7g0221291 51.456 103 50 0 157 259 69 171 3.34e-35 127
Msa0928300 MtrunA17_Chr7g0259711 31.984 247 146 7 167 400 91 328 1.29e-33 130
Msa0928300 MtrunA17_Chr8g0360521 32.479 234 123 8 163 385 67 276 6.14e-33 128
Msa0928300 MtrunA17_Chr3g0126021 38.421 190 100 6 166 340 128 315 3.25e-32 127
Msa0928300 MtrunA17_Chr7g0269991 31.474 251 140 10 167 400 137 372 4.69e-32 126
Msa0928300 MtrunA17_Chr1g0210771 31.008 258 147 7 152 398 44 281 4.46e-31 122
Msa0928300 MtrunA17_Chr7g0258851 30.980 255 154 7 157 399 239 483 7.86e-31 124
Msa0928300 MtrunA17_Chr8g0384151 33.333 192 115 5 160 340 83 272 1.18e-29 119
Msa0928300 MtrunA17_Chr2g0287901 31.048 248 149 6 166 400 96 334 1.21e-29 119
Msa0928300 MtrunA17_Chr1g0175671 29.779 272 150 8 148 399 155 405 1.30e-29 120
Msa0928300 MtrunA17_Chr4g0071391 28.287 251 157 5 139 374 76 318 1.67e-29 119
Msa0928300 MtrunA17_Chr1g0171171 36.216 185 108 5 154 335 40 217 2.99e-29 117
Msa0928300 MtrunA17_Chr5g0413271 34.483 174 108 3 167 337 145 315 4.91e-29 118
Msa0928300 MtrunA17_Chr3g0113671 41.481 135 73 3 165 294 104 237 1.93e-28 116
Msa0928300 MtrunA17_Chr3g0097891 50.000 90 45 0 166 255 30 119 2.17e-28 114
Msa0928300 MtrunA17_Chr1g0209921 35.429 175 97 5 167 334 44 209 2.51e-28 112
Msa0928300 MtrunA17_Chr1g0213281 29.134 254 159 7 159 400 167 411 6.40e-28 115
Msa0928300 MtrunA17_Chr5g0437601 38.806 134 78 3 165 294 81 214 8.48e-28 114
Msa0928300 MtrunA17_Chr3g0085071 39.568 139 81 1 155 290 34 172 9.09e-28 112
Msa0928300 MtrunA17_Chr5g0430371 29.412 255 158 8 151 400 45 282 1.33e-27 113
Msa0928300 MtrunA17_Chr8g0384421 29.412 272 148 11 157 399 123 379 3.26e-27 112
Msa0928300 MtrunA17_Chr3g0105301 31.280 211 132 5 155 362 34 234 8.31e-27 110
Msa0928300 MtrunA17_Chr3g0085081 47.253 91 48 0 165 255 29 119 9.87e-27 109
Msa0928300 MtrunA17_Chr3g0091031 47.253 91 48 0 165 255 29 119 1.91e-26 108
Msa0928300 MtrunA17_Chr8g0368461 31.606 193 107 5 167 337 178 367 1.30e-25 108
Msa0928300 MtrunA17_Chr4g0005491 31.633 196 117 6 158 342 53 242 1.58e-25 107
Msa0928300 MtrunA17_Chr4g0070341 27.914 326 189 13 101 399 72 378 1.89e-25 107
Msa0928300 MtrunA17_Chr2g0314801 46.667 90 47 1 167 255 33 122 2.42e-25 105
Msa0928300 MtrunA17_Chr5g0437291 37.500 144 69 4 165 294 163 299 5.18e-25 107
Msa0928300 MtrunA17_Chr4g0041011 44.211 95 53 0 161 255 41 135 1.15e-24 104
Msa0928300 MtrunA17_Chr2g0325481 47.191 89 47 0 167 255 50 138 1.53e-24 103
Msa0928300 MtrunA17_Chr7g0243301 37.313 134 78 2 167 294 64 197 1.83e-24 104
Msa0928300 MtrunA17_Chr2g0314791 30.667 225 129 6 162 374 24 233 2.69e-24 102
Msa0928300 MtrunA17_Chr5g0413851 44.792 96 51 1 160 255 35 128 4.54e-24 102
Msa0928300 MtrunA17_Chr4g0006991 38.636 132 77 3 167 294 86 217 5.64e-24 103
Msa0928300 MtrunA17_Chr3g0114101 36.364 132 80 3 167 294 89 220 1.55e-23 102
Msa0928300 MtrunA17_Chr4g0068111 31.016 187 117 4 159 334 106 291 2.20e-23 101
Msa0928300 MtrunA17_Chr7g0242701 30.899 178 115 4 125 294 40 217 5.11e-23 100
Msa0928300 MtrunA17_Chr4g0005481 34.815 135 82 3 165 294 106 239 5.26e-23 100
Msa0928300 MtrunA17_Chr2g0283581 45.161 93 50 1 163 255 38 129 9.05e-22 95.9
Msa0928300 MtrunA17_Chr4g0045941 43.820 89 50 0 167 255 33 121 2.96e-21 94.4
Msa0928300 MtrunA17_Chr1g0178081 37.815 119 63 3 158 273 46 156 5.11e-20 90.9
Msa0928300 MtrunA17_Chr4g0045951 30.726 179 109 5 164 337 42 210 6.41e-19 87.8
Msa0928300 MtrunA17_Chr4g0049421 28.571 182 111 6 167 334 48 224 4.43e-18 85.5
Msa0928300 MtrunA17_Chr2g0287911 48.214 56 22 1 167 222 61 109 2.27e-14 68.9
Msa0928300 MtrunA17_Chr7g0221281 27.820 133 89 3 271 400 2 130 4.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928300 AT5G51640.1 54.726 402 140 6 8 400 3 371 1.03e-143 419
Msa0928300 AT4G25360.1 53.652 397 165 5 17 400 18 408 2.31e-143 419
Msa0928300 AT4G25360.2 53.652 397 165 5 17 400 18 408 2.31e-143 419
Msa0928300 AT4G23790.1 38.367 245 139 6 164 400 76 316 1.14e-52 182
Msa0928300 AT1G01430.1 36.610 295 167 8 117 400 47 332 1.43e-51 179
Msa0928300 AT5G15900.1 36.100 241 144 5 167 400 67 304 1.62e-50 176
Msa0928300 AT5G15900.2 36.100 241 144 5 167 400 86 323 2.82e-50 176
Msa0928300 AT1G70230.1 38.211 246 124 5 167 400 79 308 3.01e-48 170
Msa0928300 AT4G11090.1 36.214 243 146 6 164 400 76 315 8.83e-48 169
Msa0928300 AT5G15890.1 29.902 408 249 12 20 400 19 416 1.16e-46 168
Msa0928300 AT3G02440.1 33.333 237 153 3 167 400 127 361 4.05e-46 165
Msa0928300 AT3G02440.2 33.333 237 153 3 167 400 135 369 4.12e-46 166
Msa0928300 AT3G28150.1 35.000 240 148 4 167 400 70 307 2.93e-44 159
Msa0928300 AT4G01080.1 36.000 250 150 4 154 400 78 320 4.38e-44 159
Msa0928300 AT3G62390.2 40.000 190 94 5 91 262 47 234 2.53e-34 132
Msa0928300 AT3G62390.1 40.000 190 94 5 91 262 47 234 6.92e-34 132
Msa0928300 AT5G20590.2 32.129 249 149 6 164 400 138 378 3.20e-33 128
Msa0928300 AT5G20590.1 32.129 249 149 6 164 400 138 378 2.30e-32 128
Msa0928300 AT5G49340.1 28.571 259 164 5 155 400 88 338 3.94e-31 124
Msa0928300 AT5G19160.2 29.032 248 158 6 166 402 98 338 6.04e-31 121
Msa0928300 AT1G73140.1 32.530 249 133 7 165 398 65 293 1.03e-30 122
Msa0928300 AT3G06080.1 29.134 254 150 7 166 402 102 342 1.26e-30 120
Msa0928300 AT3G12060.1 26.364 330 214 6 81 399 120 431 2.10e-30 123
Msa0928300 AT1G60790.1 29.217 332 199 11 80 393 100 413 3.60e-30 122
Msa0928300 AT3G06080.2 29.365 252 148 7 166 400 102 340 9.20e-30 120
Msa0928300 AT5G19160.1 29.150 247 155 6 166 400 98 336 1.55e-29 119
Msa0928300 AT2G31110.3 34.043 188 111 4 156 338 32 211 7.34e-29 114
Msa0928300 AT2G30900.2 35.602 191 105 6 154 334 25 207 1.73e-28 113
Msa0928300 AT2G40160.3 32.086 187 122 3 164 345 74 260 3.74e-28 113
Msa0928300 AT5G06700.1 27.049 366 212 11 74 399 140 490 4.89e-28 116
Msa0928300 AT2G31110.2 34.043 188 111 4 156 338 32 211 5.06e-28 114
Msa0928300 AT2G30900.1 35.602 191 105 6 154 334 25 207 1.43e-27 112
Msa0928300 AT2G40160.1 32.086 187 122 3 164 345 74 260 1.57e-27 113
Msa0928300 AT2G40160.2 32.086 187 122 3 164 345 74 260 1.66e-27 114
Msa0928300 AT3G54260.1 37.143 175 94 6 167 335 51 215 8.32e-27 110
Msa0928300 AT2G40150.1 38.636 132 77 2 167 294 71 202 1.07e-26 111
Msa0928300 AT3G55990.1 33.838 198 111 6 108 294 83 271 1.84e-26 111
Msa0928300 AT1G48880.1 29.008 262 148 9 160 399 106 351 3.43e-26 110
Msa0928300 AT2G30010.1 49.451 91 44 1 167 255 56 146 8.25e-26 108
Msa0928300 AT5G64020.1 30.651 261 141 10 167 400 57 304 9.10e-26 108
Msa0928300 AT2G30010.2 49.451 91 44 1 167 255 99 189 9.17e-26 108
Msa0928300 AT5G01360.2 36.364 132 80 2 167 294 36 167 1.50e-25 107
Msa0928300 AT5G01360.1 36.364 132 80 2 167 294 92 223 1.91e-25 107
Msa0928300 AT2G37720.1 31.606 193 113 4 164 339 140 330 3.87e-25 107
Msa0928300 AT5G06230.3 29.104 268 154 8 157 401 52 306 6.17e-25 104
Msa0928300 AT3G14850.2 43.956 91 51 0 165 255 32 122 2.95e-24 103
Msa0928300 AT3G11030.1 35.556 135 81 3 165 294 104 237 3.10e-24 104
Msa0928300 AT5G20680.6 27.941 272 170 8 148 399 99 364 4.16e-24 104
Msa0928300 AT5G20680.4 27.941 272 170 8 148 399 193 458 5.28e-24 104
Msa0928300 AT5G20680.1 27.941 272 170 8 148 399 193 458 5.28e-24 104
Msa0928300 AT5G20680.3 27.941 272 170 8 148 399 193 458 5.28e-24 104
Msa0928300 AT5G20680.5 27.941 272 170 8 148 399 193 458 5.28e-24 104
Msa0928300 AT5G20680.2 27.941 272 170 8 148 399 175 440 5.76e-24 104
Msa0928300 AT2G40320.1 34.839 155 93 4 144 294 62 212 6.95e-24 103
Msa0928300 AT5G06230.2 28.839 267 154 8 157 400 11 264 8.16e-24 102
Msa0928300 AT5G06230.1 28.839 267 154 8 157 400 52 305 1.24e-23 102
Msa0928300 AT1G78710.2 48.889 90 43 2 167 255 31 118 4.86e-23 99.0
Msa0928300 AT2G42570.1 29.796 245 140 9 167 400 47 270 1.05e-22 99.0
Msa0928300 AT1G78710.1 48.889 90 43 2 167 255 38 125 1.07e-22 99.0
Msa0928300 AT5G58600.2 44.444 90 49 1 167 255 66 155 1.49e-22 97.4
Msa0928300 AT2G34070.1 30.726 179 110 3 166 339 64 233 1.57e-22 99.0
Msa0928300 AT1G29050.1 31.461 178 108 4 166 338 60 228 2.23e-22 98.2
Msa0928300 AT5G01620.3 29.018 224 133 6 77 294 47 250 2.50e-22 99.0
Msa0928300 AT5G58600.1 28.638 213 140 5 167 374 66 271 3.93e-22 97.8
Msa0928300 AT5G01620.2 34.559 136 82 3 165 294 108 242 6.87e-22 97.8
Msa0928300 AT5G01620.1 34.559 136 82 3 165 294 108 242 6.87e-22 97.8
Msa0928300 AT2G38320.1 29.150 247 149 11 165 398 57 290 1.09e-21 96.7
Msa0928300 AT5G64470.4 26.000 250 157 8 167 399 55 293 2.42e-21 94.4
Msa0928300 AT5G64470.1 26.000 250 157 8 167 399 55 293 3.00e-21 94.4
Msa0928300 AT2G14530.1 28.058 278 176 9 140 400 35 305 5.72e-21 94.7
Msa0928300 AT5G64470.3 26.000 250 157 8 167 399 55 293 5.90e-21 94.4
Msa0928300 AT5G64470.2 26.000 250 157 8 167 399 55 293 6.15e-21 94.4
Msa0928300 AT3G11570.1 27.966 236 136 9 183 399 98 318 8.02e-19 88.2
Msa0928300 AT2G38320.2 28.972 214 127 10 197 398 7 207 3.37e-14 73.6

Find 119 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGTTTCTAGTAGAGTTTA+TGG 0.148796 6_2:-73460894 None:intergenic
GTGTGAAATTTGAAACTAAT+AGG 0.237420 6_2:+73459321 Msa0928300:five_prime_UTR
ACCTTTCATAATTGAGGAAT+TGG 0.286895 6_2:-73459824 None:intergenic
CCACTCACATCCTTAGTTAC+TGG 0.316877 6_2:-73459751 None:intergenic
CCTATTGGTTCAACTGTTCA+TGG 0.321255 6_2:+73459481 Msa0928300:CDS
TAACACACCACTGGAAACTA+TGG 0.325407 6_2:-73459641 None:intergenic
TGTGAAATTTGAAACTAATA+GGG 0.328035 6_2:+73459322 Msa0928300:five_prime_UTR
GGCAAGACATTGGCTTTCAT+TGG 0.338972 6_2:+73460228 Msa0928300:CDS
GTAGAGAGTTCACAAACTTC+TGG 0.339283 6_2:+73459517 Msa0928300:CDS
GTGATCTGTACCATGGAAAT+TGG 0.343434 6_2:+73460031 Msa0928300:CDS
CAAATCCGAAACCACTTTCT+CGG 0.344080 6_2:+73459392 Msa0928300:CDS
GATTGATTGTAATTTGATAT+TGG 0.347788 6_2:+73459012 Msa0928300:five_prime_UTR
CGCAGAATTGTCAGGGTAAT+GGG 0.351851 6_2:+73460112 Msa0928300:CDS
TTGTTCTTTCATCTGGTCAT+TGG 0.356280 6_2:+73460650 Msa0928300:CDS
ACTGTTCATGGTTATTTCAA+TGG 0.363276 6_2:+73459493 Msa0928300:CDS
CAGTTCTCATAATCCTTATC+AGG 0.368015 6_2:-73460138 None:intergenic
CCATGAACAGTTGAACCAAT+AGG 0.375978 6_2:-73459481 None:intergenic
GGGTATTGCAGGTTTGTATA+TGG 0.377289 6_2:+73458988 Msa0928300:intron
TTTCGGATTTGAAGAACCTT+TGG 0.380304 6_2:-73459380 None:intergenic
GAAGTTTGCATATCAATGTT+TGG 0.381749 6_2:-73459619 None:intergenic
GTTAAATGAAAGGCATGAAT+TGG 0.394314 6_2:+73459344 Msa0928300:exon
AACATTACCTTTCATAATTG+AGG 0.395469 6_2:-73459830 None:intergenic
TTGGTACTAGCCATTGGAAT+AGG 0.395908 6_2:-73459805 None:intergenic
ATAATCCGAGAAAGTGGTTT+CGG 0.398592 6_2:-73459397 None:intergenic
CTGTAACGATTGTTCGGATA+TGG 0.400519 6_2:+73460506 Msa0928300:CDS
GATGTGGTTGTTCTTTCATC+TGG 0.403835 6_2:+73460643 Msa0928300:CDS
GTCAGATAAGACCGTAATTA+CGG 0.404031 6_2:-73458175 None:intergenic
ATTGTAAGTCCGGTATAATT+CGG 0.405960 6_2:-73460820 None:intergenic
GTGGAGCTTTGCCGTAATTA+CGG 0.407428 6_2:+73458164 Msa0928300:five_prime_UTR
CTCATAATGATCGGGTGAAT+AGG 0.408578 6_2:-73460851 None:intergenic
TTGAAGTGTCAGTGCTAGAT+AGG 0.409910 6_2:+73459215 Msa0928300:five_prime_UTR
TTCTGCGTCTGTGTCAATAC+AGG 0.412465 6_2:-73460096 None:intergenic
TGGCTTAGAAACTTCTGATT+CGG 0.414109 6_2:+73459771 Msa0928300:CDS
CATGAACAGTTGAACCAATA+GGG 0.420888 6_2:-73459480 None:intergenic
TTCGGATTTGAAGAACCTTT+GGG 0.424140 6_2:-73459379 None:intergenic
AATTTCATGAACATCTCATC+AGG 0.424178 6_2:-73460607 None:intergenic
GACACAGACGCAGAATTGTC+AGG 0.428093 6_2:+73460104 Msa0928300:CDS
ACGCAGAATTGTCAGGGTAA+TGG 0.429115 6_2:+73460111 Msa0928300:CDS
ATCAACAGCATCGAAGCATT+TGG 0.448769 6_2:+73460757 Msa0928300:CDS
TGACAAGCTCTGACTAGAAA+TGG 0.450870 6_2:-73458306 None:intergenic
AGTCCATGATGTGTATTCTT+TGG 0.459251 6_2:+73460277 Msa0928300:CDS
CATGATGTGTATTCTTTGGC+AGG 0.461287 6_2:+73460281 Msa0928300:CDS
GGAACGTAAAATTGTAAGTC+CGG 0.466692 6_2:-73460830 None:intergenic
TATAATAACTCATAATGATC+GGG 0.475027 6_2:-73460859 None:intergenic
CTGATAAGGATTATGAGAAC+TGG 0.478521 6_2:+73460139 Msa0928300:CDS
GGCTTTCATTGGAGATTCTG+TGG 0.480446 6_2:+73460239 Msa0928300:CDS
GGGTAATGGGAGGCCTGATA+AGG 0.480971 6_2:+73460125 Msa0928300:CDS
CAACATCTGTAACGATTGTT+CGG 0.481747 6_2:+73460500 Msa0928300:CDS
CAGGACTTGTTTGTGTATAA+CGG 0.485025 6_2:-73460072 None:intergenic
GAACAACCACATCAAATGTT+GGG 0.487105 6_2:-73460633 None:intergenic
GAAAATCGTTCCAGTAACTA+AGG 0.487845 6_2:+73459741 Msa0928300:CDS
CCATTCGACTTTGCTCCAGC+TGG 0.491739 6_2:+73460559 Msa0928300:CDS
TATAATTCGGATGCGTAACA+AGG 0.495223 6_2:-73460807 None:intergenic
TACACATCATGGACTCCATC+TGG 0.495858 6_2:-73460269 None:intergenic
TAGTATTTACACCTGTGCTC+TGG 0.499410 6_2:+73458207 Msa0928300:five_prime_UTR
ATATAATAACTCATAATGAT+CGG 0.508043 6_2:-73460860 None:intergenic
CGTGGGATATCACATTGAAA+AGG 0.508376 6_2:-73460171 None:intergenic
GTCAGAGCTTGTCAACATCT+AGG 0.509218 6_2:+73458315 Msa0928300:five_prime_UTR
AGAACAACCACATCAAATGT+TGG 0.510831 6_2:-73460634 None:intergenic
CGACTTTGCTCCAGCTGGTG+TGG 0.512087 6_2:+73460564 Msa0928300:CDS
TTCGCATGCCGAGACTTGTC+CGG 0.512674 6_2:-73460733 None:intergenic
TCCACCGTCCCTATCGTACC+TGG 0.514086 6_2:-73459081 None:intergenic
GAAAATATAATCCGAGAAAG+TGG 0.515657 6_2:-73459403 None:intergenic
AAATGAAAGGCATGAATTGG+AGG 0.517381 6_2:+73459347 Msa0928300:exon
GAGGAATTGGTACTAGCCAT+TGG 0.518967 6_2:-73459811 None:intergenic
TGTGGTGGCCGGACAAGTCT+CGG 0.519743 6_2:+73460725 Msa0928300:CDS
AATTGGATATATGATTCATC+GGG 0.526023 6_2:+73460048 Msa0928300:CDS
AAATTGGATATATGATTCAT+CGG 0.533210 6_2:+73460047 Msa0928300:CDS
CGGTGAAGCAGATTCACTCA+AGG 0.533844 6_2:-73459719 None:intergenic
GTTACGCATCCGAATTATAC+CGG 0.535945 6_2:+73460811 Msa0928300:CDS
ACATAGACACCAGGTACGAT+AGG 0.541174 6_2:+73459072 Msa0928300:five_prime_UTR
AACTAATAGGGTTAAATGAA+AGG 0.542286 6_2:+73459334 Msa0928300:exon
ATTATCACTTAACACACCAC+TGG 0.544862 6_2:-73459650 None:intergenic
TTCTGTGGCTCGAAACCAGA+TGG 0.548549 6_2:+73460254 Msa0928300:CDS
GCTTATATTGTATAAAGTTG+TGG 0.553525 6_2:+73459244 Msa0928300:five_prime_UTR
AACTTCCTCGGATCAAATCG+TGG 0.554784 6_2:-73460189 None:intergenic
ATCTTGAACAATGAGATAGT+TGG 0.557072 6_2:+73460694 Msa0928300:CDS
CTGCCAAAGAATACACATCA+TGG 0.557593 6_2:-73460280 None:intergenic
ACCAATTCCTCAATTATGAA+AGG 0.561135 6_2:+73459823 Msa0928300:CDS
AATCATATATCCAATTTCCA+TGG 0.570027 6_2:-73460041 None:intergenic
CGTCTGTGTCAATACAGGGC+AGG 0.571653 6_2:-73460091 None:intergenic
TGGAGGACAATTGTGGTGGC+CGG 0.575277 6_2:+73460714 Msa0928300:CDS
CATAGACACCAGGTACGATA+GGG 0.579434 6_2:+73459073 Msa0928300:five_prime_UTR
TTCAAAAGAACCTATTCCAA+TGG 0.579577 6_2:+73459795 Msa0928300:CDS
TTGAACAATGAGATAGTTGG+AGG 0.581139 6_2:+73460697 Msa0928300:CDS
TATTGTATAAAGTTGTGGAG+TGG 0.583729 6_2:+73459249 Msa0928300:five_prime_UTR
TATGTAACTGACCAGAGCAC+AGG 0.588633 6_2:-73458218 None:intergenic
AATGAAAGGCATGAATTGGA+GGG 0.588865 6_2:+73459348 Msa0928300:exon
AGGATTATGAGAACTGGCGA+TGG 0.593464 6_2:+73460145 Msa0928300:CDS
GCTTATGAGAGGCAAGACAT+TGG 0.598849 6_2:+73460218 Msa0928300:CDS
ACTTCCTCGGATCAAATCGT+GGG 0.605348 6_2:-73460188 None:intergenic
TTGTTCGGATATGGTCGTCA+TGG 0.605364 6_2:+73460515 Msa0928300:CDS
ATTTGACATGTTATGAAACG+TGG 0.607397 6_2:+73460968 Msa0928300:three_prime_UTR
TGGAGGGTTGCATCTCCCAA+AGG 0.609098 6_2:+73459364 Msa0928300:CDS
GGTGAAGCAGATTCACTCAA+GGG 0.615265 6_2:-73459718 None:intergenic
ATAATTCGGATGCGTAACAA+GGG 0.622296 6_2:-73460806 None:intergenic
ATTTCATGAACATCTCATCA+GGG 0.622889 6_2:-73460606 None:intergenic
TCTGCGTCTGTGTCAATACA+GGG 0.623845 6_2:-73460095 None:intergenic
TTTCATGAACATCTCATCAG+GGG 0.631554 6_2:-73460605 None:intergenic
ATTTCTCCCAACATTTGATG+TGG 0.634735 6_2:+73460627 Msa0928300:CDS
AGGGAACTCGCAACATGCAG+CGG 0.641200 6_2:+73460464 Msa0928300:CDS
AGATAGTTGGAGGACAATTG+TGG 0.641699 6_2:+73460707 Msa0928300:CDS
CCAGCTGGAGCAAAGTCGAA+TGG 0.642013 6_2:-73460559 None:intergenic
GCACTGACACTTCAAATCGA+AGG 0.642040 6_2:-73459207 None:intergenic
ACCAGGTACGATAGGGACGG+TGG 0.643768 6_2:+73459080 Msa0928300:five_prime_UTR
ATATCCCACGATTTGATCCG+AGG 0.645127 6_2:+73460184 Msa0928300:CDS
GTAGGTTGTGATCTGTACCA+TGG 0.645340 6_2:+73460024 Msa0928300:intron
CCAGTAACTAAGGATGTGAG+TGG 0.650449 6_2:+73459751 Msa0928300:CDS
ACACAGACGCAGAATTGTCA+GGG 0.651197 6_2:+73460105 Msa0928300:CDS
TGTAGTACACTGTCATGAGG+TGG 0.652447 6_2:+73458145 Msa0928300:five_prime_UTR
CAAACTTCCATAGTTTCCAG+TGG 0.658747 6_2:+73459634 Msa0928300:CDS
TTATCAAACACATAGACACC+AGG 0.668900 6_2:+73459063 Msa0928300:five_prime_UTR
GACACCAGGTACGATAGGGA+CGG 0.681363 6_2:+73459077 Msa0928300:five_prime_UTR
TAGTTGGAGGACAATTGTGG+TGG 0.686111 6_2:+73460710 Msa0928300:CDS
GAAGCAGATTCACTCAAGGG+TGG 0.697647 6_2:-73459715 None:intergenic
AGAATTGTCAGGGTAATGGG+AGG 0.700086 6_2:+73460115 Msa0928300:CDS
GTATTTATAGTTGTACGCAG+AGG 0.710306 6_2:+73458257 Msa0928300:five_prime_UTR
ACTTTAAGAAGTAATCAATG+AGG 0.719208 6_2:-73458095 None:intergenic
AAGTGTAGTACACTGTCATG+AGG 0.744002 6_2:+73458142 Msa0928300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTGTTTTATCTATTT+TGG + chr6_2:73458964-73458983 Msa0928300:intron 10.0%
!!! GTTATTTTTTTTTTTTTTGA+AGG - chr6_2:73460943-73460962 None:intergenic 10.0%
!!! AAAAAATTGTTTTTTCTTTG+TGG + chr6_2:73458455-73458474 Msa0928300:intron 15.0%
!!! AAAAATTGTTTTTTCTTTGT+GGG + chr6_2:73458456-73458475 Msa0928300:intron 15.0%
!! TTATGCAAATAAAATTTGTA+AGG - chr6_2:73460318-73460337 None:intergenic 15.0%
!! ATATAATAACTCATAATGAT+CGG - chr6_2:73460863-73460882 None:intergenic 15.0%
!!! AAAATTGTTTTTTCTTTGTG+GGG + chr6_2:73458457-73458476 Msa0928300:intron 20.0%
!!! TTAATGTTACTTTTTCTTTC+TGG + chr6_2:73458774-73458793 Msa0928300:intron 20.0%
!!! TAATGTTACTTTTTCTTTCT+GGG + chr6_2:73458775-73458794 Msa0928300:intron 20.0%
!! ATATAATCAATAAAGCAGAA+AGG - chr6_2:73458919-73458938 None:intergenic 20.0%
!! TTAATCAAAGATGAATATGA+TGG - chr6_2:73458949-73458968 None:intergenic 20.0%
!!! AATTGTTTTATCTATTTTGG+TGG + chr6_2:73458967-73458986 Msa0928300:intron 20.0%
!!! ATTGTTTTATCTATTTTGGT+GGG + chr6_2:73458968-73458987 Msa0928300:intron 20.0%
!! GATTGATTGTAATTTGATAT+TGG + chr6_2:73459012-73459031 Msa0928300:five_prime_UTR 20.0%
!!! TGTGAAATTTGAAACTAATA+GGG + chr6_2:73459322-73459341 Msa0928300:five_prime_UTR 20.0%
!! AGTAATTTCAAGAAAATCAA+TGG - chr6_2:73459952-73459971 None:intergenic 20.0%
!! AAATTGGATATATGATTCAT+CGG + chr6_2:73460047-73460066 Msa0928300:CDS 20.0%
!! TATTTGCATAACTAATAGAA+TGG + chr6_2:73460327-73460346 Msa0928300:intron 20.0%
!! TATAATAACTCATAATGATC+GGG - chr6_2:73460862-73460881 None:intergenic 20.0%
!! ACTTTAAGAAGTAATCAATG+AGG - chr6_2:73458098-73458117 None:intergenic 25.0%
!! TTTTTATTACTTTCCCTTTC+TGG + chr6_2:73458413-73458432 Msa0928300:intron 25.0%
!! TTTTATTACTTTCCCTTTCT+GGG + chr6_2:73458414-73458433 Msa0928300:intron 25.0%
! AATCTTAAAAAACCCAGAAA+GGG - chr6_2:73458429-73458448 None:intergenic 25.0%
! AAATCTTAAAAAACCCAGAA+AGG - chr6_2:73458430-73458449 None:intergenic 25.0%
! ATATGAATCATTGATATGAC+AGG + chr6_2:73458694-73458713 Msa0928300:intron 25.0%
! TATGAATCATTGATATGACA+GGG + chr6_2:73458695-73458714 Msa0928300:intron 25.0%
!!! TCAATTTTATTTGTTCCTTG+TGG + chr6_2:73458802-73458821 Msa0928300:intron 25.0%
!!! CAATTTTATTTGTTCCTTGT+GGG + chr6_2:73458803-73458822 Msa0928300:intron 25.0%
!!! AATTTTATTTGTTCCTTGTG+GGG + chr6_2:73458804-73458823 Msa0928300:intron 25.0%
! GCTTATATTGTATAAAGTTG+TGG + chr6_2:73459244-73459263 Msa0928300:five_prime_UTR 25.0%
!! GTGTGAAATTTGAAACTAAT+AGG + chr6_2:73459321-73459340 Msa0928300:five_prime_UTR 25.0%
! AACTAATAGGGTTAAATGAA+AGG + chr6_2:73459334-73459353 Msa0928300:exon 25.0%
!! TATTCATAACTTTTGCTTCA+TGG + chr6_2:73459443-73459462 Msa0928300:CDS 25.0%
!!! TTTTTTCTATCATACCCTAT+TGG + chr6_2:73459466-73459485 Msa0928300:CDS 25.0%
! AACATTACCTTTCATAATTG+AGG - chr6_2:73459833-73459852 None:intergenic 25.0%
! GATACAAACACTAACAATTA+CGG - chr6_2:73459896-73459915 None:intergenic 25.0%
! TTGTAAGAAAGAATTTCACA+TGG + chr6_2:73459916-73459935 Msa0928300:intron 25.0%
!!! AGTTGTTTTTATTGTCAAGT+AGG + chr6_2:73460006-73460025 Msa0928300:intron 25.0%
! AATCATATATCCAATTTCCA+TGG - chr6_2:73460044-73460063 None:intergenic 25.0%
! AATTGGATATATGATTCATC+GGG + chr6_2:73460048-73460067 Msa0928300:CDS 25.0%
! TTAATTGCAAACGATATTTC+AGG + chr6_2:73460423-73460442 Msa0928300:intron 25.0%
!!! ATAGTTTCTAGTAGAGTTTA+TGG - chr6_2:73460897-73460916 None:intergenic 25.0%
!! TTACTTGTTTCTATCTGTCT+TGG + chr6_2:73458610-73458629 Msa0928300:intron 30.0%
CTTATGACACTTCTATTCAA+AGG - chr6_2:73458754-73458773 None:intergenic 30.0%
TATTGTATAAAGTTGTGGAG+TGG + chr6_2:73459249-73459268 Msa0928300:five_prime_UTR 30.0%
! GTTAAATGAAAGGCATGAAT+TGG + chr6_2:73459344-73459363 Msa0928300:exon 30.0%
GAAAATATAATCCGAGAAAG+TGG - chr6_2:73459406-73459425 None:intergenic 30.0%
! TCTCGGATTATATTTTCAGT+TGG + chr6_2:73459409-73459428 Msa0928300:CDS 30.0%
! TATATTTTCAGTTGGAGTAG+TGG + chr6_2:73459417-73459436 Msa0928300:CDS 30.0%
! ACTGTTCATGGTTATTTCAA+TGG + chr6_2:73459493-73459512 Msa0928300:CDS 30.0%
GAAGTTTGCATATCAATGTT+TGG - chr6_2:73459622-73459641 None:intergenic 30.0%
! TTAGTTACTGGAACGATTTT+CGG - chr6_2:73459742-73459761 None:intergenic 30.0%
TTCAAAAGAACCTATTCCAA+TGG + chr6_2:73459795-73459814 Msa0928300:CDS 30.0%
ACCAATTCCTCAATTATGAA+AGG + chr6_2:73459823-73459842 Msa0928300:CDS 30.0%
ACCTTTCATAATTGAGGAAT+TGG - chr6_2:73459827-73459846 None:intergenic 30.0%
!!! TGATTTGCTTTGTTCTCTTT+TGG + chr6_2:73459857-73459876 Msa0928300:intron 30.0%
ATTTCATGAACATCTCATCA+GGG - chr6_2:73460609-73460628 None:intergenic 30.0%
AATTTCATGAACATCTCATC+AGG - chr6_2:73460610-73460629 None:intergenic 30.0%
ATCTTGAACAATGAGATAGT+TGG + chr6_2:73460694-73460713 Msa0928300:CDS 30.0%
ATTGTAAGTCCGGTATAATT+CGG - chr6_2:73460823-73460842 None:intergenic 30.0%
GTCAGATAAGACCGTAATTA+CGG - chr6_2:73458178-73458197 None:intergenic 35.0%
GTATTTATAGTTGTACGCAG+AGG + chr6_2:73458257-73458276 Msa0928300:five_prime_UTR 35.0%
TTATCAAACACATAGACACC+AGG + chr6_2:73459063-73459082 Msa0928300:five_prime_UTR 35.0%
! AGAAAGTTTTCATGTGCTTC+AGG + chr6_2:73459288-73459307 Msa0928300:five_prime_UTR 35.0%
! GAAAGTTTTCATGTGCTTCA+GGG + chr6_2:73459289-73459308 Msa0928300:five_prime_UTR 35.0%
! AAATGAAAGGCATGAATTGG+AGG + chr6_2:73459347-73459366 Msa0928300:exon 35.0%
! AATGAAAGGCATGAATTGGA+GGG + chr6_2:73459348-73459367 Msa0928300:exon 35.0%
TTCGGATTTGAAGAACCTTT+GGG - chr6_2:73459382-73459401 None:intergenic 35.0%
TTTCGGATTTGAAGAACCTT+TGG - chr6_2:73459383-73459402 None:intergenic 35.0%
ATAATCCGAGAAAGTGGTTT+CGG - chr6_2:73459400-73459419 None:intergenic 35.0%
CATGAACAGTTGAACCAATA+GGG - chr6_2:73459483-73459502 None:intergenic 35.0%
ATTATCACTTAACACACCAC+TGG - chr6_2:73459653-73459672 None:intergenic 35.0%
GAAAATCGTTCCAGTAACTA+AGG + chr6_2:73459741-73459760 Msa0928300:CDS 35.0%
TGGCTTAGAAACTTCTGATT+CGG + chr6_2:73459771-73459790 Msa0928300:CDS 35.0%
! CAGGACTTGTTTGTGTATAA+CGG - chr6_2:73460075-73460094 None:intergenic 35.0%
CAGTTCTCATAATCCTTATC+AGG - chr6_2:73460141-73460160 None:intergenic 35.0%
CTGATAAGGATTATGAGAAC+TGG + chr6_2:73460139-73460158 Msa0928300:CDS 35.0%
! ATTTGATCCGAGGAAGTTTT+TGG + chr6_2:73460194-73460213 Msa0928300:CDS 35.0%
ATAAGCTCCAAAAACTTCCT+CGG - chr6_2:73460204-73460223 None:intergenic 35.0%
!!! AAGTTTTTGGAGCTTATGAG+AGG + chr6_2:73460207-73460226 Msa0928300:CDS 35.0%
AGTCCATGATGTGTATTCTT+TGG + chr6_2:73460277-73460296 Msa0928300:CDS 35.0%
TAGAATGGTTACATACGTGT+CGG + chr6_2:73460342-73460361 Msa0928300:intron 35.0%
CAACATCTGTAACGATTGTT+CGG + chr6_2:73460500-73460519 Msa0928300:CDS 35.0%
TTTCATGAACATCTCATCAG+GGG - chr6_2:73460608-73460627 None:intergenic 35.0%
ATTTCTCCCAACATTTGATG+TGG + chr6_2:73460627-73460646 Msa0928300:CDS 35.0%
GAACAACCACATCAAATGTT+GGG - chr6_2:73460636-73460655 None:intergenic 35.0%
AGAACAACCACATCAAATGT+TGG - chr6_2:73460637-73460656 None:intergenic 35.0%
TTGTTCTTTCATCTGGTCAT+TGG + chr6_2:73460650-73460669 Msa0928300:CDS 35.0%
TTGAACAATGAGATAGTTGG+AGG + chr6_2:73460697-73460716 Msa0928300:CDS 35.0%
ATAATTCGGATGCGTAACAA+GGG - chr6_2:73460809-73460828 None:intergenic 35.0%
TATAATTCGGATGCGTAACA+AGG - chr6_2:73460810-73460829 None:intergenic 35.0%
GGAACGTAAAATTGTAAGTC+CGG - chr6_2:73460833-73460852 None:intergenic 35.0%
AAGTGTAGTACACTGTCATG+AGG + chr6_2:73458142-73458161 Msa0928300:five_prime_UTR 40.0%
TAGTATTTACACCTGTGCTC+TGG + chr6_2:73458207-73458226 Msa0928300:five_prime_UTR 40.0%
! TGACAAGCTCTGACTAGAAA+TGG - chr6_2:73458309-73458328 None:intergenic 40.0%
!! CTTGTTTCTATCTGTCTTGG+TGG + chr6_2:73458613-73458632 Msa0928300:intron 40.0%
! GAACTGTCTTTGGTGATTGA+TGG + chr6_2:73458644-73458663 Msa0928300:intron 40.0%
TTCAAGATTCAAACCCCACA+AGG - chr6_2:73458473-73458492 None:intergenic 40.0%
!!! TCTATTTTGGTGGGTATTGC+AGG + chr6_2:73458977-73458996 Msa0928300:intron 40.0%
! GGGTATTGCAGGTTTGTATA+TGG + chr6_2:73458988-73459007 Msa0928300:intron 40.0%
! TTGAAGTGTCAGTGCTAGAT+AGG + chr6_2:73459215-73459234 Msa0928300:five_prime_UTR 40.0%
CAAATCCGAAACCACTTTCT+CGG + chr6_2:73459392-73459411 Msa0928300:CDS 40.0%
CCATGAACAGTTGAACCAAT+AGG - chr6_2:73459484-73459503 None:intergenic 40.0%
!! CCTATTGGTTCAACTGTTCA+TGG + chr6_2:73459481-73459500 Msa0928300:CDS 40.0%
GTAGAGAGTTCACAAACTTC+TGG + chr6_2:73459517-73459536 Msa0928300:CDS 40.0%
CAAACTTCCATAGTTTCCAG+TGG + chr6_2:73459634-73459653 Msa0928300:CDS 40.0%
TAACACACCACTGGAAACTA+TGG - chr6_2:73459644-73459663 None:intergenic 40.0%
TTGGTACTAGCCATTGGAAT+AGG - chr6_2:73459808-73459827 None:intergenic 40.0%
GTGATCTGTACCATGGAAAT+TGG + chr6_2:73460031-73460050 Msa0928300:CDS 40.0%
CGTGGGATATCACATTGAAA+AGG - chr6_2:73460174-73460193 None:intergenic 40.0%
CTGCCAAAGAATACACATCA+TGG - chr6_2:73460283-73460302 None:intergenic 40.0%
CATGATGTGTATTCTTTGGC+AGG + chr6_2:73460281-73460300 Msa0928300:CDS 40.0%
! GCAAACGATATTTCAGGTAG+AGG + chr6_2:73460429-73460448 Msa0928300:intron 40.0%
GTAGAGGAACCGAAAAATCA+GGG + chr6_2:73460445-73460464 Msa0928300:CDS 40.0%
! TTGCGAGTTCCCTGATTTTT+CGG - chr6_2:73460457-73460476 None:intergenic 40.0%
CTGTAACGATTGTTCGGATA+TGG + chr6_2:73460506-73460525 Msa0928300:CDS 40.0%
GATGTGGTTGTTCTTTCATC+TGG + chr6_2:73460643-73460662 Msa0928300:CDS 40.0%
AGATAGTTGGAGGACAATTG+TGG + chr6_2:73460707-73460726 Msa0928300:CDS 40.0%
! ATCAACAGCATCGAAGCATT+TGG + chr6_2:73460757-73460776 Msa0928300:CDS 40.0%
GTTACGCATCCGAATTATAC+CGG + chr6_2:73460811-73460830 Msa0928300:CDS 40.0%
CTCATAATGATCGGGTGAAT+AGG - chr6_2:73460854-73460873 None:intergenic 40.0%
TGTAGTACACTGTCATGAGG+TGG + chr6_2:73458145-73458164 Msa0928300:five_prime_UTR 45.0%
GTGGAGCTTTGCCGTAATTA+CGG + chr6_2:73458164-73458183 Msa0928300:five_prime_UTR 45.0%
TATGTAACTGACCAGAGCAC+AGG - chr6_2:73458221-73458240 None:intergenic 45.0%
GTCAGAGCTTGTCAACATCT+AGG + chr6_2:73458315-73458334 Msa0928300:five_prime_UTR 45.0%
GGATGTAGCAGAACTGTCTT+TGG + chr6_2:73458634-73458653 Msa0928300:intron 45.0%
ACATAGACACCAGGTACGAT+AGG + chr6_2:73459072-73459091 Msa0928300:five_prime_UTR 45.0%
CATAGACACCAGGTACGATA+GGG + chr6_2:73459073-73459092 Msa0928300:five_prime_UTR 45.0%
! GCACTGACACTTCAAATCGA+AGG - chr6_2:73459210-73459229 None:intergenic 45.0%
GGTGAAGCAGATTCACTCAA+GGG - chr6_2:73459721-73459740 None:intergenic 45.0%
CCACTCACATCCTTAGTTAC+TGG - chr6_2:73459754-73459773 None:intergenic 45.0%
CCAGTAACTAAGGATGTGAG+TGG + chr6_2:73459751-73459770 Msa0928300:CDS 45.0%
GAGGAATTGGTACTAGCCAT+TGG - chr6_2:73459814-73459833 None:intergenic 45.0%
GTAGGTTGTGATCTGTACCA+TGG + chr6_2:73460024-73460043 Msa0928300:intron 45.0%
TCTGCGTCTGTGTCAATACA+GGG - chr6_2:73460098-73460117 None:intergenic 45.0%
TTCTGCGTCTGTGTCAATAC+AGG - chr6_2:73460099-73460118 None:intergenic 45.0%
ACACAGACGCAGAATTGTCA+GGG + chr6_2:73460105-73460124 Msa0928300:CDS 45.0%
ACGCAGAATTGTCAGGGTAA+TGG + chr6_2:73460111-73460130 Msa0928300:CDS 45.0%
CGCAGAATTGTCAGGGTAAT+GGG + chr6_2:73460112-73460131 Msa0928300:CDS 45.0%
!! AGAATTGTCAGGGTAATGGG+AGG + chr6_2:73460115-73460134 Msa0928300:CDS 45.0%
AGGATTATGAGAACTGGCGA+TGG + chr6_2:73460145-73460164 Msa0928300:CDS 45.0%
ATATCCCACGATTTGATCCG+AGG + chr6_2:73460184-73460203 Msa0928300:CDS 45.0%
ACTTCCTCGGATCAAATCGT+GGG - chr6_2:73460191-73460210 None:intergenic 45.0%
AACTTCCTCGGATCAAATCG+TGG - chr6_2:73460192-73460211 None:intergenic 45.0%
GCTTATGAGAGGCAAGACAT+TGG + chr6_2:73460218-73460237 Msa0928300:CDS 45.0%
!! GGCAAGACATTGGCTTTCAT+TGG + chr6_2:73460228-73460247 Msa0928300:CDS 45.0%
GGCTTTCATTGGAGATTCTG+TGG + chr6_2:73460239-73460258 Msa0928300:CDS 45.0%
TACACATCATGGACTCCATC+TGG - chr6_2:73460272-73460291 None:intergenic 45.0%
TCAGTGTCGTGTCTAGTATC+TGG + chr6_2:73460367-73460386 Msa0928300:intron 45.0%
TGTCTAGTATCTGGTGTTCG+TGG + chr6_2:73460376-73460395 Msa0928300:intron 45.0%
GGTAGAGGAACCGAAAAATC+AGG + chr6_2:73460444-73460463 Msa0928300:intron 45.0%
TTGTTCGGATATGGTCGTCA+TGG + chr6_2:73460515-73460534 Msa0928300:CDS 45.0%
! TAGATTTTCTCCACACCAGC+TGG - chr6_2:73460577-73460596 None:intergenic 45.0%
TAGTTGGAGGACAATTGTGG+TGG + chr6_2:73460710-73460729 Msa0928300:CDS 45.0%
GATATGACAGGGACGCAACA+TGG + chr6_2:73458706-73458725 Msa0928300:intron 50.0%
GAAGCAGATTCACTCAAGGG+TGG - chr6_2:73459718-73459737 None:intergenic 50.0%
CGGTGAAGCAGATTCACTCA+AGG - chr6_2:73459722-73459741 None:intergenic 50.0%
GACACAGACGCAGAATTGTC+AGG + chr6_2:73460104-73460123 Msa0928300:CDS 50.0%
TTCTGTGGCTCGAAACCAGA+TGG + chr6_2:73460254-73460273 Msa0928300:CDS 50.0%
GACACCAGGTACGATAGGGA+CGG + chr6_2:73459077-73459096 Msa0928300:five_prime_UTR 55.0%
TGGAGGGTTGCATCTCCCAA+AGG + chr6_2:73459364-73459383 Msa0928300:CDS 55.0%
CGTCTGTGTCAATACAGGGC+AGG - chr6_2:73460094-73460113 None:intergenic 55.0%
!! GGGTAATGGGAGGCCTGATA+AGG + chr6_2:73460125-73460144 Msa0928300:CDS 55.0%
AGGGAACTCGCAACATGCAG+CGG + chr6_2:73460464-73460483 Msa0928300:CDS 55.0%
CCAGCTGGAGCAAAGTCGAA+TGG - chr6_2:73460562-73460581 None:intergenic 55.0%
CCATTCGACTTTGCTCCAGC+TGG + chr6_2:73460559-73460578 Msa0928300:CDS 55.0%
TGGAGGACAATTGTGGTGGC+CGG + chr6_2:73460714-73460733 Msa0928300:CDS 55.0%
TTCGCATGCCGAGACTTGTC+CGG - chr6_2:73460736-73460755 None:intergenic 55.0%
ACCAGGTACGATAGGGACGG+TGG + chr6_2:73459080-73459099 Msa0928300:five_prime_UTR 60.0%
TCCACCGTCCCTATCGTACC+TGG - chr6_2:73459084-73459103 None:intergenic 60.0%
CGACTTTGCTCCAGCTGGTG+TGG + chr6_2:73460564-73460583 Msa0928300:CDS 60.0%
TGTGGTGGCCGGACAAGTCT+CGG + chr6_2:73460725-73460744 Msa0928300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 73458090 73460989 73458090 ID=Msa0928300;Name=Msa0928300
chr6_2 mRNA 73458090 73460989 73458090 ID=Msa0928300-mRNA-1;Parent=Msa0928300;Name=Msa0928300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=597|1|1|1|0.66|0.5|4|80|411
chr6_2 exon 73458090 73458336 73458090 ID=Msa0928300-mRNA-1:exon:12511;Parent=Msa0928300-mRNA-1
chr6_2 exon 73458999 73459844 73458999 ID=Msa0928300-mRNA-1:exon:12512;Parent=Msa0928300-mRNA-1
chr6_2 exon 73460028 73460302 73460028 ID=Msa0928300-mRNA-1:exon:12513;Parent=Msa0928300-mRNA-1
chr6_2 exon 73460445 73460989 73460445 ID=Msa0928300-mRNA-1:exon:12514;Parent=Msa0928300-mRNA-1
chr6_2 five_prime_UTR 73458090 73458336 73458090 ID=Msa0928300-mRNA-1:five_prime_utr;Parent=Msa0928300-mRNA-1
chr6_2 five_prime_UTR 73458999 73459348 73458999 ID=Msa0928300-mRNA-1:five_prime_utr;Parent=Msa0928300-mRNA-1
chr6_2 CDS 73459349 73459844 73459349 ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2 CDS 73460028 73460302 73460028 ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2 CDS 73460445 73460909 73460445 ID=Msa0928300-mRNA-1:cds;Parent=Msa0928300-mRNA-1
chr6_2 three_prime_UTR 73460910 73460989 73460910 ID=Msa0928300-mRNA-1:three_prime_utr;Parent=Msa0928300-mRNA-1
Gene Sequence

>Msa0928300

ATGAAAGGCATGAATTGGAGGGTTGCATCTCCCAAAGGTTCTTCAAATCCGAAACCACTTTCTCGGATTATATTTTCAGTTGGAGTAGTGGCAGTATTCATAACTTTTGCTTCATGGTTTTTTCTATCATACCCTATTGGTTCAACTGTTCATGGTTATTTCAATGGTGTAGAGAGTTCACAAACTTCTGGTTTATCAGTCTCTCAGAAAATCAATACAACTTCTGTTGATCTTCACAAGAATTCAACTTTAGATTCAGTAGATAATAAACCAAACATTGATATGCAAACTTCCATAGTTTCCAGTGGTGTGTTAAGTGATAATAGTAGCAAGATAGAACAAATTGATACTAATTCAAATTCGCAACCACCCTTGAGTGAATCTGCTTCACCGAAAATCGTTCCAGTAACTAAGGATGTGAGTGGCTTAGAAACTTCTGATTCGGCTTCAAAAGAACCTATTCCAATGGCTAGTACCAATTCCTCAATTATGAAAGGTTGTGATCTGTACCATGGAAATTGGATATATGATTCATCGGGACCGTTATACACAAACAAGTCCTGCCCTGTATTGACACAGACGCAGAATTGTCAGGGTAATGGGAGGCCTGATAAGGATTATGAGAACTGGCGATGGAAGCCTTTTCAATGTGATATCCCACGATTTGATCCGAGGAAGTTTTTGGAGCTTATGAGAGGCAAGACATTGGCTTTCATTGGAGATTCTGTGGCTCGAAACCAGATGGAGTCCATGATGTGTATTCTTTGGCAGGTAGAGGAACCGAAAAATCAGGGAACTCGCAACATGCAGCGGTATTATTTTGAGTCAACATCTGTAACGATTGTTCGGATATGGTCGTCATGGCTTGTCAAACACAATTCAAAACCATTCGACTTTGCTCCAGCTGGTGTGGAGAAAATCTATCTCGAATCCCCTGATGAGATGTTCATGAAATTTCTCCCAACATTTGATGTGGTTGTTCTTTCATCTGGTCATTGGTTTACTAAACAATCAGTATACATCTTGAACAATGAGATAGTTGGAGGACAATTGTGGTGGCCGGACAAGTCTCGGCATGCGAAGATCAACAGCATCGAAGCATTTGGTATATCTGTTGAAACAATTCTCACTGCCCTTGTTACGCATCCGAATTATACCGGACTTACAATTTTACGTTCCTATTCACCCGATCATTATGAGTTATTATATAGAAATAATTTCCATAAACTCTACTAG
Protein sequence

>Msa0928300

MKGMNWRVASPKGSSNPKPLSRIIFSVGVVAVFITFASWFFLSYPIGSTVHGYFNGVESSQTSGLSVSQKINTTSVDLHKNSTLDSVDNKPNIDMQTSIVSSGVLSDNSSKIEQIDTNSNSQPPLSESASPKIVPVTKDVSGLETSDSASKEPIPMASTNSSIMKGCDLYHGNWIYDSSGPLYTNKSCPVLTQTQNCQGNGRPDKDYENWRWKPFQCDIPRFDPRKFLELMRGKTLAFIGDSVARNQMESMMCILWQVEEPKNQGTRNMQRYYFESTSVTIVRIWSSWLVKHNSKPFDFAPAGVEKIYLESPDEMFMKFLPTFDVVVLSSGHWFTKQSVYILNNEIVGGQLWWPDKSRHAKINSIEAFGISVETILTALVTHPNYTGLTILRSYSPDHYELLYRNNFHKLY*