AlfalfaGEDB | Msa0138020

M. sativa cultivar zhongmu-4 / Msa0138020

KEGG: K08511
GO: GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023
PFAM: PF13774.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138020	XP_013470256.1	99.580	238	1	0	1	238	1	238	9.01e-176	492

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138020	sp\|Q9M376\|VA727_ARATH	86.134	238	33	0	1	238	1	238	3.93e-152	425

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138020	G7ZYS4	99.580	238	1	0	1	238	1	238	4.30e-176	492

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0138020	0.822310	2.537262e-53	-8.615850e-47
Msa0002250	Msa0138020	0.807800	4.234181e-50	-8.615850e-47
Msa0003400	Msa0138020	0.800939	1.139245e-48	-8.615850e-47
Msa0003630	Msa0138020	0.843175	1.647119e-58	-8.615850e-47
Msa0003890	Msa0138020	0.837062	6.488200e-57	-8.615850e-47
Msa0004840	Msa0138020	0.809694	1.666992e-50	-8.615850e-47
Msa0005270	Msa0138020	0.845718	3.409856e-59	-8.615850e-47
Msa0006110	Msa0138020	0.849536	3.035526e-60	-8.615850e-47
Msa0007440	Msa0138020	0.874990	4.382754e-68	-8.615850e-47
Msa0007470	Msa0138020	0.836887	7.191159e-57	-8.615850e-47

Showing 1 to 10 of 2,129 entries

Previous1 2 3 4 5…213Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138020	MtrunA17_Chr1g0210521	99.580	238	1	0	1	238	1	238	8.29e-180	492
Msa0138020	MtrunA17_Chr1g0169861	54.202	238	90	2	1	238	51	269	1.71e-96	283
Msa0138020	MtrunA17_Chr4g0010271	56.303	238	85	1	1	238	1	219	9.40e-96	279
Msa0138020	MtrunA17_Chr7g0237561	55.649	239	85	2	1	238	1	219	3.14e-92	270
Msa0138020	MtrunA17_Chr4g0043521	57.277	213	72	2	2	214	4	197	4.97e-92	270
Msa0138020	MtrunA17_Chr2g0296021	51.261	238	97	1	1	238	1	219	4.73e-91	267
Msa0138020	MtrunA17_Chr2g0291651	57.746	213	71	2	2	214	6	199	2.14e-90	265
Msa0138020	MtrunA17_Chr7g0237521	50.935	214	86	2	1	214	1	195	4.08e-78	234
Msa0138020	MtrunA17_Chr5g0441741	33.621	232	132	3	5	235	2	212	2.91e-44	148
Msa0138020	MtrunA17_Chr1g0169851	45.614	171	56	4	52	206	4	153	7.46e-43	142

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138020	AT3G54300.3	86.134	238	33	0	1	238	1	238	4.00e-153	425
Msa0138020	AT3G54300.2	86.134	238	33	0	1	238	1	238	4.00e-153	425
Msa0138020	AT3G54300.1	86.134	238	33	0	1	238	1	238	4.00e-153	425
Msa0138020	AT1G04760.2	56.723	238	84	1	1	238	1	219	7.48e-97	282
Msa0138020	AT1G04760.1	56.723	238	84	1	1	238	1	219	7.48e-97	282
Msa0138020	AT2G32670.1	57.143	238	83	1	1	238	66	284	1.65e-94	278
Msa0138020	AT2G33120.1	57.143	238	83	2	1	238	1	219	3.69e-94	275
Msa0138020	AT1G04750.1	56.723	238	84	2	1	238	1	219	2.04e-92	271
Msa0138020	AT2G33120.2	55.285	246	83	3	1	238	1	227	4.11e-91	268
Msa0138020	AT2G33110.1	47.059	238	103	3	1	238	1	215	8.07e-70	213

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Find 74 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACACTTATTCTTGTGA+TGG	0.544278	1_3:+70738367	Msa0138020:CDS
AACGGAAAACTTGCAGTTCC+AGG	0.368337	1_3:+70741293	Msa0138020:CDS
AAGAAATTGAATTCTGTATT+TGG	0.098661	1_3:+70741553	Msa0138020:three_prime_UTR
AATGATGGATAATATTGAGA+AGG	0.603558	1_3:+70739177	Msa0138020:CDS
AATTTGGTGCATGGAATTTA+TGG	0.221994	1_3:+70741622	Msa0138020:three_prime_UTR
ACAATCTTGATAGAGAATTT+GGG	0.414431	1_3:+70738974	Msa0138020:CDS
ACAGCTTCCAGAGGCAGGGC+AGG	0.424399	1_3:+70741404	Msa0138020:CDS
AGAAATTGAATTCTGTATTT+GGG	0.331639	1_3:+70741554	Msa0138020:three_prime_UTR
AGAAGAAAGAAAGAAAGAAA+AGG	0.457985	1_3:-70737951	None:intergenic
AGCTGACATAATAACTGGGG+TGG	0.627919	1_3:+70741710	Msa0138020:three_prime_UTR

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTACTTTCTGACCTCAATT+AGG	+	chr1_3:70738084-70738103	Msa0138020:intron	30.0%
TTACTTTCTGACCTCAATTA+GGG	+	chr1_3:70738085-70738104	Msa0138020:intron	30.0%
CAGAAAAATCTAGCAAGAAA+AGG	-	chr1_3:70738132-70738151	None:intergenic	30.0%
ATTGTCTAAGAGGAAATTGA+AGG	-	chr1_3:70738398-70738417	None:intergenic	30.0%
TTCAATTTCCTCTTAGACAA+TGG	+	chr1_3:70738397-70738416	Msa0138020:CDS	30.0%
CTAAAAAACGCTATAATTGC+AGG	-	chr1_3:70738483-70738502	None:intergenic	30.0%
TTTACTCATTTCTTCAGGAT+GGG	-	chr1_3:70739116-70739135	None:intergenic	30.0%
GATAGTTTACTCATTTCTTC+AGG	-	chr1_3:70739121-70739140	None:intergenic	30.0%
GAGTAAACTATCAAAGTTGA+AGG	+	chr1_3:70739129-70739148	Msa0138020:CDS	30.0%
ATACTACCTATTCTTATGTC+TGG	+	chr1_3:70739293-70739312	Msa0138020:intron	30.0%

Showing 1 to 10 of 277 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	70737900	70741761	70737900	ID=Msa0138020;Name=Msa0138020
chr1_3	mRNA	70737900	70741761	70737900	ID=Msa0138020-mRNA-1;Parent=Msa0138020;Name=Msa0138020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=136\|1\|1\|1\|0.6\|0.5\|6\|218\|238
chr1_3	exon	70737900	70738019	70737900	ID=Msa0138020-mRNA-1:exon:24545;Parent=Msa0138020-mRNA-1
chr1_3	exon	70738219	70738424	70738219	ID=Msa0138020-mRNA-1:exon:24546;Parent=Msa0138020-mRNA-1
chr1_3	exon	70738797	70738995	70738797	ID=Msa0138020-mRNA-1:exon:24547;Parent=Msa0138020-mRNA-1
chr1_3	exon	70739078	70739198	70739078	ID=Msa0138020-mRNA-1:exon:24548;Parent=Msa0138020-mRNA-1
chr1_3	exon	70741252	70741314	70741252	ID=Msa0138020-mRNA-1:exon:24549;Parent=Msa0138020-mRNA-1
chr1_3	exon	70741400	70741761	70741400	ID=Msa0138020-mRNA-1:exon:24550;Parent=Msa0138020-mRNA-1
chr1_3	five_prime_UTR	70737900	70738019	70737900	ID=Msa0138020-mRNA-1:five_prime_utr;Parent=Msa0138020-mRNA-1
chr1_3	five_prime_UTR	70738219	70738234	70738219	ID=Msa0138020-mRNA-1:five_prime_utr;Parent=Msa0138020-mRNA-1
chr1_3	CDS	70738235	70738424	70738235	ID=Msa0138020-mRNA-1:cds;Parent=Msa0138020-mRNA-1
chr1_3	CDS	70738797	70738995	70738797	ID=Msa0138020-mRNA-1:cds;Parent=Msa0138020-mRNA-1
chr1_3	CDS	70739078	70739198	70739078	ID=Msa0138020-mRNA-1:cds;Parent=Msa0138020-mRNA-1
chr1_3	CDS	70741252	70741314	70741252	ID=Msa0138020-mRNA-1:cds;Parent=Msa0138020-mRNA-1
chr1_3	CDS	70741400	70741543	70741400	ID=Msa0138020-mRNA-1:cds;Parent=Msa0138020-mRNA-1
chr1_3	three_prime_UTR	70741544	70741761	70741544	ID=Msa0138020-mRNA-1:three_prime_utr;Parent=Msa0138020-mRNA-1

Gene Sequence

>Msa0138020

ATGAGTCAAAGGGGTTTGATATATAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCAGAACACACTCAATATACTGGAAATTTCAGTACCATTGCTGTTCAATGCTTGAATAAGCTTCCTTCAAATAGCACCAAATACACTTATTCTTGTGATGGTCACACCTTCAATTTCCTCTTAGACAATGGATTCGTTTTCCTTGTTGTTGCTGATGAATCAATTGGAAGGAGTGTTCCTTTTGTGTTTTTGGAACGGGTGAAGGATGACTTTAACCAGCGTTATGGTGCTAGTATTAAGAATGCAAGCGACCATCCACTTGCTGATGATGATGAGGACGATGATTTGTTTGAAGATAGATTTAGCATTGCATACAATCTTGATAGAGAATTTGGGCCAAGTCTTAAGGGGCATATGCAGTATTGTTTGACCCATCCTGAAGAAATGAGTAAACTATCAAAGTTGAAGGCTCAAATAACTGAGGTCAAGGGGATAATGATGGATAATATTGAGAAGGTGTTGGATCGTGGGGAGAAGATTGAACTTTTGGTGGATAAAACGGAAAACTTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAGGGCAGGCAGCTAAGAAGGAAGATGTGGCTGCAGAATCTCCAAATGAAGCTGATGGTGGGAGGAGGAATCCTTATCTTAGTTATAATATTATGGGTTATTGCTTGTGGGGGTTTCAAATGTTGA

Protein sequence

>Msa0138020

MSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLNKLPSNSTKYTYSCDGHTFNFLLDNGFVFLVVADESIGRSVPFVFLERVKDDFNQRYGASIKNASDHPLADDDEDDDLFEDRFSIAYNLDREFGPSLKGHMQYCLTHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMVGGGILILVIILWVIACGGFKC*