AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928440 MtrunA17_Chr6g0484731 96.970 99 3 0 1 99 314 412 5.38e-61 197
Msa0928440 MtrunA17_Chr6g0484731 69.608 102 23 2 72 167 470 569 7.94e-38 135
Msa0928440 MtrunA17_Chr4g0010951 49.231 65 31 1 7 71 196 258 1.34e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928440 AT1G49050.1 58.824 102 39 2 1 99 327 428 1.75e-34 127
Msa0928440 AT1G49050.1 67.273 55 18 0 100 154 520 574 4.56e-21 89.4
Msa0928440 AT1G49050.3 58.824 102 39 2 1 99 327 428 4.03e-33 122
Msa0928440 AT1G49050.2 58.824 102 39 2 1 99 154 255 9.28e-33 120
Msa0928440 AT1G49050.2 67.273 55 18 0 100 154 347 401 9.01e-20 85.1
Msa0928440 AT1G44130.1 47.143 70 35 1 7 76 176 243 3.40e-14 69.3
Msa0928440 AT4G33490.2 46.667 60 30 1 10 69 188 245 3.69e-11 60.8
Msa0928440 AT4G33490.1 46.667 60 30 1 10 69 185 242 3.90e-11 60.8
Msa0928440 AT1G77480.1 47.619 63 31 1 9 71 196 256 4.03e-11 60.8
Msa0928440 AT1G77480.2 50.000 60 28 1 9 68 196 253 4.17e-11 60.8
Msa0928440 AT2G36670.2 36.145 83 51 1 10 92 241 321 6.72e-11 60.1
Msa0928440 AT2G36670.1 36.145 83 51 1 10 92 246 326 7.34e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCAAATTCCTACATTA+TGG 0.236616 6_2:+73930702 None:intergenic
CATTTCACTGCGAGGACATT+TGG 0.309662 6_2:-73930892 Msa0928440:CDS
ACAGCCATAATGTAGGAATT+TGG 0.323570 6_2:-73930706 Msa0928440:three_prime_UTR
CTGACTGACATCTAAGATTC+TGG 0.356340 6_2:+73930753 None:intergenic
GTTTGCTTAGCTATCCTTGA+TGG 0.362073 6_2:-73931549 Msa0928440:CDS
GGTGGTGGATACATGTTCTT+AGG 0.378570 6_2:-73933028 Msa0928440:CDS
CCTTTACTTGCCAACTGATA+AGG 0.384810 6_2:+73933097 None:intergenic
GACAATGTGAACAAGAAAAT+TGG 0.390168 6_2:-73930861 Msa0928440:CDS
CTTATCAGTTGGCAAGTAAA+GGG 0.396616 6_2:-73933096 Msa0928440:CDS
AATGAAAATAAAGCTCATAA+TGG 0.401448 6_2:+73930489 None:intergenic
ACCCAAGTCATACCCCAATA+AGG 0.406933 6_2:+73932992 None:intergenic
AATCGTCTACTCAGATTTGA+TGG 0.416588 6_2:-73932295 Msa0928440:CDS
TTTGATGGAAACAGCAAAGT+TGG 0.425851 6_2:-73932280 Msa0928440:CDS
GTCTTCTTCAACATTCTGCT+TGG 0.430467 6_2:+73930813 None:intergenic
GAAAGTACCTCCAAGTATAA+TGG 0.441127 6_2:+73931503 None:intergenic
TTATTCTAAGAATCTCAGTT+TGG 0.446841 6_2:+73932326 None:intergenic
CCTTATCAGTTGGCAAGTAA+AGG 0.447353 6_2:-73933097 Msa0928440:CDS
AATGTCGTTGGTCATTGCTT+AGG 0.453281 6_2:-73933064 Msa0928440:CDS
TGCCTTATTGGGGTATGACT+TGG 0.456727 6_2:-73932994 Msa0928440:CDS
CATTTACATTGCTACCATCA+AGG 0.483225 6_2:+73931535 None:intergenic
CACAACTTTAACCAACTGAC+AGG 0.485605 6_2:-73930585 Msa0928440:three_prime_UTR
GATGGATCCTCCATTATACT+TGG 0.487511 6_2:-73931513 Msa0928440:CDS
ACTTACGTAGTTTGCGCCAT+AGG 0.489103 6_2:+73932968 None:intergenic
TGCTTAGGAAATGACGGAGT+TGG 0.499502 6_2:-73933049 Msa0928440:CDS
GCCTTATTGGGGTATGACTT+GGG 0.505772 6_2:-73932993 Msa0928440:CDS
GTGTAAAATAGTATGTGTAT+AGG 0.508629 6_2:-73930730 Msa0928440:three_prime_UTR
CAGAATCTTAGATGTCAGTC+AGG 0.510750 6_2:-73930752 Msa0928440:three_prime_UTR
TGTGAACAAGAAAATTGGTT+GGG 0.514352 6_2:-73930856 Msa0928440:CDS
GGGTATGACTTGGGTACCTA+TGG 0.525468 6_2:-73932984 Msa0928440:CDS
GGAAATGACGGAGTTGGTGG+TGG 0.530741 6_2:-73933043 Msa0928440:CDS
GGGCTTATTAAGAATGTCGT+TGG 0.543021 6_2:-73933076 Msa0928440:CDS
GGATCCTCCATTATACTTGG+AGG 0.553808 6_2:-73931510 Msa0928440:intron
AGTTGGCCTACCTTATCAGT+TGG 0.558500 6_2:-73933107 Msa0928440:CDS
ATACATTGAGTTTCACCGCT+AGG 0.569090 6_2:+73930643 None:intergenic
GGACTGAGCAGAGCGAAAGT+TGG 0.573902 6_2:-73933124 Msa0928440:CDS
GAGATTCTTAGAATAAACTA+CGG 0.577779 6_2:-73932319 Msa0928440:CDS
GATGGTAGCAATGTAAATGA+TGG 0.578345 6_2:-73931531 Msa0928440:CDS
GCCATAATGTAGGAATTTGG+AGG 0.580014 6_2:-73930703 Msa0928440:three_prime_UTR
ACTTCTATGCTGCAGAACAA+AGG 0.581078 6_2:-73931576 Msa0928440:intron
GGTCATTGCTTAGGAAATGA+CGG 0.593741 6_2:-73933055 Msa0928440:CDS
ATGTGAACAAGAAAATTGGT+TGG 0.596695 6_2:-73930857 Msa0928440:CDS
TATAGGTACAGCCATAATGT+AGG 0.599924 6_2:-73930713 Msa0928440:three_prime_UTR
TTAGGAAATGACGGAGTTGG+TGG 0.612048 6_2:-73933046 Msa0928440:CDS
AAACAGCAAAGTTGGAAAGG+TGG 0.619187 6_2:-73932272 Msa0928440:intron
TGGAAACAGCAAAGTTGGAA+AGG 0.621929 6_2:-73932275 Msa0928440:CDS
AAGGTGTGGATATGATCAAG+AGG 0.642389 6_2:-73933188 Msa0928440:five_prime_UTR
AGTACCTCCAAGTATAATGG+AGG 0.647121 6_2:+73931506 None:intergenic
GGTTGGGAGAGAACAAAATG+TGG 0.665136 6_2:-73930840 Msa0928440:CDS
AGGTGTGGATATGATCAAGA+GGG 0.672075 6_2:-73933187 Msa0928440:five_prime_UTR
TACTTGCCAACTGATAAGGT+AGG 0.698010 6_2:+73933101 None:intergenic
TTTGCAGACATTTCACTGCG+AGG 0.715890 6_2:-73930900 Msa0928440:intron
ATGTTATCTTAAGAGCCTAG+CGG 0.723387 6_2:-73930658 Msa0928440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAAAAAAAAAAAAAC+TGG - chr6_2:73931859-73931878 Msa0928440:intron 10.0%
!!! TGTAATTTTTATTATATCAG+TGG - chr6_2:73931066-73931085 Msa0928440:intron 15.0%
!! TTAAATCTATAAATTTCTCT+AGG - chr6_2:73931694-73931713 Msa0928440:intron 15.0%
!! TTGAGAAATCTACAATATAT+CGG - chr6_2:73930786-73930805 Msa0928440:CDS 20.0%
!! AAAATACTGAAATGAAAACA+GGG - chr6_2:73930964-73930983 Msa0928440:intron 20.0%
!!! CTTCTGTTTTTAAGAATTTT+CGG - chr6_2:73931003-73931022 Msa0928440:intron 20.0%
!!! ATAGTTTTAAGAATCAATGT+TGG + chr6_2:73931148-73931167 None:intergenic 20.0%
!! AAAAGTTGTATTAGAAAAAG+AGG + chr6_2:73932032-73932051 None:intergenic 20.0%
!! ATATATATGAATCAAGAGTT+AGG + chr6_2:73932493-73932512 None:intergenic 20.0%
!! TGTTCACAAATTAGAAAATA+AGG + chr6_2:73932718-73932737 None:intergenic 20.0%
!!! ATTTTAAGTAAGCAAAACTA+AGG - chr6_2:73933125-73933144 Msa0928440:CDS 20.0%
!! AATGAAAATAAAGCTCATAA+TGG + chr6_2:73933188-73933207 None:intergenic 20.0%
! GCAAAAATTGAAAACGAAAA+CGG + chr6_2:73930837-73930856 None:intergenic 25.0%
!! ATTTTTGCTTTGTATGTCAA+TGG - chr6_2:73930849-73930868 Msa0928440:CDS 25.0%
! GAAAATACTGAAATGAAAAC+AGG - chr6_2:73930963-73930982 Msa0928440:intron 25.0%
!! TTATTCTAAGAATCTCAGTT+TGG + chr6_2:73931351-73931370 None:intergenic 25.0%
! GAGATTCTTAGAATAAACTA+CGG - chr6_2:73931355-73931374 Msa0928440:intron 25.0%
!!! TCTGTGAGTTTTTATTTCTA+AGG - chr6_2:73931487-73931506 Msa0928440:intron 25.0%
! CTTATGTATAAGCACTTATA+TGG - chr6_2:73931790-73931809 Msa0928440:intron 25.0%
! GAACAAAAATCATTTGGAAA+TGG + chr6_2:73932059-73932078 None:intergenic 25.0%
!! TTCCAAATGATTTTTGTTCT+TGG - chr6_2:73932060-73932079 Msa0928440:intron 25.0%
! TTCCAAGAACAAAAATCATT+TGG + chr6_2:73932065-73932084 None:intergenic 25.0%
!! AAATGATTTTTGTTCTTGGA+AGG - chr6_2:73932064-73932083 Msa0928440:intron 25.0%
!! CATAATAAAGTTTTCCTTGA+GGG + chr6_2:73932200-73932219 None:intergenic 25.0%
!! TCATAATAAAGTTTTCCTTG+AGG + chr6_2:73932201-73932220 None:intergenic 25.0%
! AACCTTGTATAAAAACTAGA+AGG + chr6_2:73932231-73932250 None:intergenic 25.0%
!!! GGTTTTTTTATGTTGATGAA+TGG - chr6_2:73932247-73932266 Msa0928440:intron 25.0%
!!! ATGCTTTATACACTCTTTTT+TGG - chr6_2:73932286-73932305 Msa0928440:CDS 25.0%
!!! TGCTATTTTACATTAAGCTT+TGG - chr6_2:73932406-73932425 Msa0928440:intron 25.0%
! GTGTAAAATAGTATGTGTAT+AGG - chr6_2:73932944-73932963 Msa0928440:intron 25.0%
!! TGATGATTTTGTGCCTTATT+GGG - chr6_2:73930669-73930688 Msa0928440:three_prime_UTR 30.0%
TCAATGGCTAGAATAACATT+TGG - chr6_2:73930865-73930884 Msa0928440:CDS 30.0%
ATATCAGTGGAAATGAAAAC+AGG - chr6_2:73931079-73931098 Msa0928440:intron 30.0%
TATTCTCAAATTGGAGCTTT+AGG + chr6_2:73931125-73931144 None:intergenic 30.0%
CAATGTTGGTATTCTCAAAT+TGG + chr6_2:73931134-73931153 None:intergenic 30.0%
!! CTTGTTATTTGTTGTTTCTG+AGG - chr6_2:73931263-73931282 Msa0928440:intron 30.0%
!! TGTACTTCTTTTAAGTCCAA+TGG - chr6_2:73931517-73931536 Msa0928440:CDS 30.0%
! CTTAAAGAAGTTTCTGGATT+GGG - chr6_2:73931545-73931564 Msa0928440:CDS 30.0%
ATACAACTTTGCCAATTTGT+TGG - chr6_2:73931588-73931607 Msa0928440:intron 30.0%
CAGCATAGAAGTTTATTAGA+AGG + chr6_2:73932090-73932109 None:intergenic 30.0%
!!! TGCCTTCTAGTTTTTATACA+AGG - chr6_2:73932226-73932245 Msa0928440:intron 30.0%
! TGTTGATAAATAACTCAGCT+AGG - chr6_2:73932314-73932333 Msa0928440:CDS 30.0%
CCTCAATAACACTTAATGAA+TGG + chr6_2:73932346-73932365 None:intergenic 30.0%
! CCATTCATTAAGTGTTATTG+AGG - chr6_2:73932343-73932362 Msa0928440:intron 30.0%
GACAATGTGAACAAGAAAAT+TGG - chr6_2:73932813-73932832 Msa0928440:intron 30.0%
ATGTGAACAAGAAAATTGGT+TGG - chr6_2:73932817-73932836 Msa0928440:intron 30.0%
TGTGAACAAGAAAATTGGTT+GGG - chr6_2:73932818-73932837 Msa0928440:intron 30.0%
AACACATTGGCAAAAACAGA+TGG - chr6_2:73930520-73930539 Msa0928440:three_prime_UTR 35.0%
GCAAAAACAGATGGAATCAT+GGG - chr6_2:73930529-73930548 Msa0928440:three_prime_UTR 35.0%
CTTATCAGTTGGCAAGTAAA+GGG - chr6_2:73930578-73930597 Msa0928440:three_prime_UTR 35.0%
! GTGATGATTTTGTGCCTTAT+TGG - chr6_2:73930668-73930687 Msa0928440:three_prime_UTR 35.0%
!! GATGATTTTGTGCCTTATTG+GGG - chr6_2:73930670-73930689 Msa0928440:three_prime_UTR 35.0%
GAAAACAGGGATTATATCAG+TGG - chr6_2:73930977-73930996 Msa0928440:intron 35.0%
CAGGAAACAGATGAAGTAAT+CGG - chr6_2:73931098-73931117 Msa0928440:intron 35.0%
AATCGTCTACTCAGATTTGA+TGG - chr6_2:73931379-73931398 Msa0928440:intron 35.0%
TTTGATGGAAACAGCAAAGT+TGG - chr6_2:73931394-73931413 Msa0928440:intron 35.0%
! TTGTACGTATTTTCCGAAAG+AGG - chr6_2:73931444-73931463 Msa0928440:intron 35.0%
! GCTTAAAGAAGTTTCTGGAT+TGG - chr6_2:73931544-73931563 Msa0928440:CDS 35.0%
! AAATTAGCCTGCCAACAAAT+TGG + chr6_2:73931602-73931621 None:intergenic 35.0%
CTAATTTCCCAATCAGGTAA+GGG - chr6_2:73931615-73931634 Msa0928440:intron 35.0%
GCATTACAAAAACCAAAGAC+TGG + chr6_2:73931660-73931679 None:intergenic 35.0%
AGATCTGCATGCATTTAACA+TGG + chr6_2:73931893-73931912 None:intergenic 35.0%
! AAGACATTAACGCTTCGTTT+TGG - chr6_2:73931937-73931956 Msa0928440:intron 35.0%
!!! TTCGTTTTGGAAACAAATGG+TGG - chr6_2:73931950-73931969 Msa0928440:intron 35.0%
! GGATTTTGTCCACATTGTTT+CGG - chr6_2:73931971-73931990 Msa0928440:intron 35.0%
CTAATGATCAAATAACCCTC+CGG + chr6_2:73932003-73932022 None:intergenic 35.0%
CATTTACATTGCTACCATCA+AGG + chr6_2:73932142-73932161 None:intergenic 35.0%
GATGGTAGCAATGTAAATGA+TGG - chr6_2:73932143-73932162 Msa0928440:intron 35.0%
!! GAAAGTACCTCCAAGTATAA+TGG + chr6_2:73932174-73932193 None:intergenic 35.0%
CATTCGAAGGTAGCAAAAAT+TGG + chr6_2:73932523-73932542 None:intergenic 35.0%
TTGTTTCAGTCAACATTCGA+AGG + chr6_2:73932536-73932555 None:intergenic 35.0%
! ATGTTGACTGAAACAATCGT+TGG - chr6_2:73932540-73932559 Msa0928440:intron 35.0%
TATAGGTACAGCCATAATGT+AGG - chr6_2:73932961-73932980 Msa0928440:intron 35.0%
ACAGCCATAATGTAGGAATT+TGG - chr6_2:73932968-73932987 Msa0928440:intron 35.0%
TCCTCCAAATTCCTACATTA+TGG + chr6_2:73932975-73932994 None:intergenic 35.0%
ATGTTATCTTAAGAGCCTAG+CGG - chr6_2:73933016-73933035 Msa0928440:CDS 35.0%
!! CAATTTGTTTTCCTGTCAGT+TGG + chr6_2:73933103-73933122 None:intergenic 35.0%
GGCAAAAACAGATGGAATCA+TGG - chr6_2:73930528-73930547 Msa0928440:three_prime_UTR 40.0%
TACTTGCCAACTGATAAGGT+AGG + chr6_2:73930576-73930595 None:intergenic 40.0%
CCTTTACTTGCCAACTGATA+AGG + chr6_2:73930580-73930599 None:intergenic 40.0%
CCTTATCAGTTGGCAAGTAA+AGG - chr6_2:73930577-73930596 Msa0928440:three_prime_UTR 40.0%
GGGCTTATTAAGAATGTCGT+TGG - chr6_2:73930598-73930617 Msa0928440:three_prime_UTR 40.0%
AATGTCGTTGGTCATTGCTT+AGG - chr6_2:73930610-73930629 Msa0928440:three_prime_UTR 40.0%
GGTCATTGCTTAGGAAATGA+CGG - chr6_2:73930619-73930638 Msa0928440:three_prime_UTR 40.0%
GTGAATGCCAACATTCTGTT+TGG - chr6_2:73931236-73931255 Msa0928440:intron 40.0%
AAGTGCTCCAAACAGAATGT+TGG + chr6_2:73931246-73931265 None:intergenic 40.0%
TGGAAACAGCAAAGTTGGAA+AGG - chr6_2:73931399-73931418 Msa0928440:intron 40.0%
AAACAGCAAAGTTGGAAAGG+TGG - chr6_2:73931402-73931421 Msa0928440:intron 40.0%
! GGAAAGGTGGTTTTTGATAG+TGG - chr6_2:73931415-73931434 Msa0928440:intron 40.0%
ACTTCTTTAAGCTGCACCAT+TGG + chr6_2:73931536-73931555 None:intergenic 40.0%
GTGCAGCTTAAAGAAGTTTC+TGG - chr6_2:73931539-73931558 Msa0928440:CDS 40.0%
!! AACTTTGCCAATTTGTTGGC+AGG - chr6_2:73931592-73931611 Msa0928440:intron 40.0%
GCTAATTTCCCAATCAGGTA+AGG - chr6_2:73931614-73931633 Msa0928440:intron 40.0%
CAGATCTGTCAAAGATGTCA+AGG - chr6_2:73931906-73931925 Msa0928440:intron 40.0%
!!! CGCTTCGTTTTGGAAACAAA+TGG - chr6_2:73931947-73931966 Msa0928440:intron 40.0%
ACTTCTATGCTGCAGAACAA+AGG - chr6_2:73932098-73932117 Msa0928440:intron 40.0%
GTTTGCTTAGCTATCCTTGA+TGG - chr6_2:73932125-73932144 Msa0928440:intron 40.0%
GATGGATCCTCCATTATACT+TGG - chr6_2:73932161-73932180 Msa0928440:intron 40.0%
AGTACCTCCAAGTATAATGG+AGG + chr6_2:73932171-73932190 None:intergenic 40.0%
GTCTTCTTCAACATTCTGCT+TGG + chr6_2:73932864-73932883 None:intergenic 40.0%
! CTGACTGACATCTAAGATTC+TGG + chr6_2:73932924-73932943 None:intergenic 40.0%
CAGAATCTTAGATGTCAGTC+AGG - chr6_2:73932922-73932941 Msa0928440:intron 40.0%
GCCATAATGTAGGAATTTGG+AGG - chr6_2:73932971-73932990 Msa0928440:intron 40.0%
ATACATTGAGTTTCACCGCT+AGG + chr6_2:73933034-73933053 None:intergenic 40.0%
CACAACTTTAACCAACTGAC+AGG - chr6_2:73933089-73933108 Msa0928440:CDS 40.0%
! GGGCATGCTTTTGAACACAT+TGG - chr6_2:73930507-73930526 Msa0928440:three_prime_UTR 45.0%
! AGTTGGCCTACCTTATCAGT+TGG - chr6_2:73930567-73930586 Msa0928440:three_prime_UTR 45.0%
! TGCTTAGGAAATGACGGAGT+TGG - chr6_2:73930625-73930644 Msa0928440:three_prime_UTR 45.0%
! TTAGGAAATGACGGAGTTGG+TGG - chr6_2:73930628-73930647 Msa0928440:three_prime_UTR 45.0%
!! GGTGGTGGATACATGTTCTT+AGG - chr6_2:73930646-73930665 Msa0928440:three_prime_UTR 45.0%
! TGCCTTATTGGGGTATGACT+TGG - chr6_2:73930680-73930699 Msa0928440:three_prime_UTR 45.0%
! GCCTTATTGGGGTATGACTT+GGG - chr6_2:73930681-73930700 Msa0928440:three_prime_UTR 45.0%
ACCCAAGTCATACCCCAATA+AGG + chr6_2:73930685-73930704 None:intergenic 45.0%
! ACTTACGTAGTTTGCGCCAT+AGG + chr6_2:73930709-73930728 None:intergenic 45.0%
ATGGCGCAAACTACGTAAGT+AGG - chr6_2:73930709-73930728 Msa0928440:three_prime_UTR 45.0%
!! TTTTCCGAAAGAGGCGTACT+TGG - chr6_2:73931453-73931472 Msa0928440:intron 45.0%
AGATCCAAGTACGCCTCTTT+CGG + chr6_2:73931460-73931479 None:intergenic 45.0%
GCGATTTCCCTTACCTGATT+GGG + chr6_2:73931625-73931644 None:intergenic 45.0%
AGCGATTTCCCTTACCTGAT+TGG + chr6_2:73931626-73931645 None:intergenic 45.0%
AATCAGGTAAGGGAAATCGC+TGG - chr6_2:73931625-73931644 Msa0928440:intron 45.0%
TGGAGGTGAAATCCAGTCTT+TGG - chr6_2:73931645-73931664 Msa0928440:intron 45.0%
ATGATCAAATAACCCTCCGG+CGG + chr6_2:73932000-73932019 None:intergenic 45.0%
GGATCCTCCATTATACTTGG+AGG - chr6_2:73932164-73932183 Msa0928440:intron 45.0%
!! ACTAGCTTCCTCTTTTCCAG+AGG - chr6_2:73932599-73932618 Msa0928440:intron 45.0%
TTTGCAGACATTTCACTGCG+AGG - chr6_2:73932774-73932793 Msa0928440:intron 45.0%
CATTTCACTGCGAGGACATT+TGG - chr6_2:73932782-73932801 Msa0928440:intron 45.0%
GGTTGGGAGAGAACAAAATG+TGG - chr6_2:73932834-73932853 Msa0928440:intron 45.0%
! GGGTATGACTTGGGTACCTA+TGG - chr6_2:73930690-73930709 Msa0928440:three_prime_UTR 50.0%
GGCAGGCTAATTTCCCAATC+AGG - chr6_2:73931609-73931628 Msa0928440:intron 50.0%
CACATTGTTTCGGATACCGC+CGG - chr6_2:73931981-73932000 Msa0928440:intron 50.0%
! GAGGTACTTTCACACCCTCA+AGG - chr6_2:73932183-73932202 Msa0928440:intron 50.0%
! CTTCCTCTTTTCCAGAGGAC+AGG - chr6_2:73932604-73932623 Msa0928440:intron 50.0%
! CATCCTGTCCTCTGGAAAAG+AGG + chr6_2:73932610-73932629 None:intergenic 50.0%
! CTCTTTTCCAGAGGACAGGA+TGG - chr6_2:73932608-73932627 Msa0928440:intron 50.0%
GTCTTAACCATCCTGTCCTC+TGG + chr6_2:73932618-73932637 None:intergenic 50.0%
GGACTGAGCAGAGCGAAAGT+TGG - chr6_2:73930550-73930569 Msa0928440:three_prime_UTR 55.0%
!! GGAAATGACGGAGTTGGTGG+TGG - chr6_2:73930631-73930650 Msa0928440:three_prime_UTR 55.0%
CAGGTAAGGGAAATCGCTGG+AGG - chr6_2:73931628-73931647 Msa0928440:intron 55.0%
CGGCGGTATCCGAAACAATG+TGG + chr6_2:73931983-73932002 None:intergenic 55.0%
ATTGTTTCGGATACCGCCGG+AGG - chr6_2:73931984-73932003 Msa0928440:intron 55.0%
TTGTTTCGGATACCGCCGGA+GGG - chr6_2:73931985-73932004 Msa0928440:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 73930489 73933207 73930489 ID=Msa0928440;Name=Msa0928440
chr6_2 mRNA 73930489 73933207 73930489 ID=Msa0928440-mRNA-1;Parent=Msa0928440;Name=Msa0928440-mRNA-1;_AED=0.23;_eAED=0.23;_QI=22|0.33|0.25|0.5|0.66|0.75|4|293|167
chr6_2 exon 73930489 73930915 73930489 ID=Msa0928440-mRNA-1:exon:12570;Parent=Msa0928440-mRNA-1
chr6_2 exon 73931511 73931583 73931511 ID=Msa0928440-mRNA-1:exon:12569;Parent=Msa0928440-mRNA-1
chr6_2 exon 73932273 73932357 73932273 ID=Msa0928440-mRNA-1:exon:12568;Parent=Msa0928440-mRNA-1
chr6_2 exon 73932974 73933207 73932974 ID=Msa0928440-mRNA-1:exon:12567;Parent=Msa0928440-mRNA-1
chr6_2 five_prime_UTR 73933186 73933207 73933186 ID=Msa0928440-mRNA-1:five_prime_utr;Parent=Msa0928440-mRNA-1
chr6_2 CDS 73932974 73933185 73932974 ID=Msa0928440-mRNA-1:cds;Parent=Msa0928440-mRNA-1
chr6_2 CDS 73932273 73932357 73932273 ID=Msa0928440-mRNA-1:cds;Parent=Msa0928440-mRNA-1
chr6_2 CDS 73931511 73931583 73931511 ID=Msa0928440-mRNA-1:cds;Parent=Msa0928440-mRNA-1
chr6_2 CDS 73930782 73930915 73930782 ID=Msa0928440-mRNA-1:cds;Parent=Msa0928440-mRNA-1
chr6_2 three_prime_UTR 73930489 73930781 73930489 ID=Msa0928440-mRNA-1:three_prime_utr;Parent=Msa0928440-mRNA-1
Gene Sequence

>Msa0928440

ATGCTTTTGAACACATTGGCAAAAACAGATGGAATCATGGGACTGAGCAGAGCGAAAGTTGGCCTACCTTATCAGTTGGCAAGTAAAGGGCTTATTAAGAATGTCGTTGGTCATTGCTTAGGAAATGACGGAGTTGGTGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCTTATTGGGGTATGACTTGGGTACCTATGGCGCAAACTACAGATTTATACCAAACTGAGATTCTTAGAATAAACTACGGAAATCGTCTACTCAGATTTGATGGAAACAGCAAAGTTGGAAAGGTGAACAAAGGCAATGTTTGCTTAGCTATCCTTGATGGTAGCAATGTAAATGATGGATCCTCCATTATACTTGGAGACATTTCACTGCGAGGACATTTGGTTGTGTATGACAATGTGAACAAGAAAATTGGTTGGGAGAGAACAAAATGTGGCATGCCAAGCAGAATGTTGAAGAAGACTCACAATTTCTTAACTGATAGTATGTTATGA
Protein sequence

>Msa0928440

MLLNTLAKTDGIMGLSRAKVGLPYQLASKGLIKNVVGHCLGNDGVGGGYMFLGDDFVPYWGMTWVPMAQTTDLYQTEILRINYGNRLLRFDGNSKVGKVNKGNVCLAILDGSNVNDGSSIILGDISLRGHLVVYDNVNKKIGWERTKCGMPSRMLKKTHNFLTDSML*