AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835490 MtrunA17_Chr5g0401431 96.646 328 11 0 1 328 1 328 0.0 657
Msa0835490 MtrunA17_Chr4g0053871 71.037 328 90 1 1 328 1 323 5.01e-179 498
Msa0835490 MtrunA17_Chr4g0072091 67.442 301 95 2 26 326 23 320 6.12e-152 429
Msa0835490 MtrunA17_Chr1g0148021 61.006 318 120 3 12 328 13 327 9.50e-143 406
Msa0835490 MtrunA17_Chr7g0225221 58.621 319 125 3 8 326 6 317 1.65e-129 372
Msa0835490 MtrunA17_Chr8g0364291 44.099 322 176 3 6 325 1 320 3.19e-90 273
Msa0835490 MtrunA17_Chr6g0451571 42.679 321 178 4 10 328 17 333 2.34e-85 260
Msa0835490 MtrunA17_Chr3g0128061 42.633 319 179 3 11 328 10 325 1.77e-83 255
Msa0835490 MtrunA17_Chr1g0197411 41.640 317 178 4 14 325 12 326 1.14e-82 253
Msa0835490 MtrunA17_Chr4g0046131 42.810 306 169 4 26 327 41 344 1.22e-81 251
Msa0835490 MtrunA17_Chr1g0204011 41.641 329 177 8 2 328 6 321 3.14e-79 244
Msa0835490 MtrunA17_Chr2g0292211 41.141 333 187 5 1 328 12 340 1.85e-78 243
Msa0835490 MtrunA17_Chr5g0405991 41.846 325 174 7 7 328 3 315 3.80e-78 241
Msa0835490 MtrunA17_Chr2g0292241 41.141 333 187 5 1 328 1 329 2.32e-77 240
Msa0835490 MtrunA17_Chr2g0292261 40.841 333 188 5 1 328 1 329 4.06e-77 240
Msa0835490 MtrunA17_Chr2g0292271 41.139 316 180 4 16 328 17 329 4.23e-77 240
Msa0835490 MtrunA17_Chr1g0157051 40.557 323 178 7 8 328 7 317 1.17e-76 238
Msa0835490 MtrunA17_Chr8g0371381 42.857 308 163 5 23 328 22 318 2.09e-76 237
Msa0835490 MtrunA17_Chr1g0188431 39.521 334 182 7 1 328 7 326 5.63e-75 233
Msa0835490 MtrunA17_Chr2g0292181 39.157 332 195 4 1 328 10 338 4.30e-74 232
Msa0835490 MtrunA17_Chr2g0322861 40.694 317 181 5 14 328 74 385 5.81e-74 233
Msa0835490 MtrunA17_Chr2g0320061 38.906 329 188 5 1 328 1 317 1.83e-73 229
Msa0835490 MtrunA17_Chr4g0024121 40.752 319 184 2 11 328 11 325 3.58e-73 229
Msa0835490 MtrunA17_Chr2g0292151 39.339 333 193 6 1 328 1 329 3.95e-73 229
Msa0835490 MtrunA17_Chr2g0320091 40.248 323 175 7 12 328 7 317 4.30e-73 228
Msa0835490 MtrunA17_Chr2g0320051 39.210 329 187 5 1 328 1 317 4.69e-73 228
Msa0835490 MtrunA17_Chr7g0268501 40.979 327 183 7 3 328 2 319 2.10e-72 226
Msa0835490 MtrunA17_Chr7g0268521 40.979 327 183 7 3 328 2 319 2.10e-72 226
Msa0835490 MtrunA17_Chr2g0292251 41.100 309 175 4 23 328 24 328 6.23e-72 226
Msa0835490 MtrunA17_Chr2g0292111 38.438 333 196 6 1 328 1 329 9.18e-72 226
Msa0835490 MtrunA17_Chr2g0299691 37.846 325 190 6 10 328 39 357 1.47e-71 226
Msa0835490 MtrunA17_Chr2g0291751 39.640 333 192 6 1 328 1 329 1.68e-71 225
Msa0835490 MtrunA17_Chr4g0063671 40.673 327 177 7 7 326 1 317 2.80e-71 224
Msa0835490 MtrunA17_Chr2g0320071 38.245 319 186 4 11 328 8 316 3.25e-71 223
Msa0835490 MtrunA17_Chr4g0070951 39.009 323 188 4 10 328 11 328 3.45e-71 224
Msa0835490 MtrunA17_Chr2g0320101 38.438 320 184 4 12 328 7 316 1.75e-70 221
Msa0835490 MtrunA17_Chr1g0194151 39.645 338 188 8 1 328 1 332 2.01e-70 222
Msa0835490 MtrunA17_Chr7g0258811 39.319 323 184 6 7 325 53 367 2.54e-70 223
Msa0835490 MtrunA17_Chr3g0129051 38.485 330 186 7 1 325 1 318 1.09e-69 220
Msa0835490 MtrunA17_Chr8g0372601 38.978 313 183 4 21 328 20 329 3.83e-69 219
Msa0835490 MtrunA17_Chr2g0292091 38.438 333 191 8 1 328 1 324 3.91e-69 219
Msa0835490 MtrunA17_Chr4g0076211 39.799 299 168 6 31 328 45 332 4.17e-69 219
Msa0835490 MtrunA17_Chr1g0194271 39.420 345 186 8 1 328 1 339 8.84e-69 218
Msa0835490 MtrunA17_Chr7g0254201 39.934 303 172 5 25 327 18 310 1.77e-68 216
Msa0835490 MtrunA17_Chr7g0244461 37.195 328 189 5 1 328 1 311 2.08e-68 216
Msa0835490 MtrunA17_Chr2g0292101 37.764 331 197 5 1 328 1 325 2.43e-68 217
Msa0835490 MtrunA17_Chr7g0244451 38.344 326 189 4 4 328 1 315 4.41e-68 215
Msa0835490 MtrunA17_Chr4g0013821 37.255 306 186 4 23 328 24 323 6.46e-68 216
Msa0835490 MtrunA17_Chr2g0292291 39.820 334 189 8 2 328 3 331 6.99e-68 216
Msa0835490 MtrunA17_Chr5g0404721 39.867 301 175 4 30 328 33 329 1.38e-67 214
Msa0835490 MtrunA17_Chr1g0175561 37.421 318 192 5 11 325 9 322 1.84e-67 214
Msa0835490 MtrunA17_Chr1g0164891 40.461 304 168 8 32 328 94 391 3.45e-67 216
Msa0835490 MtrunA17_Chr4g0013201 38.636 308 177 5 22 328 41 337 7.28e-66 210
Msa0835490 MtrunA17_Chr4g0013171 36.335 322 186 6 13 325 6 317 9.62e-66 209
Msa0835490 MtrunA17_Chr4g0013721 38.047 297 178 4 32 328 105 395 1.29e-65 212
Msa0835490 MtrunA17_Chr6g0467121 39.091 330 180 8 6 328 47 362 1.99e-65 211
Msa0835490 MtrunA17_Chr2g0279041 35.168 327 199 6 5 326 4 322 2.94e-65 208
Msa0835490 MtrunA17_Chr5g0402581 34.783 322 203 5 9 328 9 325 7.31e-65 207
Msa0835490 MtrunA17_Chr5g0402571 35.276 326 197 7 6 328 11 325 1.49e-64 207
Msa0835490 MtrunA17_Chr2g0320031 36.923 325 192 6 7 328 4 318 1.74e-64 206
Msa0835490 MtrunA17_Chr5g0432441 37.846 325 182 8 7 325 12 322 3.23e-64 206
Msa0835490 MtrunA17_Chr6g0477071 37.117 326 185 6 8 328 31 341 4.08e-64 206
Msa0835490 MtrunA17_Chr7g0254231 40.404 297 162 6 32 327 27 309 8.30e-64 204
Msa0835490 MtrunA17_Chr5g0438021 37.037 324 188 6 5 325 11 321 1.27e-63 204
Msa0835490 MtrunA17_Chr3g0136751 35.976 328 199 5 1 326 1 319 2.95e-63 203
Msa0835490 MtrunA17_Chr3g0129061 38.066 331 186 7 1 325 1 318 3.01e-63 203
Msa0835490 MtrunA17_Chr3g0106921 37.846 325 178 8 6 325 11 316 3.92e-63 203
Msa0835490 MtrunA17_Chr4g0038171 37.695 321 187 5 12 328 9 320 6.55e-63 202
Msa0835490 MtrunA17_Chr6g0467161 35.562 329 195 6 6 328 18 335 1.69e-62 202
Msa0835490 MtrunA17_Chr2g0296621 37.294 303 177 7 27 328 50 340 1.71e-62 202
Msa0835490 MtrunA17_Chr3g0114451 36.760 321 193 3 8 328 7 317 2.95e-62 201
Msa0835490 MtrunA17_Chr4g0043391 37.304 319 187 5 14 328 14 323 5.10e-62 200
Msa0835490 MtrunA17_Chr4g0038161 35.385 325 196 5 8 328 5 319 5.30e-62 200
Msa0835490 MtrunA17_Chr4g0013181 36.700 297 178 4 30 325 62 349 1.78e-61 199
Msa0835490 MtrunA17_Chr2g0278671 37.742 310 178 7 23 326 20 320 2.80e-61 198
Msa0835490 MtrunA17_Chr4g0038151 35.474 327 196 6 6 328 5 320 9.20e-61 197
Msa0835490 MtrunA17_Chr3g0129041 38.066 331 186 7 1 325 1 318 1.41e-60 196
Msa0835490 MtrunA17_Chr4g0068621 35.922 309 188 7 23 328 34 335 4.07e-60 196
Msa0835490 MtrunA17_Chr4g0013191 38.176 296 169 6 36 328 55 339 1.17e-59 194
Msa0835490 MtrunA17_Chr6g0467251 36.810 326 188 6 7 325 10 324 2.08e-59 194
Msa0835490 MtrunA17_Chr5g0432351 37.082 329 188 8 2 325 3 317 2.46e-59 193
Msa0835490 MtrunA17_Chr6g0460711 36.957 322 191 6 4 325 1 310 1.27e-58 191
Msa0835490 MtrunA17_Chr5g0432341 36.170 329 191 8 2 325 3 317 1.60e-57 188
Msa0835490 MtrunA17_Chr5g0400331 35.737 319 192 5 18 328 17 330 4.40e-57 187
Msa0835490 MtrunA17_Chr5g0432331 36.170 329 191 8 2 325 34 348 6.78e-57 187
Msa0835490 MtrunA17_Chr3g0107881 36.585 328 188 8 6 328 11 323 2.63e-56 185
Msa0835490 MtrunA17_Chr1g0213061 37.037 324 184 9 13 328 9 320 3.79e-56 185
Msa0835490 MtrunA17_Chr1g0155611 35.880 301 188 3 27 325 46 343 9.59e-56 184
Msa0835490 MtrunA17_Chr7g0224371 33.846 325 202 7 6 328 8 321 3.68e-55 182
Msa0835490 MtrunA17_Chr2g0329641 33.657 309 184 5 26 325 35 331 7.23e-55 182
Msa0835490 MtrunA17_Chr4g0075241 32.219 329 210 6 4 325 1 323 1.03e-54 181
Msa0835490 MtrunA17_Chr2g0316791 31.737 334 192 6 25 326 74 403 1.79e-53 180
Msa0835490 MtrunA17_Chr2g0316481 32.335 334 190 6 25 326 74 403 4.91e-53 179
Msa0835490 MtrunA17_Chr3g0106901 35.093 322 194 5 5 325 12 319 1.29e-52 176
Msa0835490 MtrunA17_Chr2g0316191 30.746 335 195 6 25 326 74 404 9.62e-51 173
Msa0835490 MtrunA17_Chr2g0316831 31.437 334 193 7 25 326 110 439 1.13e-50 174
Msa0835490 MtrunA17_Chr5g0421411 35.714 280 160 9 60 328 14 284 1.39e-50 169
Msa0835490 MtrunA17_Chr2g0279061 36.154 260 154 5 71 326 12 263 1.39e-50 169
Msa0835490 MtrunA17_Chr1g0181511 35.179 307 187 5 25 328 25 322 9.52e-50 168
Msa0835490 MtrunA17_Chr4g0074851 33.882 304 189 5 27 327 32 326 2.35e-49 167
Msa0835490 MtrunA17_Chr1g0181481 35.505 307 186 5 25 328 25 322 2.85e-49 167
Msa0835490 MtrunA17_Chr2g0311251 31.953 338 189 8 25 328 9 339 1.33e-48 166
Msa0835490 MtrunA17_Chr1g0181431 35.048 311 182 6 25 328 25 322 1.40e-48 165
Msa0835490 MtrunA17_Chr2g0311241 29.351 385 194 7 17 328 50 429 3.20e-48 167
Msa0835490 MtrunA17_Chr5g0413051 33.010 309 193 7 25 325 71 373 1.74e-47 164
Msa0835490 MtrunA17_Chr2g0292281 40.385 208 112 3 123 328 18 215 4.03e-43 149
Msa0835490 MtrunA17_Chr4g0004591 30.124 322 162 4 27 328 77 355 2.80e-42 149
Msa0835490 MtrunA17_Chr5g0432401 30.864 324 169 7 7 325 9 282 2.94e-40 142
Msa0835490 MtrunA17_Chr2g0316811 33.913 230 131 5 25 237 48 273 2.63e-36 133
Msa0835490 MtrunA17_Chr3g0114461 38.265 196 112 4 131 325 1 188 1.45e-34 125
Msa0835490 MtrunA17_Chr2g0316141 28.571 287 150 7 73 326 11 275 4.02e-27 107
Msa0835490 MtrunA17_Chr2g0316181 28.571 287 150 7 73 326 11 275 4.02e-27 107
Msa0835490 MtrunA17_Chr7g0254181 45.283 106 48 4 102 202 33 133 2.40e-19 83.6
Msa0835490 MtrunA17_Chr1g0181501 32.812 192 118 4 141 328 4 188 3.67e-19 84.0
Msa0835490 MtrunA17_Chr5g0432321 36.496 137 73 3 144 274 4 132 4.38e-19 82.0
Msa0835490 MtrunA17_Chr3g0114491 40.179 112 64 2 26 137 17 125 6.37e-17 76.3
Msa0835490 MtrunA17_Chr3g0137751 32.584 178 92 7 47 212 92 253 4.49e-16 77.8
Msa0835490 MtrunA17_Chr1g0181491 37.391 115 67 3 25 139 10 119 2.43e-15 72.4
Msa0835490 MtrunA17_Chr4g0013811 41.096 73 43 0 141 213 6 78 1.66e-14 67.8
Msa0835490 MtrunA17_Chr3g0104101 30.282 142 90 6 194 328 9 148 6.53e-14 68.2
Msa0835490 MtrunA17_Chr7g0268491 39.583 96 56 2 233 328 3 96 3.10e-13 65.1
Msa0835490 MtrunA17_Chr1g0196191 50.000 70 31 2 69 138 27 92 9.82e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835490 AT3G49960.1 62.769 325 121 0 1 325 1 325 2.85e-153 433
Msa0835490 AT4G37530.1 66.337 303 102 0 23 325 23 325 3.25e-153 433
Msa0835490 AT5G67400.1 62.154 325 123 0 1 325 1 325 7.60e-152 429
Msa0835490 AT4G37520.1 64.784 301 106 0 25 325 25 325 4.75e-150 425
Msa0835490 AT4G30170.1 63.158 304 108 1 25 328 25 324 7.61e-148 419
Msa0835490 AT4G37520.2 64.452 301 104 1 25 325 25 322 6.50e-147 417
Msa0835490 AT2G18980.1 61.635 318 118 1 11 328 9 322 2.04e-146 416
Msa0835490 AT4G37530.2 68.462 260 82 0 23 282 23 282 2.18e-135 386
Msa0835490 AT5G14130.1 55.000 320 140 3 7 326 12 327 1.51e-119 347
Msa0835490 AT5G14130.2 55.000 320 140 3 7 326 53 368 4.47e-119 348
Msa0835490 AT4G17690.1 45.307 309 160 4 18 325 18 318 2.12e-94 283
Msa0835490 AT5G47000.1 46.026 302 156 3 25 325 31 326 1.22e-89 271
Msa0835490 AT2G34060.1 43.506 308 168 4 24 327 39 344 2.38e-86 263
Msa0835490 AT5G40150.1 46.078 306 157 4 24 328 29 327 3.65e-86 263
Msa0835490 AT3G28200.1 41.883 308 166 4 24 328 18 315 4.91e-82 251
Msa0835490 AT5G51890.1 40.867 323 181 7 8 328 7 321 1.75e-78 243
Msa0835490 AT5G42180.1 42.284 324 174 8 4 325 1 313 2.08e-78 242
Msa0835490 AT1G05260.1 41.463 328 183 6 4 327 1 323 2.71e-78 242
Msa0835490 AT3G21770.1 42.532 308 168 6 23 327 25 326 8.87e-78 241
Msa0835490 AT1G24110.1 41.139 316 182 3 11 325 6 318 8.92e-78 241
Msa0835490 AT5G06730.1 39.077 325 186 4 6 328 19 333 1.69e-74 234
Msa0835490 AT1G71695.1 39.640 333 180 6 6 326 13 336 1.10e-73 231
Msa0835490 AT3G01190.1 39.571 326 187 7 1 325 1 317 3.99e-72 226
Msa0835490 AT3G49120.1 39.264 326 188 5 10 328 12 334 5.05e-72 227
Msa0835490 AT3G49110.1 39.877 326 186 5 10 328 13 335 2.23e-71 225
Msa0835490 AT4G11290.1 38.671 331 194 6 1 328 1 325 2.69e-71 224
Msa0835490 AT3G32980.1 39.264 326 188 5 10 328 11 333 3.73e-71 225
Msa0835490 AT3G03670.1 37.421 318 188 5 11 325 8 317 2.06e-70 222
Msa0835490 AT5G19880.1 37.888 322 192 5 9 325 7 325 1.63e-69 220
Msa0835490 AT5G15180.1 36.826 334 199 7 1 328 1 328 2.45e-69 219
Msa0835490 AT2G38380.1 37.695 321 194 4 11 328 15 332 4.76e-69 219
Msa0835490 AT5G06720.1 39.542 306 178 5 23 325 28 329 4.95e-69 219
Msa0835490 AT4G08780.1 40.968 310 176 4 23 328 20 326 7.09e-69 219
Msa0835490 AT2G18140.1 39.597 298 176 3 32 328 40 334 7.25e-69 218
Msa0835490 AT4G36430.1 38.245 319 193 3 11 328 14 329 7.81e-69 218
Msa0835490 AT4G08770.1 40.645 310 177 4 23 328 20 326 7.82e-69 219
Msa0835490 AT4G31760.1 39.506 324 180 6 11 328 12 325 1.06e-68 218
Msa0835490 AT2G38390.1 37.383 321 195 4 11 328 15 332 2.55e-68 218
Msa0835490 AT5G17820.1 38.006 321 179 6 5 325 9 309 4.12e-68 216
Msa0835490 AT2G18150.1 37.462 331 196 5 6 328 8 335 1.20e-67 215
Msa0835490 AT5G17820.2 38.978 313 178 5 13 325 63 362 1.80e-67 216
Msa0835490 AT2G22420.1 37.231 325 197 5 4 328 1 318 2.94e-67 214
Msa0835490 AT4G33420.1 38.226 327 184 7 6 328 12 324 4.64e-67 213
Msa0835490 AT1G05240.1 39.604 303 174 5 27 326 26 322 6.69e-67 213
Msa0835490 AT1G05250.1 39.604 303 174 5 27 326 26 322 6.69e-67 213
Msa0835490 AT4G33420.2 38.226 327 184 7 6 328 59 371 2.32e-66 213
Msa0835490 AT5G64120.1 38.384 297 174 5 32 328 40 327 6.43e-66 211
Msa0835490 AT1G14540.1 36.533 323 190 5 7 328 6 314 7.49e-66 210
Msa0835490 AT4G16270.1 39.333 300 172 8 32 328 55 347 3.47e-65 209
Msa0835490 AT5G19890.1 37.963 324 188 6 9 328 12 326 3.49e-65 209
Msa0835490 AT2G41480.1 37.231 325 191 5 9 328 11 327 4.33e-64 206
Msa0835490 AT5G05340.1 38.361 305 174 5 24 325 27 320 8.03e-64 205
Msa0835490 AT5G66390.1 39.189 296 174 4 32 325 38 329 8.42e-64 205
Msa0835490 AT2G39040.1 38.782 312 179 7 24 328 43 349 1.40e-63 205
Msa0835490 AT3G50990.1 35.474 327 206 4 1 325 14 337 2.19e-63 204
Msa0835490 AT2G24800.1 37.097 310 179 6 25 328 29 328 1.67e-62 202
Msa0835490 AT5G58400.1 38.080 323 181 8 8 325 13 321 2.17e-62 201
Msa0835490 AT5G64110.1 36.223 323 191 6 12 328 16 329 4.05e-62 201
Msa0835490 AT1G77100.1 37.195 328 187 8 6 326 1 316 5.55e-62 200
Msa0835490 AT1G49570.1 33.724 341 202 7 4 325 11 346 8.44e-62 201
Msa0835490 AT5G39580.1 36.923 325 192 9 8 328 3 318 1.08e-61 199
Msa0835490 AT1G34510.1 36.842 323 185 7 4 325 1 305 1.21e-61 199
Msa0835490 AT1G14550.1 36.061 330 199 6 1 328 1 320 1.27e-61 199
Msa0835490 AT4G26010.1 35.514 321 189 7 8 327 4 307 3.45e-60 195
Msa0835490 AT1G30870.1 38.312 308 176 7 22 326 46 342 3.54e-60 196
Msa0835490 AT4G26010.2 35.714 322 187 8 8 327 32 335 4.44e-60 196
Msa0835490 AT4G33870.1 32.544 338 189 5 24 326 65 398 1.13e-59 197
Msa0835490 AT1G44970.1 36.482 307 190 3 24 328 42 345 4.23e-59 194
Msa0835490 AT2G43480.1 33.762 311 190 6 22 325 30 331 1.09e-57 189
Msa0835490 AT5G58390.1 38.154 325 183 8 6 325 1 312 1.94e-57 188
Msa0835490 AT5G22410.1 34.259 324 196 9 7 325 10 321 1.74e-56 186
Msa0835490 AT5G24070.1 34.628 309 186 6 26 327 34 333 1.13e-55 184
Msa0835490 AT5G64100.1 35.333 300 180 6 32 328 42 330 1.82e-55 184
Msa0835490 AT4G25980.1 34.091 308 189 5 25 326 24 323 6.05e-55 182
Msa0835490 AT2G35380.1 34.441 331 202 7 9 328 8 334 5.18e-53 177
Msa0835490 AT1G68850.1 31.361 338 214 10 4 328 2 334 1.03e-51 174
Msa0835490 AT4G21960.1 32.776 299 189 5 32 327 36 325 2.15e-48 165
Msa0835490 AT2G37130.1 33.657 309 192 6 24 328 27 326 1.84e-47 163
Msa0835490 AT2G37130.2 33.993 303 187 6 30 328 2 295 5.04e-47 160
Msa0835490 AT3G17070.1 32.680 306 191 6 27 325 38 335 1.13e-45 158
Msa0835490 AT2G35380.2 35.897 234 140 5 102 328 16 246 1.51e-37 134
Msa0835490 AT2G24800.2 38.012 171 99 3 25 195 29 192 3.10e-31 118
Msa0835490 AT3G17070.2 30.303 264 168 7 69 325 18 272 1.58e-30 117
Msa0835490 AT4G25980.2 38.202 178 101 4 25 201 69 238 4.02e-28 110
Msa0835490 AT5G39580.2 40.719 167 91 5 32 198 30 188 4.32e-28 109
Msa0835490 AT4G32320.1 28.674 279 152 12 7 267 74 323 1.09e-17 82.8

Find 88 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGTGGTGTCTACTTAAT+TGG 0.165416 5_4:+8861928 None:intergenic
TCAAAGGCATGTGGAGTAAT+TGG 0.184890 5_4:+8859859 None:intergenic
TGGATGACAAATTATATTAT+TGG 0.189268 5_4:-8859588 Msa0835490:three_prime_UTR
CCAATAGAGTGTACAATTTC+AGG 0.211635 5_4:-8859984 Msa0835490:CDS
ACAGAAATGATTGCACTTTC+AGG 0.236725 5_4:-8860935 Msa0835490:intron
TCTAAAGATTCTGATGTAAA+TGG 0.264360 5_4:-8861028 Msa0835490:CDS
CCAGCCAATGAAAGATTATC+AGG 0.272485 5_4:+8861625 None:intergenic
TGTTGCTGCCATGACCAAAT+TGG 0.277940 5_4:-8859704 Msa0835490:CDS
CTTCCATGACTGCTTTGTTC+AGG 0.296230 5_4:-8861808 Msa0835490:intron
AGCTTAATCTTATACTTGTT+TGG 0.314208 5_4:-8861995 Msa0835490:CDS
GACACCAACTCGACCCAATT+TGG 0.314627 5_4:+8859690 None:intergenic
ACCATACTATGAGGTAGAAT+TGG 0.315906 5_4:-8861071 Msa0835490:CDS
TCCAAGGGTTGCAGTTGATA+TGG 0.330440 5_4:-8859884 Msa0835490:CDS
CAGCACAAGAAACTTTATTC+TGG 0.336699 5_4:+8861545 None:intergenic
AACAGCATCCACAGCTGCTT+TGG 0.345598 5_4:+8861576 None:intergenic
CCTGAAATTGTACACTCTAT+TGG 0.370936 5_4:+8859984 None:intergenic
TGTACTTACGGAATATAATA+AGG 0.380746 5_4:+8859516 None:intergenic
CCCAATTCTACCTCATAGTA+TGG 0.385461 5_4:+8861070 None:intergenic
AAAAGCATTTACTGCAGCTT+TGG 0.387024 5_4:+8859759 None:intergenic
GTAGAATTGGGAAGATTTGA+TGG 0.400406 5_4:-8861058 Msa0835490:CDS
ATATGGAATGTGAAATTGTC+GGG 0.416625 5_4:+8862148 None:intergenic
TCACCCTGATAATCTTTCAT+TGG 0.428396 5_4:-8861629 Msa0835490:CDS
CCTGATAATCTTTCATTGGC+TGG 0.430855 5_4:-8861625 Msa0835490:CDS
GTAGTGGTGTCTACTTAATT+GGG 0.434010 5_4:+8861929 None:intergenic
GTTGCTGCCATGACCAAATT+GGG 0.437082 5_4:-8859703 Msa0835490:CDS
CAAAGGCATGTGGAGTAATT+GGG 0.442444 5_4:+8859860 None:intergenic
TGAAAAGATTCTAATCCAAC+TGG 0.445880 5_4:-8862179 Msa0835490:five_prime_UTR
TTGCAGAGGTAAAGTAAAGT+AGG 0.448695 5_4:+8862037 None:intergenic
ACCCTTGGATCCACATCCCT+TGG 0.454377 5_4:+8859898 None:intergenic
AATCTTTCATTGGCTGGAGA+TGG 0.460504 5_4:-8861619 Msa0835490:CDS
ATCAATGTGCCCAAGGGATG+TGG 0.460713 5_4:-8859908 Msa0835490:CDS
TTGTGCTGATATTCTAGCTA+TGG 0.463503 5_4:-8861530 Msa0835490:CDS
GTTTAAACAATGTATTAAGC+TGG 0.467335 5_4:+8860975 None:intergenic
CCATACTATGAGGTAGAATT+GGG 0.468056 5_4:-8861070 Msa0835490:CDS
TTGAATCCGTGAAGAGGACT+TGG 0.468682 5_4:+8859785 None:intergenic
TCCATATCAACTGCAACCCT+TGG 0.475393 5_4:+8859883 None:intergenic
CTATTTCAAGAATCTACAAA+AGG 0.475878 5_4:-8859830 Msa0835490:CDS
AGCTGGTTCAAGTTGAATCC+TGG 0.480998 5_4:+8860992 None:intergenic
GCGTAGTGTAAGTCTAATGT+AGG 0.483647 5_4:+8859943 None:intergenic
CTCAGACCAAGTCCTCTTCA+CGG 0.486562 5_4:-8859791 Msa0835490:CDS
ATACATTGTTTAAACATCAC+GGG 0.490569 5_4:-8860967 Msa0835490:CDS
CAAGAATCTACAAAAGGGAA+AGG 0.501575 5_4:-8859824 Msa0835490:CDS
AAGAAGAGACGTAGAGTGGC+AGG 0.502656 5_4:+8861828 None:intergenic
CCCTTGGATCCACATCCCTT+GGG 0.505679 5_4:+8859899 None:intergenic
AAGAATCTACAAAAGGGAAA+GGG 0.508178 5_4:-8859823 Msa0835490:CDS
AATACATTGTTTAAACATCA+CGG 0.513218 5_4:-8860968 Msa0835490:CDS
GTGTCAAGAATTCACACAAT+GGG 0.518226 5_4:-8859672 Msa0835490:CDS
AACCCGTGATGTTATTGCAT+TGG 0.520448 5_4:-8861506 Msa0835490:intron
TTCAAGTTGAATCCTGGCTC+AGG 0.520683 5_4:+8860998 None:intergenic
TTACCTGAACAAAGCAGTCA+TGG 0.532969 5_4:+8861805 None:intergenic
AATGGAAAACTTCCTGAGCC+AGG 0.533024 5_4:-8861010 Msa0835490:CDS
TCCCTCTCTGCTCTATTATG+TGG 0.534283 5_4:+8861652 None:intergenic
TCTGTAGGTGCTCACACCGT+TGG 0.536753 5_4:-8860030 Msa0835490:intron
GAAACTTTATTCTGGCAAAG+AGG 0.538555 5_4:+8861553 None:intergenic
GGTCATGGCAGCAACAAAGT+TGG 0.538768 5_4:+8859711 None:intergenic
CCAATTACACAGGGGTGTGA+TGG 0.539283 5_4:-8861697 Msa0835490:intron
AATTAAAATCAATGTGCCCA+AGG 0.543156 5_4:-8859915 Msa0835490:CDS
TATATGGAATGTGAAATTGT+CGG 0.543572 5_4:+8862147 None:intergenic
TAGAATTGGGAAGATTTGAT+GGG 0.544238 5_4:-8861057 Msa0835490:CDS
TATTTCAAGAATCTACAAAA+GGG 0.560775 5_4:-8859829 Msa0835490:CDS
AACCAATGCAATAACATCAC+GGG 0.563893 5_4:+8861504 None:intergenic
CTTGAAATAGACATTATCAA+AGG 0.566475 5_4:+8859843 None:intergenic
GCCCAAGGGATGTGGATCCA+AGG 0.566912 5_4:-8859900 Msa0835490:CDS
CATATCAAGTTAGAATGTTG+TGG 0.566972 5_4:-8859617 Msa0835490:three_prime_UTR
TGGATCTTGAATCCGTGAAG+AGG 0.581662 5_4:+8859779 None:intergenic
TTAGAATGTTGTGGTCCTTG+TGG 0.594211 5_4:-8859608 Msa0835490:three_prime_UTR
GCCACATAATAGAGCAGAGA+GGG 0.597026 5_4:-8861653 Msa0835490:CDS
CTACTTAATTGGGCATGAGT+AGG 0.598762 5_4:+8861939 None:intergenic
CCCAAGGGATGTGGATCCAA+GGG 0.601578 5_4:-8859899 Msa0835490:CDS
ATTAAAATCAATGTGCCCAA+GGG 0.604041 5_4:-8859914 Msa0835490:CDS
CGTGAAGAGGACTTGGTCTG+AGG 0.605078 5_4:+8859792 None:intergenic
TGTCGGGGTCACGAGCCAGT+TGG 0.605082 5_4:+8862164 None:intergenic
AAACCAATGCAATAACATCA+CGG 0.605408 5_4:+8861503 None:intergenic
TATACAAGCCAAAGCAGCTG+TGG 0.607386 5_4:-8861584 Msa0835490:CDS
AACTCGACCCAATTTGGTCA+TGG 0.625747 5_4:+8859696 None:intergenic
ATGACCAAATTGGGTCGAGT+TGG 0.628391 5_4:-8859694 Msa0835490:CDS
GGCAGGAGGACCATACTATG+AGG 0.631628 5_4:-8861080 Msa0835490:CDS
CGTAGTGTAAGTCTAATGTA+GGG 0.631745 5_4:+8859944 None:intergenic
CAGCCAATGAAAGATTATCA+GGG 0.640554 5_4:+8861626 None:intergenic
ATGGAAGAAGAGACGTAGAG+TGG 0.643216 5_4:+8861824 None:intergenic
TAGGACAAGAATTCTTGTAG+TGG 0.645111 5_4:+8861913 None:intergenic
TAGACATTATCAAAGGCATG+TGG 0.651893 5_4:+8859850 None:intergenic
GGTGTCAAGAATTCACACAA+TGG 0.671153 5_4:-8859673 Msa0835490:CDS
ACACAATGGGAACATTCGTG+CGG 0.672293 5_4:-8859659 Msa0835490:CDS
TATGGAATGTGAAATTGTCG+GGG 0.683790 5_4:+8862149 None:intergenic
GTTGCAATGTGAGAATCCAA+CGG 0.699363 5_4:+8860014 None:intergenic
AATATAATTTGTCATCCACA+AGG 0.705562 5_4:+8859593 None:intergenic
CGCCACATAATAGAGCAGAG+AGG 0.791379 5_4:-8861654 Msa0835490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAGATAAAACTT+TGG - chr5_4:8861560-8861579 Msa0835490:CDS 10.0%
!! AAGTTTAAAAATTAGATTGA+TGG - chr5_4:8860386-8860405 Msa0835490:intron 15.0%
!! TAGAAAAATAAAGATATTGA+AGG - chr5_4:8861248-8861267 Msa0835490:intron 15.0%
!! AGAAAAATAAAGATATTGAA+GGG - chr5_4:8861249-8861268 Msa0835490:intron 15.0%
!!! AGTCAAATTTTACTAGTATA+TGG + chr5_4:8859516-8859535 None:intergenic 20.0%
!!! TCAATTACATGCATTTTATT+TGG - chr5_4:8859868-8859887 Msa0835490:CDS 20.0%
!! GAAAAGGTAACATTTATTTA+TGG + chr5_4:8859898-8859917 None:intergenic 20.0%
!! TGCACAATATAAATTAGAAA+AGG + chr5_4:8859914-8859933 None:intergenic 20.0%
!! TAGGATAATTAAAATAGTCA+CGG + chr5_4:8860290-8860309 None:intergenic 20.0%
!! TCTAATTATTAGAATAGACT+TGG - chr5_4:8860420-8860439 Msa0835490:intron 20.0%
!!! AATGTGAAATTTGAATTTTC+AGG - chr5_4:8860543-8860562 Msa0835490:intron 20.0%
!! AATACATTGTTTAAACATCA+CGG - chr5_4:8860676-8860695 Msa0835490:intron 20.0%
!! TTCACAATATATCAAAGTTA+AGG + chr5_4:8860872-8860891 None:intergenic 20.0%
!!! TAAAGTTACTTTGTAGTATA+TGG + chr5_4:8861179-8861198 None:intergenic 20.0%
!! AGTAATCATTCTTAAAAAGT+TGG - chr5_4:8861329-8861348 Msa0835490:intron 20.0%
!! TCAAAAAAGTTGTCATTAAA+TGG + chr5_4:8861398-8861417 None:intergenic 20.0%
!! AATAAAAAGTGAAAAAACCA+AGG + chr5_4:8861424-8861443 None:intergenic 20.0%
!!! TTGGTTTTTTCACTTTTTAT+TGG - chr5_4:8861423-8861442 Msa0835490:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - chr5_4:8861436-8861455 Msa0835490:intron 20.0%
!! TATTTCAAGAATCTACAAAA+GGG - chr5_4:8861815-8861834 Msa0835490:CDS 20.0%
!! TGGATGACAAATTATATTAT+TGG - chr5_4:8862056-8862075 Msa0835490:five_prime_UTR 20.0%
! TATATGGAATGTGAAATTGT+CGG + chr5_4:8859500-8859519 None:intergenic 25.0%
!!! ATTTGATGTTTTTTTTGCAG+AGG + chr5_4:8859624-8859643 None:intergenic 25.0%
! TCTGCAAAAAAAACATCAAA+TGG - chr5_4:8859623-8859642 Msa0835490:exon 25.0%
! AGCTTAATCTTATACTTGTT+TGG - chr5_4:8859649-8859668 Msa0835490:CDS 25.0%
! TTATGATATTCCAATTACAC+AGG - chr5_4:8859937-8859956 Msa0835490:CDS 25.0%
! TATGATATTCCAATTACACA+GGG - chr5_4:8859938-8859957 Msa0835490:CDS 25.0%
!!! CAAAGAAAGTTGATATCTTT+AGG + chr5_4:8860309-8860328 None:intergenic 25.0%
! TTACTCGTTATAATAGTGTT+TGG + chr5_4:8860469-8860488 None:intergenic 25.0%
!! ATTCAGTCTTATAACTAACT+AGG - chr5_4:8860506-8860525 Msa0835490:intron 25.0%
! TCTAAAGATTCTGATGTAAA+TGG - chr5_4:8860616-8860635 Msa0835490:intron 25.0%
! GTTTAAACAATGTATTAAGC+TGG + chr5_4:8860672-8860691 None:intergenic 25.0%
! ATACATTGTTTAAACATCAC+GGG - chr5_4:8860677-8860696 Msa0835490:intron 25.0%
! ATCAAAGTTAAGGACAAATT+TGG + chr5_4:8860862-8860881 None:intergenic 25.0%
! CTTGAAATAGACATTATCAA+AGG + chr5_4:8861804-8861823 None:intergenic 25.0%
! CTATTTCAAGAATCTACAAA+AGG - chr5_4:8861814-8861833 Msa0835490:CDS 25.0%
!! AATATAATTTGTCATCCACA+AGG + chr5_4:8862054-8862073 None:intergenic 25.0%
! TGTACTTACGGAATATAATA+AGG + chr5_4:8862131-8862150 None:intergenic 25.0%
TGAAAAGATTCTAATCCAAC+TGG - chr5_4:8859465-8859484 Msa0835490:three_prime_UTR 30.0%
ATATGGAATGTGAAATTGTC+GGG + chr5_4:8859499-8859518 None:intergenic 30.0%
! CTGACAATGTTTTCAACATT+AGG + chr5_4:8859753-8859772 None:intergenic 30.0%
ATGATATTCCAATTACACAG+GGG - chr5_4:8859939-8859958 Msa0835490:CDS 30.0%
AAACCAATGCAATAACATCA+CGG + chr5_4:8860144-8860163 None:intergenic 30.0%
AGACTGAATTAACTTTCACA+GGG + chr5_4:8860495-8860514 None:intergenic 30.0%
AAGACTGAATTAACTTTCAC+AGG + chr5_4:8860496-8860515 None:intergenic 30.0%
!! TGAAATTTGAATTTTCAGGC+AGG - chr5_4:8860547-8860566 Msa0835490:intron 30.0%
TAGAATTGGGAAGATTTGAT+GGG - chr5_4:8860587-8860606 Msa0835490:intron 30.0%
ACGACTTGACATTGTTTATA+TGG - chr5_4:8860947-8860966 Msa0835490:CDS 30.0%
TTATTGGTCAAAAACAATGG+AGG - chr5_4:8861439-8861458 Msa0835490:intron 30.0%
TATTGGTCAAAAACAATGGA+GGG - chr5_4:8861440-8861459 Msa0835490:intron 30.0%
GTTCAAAAGTTGTCAAAAAG+TGG - chr5_4:8861516-8861535 Msa0835490:CDS 30.0%
AATTAAAATCAATGTGCCCA+AGG - chr5_4:8861729-8861748 Msa0835490:intron 30.0%
ATTAAAATCAATGTGCCCAA+GGG - chr5_4:8861730-8861749 Msa0835490:intron 30.0%
AAGAATCTACAAAAGGGAAA+GGG - chr5_4:8861821-8861840 Msa0835490:CDS 30.0%
CATATCAAGTTAGAATGTTG+TGG - chr5_4:8862027-8862046 Msa0835490:five_prime_UTR 30.0%
! CAGTCTTTTAGATGTACTTA+CGG + chr5_4:8862143-8862162 None:intergenic 30.0%
TATGGAATGTGAAATTGTCG+GGG + chr5_4:8859498-8859517 None:intergenic 35.0%
TTGCAGAGGTAAAGTAAAGT+AGG + chr5_4:8859610-8859629 None:intergenic 35.0%
GTAGTGGTGTCTACTTAATT+GGG + chr5_4:8859718-8859737 None:intergenic 35.0%
TGTAGTGGTGTCTACTTAAT+TGG + chr5_4:8859719-8859738 None:intergenic 35.0%
TAGGACAAGAATTCTTGTAG+TGG + chr5_4:8859734-8859753 None:intergenic 35.0%
TCACCCTGATAATCTTTCAT+TGG - chr5_4:8860015-8860034 Msa0835490:CDS 35.0%
CAGCCAATGAAAGATTATCA+GGG + chr5_4:8860021-8860040 None:intergenic 35.0%
GAAACTTTATTCTGGCAAAG+AGG + chr5_4:8860094-8860113 None:intergenic 35.0%
CAGCACAAGAAACTTTATTC+TGG + chr5_4:8860102-8860121 None:intergenic 35.0%
! TTGTGCTGATATTCTAGCTA+TGG - chr5_4:8860114-8860133 Msa0835490:intron 35.0%
AACCAATGCAATAACATCAC+GGG + chr5_4:8860143-8860162 None:intergenic 35.0%
!! AATTTGAATTTTCAGGCAGG+AGG - chr5_4:8860550-8860569 Msa0835490:intron 35.0%
ACCATACTATGAGGTAGAAT+TGG - chr5_4:8860573-8860592 Msa0835490:intron 35.0%
CCATACTATGAGGTAGAATT+GGG - chr5_4:8860574-8860593 Msa0835490:intron 35.0%
GTAGAATTGGGAAGATTTGA+TGG - chr5_4:8860586-8860605 Msa0835490:intron 35.0%
ACAGAAATGATTGCACTTTC+AGG - chr5_4:8860709-8860728 Msa0835490:intron 35.0%
TCAATATGTCTCATGCATGT+TGG + chr5_4:8860768-8860787 None:intergenic 35.0%
ACCCTCATTATACTGTTTGA+GGG - chr5_4:8860809-8860828 Msa0835490:intron 35.0%
ACCCTCAAACAGTATAATGA+GGG + chr5_4:8860813-8860832 None:intergenic 35.0%
TACCCTCAAACAGTATAATG+AGG + chr5_4:8860814-8860833 None:intergenic 35.0%
! TTATACTGTTTGAGGGTATG+AGG - chr5_4:8860816-8860835 Msa0835490:intron 35.0%
! TATACTGTTTGAGGGTATGA+GGG - chr5_4:8860817-8860836 Msa0835490:intron 35.0%
AAGCATCTGAGTTAGATCTT+AGG - chr5_4:8861202-8861221 Msa0835490:intron 35.0%
!! TTGAAGGGTAGTATTTCTAG+TGG - chr5_4:8861264-8861283 Msa0835490:intron 35.0%
!! GTAGTATTTCTAGTGGTTGT+CGG - chr5_4:8861271-8861290 Msa0835490:intron 35.0%
!!! GACAACTTTTTTGACAACCT+TGG - chr5_4:8861404-8861423 Msa0835490:intron 35.0%
GAATCATGTCAATCAACACT+AGG + chr5_4:8861588-8861607 None:intergenic 35.0%
CCTGAAATTGTACACTCTAT+TGG + chr5_4:8861663-8861682 None:intergenic 35.0%
CCAATAGAGTGTACAATTTC+AGG - chr5_4:8861660-8861679 Msa0835490:CDS 35.0%
CGTAGTGTAAGTCTAATGTA+GGG + chr5_4:8861703-8861722 None:intergenic 35.0%
! TAGACATTATCAAAGGCATG+TGG + chr5_4:8861797-8861816 None:intergenic 35.0%
CAAGAATCTACAAAAGGGAA+AGG - chr5_4:8861820-8861839 Msa0835490:CDS 35.0%
!! AAAAGCATTTACTGCAGCTT+TGG + chr5_4:8861888-8861907 None:intergenic 35.0%
GTGTCAAGAATTCACACAAT+GGG - chr5_4:8861972-8861991 Msa0835490:CDS 35.0%
CTACTTAATTGGGCATGAGT+AGG + chr5_4:8859708-8859727 None:intergenic 40.0%
TTACCTGAACAAAGCAGTCA+TGG + chr5_4:8859842-8859861 None:intergenic 40.0%
CCAGCCAATGAAAGATTATC+AGG + chr5_4:8860022-8860041 None:intergenic 40.0%
CCTGATAATCTTTCATTGGC+TGG - chr5_4:8860019-8860038 Msa0835490:CDS 40.0%
! AATCTTTCATTGGCTGGAGA+TGG - chr5_4:8860025-8860044 Msa0835490:CDS 40.0%
AACCCGTGATGTTATTGCAT+TGG - chr5_4:8860138-8860157 Msa0835490:intron 40.0%
! GGATCATCTAGAACAGCATT+AGG - chr5_4:8860441-8860460 Msa0835490:intron 40.0%
CCCAATTCTACCTCATAGTA+TGG + chr5_4:8860577-8860596 None:intergenic 40.0%
GACCCTCATTATACTGTTTG+AGG - chr5_4:8860808-8860827 Msa0835490:intron 40.0%
AGGGAGAAAAAAGAAGAGAG+AGG - chr5_4:8861459-8861478 Msa0835490:intron 40.0%
ACATGATTCATTCCCTCTGT+AGG - chr5_4:8861599-8861618 Msa0835490:CDS 40.0%
GTTGCAATGTGAGAATCCAA+CGG + chr5_4:8861633-8861652 None:intergenic 40.0%
GCGTAGTGTAAGTCTAATGT+AGG + chr5_4:8861704-8861723 None:intergenic 40.0%
! CAAAGGCATGTGGAGTAATT+GGG + chr5_4:8861787-8861806 None:intergenic 40.0%
! TCAAAGGCATGTGGAGTAAT+TGG + chr5_4:8861788-8861807 None:intergenic 40.0%
GGTGTCAAGAATTCACACAA+TGG - chr5_4:8861971-8861990 Msa0835490:CDS 40.0%
TTAGAATGTTGTGGTCCTTG+TGG - chr5_4:8862036-8862055 Msa0835490:five_prime_UTR 40.0%
ATGGAAGAAGAGACGTAGAG+TGG + chr5_4:8859823-8859842 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG - chr5_4:8859836-8859855 Msa0835490:CDS 45.0%
GCCACATAATAGAGCAGAGA+GGG - chr5_4:8859991-8860010 Msa0835490:CDS 45.0%
TCCCTCTCTGCTCTATTATG+TGG + chr5_4:8859995-8860014 None:intergenic 45.0%
TATACAAGCCAAAGCAGCTG+TGG - chr5_4:8860060-8860079 Msa0835490:intron 45.0%
AATGGAAAACTTCCTGAGCC+AGG - chr5_4:8860634-8860653 Msa0835490:intron 45.0%
!! TTCAAGTTGAATCCTGGCTC+AGG + chr5_4:8860649-8860668 None:intergenic 45.0%
!! AGCTGGTTCAAGTTGAATCC+TGG + chr5_4:8860655-8860674 None:intergenic 45.0%
AGTGTAAACCGTAAACCACG+CGG + chr5_4:8860742-8860761 None:intergenic 45.0%
TAATGAGGGTCGCATAGCAT+AGG + chr5_4:8860799-8860818 None:intergenic 45.0%
! GTTTGAGGGTATGAGGGTAT+TGG - chr5_4:8860823-8860842 Msa0835490:intron 45.0%
! TCCAAGGGTTGCAGTTGATA+TGG - chr5_4:8861760-8861779 Msa0835490:intron 45.0%
TCCATATCAACTGCAACCCT+TGG + chr5_4:8861764-8861783 None:intergenic 45.0%
TTGAATCCGTGAAGAGGACT+TGG + chr5_4:8861862-8861881 None:intergenic 45.0%
TGGATCTTGAATCCGTGAAG+AGG + chr5_4:8861868-8861887 None:intergenic 45.0%
TGTTGCTGCCATGACCAAAT+TGG - chr5_4:8861940-8861959 Msa0835490:CDS 45.0%
GTTGCTGCCATGACCAAATT+GGG - chr5_4:8861941-8861960 Msa0835490:CDS 45.0%
AACTCGACCCAATTTGGTCA+TGG + chr5_4:8861951-8861970 None:intergenic 45.0%
ATGACCAAATTGGGTCGAGT+TGG - chr5_4:8861950-8861969 Msa0835490:CDS 45.0%
ACACAATGGGAACATTCGTG+CGG - chr5_4:8861985-8862004 Msa0835490:CDS 45.0%
!!! ATTATTTTACATTTATAAAT+TGG + chr5_4:8861305-8861324 None:intergenic 5.0%
AAGAAGAGACGTAGAGTGGC+AGG + chr5_4:8859819-8859838 None:intergenic 50.0%
CCATCACACCCCTGTGTAAT+TGG + chr5_4:8859950-8859969 None:intergenic 50.0%
! CCAATTACACAGGGGTGTGA+TGG - chr5_4:8859947-8859966 Msa0835490:CDS 50.0%
CGCCACATAATAGAGCAGAG+AGG - chr5_4:8859990-8860009 Msa0835490:CDS 50.0%
AACAGCATCCACAGCTGCTT+TGG + chr5_4:8860071-8860090 None:intergenic 50.0%
GGTCGCATAGCATAGGAACA+TGG + chr5_4:8860792-8860811 None:intergenic 50.0%
ATCAATGTGCCCAAGGGATG+TGG - chr5_4:8861736-8861755 Msa0835490:intron 50.0%
CTCAGACCAAGTCCTCTTCA+CGG - chr5_4:8861853-8861872 Msa0835490:CDS 50.0%
GGTCATGGCAGCAACAAAGT+TGG + chr5_4:8861936-8861955 None:intergenic 50.0%
GACACCAACTCGACCCAATT+TGG + chr5_4:8861957-8861976 None:intergenic 50.0%
GGCAGGAGGACCATACTATG+AGG - chr5_4:8860564-8860583 Msa0835490:intron 55.0%
GTAATGCGCCGCGTGGTTTA+CGG - chr5_4:8860731-8860750 Msa0835490:intron 55.0%
ACGGTGTGAGCACCTACAGA+GGG + chr5_4:8861614-8861633 None:intergenic 55.0%
AACGGTGTGAGCACCTACAG+AGG + chr5_4:8861615-8861634 None:intergenic 55.0%
TCTGTAGGTGCTCACACCGT+TGG - chr5_4:8861614-8861633 Msa0835490:CDS 55.0%
CCCTTGGATCCACATCCCTT+GGG + chr5_4:8861748-8861767 None:intergenic 55.0%
CCCAAGGGATGTGGATCCAA+GGG - chr5_4:8861745-8861764 Msa0835490:intron 55.0%
ACCCTTGGATCCACATCCCT+TGG + chr5_4:8861749-8861768 None:intergenic 55.0%
! CGTGAAGAGGACTTGGTCTG+AGG + chr5_4:8861855-8861874 None:intergenic 55.0%
! CTTTCAGGTAATGCGCCGCG+TGG - chr5_4:8860724-8860743 Msa0835490:intron 60.0%
GCCCAAGGGATGTGGATCCA+AGG - chr5_4:8861744-8861763 Msa0835490:intron 60.0%
TGTCGGGGTCACGAGCCAGT+TGG + chr5_4:8859483-8859502 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8859456 8862210 8859456 ID=Msa0835490;Name=Msa0835490
chr5_4 mRNA 8859456 8862210 8859456 ID=Msa0835490-mRNA-1;Parent=Msa0835490;Name=Msa0835490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=186|1|1|1|1|1|4|186|328
chr5_4 exon 8859456 8860045 8859456 ID=Msa0835490-mRNA-1:exon:3882;Parent=Msa0835490-mRNA-1
chr5_4 exon 8860936 8861101 8860936 ID=Msa0835490-mRNA-1:exon:3881;Parent=Msa0835490-mRNA-1
chr5_4 exon 8861507 8861707 8861507 ID=Msa0835490-mRNA-1:exon:3880;Parent=Msa0835490-mRNA-1
chr5_4 exon 8861809 8862210 8861809 ID=Msa0835490-mRNA-1:exon:3879;Parent=Msa0835490-mRNA-1
chr5_4 five_prime_UTR 8862025 8862210 8862025 ID=Msa0835490-mRNA-1:five_prime_utr;Parent=Msa0835490-mRNA-1
chr5_4 CDS 8861809 8862024 8861809 ID=Msa0835490-mRNA-1:cds;Parent=Msa0835490-mRNA-1
chr5_4 CDS 8861507 8861707 8861507 ID=Msa0835490-mRNA-1:cds;Parent=Msa0835490-mRNA-1
chr5_4 CDS 8860936 8861101 8860936 ID=Msa0835490-mRNA-1:cds;Parent=Msa0835490-mRNA-1
chr5_4 CDS 8859642 8860045 8859642 ID=Msa0835490-mRNA-1:cds;Parent=Msa0835490-mRNA-1
chr5_4 three_prime_UTR 8859456 8859641 8859456 ID=Msa0835490-mRNA-1:three_prime_utr;Parent=Msa0835490-mRNA-1
Gene Sequence

>Msa0835490

ATGGCTCAGCTTAATCTTATACTTGTTTGGTTACTCTTCTTAACTCTCTTTCTTCATTCATGTCCTACTCATGCCCAATTAAGTAGACACCACTACAAGAATTCTTGTCCTAATGTTGAAAACATTGTCAGACAAGCTGTCAAAAAGAAATTTCATCAAACATTTACAACAGTTCCTGCCACTCTACGTCTCTTCTTCCATGACTGCTTTGTTCAGGGGTGTGATGGTTCTATTCTTGTAGCATCAACGCCACATAATAGAGCAGAGAGGGATCACCCTGATAATCTTTCATTGGCTGGAGATGGATTTGATACTGTTATACAAGCCAAAGCAGCTGTGGATGCTGTTCCTCTTTGCCAGAATAAAGTTTCTTGTGCTGATATTCTAGCTATGGCAACCCGTGATGTTATTGCATTGGCAGGAGGACCATACTATGAGGTAGAATTGGGAAGATTTGATGGGCTAAGATCTAAAGATTCTGATGTAAATGGAAAACTTCCTGAGCCAGGATTCAACTTGAACCAGCTTAATACATTGTTTAAACATCACGGGCTTACACAAACAGAAATGATTGCACTTTCAGGTGCTCACACCGTTGGATTCTCACATTGCAACAAATTCACCAATAGAGTGTACAATTTCAGGACAACAAGTCGAGTAGACCCTACATTAGACTTACACTACGCAGCAAAATTAAAATCAATGTGCCCAAGGGATGTGGATCCAAGGGTTGCAGTTGATATGGACCCAATTACTCCACATGCCTTTGATAATGTCTATTTCAAGAATCTACAAAAGGGAAAGGGTTTATTCACCTCAGACCAAGTCCTCTTCACGGATTCAAGATCCAAAGCTGCAGTAAATGCTTTTGCTAGTAGTAACAAAATATTTCGTGCCAACTTTGTTGCTGCCATGACCAAATTGGGTCGAGTTGGTGTCAAGAATTCACACAATGGGAACATTCGTGCGGATTGTTCTGTGATTTAA

Protein sequence

>Msa0835490

MAQLNLILVWLLFLTLFLHSCPTHAQLSRHHYKNSCPNVENIVRQAVKKKFHQTFTTVPATLRLFFHDCFVQGCDGSILVASTPHNRAERDHPDNLSLAGDGFDTVIQAKAAVDAVPLCQNKVSCADILAMATRDVIALAGGPYYEVELGRFDGLRSKDSDVNGKLPEPGFNLNQLNTLFKHHGLTQTEMIALSGAHTVGFSHCNKFTNRVYNFRTTSRVDPTLDLHYAAKLKSMCPRDVDPRVAVDMDPITPHAFDNVYFKNLQKGKGLFTSDQVLFTDSRSKAAVNAFASSNKIFRANFVAAMTKLGRVGVKNSHNGNIRADCSVI*